Query psy7091
Match_columns 205
No_of_seqs 117 out of 132
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 17:57:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7091.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7091hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qk2_A LP04448P; mini spindles 96.7 0.0014 4.9E-08 52.8 4.4 98 103-203 14-113 (242)
2 2qk1_A Protein STU2; STU2P, XM 95.9 0.019 6.5E-07 47.9 7.2 93 105-198 105-200 (249)
3 2bpt_A Importin beta-1 subunit 95.5 0.008 2.7E-07 55.4 3.5 90 104-196 639-730 (861)
4 4fdd_A Transportin-1; heat rep 94.5 0.014 4.8E-07 55.1 2.2 91 102-195 440-532 (852)
5 4fdd_A Transportin-1; heat rep 94.3 0.043 1.5E-06 51.8 5.1 94 103-199 628-722 (852)
6 2qk2_A LP04448P; mini spindles 94.3 0.14 4.8E-06 41.0 7.5 85 104-195 98-182 (242)
7 1u6g_C TIP120 protein, CAND1; 94.0 0.047 1.6E-06 53.7 4.8 91 102-195 211-302 (1230)
8 2bpt_A Importin beta-1 subunit 93.8 0.037 1.3E-06 51.0 3.5 96 101-199 590-691 (861)
9 1ibr_B P95, importin beta-1 su 93.6 0.074 2.5E-06 44.9 4.8 88 104-194 366-456 (462)
10 1qgr_A Protein (importin beta 92.9 0.043 1.5E-06 50.6 2.4 90 103-195 648-740 (876)
11 1u6g_C TIP120 protein, CAND1; 92.8 0.094 3.2E-06 51.6 4.8 90 103-195 518-616 (1230)
12 1ibr_B P95, importin beta-1 su 92.5 0.13 4.5E-06 43.4 4.7 93 103-201 320-421 (462)
13 2qk1_A Protein STU2; STU2P, XM 92.0 0.14 4.7E-06 42.6 4.2 82 102-190 144-234 (249)
14 1qgr_A Protein (importin beta 91.4 0.18 6.2E-06 46.5 4.6 92 104-196 408-512 (876)
15 2x19_B Importin-13; nuclear tr 91.3 0.4 1.4E-05 45.6 7.0 90 103-196 528-619 (963)
16 2x1g_F Cadmus; transport prote 85.8 0.59 2E-05 44.8 4.1 88 103-195 545-634 (971)
17 4ffb_C Protein STU2; tubulin f 84.4 2 7E-05 35.2 6.2 94 105-203 103-198 (278)
18 3m1i_C Exportin-1; heat repeat 78.7 2 6.7E-05 42.1 4.8 92 103-195 539-638 (1049)
19 1b3u_A Protein (protein phosph 75.8 1.2 4.1E-05 38.7 2.2 86 103-195 440-525 (588)
20 4ffb_C Protein STU2; tubulin f 74.6 10 0.00036 30.9 7.5 74 100-175 7-85 (278)
21 1b3u_A Protein (protein phosph 72.8 4.8 0.00016 35.0 5.2 88 103-197 479-566 (588)
22 1wa5_C Importin alpha RE-expor 66.4 3.3 0.00011 40.0 3.0 91 102-195 494-600 (960)
23 1wa5_B Importin alpha subunit; 64.6 5.3 0.00018 35.3 3.8 75 103-177 382-460 (530)
24 2vgl_B AP-2 complex subunit be 60.7 21 0.00073 32.5 7.2 70 105-177 122-192 (591)
25 1wa5_C Importin alpha RE-expor 60.7 7.6 0.00026 37.5 4.4 92 101-195 541-647 (960)
26 3gs3_A Symplekin, LD45768P; he 58.2 5.6 0.00019 34.2 2.7 66 103-168 48-113 (257)
27 1wa5_B Importin alpha subunit; 55.9 22 0.00075 31.3 6.2 73 104-176 215-288 (530)
28 4b8j_A Importin subunit alpha- 54.1 8.7 0.0003 33.7 3.3 74 104-177 371-446 (528)
29 2of3_A ZYG-9; multifunctional 53.8 19 0.00066 31.0 5.4 69 103-178 131-200 (266)
30 2jdq_A Importin alpha-1 subuni 53.3 11 0.00036 31.7 3.6 73 104-176 64-138 (450)
31 3ibv_A Exportin-T; karyopherin 52.5 27 0.00093 34.7 6.9 92 103-194 534-648 (980)
32 2jdq_A Importin alpha-1 subuni 51.9 36 0.0012 28.4 6.7 72 104-175 149-222 (450)
33 2iw3_A Elongation factor 3A; a 49.1 21 0.00071 36.3 5.5 84 105-195 96-181 (986)
34 3ltm_A Alpha-REP4; protein eng 47.3 73 0.0025 24.0 7.3 28 145-172 143-170 (211)
35 1w63_A Adapter-related protein 45.9 11 0.00039 34.8 2.8 88 104-191 179-280 (618)
36 4db8_A Armadillo-repeat protei 45.7 20 0.00069 27.6 3.9 75 101-175 9-84 (252)
37 2x19_B Importin-13; nuclear tr 45.7 19 0.00064 34.2 4.3 65 129-193 798-868 (963)
38 2vgl_A Adaptor protein complex 45.1 30 0.001 32.2 5.6 72 104-177 146-219 (621)
39 3ltm_A Alpha-REP4; protein eng 44.7 61 0.0021 24.4 6.5 29 144-172 80-108 (211)
40 4b8j_A Importin subunit alpha- 41.4 46 0.0016 29.0 5.9 71 105-175 203-274 (528)
41 3ltj_A Alpharep-4; protein eng 40.8 69 0.0024 23.9 6.2 28 145-172 138-165 (201)
42 4hat_C Exportin-1; heat repeat 40.0 28 0.00095 35.0 4.7 92 103-195 539-638 (1023)
43 3ul1_B Importin subunit alpha- 39.5 22 0.00075 31.7 3.6 78 104-181 358-437 (510)
44 4db6_A Armadillo repeat protei 39.0 29 0.00098 26.0 3.7 72 105-176 97-169 (210)
45 3tpo_A Importin subunit alpha- 38.1 21 0.00072 31.9 3.2 78 104-181 377-456 (529)
46 4db6_A Armadillo repeat protei 37.6 22 0.00074 26.7 2.8 70 104-173 138-208 (210)
47 2vgl_A Adaptor protein complex 36.9 13 0.00045 34.7 1.8 98 95-192 178-289 (621)
48 4db8_A Armadillo-repeat protei 36.8 21 0.00073 27.5 2.7 73 104-176 138-211 (252)
49 2vgl_B AP-2 complex subunit be 36.6 7.2 0.00025 35.7 -0.1 66 96-161 152-218 (591)
50 2iw3_A Elongation factor 3A; a 35.8 23 0.0008 36.0 3.5 74 105-178 252-328 (986)
51 3o2t_A Symplekin; heat repeat, 33.5 25 0.00085 32.0 3.0 65 104-168 59-123 (386)
52 3eg5_B Protein diaphanous homo 33.3 71 0.0024 28.4 5.9 55 144-203 161-215 (383)
53 3ltj_A Alpharep-4; protein eng 32.3 1.1E+02 0.0036 22.8 6.0 28 145-172 107-134 (201)
54 4hat_C Exportin-1; heat repeat 32.3 19 0.00064 36.2 2.1 98 103-200 584-700 (1023)
55 4hxt_A De novo protein OR329; 31.6 41 0.0014 25.4 3.5 70 106-175 4-74 (252)
56 3ldz_A STAM-1, signal transduc 30.2 54 0.0018 25.2 4.0 47 126-176 27-73 (140)
57 2x1g_F Cadmus; transport prote 29.1 27 0.00093 33.3 2.5 55 137-194 683-739 (971)
58 1w63_A Adapter-related protein 27.8 44 0.0015 30.8 3.7 30 144-173 141-170 (618)
59 3zyq_A Hepatocyte growth facto 27.1 59 0.002 26.8 4.0 47 125-175 29-75 (226)
60 1x5b_A Signal transducing adap 26.1 67 0.0023 25.3 4.0 45 127-176 38-83 (163)
61 1mhq_A ADP-ribosylation factor 25.7 70 0.0024 24.9 4.0 45 127-176 24-69 (148)
62 3m1i_C Exportin-1; heat repeat 24.3 39 0.0013 33.0 2.7 97 103-199 584-699 (1049)
63 3g2s_A C-terminal fragment of 24.1 78 0.0027 24.8 4.0 31 146-176 49-79 (149)
64 1oyz_A Hypothetical protein YI 24.1 1.4E+02 0.0048 23.4 5.6 28 145-172 159-186 (280)
65 4hxt_A De novo protein OR329; 23.8 74 0.0025 24.0 3.7 73 104-176 170-243 (252)
66 1oyz_A Hypothetical protein YI 23.0 1.2E+02 0.0042 23.8 5.1 61 104-172 159-219 (280)
67 3ktb_A Arsenical resistance op 22.1 39 0.0013 25.7 1.8 29 115-143 51-79 (106)
68 1te4_A Conserved protein MTH18 21.9 67 0.0023 22.8 3.0 57 106-172 44-100 (131)
69 1juq_A ADP-ribosylation factor 21.8 90 0.0031 24.8 4.0 46 126-176 35-81 (171)
70 2f31_A Diaphanous protein homo 20.6 1.6E+02 0.0056 23.8 5.5 34 144-177 95-128 (233)
71 3tjz_B Coatomer subunit gamma; 20.5 65 0.0022 28.6 3.2 30 143-172 137-166 (355)
72 1dvp_A HRS, hepatocyte growth 20.1 99 0.0034 25.1 4.0 48 125-176 26-73 (220)
No 1
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=96.70 E-value=0.0014 Score=52.85 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=79.1
Q ss_pred CCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhc-CCCHHHHHHHHHHHHHHHhcCCcccc
Q psy7091 103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALS-TRNPEVICETLKVLQHLVTSSSMVGE 181 (205)
Q Consensus 103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~-Trd~~V~~~~L~~Lq~LV~~~~~VG~ 181 (205)
..+.+-|++++...+--+|.-|..++..+++..+.-+-.-+.+++..|+..|. ..|..|...++++|..|+. ..|+
T Consensus 14 ~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~---~l~~ 90 (242)
T 2qk2_A 14 SKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAK---GLAK 90 (242)
T ss_dssp GGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH---HHGG
T ss_pred ccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH---HHhh
Confidence 44556799999988888999999999999987443233456788999999995 8999999999999999974 5789
Q ss_pred chhhHHHhhhhhhh-Hhhhcccc
Q psy7091 182 ALVPYYKQILPHLN-MYKDLNNR 203 (205)
Q Consensus 182 ALvPyyRqLLPvlN-lfk~~n~n 203 (205)
.+-+|..+++|.+- .+++++..
T Consensus 91 ~~~~~~~~ilp~ll~~l~d~~~~ 113 (242)
T 2qk2_A 91 RFSNYASACVPSLLEKFKEKKPN 113 (242)
T ss_dssp GGHHHHHHHHHHHHHGGGCCCHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999998654 66665543
No 2
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=95.91 E-value=0.019 Score=47.92 Aligned_cols=93 Identities=10% Similarity=0.127 Sum_probs=71.3
Q ss_pred chhhhhcccccccchhHhHHHhHHHHHHHcCCCceecc--cccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccc
Q psy7091 105 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPV--LPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEA 182 (205)
Q Consensus 105 yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPv--lPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~A 182 (205)
+||..+|-+.|.+..-+--|...+..+++.... +.+. ++.++..|-.+|+++++.+-..+|..|..++..+...-..
T Consensus 105 llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~ 183 (249)
T 2qk1_A 105 VFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYST 183 (249)
T ss_dssp HHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchh
Confidence 567888888888765555555566666665433 4444 8899999999999999999999999999998765544467
Q ss_pred hhhHH-HhhhhhhhHhh
Q psy7091 183 LVPYY-KQILPHLNMYK 198 (205)
Q Consensus 183 LvPyy-RqLLPvlNlfk 198 (205)
+.+|+ .+|+|++--+-
T Consensus 184 l~~~l~~~iip~l~~~l 200 (249)
T 2qk1_A 184 LQRYLKDEVVPIVIQIV 200 (249)
T ss_dssp HHHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999 99999886443
No 3
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=95.49 E-value=0.008 Score=55.37 Aligned_cols=90 Identities=17% Similarity=0.291 Sum_probs=72.9
Q ss_pred CchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCC--HHHHHHHHHHHHHHHhcCCcccc
Q psy7091 104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRN--PEVICETLKVLQHLVTSSSMVGE 181 (205)
Q Consensus 104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd--~~V~~~~L~~Lq~LV~~~~~VG~ 181 (205)
.++|.++++|...+..-+.-|...+.++....++.+.|.++.++..+-..|.+.| +++-..++.+|..|+. .+|+
T Consensus 639 ~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~---~~~~ 715 (861)
T 2bpt_A 639 TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIAS---NIGA 715 (861)
T ss_dssp HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHH---HHGG
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHH---Hhhh
Confidence 3456667777544555666677778888888888999999999999999998865 8999999999988864 5799
Q ss_pred chhhHHHhhhhhhhH
Q psy7091 182 ALVPYYKQILPHLNM 196 (205)
Q Consensus 182 ALvPyyRqLLPvlNl 196 (205)
.+.||+.+++|.+--
T Consensus 716 ~~~~~l~~~l~~l~~ 730 (861)
T 2bpt_A 716 DFIPYLNDIMALCVA 730 (861)
T ss_dssp GGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999998753
No 4
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=94.46 E-value=0.014 Score=55.14 Aligned_cols=91 Identities=16% Similarity=0.219 Sum_probs=76.6
Q ss_pred CCCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccc
Q psy7091 102 YQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGE 181 (205)
Q Consensus 102 y~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~ 181 (205)
++..++.++++|.+.+..-+--|-..+..+.+..+..+.|.+|+++..|..+|+..+.+....+++++..|+ +.+|+
T Consensus 440 ~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~---~~~~~ 516 (852)
T 4fdd_A 440 LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLA---DSVGH 516 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---HHHGG
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHH---HHhhh
Confidence 356778888999887777788888888889888778899999999999999999999988888888888886 45777
Q ss_pred chh--hHHHhhhhhhh
Q psy7091 182 ALV--PYYKQILPHLN 195 (205)
Q Consensus 182 ALv--PyyRqLLPvlN 195 (205)
.+. +||.+++|.+.
T Consensus 517 ~~~~~~~~~~l~p~l~ 532 (852)
T 4fdd_A 517 HLNKPEYIQMLMPPLI 532 (852)
T ss_dssp GGCCHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHH
Confidence 774 59999999764
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=94.30 E-value=0.043 Score=51.82 Aligned_cols=94 Identities=12% Similarity=0.184 Sum_probs=74.0
Q ss_pred CCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccc
Q psy7091 103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEA 182 (205)
Q Consensus 103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~A 182 (205)
+.+++++++.+......-+--|..-+.++....++.+.|.+++++..|-++|+..++++-..+..++-.++ ..+|++
T Consensus 628 ~~~~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~alg~i~---~~~~~~ 704 (852)
T 4fdd_A 628 SNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEIS---IQMGIE 704 (852)
T ss_dssp CCHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHH---HHHGGG
T ss_pred CcHHHHHHHHhCCCChhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHH---HHhhHh
Confidence 35678888887554444444555566677777788999999999999999999999999999999988886 456889
Q ss_pred hhhHHHhhhhhhh-Hhhh
Q psy7091 183 LVPYYKQILPHLN-MYKD 199 (205)
Q Consensus 183 LvPyyRqLLPvlN-lfk~ 199 (205)
+-||+.++++.|- ++.+
T Consensus 705 ~~p~~~~il~~L~~~l~~ 722 (852)
T 4fdd_A 705 MQPYIPMVLHQLVEIINR 722 (852)
T ss_dssp GGGGTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 9999999998753 5544
No 6
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=94.29 E-value=0.14 Score=41.00 Aligned_cols=85 Identities=18% Similarity=0.180 Sum_probs=65.7
Q ss_pred CchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccch
Q psy7091 104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEAL 183 (205)
Q Consensus 104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~AL 183 (205)
.++|.+++.+.+.+..-+--|...+..+++..+ +.+++..|..+|.++|+.|-..++..|..++.... -....
T Consensus 98 ~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~-~~~~~ 170 (242)
T 2qk2_A 98 ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQ-PTALN 170 (242)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCC-GGGCC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcC-CCCcc
Confidence 367888888888887777777778887776533 56788889999999999999999999988764421 11245
Q ss_pred hhHHHhhhhhhh
Q psy7091 184 VPYYKQILPHLN 195 (205)
Q Consensus 184 vPyyRqLLPvlN 195 (205)
.+|+.+++|.+-
T Consensus 171 ~~~l~~l~p~l~ 182 (242)
T 2qk2_A 171 KKLLKLLTTSLV 182 (242)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 688999998776
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=93.96 E-value=0.047 Score=53.72 Aligned_cols=91 Identities=10% Similarity=0.093 Sum_probs=77.9
Q ss_pred CCCchhhhhcccccccc-hhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccc
Q psy7091 102 YQYYLPIFFDGLRETEY-PYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVG 180 (205)
Q Consensus 102 y~~yLPiFfdGLrEt~h-PY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG 180 (205)
|++++|.+.++|...+. ..+--|.+++..+....+.++.|.+++++..+..+++..|++|-..+++++..++. ..|
T Consensus 211 ~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~---~~~ 287 (1230)
T 1u6g_C 211 FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVR---RCP 287 (1230)
T ss_dssp CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHH---CTT
T ss_pred HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH---HCh
Confidence 77889999999876543 35556788888888888889999999999999999999999999999999988875 478
Q ss_pred cchhhHHHhhhhhhh
Q psy7091 181 EALVPYYKQILPHLN 195 (205)
Q Consensus 181 ~ALvPyyRqLLPvlN 195 (205)
+.+.||..+++|.+-
T Consensus 288 ~~~~~~l~~li~~ll 302 (1230)
T 1u6g_C 288 KEVYPHVSTIINICL 302 (1230)
T ss_dssp CCCHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHH
Confidence 899999999999763
No 8
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=93.81 E-value=0.037 Score=50.95 Aligned_cols=96 Identities=11% Similarity=0.070 Sum_probs=69.4
Q ss_pred CCCCchhhhh----cccccccc-hhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q psy7091 101 NYQYYLPIFF----DGLRETEY-PYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS 175 (205)
Q Consensus 101 Dy~~yLPiFf----dGLrEt~h-PY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~ 175 (205)
++.+|++.++ +.+..... ..+--+...+..+....++.+.|.+|+++..|...|++.++++...++.++..|+.
T Consensus 590 ~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~- 668 (861)
T 2bpt_A 590 SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISN- 668 (861)
T ss_dssp GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH-
Confidence 3445554444 44443332 23333444556666667778899999999999999999999999999999988864
Q ss_pred CCccccchhhHHHhhhhhhh-Hhhh
Q psy7091 176 SSMVGEALVPYYKQILPHLN-MYKD 199 (205)
Q Consensus 176 ~~~VG~ALvPyyRqLLPvlN-lfk~ 199 (205)
.+|+.+.||..+++|.+- .+.+
T Consensus 669 --~~~~~~~~~~~~l~~~l~~~l~~ 691 (861)
T 2bpt_A 669 --SLEEDFRRYSDAMMNVLAQMISN 691 (861)
T ss_dssp --HTGGGGHHHHHHHHHHHHHHHHC
T ss_pred --HhchhccchHHHHHHHHHHHhCC
Confidence 568899999999998753 4443
No 9
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.64 E-value=0.074 Score=44.93 Aligned_cols=88 Identities=15% Similarity=0.232 Sum_probs=64.1
Q ss_pred CchhhhhcccccccchhHhHHHhHHHHHHHcCC-CceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccc
Q psy7091 104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGK-DKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEA 182 (205)
Q Consensus 104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~-~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~A 182 (205)
..+|.+.++|.+.+--.+.-|-..+-.+.+... +.+-+.+++++..|-.+|+..++.|-..+..+|..++ +..|+.
T Consensus 366 ~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~---~~~~~~ 442 (462)
T 1ibr_B 366 HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC---ELLPEA 442 (462)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH---HHGGGG
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH---Hhcccc
Confidence 455666667776554455555555555554332 4567889999999999999999999999999999985 456666
Q ss_pred h--hhHHHhhhhhh
Q psy7091 183 L--VPYYKQILPHL 194 (205)
Q Consensus 183 L--vPyyRqLLPvl 194 (205)
+ -+|+.+++|.+
T Consensus 443 ~~~~~~l~~ll~~L 456 (462)
T 1ibr_B 443 AINDVYLAPLLQCL 456 (462)
T ss_dssp CCSTTTHHHHHHHH
T ss_pred cccHHHHHHHHHHH
Confidence 5 37888888754
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=92.86 E-value=0.043 Score=50.59 Aligned_cols=90 Identities=20% Similarity=0.300 Sum_probs=71.2
Q ss_pred CCchhhhhcccccc-cchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCCcc
Q psy7091 103 QYYLPIFFDGLRET-EYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALST--RNPEVICETLKVLQHLVTSSSMV 179 (205)
Q Consensus 103 ~~yLPiFfdGLrEt-~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~T--rd~~V~~~~L~~Lq~LV~~~~~V 179 (205)
+.++|.+..+|... ...-+.-|...+.+|....++.+.|.+++++..|-..|++ .+.++...++.++..++. .+
T Consensus 648 ~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~---~~ 724 (876)
T 1qgr_A 648 EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIAL---AI 724 (876)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHH---HH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHH---Hh
Confidence 34556667777765 3445666777888888887788999999999999999987 467888899999888853 56
Q ss_pred ccchhhHHHhhhhhhh
Q psy7091 180 GEALVPYYKQILPHLN 195 (205)
Q Consensus 180 G~ALvPyyRqLLPvlN 195 (205)
|+.+.||+.+++|.+-
T Consensus 725 g~~~~~~l~~~~~~l~ 740 (876)
T 1qgr_A 725 GGEFKKYLEVVLNTLQ 740 (876)
T ss_dssp GGGGGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH
Confidence 8889999999999764
No 11
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=92.83 E-value=0.094 Score=51.57 Aligned_cols=90 Identities=14% Similarity=0.125 Sum_probs=69.3
Q ss_pred CCchhhhhcccccccchhHhHHHhHHHHHHHcCC-------CceecccccchHHHHHhh--cCCCHHHHHHHHHHHHHHH
Q psy7091 103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGK-------DKIVPVLPHLILPIKNAL--STRNPEVICETLKVLQHLV 173 (205)
Q Consensus 103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~-------~KIlPvlPqLI~PiK~AL--~Trd~~V~~~~L~~Lq~LV 173 (205)
+..||.++.++.+...-.+--|...+.++++..+ ..+.|.+++++..+-..| ...|++|-..++++|..|+
T Consensus 518 ~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~ 597 (1230)
T 1u6g_C 518 QALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQII 597 (1230)
T ss_dssp TTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 5667777777766433223346667888887633 478899999999999999 6678899999999999886
Q ss_pred hcCCccccchhhHHHhhhhhhh
Q psy7091 174 TSSSMVGEALVPYYKQILPHLN 195 (205)
Q Consensus 174 ~~~~~VG~ALvPyyRqLLPvlN 195 (205)
..+|+.+.+||.+++|.|.
T Consensus 598 ---~~~g~~~~~~~~~~l~~L~ 616 (1230)
T 1u6g_C 598 ---CNLGDNLGSDLPNTLQIFL 616 (1230)
T ss_dssp ---HHTGGGCCTHHHHHHHHHH
T ss_pred ---HHhCchhhhhHHHHHHHHH
Confidence 4578888899999998764
No 12
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=92.47 E-value=0.13 Score=43.38 Aligned_cols=93 Identities=19% Similarity=0.261 Sum_probs=64.1
Q ss_pred CCchhhhhccccccc-------chhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q psy7091 103 QYYLPIFFDGLRETE-------YPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS 175 (205)
Q Consensus 103 ~~yLPiFfdGLrEt~-------hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~ 175 (205)
..++|.+++.|.+.+ .--+-.|...+..|...-++ .++|.++.-+...|++.|+.+-..++.+|..++
T Consensus 320 ~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~-- 394 (462)
T 1ibr_B 320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL-- 394 (462)
T ss_dssp HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTS--
T ss_pred hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh--
Confidence 456777777776532 23355566666666666555 456678888899999999999999999988875
Q ss_pred CCccc-cchhhHHHhhhhh-hhHhhhcc
Q psy7091 176 SSMVG-EALVPYYKQILPH-LNMYKDLN 201 (205)
Q Consensus 176 ~~~VG-~ALvPyyRqLLPv-lNlfk~~n 201 (205)
+..+ +++-+|..+++|. ++.+.+.+
T Consensus 395 -~~~~~~~~~~~l~~~~~~l~~~l~d~~ 421 (462)
T 1ibr_B 395 -EGPEPSQLKPLVIQAMPTLIELMKDPS 421 (462)
T ss_dssp -SSSCTTTTCTTTTTHHHHHHHGGGCSC
T ss_pred -cCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444 5567777888884 44555443
No 13
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=92.02 E-value=0.14 Score=42.64 Aligned_cols=82 Identities=11% Similarity=0.220 Sum_probs=63.2
Q ss_pred CCCchhhhhcccccccchhHhHHHhHHHHHH----HcCC---Cceeccc-ccchHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy7091 102 YQYYLPIFFDGLRETEYPYKFFASKGIHDLL----ENGK---DKIVPVL-PHLILPIKNALSTRNPEVICETLKVLQHLV 173 (205)
Q Consensus 102 y~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL----~~~~---~KIlPvl-PqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV 173 (205)
.+..|+.++++|.-. .|. .++++-..| ..++ .++.+.+ |++|..+...|+..+++|=..+.++|-.+.
T Consensus 144 l~~ll~~l~~~l~~k-~~~---vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 144 NEDMLKDILEHMKHK-TPQ---IRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp THHHHHHHHHHTTCS-SHH---HHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-ChH---HHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 457788888888655 554 455555444 4455 4677999 999999999999999999999999987764
Q ss_pred hcCCccccc-hhhHHHhh
Q psy7091 174 TSSSMVGEA-LVPYYKQI 190 (205)
Q Consensus 174 ~~~~~VG~A-LvPyyRqL 190 (205)
..||+. +.||..+|
T Consensus 220 ---~~vG~~~~~p~l~~L 234 (249)
T 2qk1_A 220 ---KIFGMNTFVKTLEHL 234 (249)
T ss_dssp ---HHHCSGGGHHHHHHS
T ss_pred ---HHhCHHHHHHHHHHH
Confidence 679985 88888775
No 14
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=91.39 E-value=0.18 Score=46.49 Aligned_cols=92 Identities=14% Similarity=0.120 Sum_probs=68.7
Q ss_pred CchhhhhcccccccchhHhHHHhHHHHHHHcCCCc--eecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC----
Q psy7091 104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDK--IVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSS---- 177 (205)
Q Consensus 104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~K--IlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~---- 177 (205)
..+|.++.+|.+.....+.-|-..+..+.+..+.. .-+.+++++..|-.+|+. ++.|-..++.+|..|+....
T Consensus 408 ~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~ 486 (876)
T 1qgr_A 408 QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAAD 486 (876)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhhccc
Confidence 35778888887765555667777777777764433 347888999999999987 48898899999998876432
Q ss_pred -------ccccchhhHHHhhhhhhhH
Q psy7091 178 -------MVGEALVPYYKQILPHLNM 196 (205)
Q Consensus 178 -------~VG~ALvPyyRqLLPvlNl 196 (205)
..++.+.||+.+|+|.|--
T Consensus 487 ~~~~~~~~~~~~l~~~~~~il~~L~~ 512 (876)
T 1qgr_A 487 VADDQEEPATYCLSSSFELIVQKLLE 512 (876)
T ss_dssp CTTSCCCCCCCSSTTTHHHHHHHHHH
T ss_pred cccccccccchhhhHhHHHHHHHHHH
Confidence 2346799999999998753
No 15
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=91.26 E-value=0.4 Score=45.62 Aligned_cols=90 Identities=10% Similarity=0.165 Sum_probs=72.6
Q ss_pred CCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCCccc
Q psy7091 103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALST--RNPEVICETLKVLQHLVTSSSMVG 180 (205)
Q Consensus 103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~T--rd~~V~~~~L~~Lq~LV~~~~~VG 180 (205)
...|+.+++||.+ ..-+--|-..+..+.+..++.+.|.+++++.-+-.+++. -+.+.....++++..++...+ .
T Consensus 528 ~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~--~ 603 (963)
T 2x19_B 528 NSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ--V 603 (963)
T ss_dssp TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC--H
T ss_pred HHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC--H
Confidence 5678888889976 455566777788888888888999999999999999986 357888888999988875433 4
Q ss_pred cchhhHHHhhhhhhhH
Q psy7091 181 EALVPYYKQILPHLNM 196 (205)
Q Consensus 181 ~ALvPyyRqLLPvlNl 196 (205)
+...||+.++++++.-
T Consensus 604 ~~~~~~~~~l~~~l~~ 619 (963)
T 2x19_B 604 EEILKNLHSLISPYIQ 619 (963)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8899999999988763
No 16
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=85.82 E-value=0.59 Score=44.78 Aligned_cols=88 Identities=15% Similarity=0.171 Sum_probs=71.0
Q ss_pred CCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCCccc
Q psy7091 103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALST--RNPEVICETLKVLQHLVTSSSMVG 180 (205)
Q Consensus 103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~T--rd~~V~~~~L~~Lq~LV~~~~~VG 180 (205)
...|+.+++|| . .+..--|-..+.++.+..+..+.|.+++|+.-+-.+++. -+.+.....++++-.++...+ +
T Consensus 545 ~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~--~ 619 (971)
T 2x1g_F 545 PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR--P 619 (971)
T ss_dssp HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC--T
T ss_pred HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC--H
Confidence 45667777888 2 556677778888999888889999999999999999998 467888999999888876533 5
Q ss_pred cchhhHHHhhhhhhh
Q psy7091 181 EALVPYYKQILPHLN 195 (205)
Q Consensus 181 ~ALvPyyRqLLPvlN 195 (205)
+...||+.++++++.
T Consensus 620 ~~~~~~~~~ll~~l~ 634 (971)
T 2x1g_F 620 EEIPKYLDIIVSPCF 634 (971)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888999999876654
No 17
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=84.39 E-value=2 Score=35.24 Aligned_cols=94 Identities=12% Similarity=0.224 Sum_probs=53.0
Q ss_pred chhhhhc-ccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccch
Q psy7091 105 YLPIFFD-GLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEAL 183 (205)
Q Consensus 105 yLPiFfd-GLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~AL 183 (205)
++|.++| ||-+++..-+--|.+.+.++.+... ....++.-|-.+|.++||.+...+|..|..++..-..-.-..
T Consensus 103 ~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~-----~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~ 177 (278)
T 4ffb_C 103 WTPLLVEKGLTSSRATTKTQSMSCILSLCGLDT-----SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNV 177 (278)
T ss_dssp HHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSS-----SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCH
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcC-----cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCc
Confidence 3444444 3445554444445555555554422 123345566689999999999999999999886522111122
Q ss_pred hhHHHhhhhhhh-Hhhhcccc
Q psy7091 184 VPYYKQILPHLN-MYKDLNNR 203 (205)
Q Consensus 184 vPyyRqLLPvlN-lfk~~n~n 203 (205)
-+....+++.+- ++-+.+.+
T Consensus 178 k~~l~~i~~~l~k~l~d~~~~ 198 (278)
T 4ffb_C 178 QTFLPELLKHVPQLAGHGDRN 198 (278)
T ss_dssp HHHHHHHGGGHHHHHTCSSHH
T ss_pred hhHHHHHHHHHHHHHhCCcHH
Confidence 334555555443 44444444
No 18
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=78.66 E-value=2 Score=42.09 Aligned_cols=92 Identities=13% Similarity=0.173 Sum_probs=70.5
Q ss_pred CCchhhhhcccccccchhHhHHHhHHHHHHHcCCCcee--------cccccchHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q psy7091 103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIV--------PVLPHLILPIKNALSTRNPEVICETLKVLQHLVT 174 (205)
Q Consensus 103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIl--------PvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~ 174 (205)
...|+.+++||.+...+-+--|-..+.-+.+..+..++ |.+++|+.-+-.+++.-+.+-....++++..++.
T Consensus 539 ~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 539 RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34556677788887777777777777777777665555 9999999999999988788778888899888876
Q ss_pred cCCccccchhhHHHhhhhhhh
Q psy7091 175 SSSMVGEALVPYYKQILPHLN 195 (205)
Q Consensus 175 ~~~~VG~ALvPyyRqLLPvlN 195 (205)
..+ --+...+|+.+|++.++
T Consensus 619 ~~~-~~~~~~~~~~~l~~~~~ 638 (1049)
T 3m1i_C 619 EER-SVAERNRLLSDLMQLPN 638 (1049)
T ss_dssp TCC-SHHHHHHHHHHHTHHHH
T ss_pred cCC-CHHHHHHHHHHHHHHHH
Confidence 543 11568899999998764
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=75.80 E-value=1.2 Score=38.73 Aligned_cols=86 Identities=16% Similarity=0.136 Sum_probs=56.4
Q ss_pred CCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccc
Q psy7091 103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEA 182 (205)
Q Consensus 103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~A 182 (205)
+.++|.++..|.+.+..-+--|...+..++..-+... .++.++..|...++..+..+-..++.++..|+. .+|+.
T Consensus 440 ~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~---~~~~~ 514 (588)
T 1b3u_A 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW--AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE---VCGQD 514 (588)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH--HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh--HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH---hcCHH
Confidence 3577888888887776677777788877777633221 245556666666777777777777777777643 34543
Q ss_pred hhhHHHhhhhhhh
Q psy7091 183 LVPYYKQILPHLN 195 (205)
Q Consensus 183 LvPyyRqLLPvlN 195 (205)
.|..+++|.+-
T Consensus 515 --~~~~~~~~~l~ 525 (588)
T 1b3u_A 515 --ITTKHMLPTVL 525 (588)
T ss_dssp --HHHHHTHHHHH
T ss_pred --HHHHHHHHHHH
Confidence 35666666553
No 20
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=74.64 E-value=10 Score=30.91 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=49.5
Q ss_pred CCCCCchhhhhcccccccchhHhHHHhHHHHHHHcCC-----CceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q psy7091 100 LNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGK-----DKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVT 174 (205)
Q Consensus 100 LDy~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~-----~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~ 174 (205)
-||.- || |-|.|..+.==.|-=|.+.+..+++... +-.++.+-.++.-+|.++.-.|..|...+|++|+.++.
T Consensus 7 ~d~sk-lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~ 84 (278)
T 4ffb_C 7 VDYTT-LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLID 84 (278)
T ss_dssp ----C-CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred hhhhc-CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 34442 55 5577776665666656666666665532 34555677888899999999999999999999999986
Q ss_pred c
Q psy7091 175 S 175 (205)
Q Consensus 175 ~ 175 (205)
.
T Consensus 85 ~ 85 (278)
T 4ffb_C 85 A 85 (278)
T ss_dssp T
T ss_pred H
Confidence 4
No 21
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=72.76 E-value=4.8 Score=34.96 Aligned_cols=88 Identities=14% Similarity=0.144 Sum_probs=61.7
Q ss_pred CCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccc
Q psy7091 103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEA 182 (205)
Q Consensus 103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~A 182 (205)
+..+|.+.+.+.+...-.|-.|...+.++.+.-+.. ..+++++..|-+.|+..+++|-..++++|..++ ..+|+.
T Consensus 479 ~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~--~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~---~~~~~~ 553 (588)
T 1b3u_A 479 ATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD--ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG---PILDNS 553 (588)
T ss_dssp HHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH--HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHG---GGSCHH
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHH---HHhchh
Confidence 567888877666555555666666777776552222 267889999999999999999999999998885 445665
Q ss_pred hhhHHHhhhhhhhHh
Q psy7091 183 LVPYYKQILPHLNMY 197 (205)
Q Consensus 183 LvPyyRqLLPvlNlf 197 (205)
... .+++|.+.-.
T Consensus 554 ~~~--~~~~p~l~~l 566 (588)
T 1b3u_A 554 TLQ--SEVKPILEKL 566 (588)
T ss_dssp HHH--HHHHHHHHHH
T ss_pred hhH--HHHHHHHHHH
Confidence 432 4667766543
No 22
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=66.45 E-value=3.3 Score=40.03 Aligned_cols=91 Identities=15% Similarity=0.205 Sum_probs=66.2
Q ss_pred CCCchhhhhcccccccchhHhHHHhHHHHHHHc-----------CCCceecccccchHHHHHhhcCCC---H--HHHHHH
Q psy7091 102 YQYYLPIFFDGLRETEYPYKFFASKGIHDLLEN-----------GKDKIVPVLPHLILPIKNALSTRN---P--EVICET 165 (205)
Q Consensus 102 y~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~-----------~~~KIlPvlPqLI~PiK~AL~Trd---~--~V~~~~ 165 (205)
+...|+.++.||....-+-+--|-..+..+++. ..+-+.|.+++|+.-|-.+|+..+ + +.....
T Consensus 494 l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l 573 (960)
T 1wa5_C 494 LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFL 573 (960)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHH
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHH
Confidence 466788888999876666667777788887764 134588999999999999998751 1 123456
Q ss_pred HHHHHHHHhcCCccccchhhHHHhhhhhhh
Q psy7091 166 LKVLQHLVTSSSMVGEALVPYYKQILPHLN 195 (205)
Q Consensus 166 L~~Lq~LV~~~~~VG~ALvPyyRqLLPvlN 195 (205)
+++|..++. ..|+++.||+-++++.|-
T Consensus 574 ~~al~~vv~---~~~~~~~p~~~~l~~~L~ 600 (960)
T 1wa5_C 574 MRSIFRVLQ---TSEDSIQPLFPQLLAQFI 600 (960)
T ss_dssp HHHHHHHHH---HHTTTTGGGHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHhhhhHHHHHHHHHH
Confidence 666666654 447889999999988764
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=64.65 E-value=5.3 Score=35.29 Aligned_cols=75 Identities=23% Similarity=0.279 Sum_probs=56.1
Q ss_pred CCchhhhhcccccccchhHhHHHhHHHHHHHcCCC--ceeccc--ccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC
Q psy7091 103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKD--KIVPVL--PHLILPIKNALSTRNPEVICETLKVLQHLVTSSS 177 (205)
Q Consensus 103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~--KIlPvl--PqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~ 177 (205)
+..+|.+++-|...+...+--|-..+..|...+.. .....+ ..+|.+|-..|.+.|++|...++.+|..|+..++
T Consensus 382 ~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~ 460 (530)
T 1wa5_B 382 ANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGE 460 (530)
T ss_dssp TTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhh
Confidence 35788888888776666777788888888876543 222222 2478888889999999999999999999987544
No 24
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=60.74 E-value=21 Score=32.54 Aligned_cols=70 Identities=16% Similarity=0.265 Sum_probs=50.7
Q ss_pred chhhhhcccccccchh-HhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC
Q psy7091 105 YLPIFFDGLRETEYPY-KFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSS 177 (205)
Q Consensus 105 yLPiFfdGLrEt~hPY-~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~ 177 (205)
.+|.+...|. ..+|| |.-|..++..+....++-+-. +.++..|+.+|+..|+.|...++.+|..+...++
T Consensus 122 l~~~l~~~L~-d~~~~VRk~A~~al~~i~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 122 LCEPLRKCLK-DEDPYVRKTAAVCVAKLHDINAQMVED--QGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHSS-CSCHHHHHHHHHHHHHHHHSSCCCHHH--HHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHcC-CCChHHHHHHHHHHHHHHhhChhhccc--ccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 3455666665 45676 566667777777766552211 3588899999999999999999999999876543
No 25
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=60.69 E-value=7.6 Score=37.49 Aligned_cols=92 Identities=16% Similarity=0.290 Sum_probs=63.4
Q ss_pred CCCCchhhhhcccccccch---------hHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcC-----CCHHHHHHHH
Q psy7091 101 NYQYYLPIFFDGLRETEYP---------YKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALST-----RNPEVICETL 166 (205)
Q Consensus 101 Dy~~yLPiFfdGLrEt~hP---------Y~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~T-----rd~~V~~~~L 166 (205)
+..+|++..++.|-..-+= -.-.+..++..++...++.+.|.++.|+..|...|+. .|+......+
T Consensus 541 ~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~ 620 (960)
T 1wa5_C 541 DISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTF 620 (960)
T ss_dssp GTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 3567887666654322110 1234677888888888899999999999888877754 4777777889
Q ss_pred HHHHHHHhcCCccc-cchhhHHHhhhhhhh
Q psy7091 167 KVLQHLVTSSSMVG-EALVPYYKQILPHLN 195 (205)
Q Consensus 167 ~~Lq~LV~~~~~VG-~ALvPyyRqLLPvlN 195 (205)
++|..+++. +| +...++..+++|++.
T Consensus 621 e~l~~l~~~---~~~~~~~~~~~~~~p~~~ 647 (960)
T 1wa5_C 621 ESIGAILNY---TQRQNLPLLVDSMMPTFL 647 (960)
T ss_dssp HHHHHHHHT---SCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHhc---CCcchHHHHHHHHHHHHH
Confidence 999988876 44 345556667777654
No 26
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=58.20 E-value=5.6 Score=34.15 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=48.8
Q ss_pred CCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHH
Q psy7091 103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKV 168 (205)
Q Consensus 103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~ 168 (205)
..+||-|++|+-+..+.=..-.++=+-++|+.+..+=.-++++++..|..-|+..|+.|+..+..+
T Consensus 48 p~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~ 113 (257)
T 3gs3_A 48 AELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQA 113 (257)
T ss_dssp GGGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 348999999999976553333344455566554433457899999999999999999999998874
No 27
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=55.93 E-value=22 Score=31.31 Aligned_cols=73 Identities=7% Similarity=0.045 Sum_probs=52.2
Q ss_pred CchhhhhcccccccchhHhHHHhHHHHHHHcC-CCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7091 104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENG-KDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSS 176 (205)
Q Consensus 104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~-~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~ 176 (205)
..+|.+++=|.+.+...+--|-..+..|.... ...-......++.+|-..|.+.|++|...++.+|..|+..+
T Consensus 215 ~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~ 288 (530)
T 1wa5_B 215 NAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP 288 (530)
T ss_dssp TCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC
T ss_pred CcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC
Confidence 45666666666644444555556666666543 44445566788889999999999999999999999997543
No 28
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=54.13 E-value=8.7 Score=33.71 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=54.5
Q ss_pred CchhhhhcccccccchhHhHHHhHHHHHHHcCCCceeccc--ccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC
Q psy7091 104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVL--PHLILPIKNALSTRNPEVICETLKVLQHLVTSSS 177 (205)
Q Consensus 104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvl--PqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~ 177 (205)
..+|.+++-|...+.--+--|...+..|...+.......+ -.+|.+|-..|.+.|+++...++.+|..|+..++
T Consensus 371 ~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~ 446 (528)
T 4b8j_A 371 GIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGE 446 (528)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 5677777777666555566666677777766544333333 4678889999999999999999999999986543
No 29
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=53.82 E-value=19 Score=30.99 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=51.4
Q ss_pred CCchhhhhcccccccchhHhHHHhHHHHHHHc-CCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCc
Q psy7091 103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLEN-GKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSM 178 (205)
Q Consensus 103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~-~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~ 178 (205)
..+||.++|=+-+.++++|=-+++-++.|.+. ..++++ .-+..++.++|..+-..+|+.|-.|+....+
T Consensus 131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~-------~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~ 200 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMT-------PMLLDALKSKNARQRSECLLVIEYYITNAGI 200 (266)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHH-------HHHHHGGGCSCHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHHHHH-------HHHHHHHccCCHHHHHHHHHHHHHHHHhcCC
Confidence 36789999999899988887777766666554 223443 3466789999999999999998888765433
No 30
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=53.31 E-value=11 Score=31.66 Aligned_cols=73 Identities=11% Similarity=0.083 Sum_probs=50.9
Q ss_pred Cchhhhhcccccc-cchhHhHHHhHHHHHHHcCCCceec-ccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7091 104 YYLPIFFDGLRET-EYPYKFFASKGIHDLLENGKDKIVP-VLPHLILPIKNALSTRNPEVICETLKVLQHLVTSS 176 (205)
Q Consensus 104 ~yLPiFfdGLrEt-~hPY~FlA~~G~~dLL~~~~~KIlP-vlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~ 176 (205)
..+|.+++.|... ....+.-|-..+..+.....+..-. +-..+|.++-..|.+.|+++-..++.+|..|+..+
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~ 138 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDS 138 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCC
Confidence 6899999999877 4445666666666655422111111 12457788888999999999999999999987643
No 31
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=52.50 E-value=27 Score=34.71 Aligned_cols=92 Identities=13% Similarity=0.141 Sum_probs=68.8
Q ss_pred CCchhhhhc--ccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCC-----CH--------H-------
Q psy7091 103 QYYLPIFFD--GLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTR-----NP--------E------- 160 (205)
Q Consensus 103 ~~yLPiFfd--GLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Tr-----d~--------~------- 160 (205)
.+.|..|++ |+......-+-=|-..+..+.+..+..+.|.++.++.-+...|..+ +. +
T Consensus 534 ~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (980)
T 3ibv_A 534 PALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVSPVTDMDAPVPTLNSSIRNSDF 613 (980)
T ss_dssp HHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCCCCCC--CSSCCHHHHHHTTTH
T ss_pred HHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCCCCCcccccccchhhhcccCCc
Confidence 677889999 9998877788888889999999999999999999999999988842 21 1
Q ss_pred -HHHHHHHHHHHHHhcCCccccchhhHHHhhhhhh
Q psy7091 161 -VICETLKVLQHLVTSSSMVGEALVPYYKQILPHL 194 (205)
Q Consensus 161 -V~~~~L~~Lq~LV~~~~~VG~ALvPyyRqLLPvl 194 (205)
--....+++..|+.+...-.+.-.-|.++|++++
T Consensus 614 ~~ql~L~eaig~li~~~~~~~e~~~~~l~~ll~pl 648 (980)
T 3ibv_A 614 NSQLYLFETVGVLISSGNLTPEEQALYCDSLINAL 648 (980)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence 2233556666666554433456667888888663
No 32
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=51.93 E-value=36 Score=28.37 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=53.7
Q ss_pred Cchhhhhccccc-ccchhHhHHHhHHHHHHHcC-CCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q psy7091 104 YYLPIFFDGLRE-TEYPYKFFASKGIHDLLENG-KDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS 175 (205)
Q Consensus 104 ~yLPiFfdGLrE-t~hPY~FlA~~G~~dLL~~~-~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~ 175 (205)
..+|.+.+-|.. .....+-.|...+..|.... ...-...+..++.+|-..|.+.|+++...++.+|..|+..
T Consensus 149 ~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 222 (450)
T 2jdq_A 149 NILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDG 222 (450)
T ss_dssp TCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCC
Confidence 457777777774 45566666777777777553 3333455688899999999999999999999999988653
No 33
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=49.07 E-value=21 Score=36.32 Aligned_cols=84 Identities=17% Similarity=0.273 Sum_probs=65.3
Q ss_pred chhhhhcccccccchhHhHHHhHHHHHHHc-CCCceecccccchHHHHHhhcCC-CHHHHHHHHHHHHHHHhcCCccccc
Q psy7091 105 YLPIFFDGLRETEYPYKFFASKGIHDLLEN-GKDKIVPVLPHLILPIKNALSTR-NPEVICETLKVLQHLVTSSSMVGEA 182 (205)
Q Consensus 105 yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~-~~~KIlPvlPqLI~PiK~AL~Tr-d~~V~~~~L~~Lq~LV~~~~~VG~A 182 (205)
+||..+|.+-++..+-+--|..+...+... .++-+--+||.|+ .+|.+. ....-..+|++|..|+..+ -++
T Consensus 96 ~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~kw~~k~~~l~~~~~~~~~~---~~~ 168 (986)
T 2iw3_A 96 LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIKALLPHLT----NAIVETNKWQEKIAILAAFSAMVDAA---KDQ 168 (986)
T ss_dssp THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHH----HHHHHCCCHHHHHHHHHHHHHHHHHS---HHH
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----HHhccccchHHHHHHHHHHHHHHHHh---HHH
Confidence 469999999999999999999999999987 3344444455554 555444 6899999999999998754 466
Q ss_pred hhhHHHhhhhhhh
Q psy7091 183 LVPYYKQILPHLN 195 (205)
Q Consensus 183 LvPyyRqLLPvlN 195 (205)
+--++..|.|++.
T Consensus 169 ~~~~~~~~~p~~~ 181 (986)
T 2iw3_A 169 VALRMPELIPVLS 181 (986)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHhccchhcchH
Confidence 6678888888875
No 34
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=47.34 E-value=73 Score=23.97 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=15.3
Q ss_pred cchHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy7091 145 HLILPIKNALSTRNPEVICETLKVLQHL 172 (205)
Q Consensus 145 qLI~PiK~AL~Trd~~V~~~~L~~Lq~L 172 (205)
+.+..|...|+..|+.|-..++++|..+
T Consensus 143 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 143 RAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3444555555555555555555555444
No 35
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=45.87 E-value=11 Score=34.80 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=61.9
Q ss_pred CchhhhhcccccccchhHhHHHhHHHHHHHcCCC---ceecccccchHHHHHhhc-----------CCCHHHHHHHHHHH
Q psy7091 104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKD---KIVPVLPHLILPIKNALS-----------TRNPEVICETLKVL 169 (205)
Q Consensus 104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~---KIlPvlPqLI~PiK~AL~-----------Trd~~V~~~~L~~L 169 (205)
.|++..-+-|.+.++--..-|...+.++.+..++ .+.+++|+|+.-|+..+. ..|+-.-+..|++|
T Consensus 179 ~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L 258 (618)
T 1w63_A 179 MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLL 258 (618)
T ss_dssp GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHH
Confidence 6788888888776665666666777776654332 456788888888888764 35888889999999
Q ss_pred HHHHhcCCccccchhhHHHhhh
Q psy7091 170 QHLVTSSSMVGEALVPYYKQIL 191 (205)
Q Consensus 170 q~LV~~~~~VG~ALvPyyRqLL 191 (205)
+.++...+-..+.+.++..+++
T Consensus 259 ~~l~~~~~~~~~~~~~~L~~l~ 280 (618)
T 1w63_A 259 RILGRNDDDSSEAMNDILAQVA 280 (618)
T ss_dssp HHHTTTCHHHHHTTHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHH
Confidence 9987654444555666666654
No 36
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=45.70 E-value=20 Score=27.64 Aligned_cols=75 Identities=17% Similarity=0.295 Sum_probs=52.9
Q ss_pred CCCCchhhhhcccccccchhHhHHHhHHHHHHHcCCCce-ecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q psy7091 101 NYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKI-VPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS 175 (205)
Q Consensus 101 Dy~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KI-lPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~ 175 (205)
|+....+.|++.|.-.+.--+.-|-+.+..++....+.+ .=+=...|.+|-..|.+.|+++...++.+|..|+..
T Consensus 9 ~~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~ 84 (252)
T 4db8_A 9 HHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 84 (252)
T ss_dssp CTTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred cccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence 455667888888888777777777777766665411110 011124667777889999999999999999999764
No 37
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=45.68 E-value=19 Score=34.18 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=46.2
Q ss_pred HHHHHcCCCcee--cc-cccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC---CccccchhhHHHhhhhh
Q psy7091 129 HDLLENGKDKIV--PV-LPHLILPIKNALSTRNPEVICETLKVLQHLVTSS---SMVGEALVPYYKQILPH 193 (205)
Q Consensus 129 ~dLL~~~~~KIl--Pv-lPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~---~~VG~ALvPyyRqLLPv 193 (205)
.++++.....++ |. +..++.-+-.+|...|.++...+++.|..|+... +.+.+.+..|+.+|+..
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~ 868 (963)
T 2x19_B 798 AQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIA 868 (963)
T ss_dssp HHHHHHCGGGGGCTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHH
T ss_pred HHHHHhCcHHHcCCcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 444444555555 55 6777777888999999999999999999998643 34444556677776643
No 38
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=45.09 E-value=30 Score=32.24 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=52.8
Q ss_pred Cchhhhhcccc-cccchh-HhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC
Q psy7091 104 YYLPIFFDGLR-ETEYPY-KFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSS 177 (205)
Q Consensus 104 ~yLPiFfdGLr-Et~hPY-~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~ 177 (205)
.++|-...+|. ...+|| |--|.-++.-+.+..++-+-+ +.++.-|+..|+.+|+.|...++.+|..++..++
T Consensus 146 ~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 146 AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLVPM--GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGCCC--CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhcCc--hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 45555666663 567787 345666667777766654432 5899999999999999999999999999876543
No 39
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=44.67 E-value=61 Score=24.39 Aligned_cols=29 Identities=17% Similarity=0.176 Sum_probs=18.4
Q ss_pred ccchHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy7091 144 PHLILPIKNALSTRNPEVICETLKVLQHL 172 (205)
Q Consensus 144 PqLI~PiK~AL~Trd~~V~~~~L~~Lq~L 172 (205)
+..+..|..+|+..|++|-..++.+|..+
T Consensus 80 ~~~~~~L~~~l~~~~~~vr~~a~~aL~~~ 108 (211)
T 3ltm_A 80 ERAVEPLIKALKDEDGWVRQSAAVALGQI 108 (211)
T ss_dssp GGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 34555666667777777766666666554
No 40
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=41.43 E-value=46 Score=29.03 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=48.3
Q ss_pred chhhhhcccccccch-hHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q psy7091 105 YLPIFFDGLRETEYP-YKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS 175 (205)
Q Consensus 105 yLPiFfdGLrEt~hP-Y~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~ 175 (205)
.+|.+++-|.+..++ .+--|-..+..|..........++..+|..|-..|.+.|+++...++.+|..|+..
T Consensus 203 ~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 274 (528)
T 4b8j_A 203 ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDG 274 (528)
T ss_dssp CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSS
T ss_pred cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcC
Confidence 466666666444333 23334444444444444455556788889999999999999999999999988643
No 41
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=40.79 E-value=69 Score=23.88 Aligned_cols=28 Identities=18% Similarity=0.204 Sum_probs=13.1
Q ss_pred cchHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy7091 145 HLILPIKNALSTRNPEVICETLKVLQHL 172 (205)
Q Consensus 145 qLI~PiK~AL~Trd~~V~~~~L~~Lq~L 172 (205)
..+..|...|+..|+.|-..++.+|..+
T Consensus 138 ~~~~~L~~~l~d~~~~vr~~A~~aL~~~ 165 (201)
T 3ltj_A 138 RAVEPLIKALKDEDGWVRQSAADALGEI 165 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3344444445545555555555444333
No 42
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=39.96 E-value=28 Score=34.97 Aligned_cols=92 Identities=12% Similarity=0.154 Sum_probs=63.2
Q ss_pred CCchhhhhcccccccchhHhHHHhHHHHHHHcCCCce--------ecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHh
Q psy7091 103 QYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKI--------VPVLPHLILPIKNALSTRNPEVICETLKVLQHLVT 174 (205)
Q Consensus 103 ~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KI--------lPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~ 174 (205)
.+.|..+|+||.|...--.-.|-..+..+.+..+... -|.+++++.-+-.++..-+++-.....+++..+++
T Consensus 539 ~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~ 618 (1023)
T 4hat_C 539 RTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1023)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4556667888876643344445555555555433333 57899999999999988889999999999999986
Q ss_pred cCCccccchhhHHHhhhhhhh
Q psy7091 175 SSSMVGEALVPYYKQILPHLN 195 (205)
Q Consensus 175 ~~~~VG~ALvPyyRqLLPvlN 195 (205)
..+ -.++...|..+|++.++
T Consensus 619 ~~~-~~~~~~~~l~~L~~~~~ 638 (1023)
T 4hat_C 619 EER-SVAERNRLLSDLMQLPN 638 (1023)
T ss_dssp TCC-SHHHHHHHHHHHTHHHH
T ss_pred hCC-CHhhHHHHHHHHHHhHH
Confidence 533 22335558888887766
No 43
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=39.51 E-value=22 Score=31.73 Aligned_cols=78 Identities=19% Similarity=0.320 Sum_probs=51.9
Q ss_pred CchhhhhcccccccchhHhHHHhHHHHHHHcCCCceeccc--ccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccc
Q psy7091 104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVL--PHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGE 181 (205)
Q Consensus 104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvl--PqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~ 181 (205)
-.+|.+++-|+..+.--+--|-..+..|...+....+-.| ...|.||-.-|.+.|++++..+|++|..|.+.++-+|+
T Consensus 358 g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~ 437 (510)
T 3ul1_B 358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 437 (510)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccc
Confidence 4677777777766655555555555555544332111111 23577778889999999999999999999887666654
No 44
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=39.04 E-value=29 Score=26.03 Aligned_cols=72 Identities=17% Similarity=0.222 Sum_probs=47.2
Q ss_pred chhhhhcccccccchhHhHHHhHHHHHHHcCCCceec-ccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7091 105 YLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVP-VLPHLILPIKNALSTRNPEVICETLKVLQHLVTSS 176 (205)
Q Consensus 105 yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlP-vlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~ 176 (205)
.+|.+++-|...+..-+.-|-..+..|.....+.+-- +=..+|.+|-..|.+.|+++...++.+|..|+..+
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~ 169 (210)
T 4db6_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 169 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 5677777777665444555555555554322221111 12456777888888999999999999999998653
No 45
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=38.07 E-value=21 Score=31.87 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=51.3
Q ss_pred CchhhhhcccccccchhHhHHHhHHHHHHHcCCCceec-cc-ccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCcccc
Q psy7091 104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVP-VL-PHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGE 181 (205)
Q Consensus 104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlP-vl-PqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~ 181 (205)
-.+|.+++-|...+..-+--|-..+..|...+...-+- ++ --.|.||-.-|.+.|++++..+|++|..|.+.++..|+
T Consensus 377 g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~ 456 (529)
T 3tpo_A 377 GLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 456 (529)
T ss_dssp THHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccC
Confidence 46677777776666555555555555555443321111 11 12467778889999999999999999999877666654
No 46
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=37.63 E-value=22 Score=26.74 Aligned_cols=70 Identities=16% Similarity=0.100 Sum_probs=48.7
Q ss_pred CchhhhhcccccccchhHhHHHhHHHHHHHcCC-CceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy7091 104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGK-DKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLV 173 (205)
Q Consensus 104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~-~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV 173 (205)
..+|.+++-|...+.--+--|-..+..|..... .+..-+-...|..|...|.+.|+++-..++.+|..|+
T Consensus 138 ~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~ 208 (210)
T 4db6_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208 (210)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence 467777777776655555666666666665422 2222223356778888999999999999999998884
No 47
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=36.93 E-value=13 Score=34.73 Aligned_cols=98 Identities=12% Similarity=0.116 Sum_probs=67.1
Q ss_pred ccCCCCCCCCchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCC-------------CHHH
Q psy7091 95 EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTR-------------NPEV 161 (205)
Q Consensus 95 v~~e~LDy~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Tr-------------d~~V 161 (205)
.+|+.+++..+++.+.+-|.|.++--..-|..-+.|+....++...+.+|+++.-|++-+... ||=.
T Consensus 178 ~~p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~ 257 (621)
T 2vgl_A 178 TSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL 257 (621)
T ss_dssp HCGGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH
T ss_pred hChhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH
Confidence 467777778899999998877665445555556677777666667788999998888766532 6778
Q ss_pred HHHHHHHHHHHHhcC-CccccchhhHHHhhhh
Q psy7091 162 ICETLKVLQHLVTSS-SMVGEALVPYYKQILP 192 (205)
Q Consensus 162 ~~~~L~~Lq~LV~~~-~~VG~ALvPyyRqLLP 192 (205)
-+..|+.|+.+.... +-..+.+.....+++.
T Consensus 258 qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~ 289 (621)
T 2vgl_A 258 SVKLLRLLQCYPPPEDPAVRGRLTECLETILN 289 (621)
T ss_dssp HHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 888888887775432 2334445555555553
No 48
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=36.85 E-value=21 Score=27.51 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=47.8
Q ss_pred CchhhhhcccccccchhHhHHHhHHHHHHHcCCCceec-ccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7091 104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVP-VLPHLILPIKNALSTRNPEVICETLKVLQHLVTSS 176 (205)
Q Consensus 104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlP-vlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~ 176 (205)
..+|.+++-|...+..-+.-|-..+..|.....+..-- +-..+|.+|-..|.+.|+++...++.+|..|+..+
T Consensus 138 ~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 211 (252)
T 4db8_A 138 GALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 211 (252)
T ss_dssp THHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC
Confidence 35677777776655445555555555554332221111 12567778888999999999999999999997543
No 49
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=36.58 E-value=7.2 Score=35.69 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=35.0
Q ss_pred cCCCCCCCCchhhhhcccccccchhHhHHHhHHHHHHHcCCCc-eecccccchHHHHHhhcCCCHHH
Q psy7091 96 DIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDK-IVPVLPHLILPIKNALSTRNPEV 161 (205)
Q Consensus 96 ~~e~LDy~~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~K-IlPvlPqLI~PiK~AL~Trd~~V 161 (205)
+++.++-..+++.+.+-|.+.++=-+.-|...+.++....++. .+++.++.+..|=+.|+..|+-.
T Consensus 152 ~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~ 218 (591)
T 2vgl_B 152 NAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWG 218 (591)
T ss_dssp SCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHH
T ss_pred ChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchH
Confidence 4454443467888888887665544555556666665554333 34444444444433333333333
No 50
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=35.77 E-value=23 Score=35.96 Aligned_cols=74 Identities=26% Similarity=0.343 Sum_probs=51.1
Q ss_pred chhhhhcccccccchhHhHHHhHHHHHHHc--CCCceecccccchHHHHHhhcC-CCHHHHHHHHHHHHHHHhcCCc
Q psy7091 105 YLPIFFDGLRETEYPYKFFASKGIHDLLEN--GKDKIVPVLPHLILPIKNALST-RNPEVICETLKVLQHLVTSSSM 178 (205)
Q Consensus 105 yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~--~~~KIlPvlPqLI~PiK~AL~T-rd~~V~~~~L~~Lq~LV~~~~~ 178 (205)
..|++--||+|.+-+-.==+.-=+..|.+. .+.-+-|.||+|.+.++++.++ .|||+=+.+-+++..|...+..
T Consensus 252 ~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 252 MVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 467777788877666551111124455554 5567889999999999998877 7998877777777767555443
No 51
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=33.47 E-value=25 Score=32.01 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=47.8
Q ss_pred CchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHH
Q psy7091 104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKV 168 (205)
Q Consensus 104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~ 168 (205)
.+|+-|++-+.|..+.=..-.++=+-++|+.+..+=.-.+++++..|..-|+..|+.|+..+..+
T Consensus 59 sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~el~~~~l~~L~~LL~d~d~~V~K~~I~~ 123 (386)
T 3o2t_A 59 TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLIANLNMLLRDENVNVVKKAILT 123 (386)
T ss_dssp GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 38888999888876653333455555666554445566689999999999999999999888764
No 52
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=33.34 E-value=71 Score=28.42 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=38.7
Q ss_pred ccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCCccccchhhHHHhhhhhhhHhhhcccc
Q psy7091 144 PHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNNR 203 (205)
Q Consensus 144 PqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~~VG~ALvPyyRqLLPvlNlfk~~n~n 203 (205)
|+.|.-|=.+|+++++.+...++++|-.++..++.-| .+..+|-.+.-|+.++.+
T Consensus 161 ~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~g-----G~~~VL~Al~~~~~~~e~ 215 (383)
T 3eg5_B 161 EEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPED-----MNERVLEAMTERAEMDEV 215 (383)
T ss_dssp SSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTT-----HHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCC-----cHHHHHHHHHHHHHhCCC
Confidence 4567777789999999999999999988876543222 355666666666554433
No 53
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=32.33 E-value=1.1e+02 Score=22.85 Aligned_cols=28 Identities=18% Similarity=0.137 Sum_probs=17.7
Q ss_pred cchHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy7091 145 HLILPIKNALSTRNPEVICETLKVLQHL 172 (205)
Q Consensus 145 qLI~PiK~AL~Trd~~V~~~~L~~Lq~L 172 (205)
..+..|..+|+..|+.|-..++.+|-.+
T Consensus 107 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 134 (201)
T 3ltj_A 107 RAVEPLIKALKDEDWFVRIAAAFALGEI 134 (201)
T ss_dssp GGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 4555566666667777766666666554
No 54
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=32.31 E-value=19 Score=36.19 Aligned_cols=98 Identities=13% Similarity=0.208 Sum_probs=64.3
Q ss_pred CCchhhhhcccccccchh----HhHHHhHHHHHHHcCCC--ceecccccchHHHHHhhcC------------CCHHHHHH
Q psy7091 103 QYYLPIFFDGLRETEYPY----KFFASKGIHDLLENGKD--KIVPVLPHLILPIKNALST------------RNPEVICE 164 (205)
Q Consensus 103 ~~yLPiFfdGLrEt~hPY----~FlA~~G~~dLL~~~~~--KIlPvlPqLI~PiK~AL~T------------rd~~V~~~ 164 (205)
.+|++-+++.+.+..+-+ ...+.+|+--++++.+. ..-..+.+|..|+-.+++. .|++.+..
T Consensus 584 ~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~ 663 (1023)
T 4hat_C 584 EPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKI 663 (1023)
T ss_dssp SCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHH
T ss_pred chhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHH
Confidence 467776666666643333 45566777777777552 3555777777777766654 34556666
Q ss_pred HHHHHHHHHhcCCccccchhhHHHhhhhh-hhHhhhc
Q psy7091 165 TLKVLQHLVTSSSMVGEALVPYYKQILPH-LNMYKDL 200 (205)
Q Consensus 165 ~L~~Lq~LV~~~~~VG~ALvPyyRqLLPv-lNlfk~~ 200 (205)
...+|+.++.....+|++..||...+.|. +|+|+.-
T Consensus 664 l~~il~~~~~v~~~lg~~f~~~~~~i~~~~l~~y~~~ 700 (1023)
T 4hat_C 664 IANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRAV 700 (1023)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777666678999999988877774 4566544
No 55
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=31.57 E-value=41 Score=25.44 Aligned_cols=70 Identities=14% Similarity=0.144 Sum_probs=45.6
Q ss_pred hhhhhcccccccchhHhHHHhHHHHHHHcCCCce-ecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q psy7091 106 LPIFFDGLRETEYPYKFFASKGIHDLLENGKDKI-VPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS 175 (205)
Q Consensus 106 LPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KI-lPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~ 175 (205)
+|.+++-|...+.--+.-|-..+..+.....+.. .-+-...|.+|-..|.+.|+++...++.+|..|+..
T Consensus 4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 74 (252)
T 4hxt_A 4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG 74 (252)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 4566666666554455566666666654432111 111124677777889999999999999999999754
No 56
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=30.15 E-value=54 Score=25.17 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=33.8
Q ss_pred hHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7091 126 KGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSS 176 (205)
Q Consensus 126 ~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~ 176 (205)
..+-|++....+ -| -..+..||+-|+++|+.+...||.+|-.+|+-+
T Consensus 27 leicD~I~~~~~--~~--k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNc 73 (140)
T 3ldz_A 27 LDICDKVGQSRT--GP--KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNC 73 (140)
T ss_dssp HHHHHHHTTSTT--HH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCc--CH--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhc
Confidence 345566644321 12 235778999999999999999999999988753
No 57
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=29.07 E-value=27 Score=33.33 Aligned_cols=55 Identities=11% Similarity=0.234 Sum_probs=43.0
Q ss_pred CceecccccchHHHHHhhcC--CCHHHHHHHHHHHHHHHhcCCccccchhhHHHhhhhhh
Q psy7091 137 DKIVPVLPHLILPIKNALST--RNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHL 194 (205)
Q Consensus 137 ~KIlPvlPqLI~PiK~AL~T--rd~~V~~~~L~~Lq~LV~~~~~VG~ALvPyyRqLLPvl 194 (205)
+-+.|++++++.-+...|+. .|.+|++.+..++..++. ..|+...||..++++.+
T Consensus 683 ~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~---~~~~~~~p~l~~~~~~l 739 (971)
T 2x1g_F 683 QPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAIT---NLRSSFQPMLQDLCLFI 739 (971)
T ss_dssp -CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH---HHHC--CTHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH---hhhhhccccHHHHHHHH
Confidence 46788888888888888865 478999999999999875 46888889988887765
No 58
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=27.83 E-value=44 Score=30.81 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=16.2
Q ss_pred ccchHHHHHhhcCCCHHHHHHHHHHHHHHH
Q psy7091 144 PHLILPIKNALSTRNPEVICETLKVLQHLV 173 (205)
Q Consensus 144 PqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV 173 (205)
+.++.+|+++|.++|+.|=.+|+.+|-+|.
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~ 170 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVI 170 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554444
No 59
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.13 E-value=59 Score=26.82 Aligned_cols=47 Identities=26% Similarity=0.396 Sum_probs=34.8
Q ss_pred HhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhc
Q psy7091 125 SKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTS 175 (205)
Q Consensus 125 ~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~ 175 (205)
...+-|++....+ -| -..+..||+-|+++|+.+...||.+|-.+|+-
T Consensus 29 ileicD~I~~~~~--~~--k~a~ral~krl~~~n~~v~l~aL~LLe~~vkN 75 (226)
T 3zyq_A 29 ILQICDLIRQGDT--QA--KYAVNSIKKKVNDKNPHVALYALEVMESVVKN 75 (226)
T ss_dssp HHHHHHHHHTTSS--CH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCc--cH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 3456677754321 11 24567899999999999999999999998874
No 60
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=26.10 E-value=67 Score=25.34 Aligned_cols=45 Identities=18% Similarity=0.241 Sum_probs=33.6
Q ss_pred HHHHHHHcCCCceecccc-cchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7091 127 GIHDLLENGKDKIVPVLP-HLILPIKNALSTRNPEVICETLKVLQHLVTSS 176 (205)
Q Consensus 127 G~~dLL~~~~~KIlPvlP-qLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~ 176 (205)
.+-|++....+ -| -.+..||+=|+++|+.|...||.+|-.+|+-+
T Consensus 38 eicD~I~~~~~-----~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNc 83 (163)
T 1x5b_A 38 DICDKVGSTPN-----GAKDCLKAIMKRVNHKVPHVALQALTLLGACVANC 83 (163)
T ss_dssp HHHHHHHHSSS-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCc-----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence 45566655321 22 34667899999999999999999999998753
No 61
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=25.67 E-value=70 Score=24.86 Aligned_cols=45 Identities=11% Similarity=0.171 Sum_probs=33.7
Q ss_pred HHHHHHHcCCCceecccc-cchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7091 127 GIHDLLENGKDKIVPVLP-HLILPIKNALSTRNPEVICETLKVLQHLVTSS 176 (205)
Q Consensus 127 G~~dLL~~~~~KIlPvlP-qLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~ 176 (205)
.+-|++..... -| -.+..||+=|+++|+.+...||.+|-.+|+-+
T Consensus 24 eicD~I~~~~~-----~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNC 69 (148)
T 1mhq_A 24 NFCEQVNTDPN-----GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHC 69 (148)
T ss_dssp HHHHHHHHSSH-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCc-----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc
Confidence 55666655321 12 24678999999999999999999999998753
No 62
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=24.27 E-value=39 Score=32.99 Aligned_cols=97 Identities=12% Similarity=0.179 Sum_probs=60.7
Q ss_pred CCchhhhhccccc----ccchhHhHHHhHHHHHHHcCC--CceecccccchHHHHHhhcC------------CCHHHHHH
Q psy7091 103 QYYLPIFFDGLRE----TEYPYKFFASKGIHDLLENGK--DKIVPVLPHLILPIKNALST------------RNPEVICE 164 (205)
Q Consensus 103 ~~yLPiFfdGLrE----t~hPY~FlA~~G~~dLL~~~~--~KIlPvlPqLI~PiK~AL~T------------rd~~V~~~ 164 (205)
.+|++-+++.|.+ .+.--.....+++--++...+ ++..+.+.+|+.|+-.+++. .|++....
T Consensus 584 ~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 663 (1049)
T 3m1i_C 584 EPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKI 663 (1049)
T ss_dssp SCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGSHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhcCHHHHHH
Confidence 4677766655432 222223456788888888765 57889999999997665542 24554444
Q ss_pred HHHHHHHHHhcCCccccchhhHHHhhhh-hhhHhhh
Q psy7091 165 TLKVLQHLVTSSSMVGEALVPYYKQILP-HLNMYKD 199 (205)
Q Consensus 165 ~L~~Lq~LV~~~~~VG~ALvPyyRqLLP-vlNlfk~ 199 (205)
...+|+.+......+|+.+.|+.-.+++ .+++|+.
T Consensus 664 l~~~l~~~~~~~~~l~~~f~p~~~~i~~~~l~~~~~ 699 (1049)
T 3m1i_C 664 IANIIKTNVAVCTSMGADFYPQLGHIYYNMLQLYRA 699 (1049)
T ss_dssp HHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455555655567788888887765543 3445543
No 63
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=24.10 E-value=78 Score=24.77 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=27.4
Q ss_pred chHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7091 146 LILPIKNALSTRNPEVICETLKVLQHLVTSS 176 (205)
Q Consensus 146 LI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~ 176 (205)
.+..||+-|+++|+.+...||.+|-.+|+-+
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNC 79 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSC 79 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc
Confidence 4778999999999999999999999988743
No 64
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=24.07 E-value=1.4e+02 Score=23.45 Aligned_cols=28 Identities=18% Similarity=-0.020 Sum_probs=20.2
Q ss_pred cchHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy7091 145 HLILPIKNALSTRNPEVICETLKVLQHL 172 (205)
Q Consensus 145 qLI~PiK~AL~Trd~~V~~~~L~~Lq~L 172 (205)
..+.+|..+|...|++|-..++.+|..+
T Consensus 159 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 159 ATIPLLINLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp CCHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhh
Confidence 4566677777777888777777777655
No 65
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=23.85 E-value=74 Score=23.97 Aligned_cols=73 Identities=12% Similarity=0.150 Sum_probs=46.9
Q ss_pred CchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecc-cccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7091 104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPV-LPHLILPIKNALSTRNPEVICETLKVLQHLVTSS 176 (205)
Q Consensus 104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPv-lPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~ 176 (205)
..+|.+.+-|...+..-+.-|-..+..|.....+..-.+ =..+|..|-..|.+.|+++-..++.+|..|....
T Consensus 170 ~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~ 243 (252)
T 4hxt_A 170 GGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243 (252)
T ss_dssp THHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence 367777777776555555555555555543211111111 1346777888899999999999999999997543
No 66
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=23.00 E-value=1.2e+02 Score=23.77 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=41.6
Q ss_pred CchhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy7091 104 YYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHL 172 (205)
Q Consensus 104 ~yLPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~L 172 (205)
..+|.+.+.|.+.+..-+.-|..++..+ +. --+..+.++...|+..|++|-..++.+|..+
T Consensus 159 ~~~~~L~~~l~d~~~~vr~~a~~aL~~~---~~-----~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~ 219 (280)
T 1oyz_A 159 ATIPLLINLLKDPNGDVRNWAAFAININ---KY-----DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR 219 (280)
T ss_dssp CCHHHHHHHHTCSSHHHHHHHHHHHHHH---TC-----CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhh---cc-----CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence 4678888877765555555555555443 21 1256677888889889999988888887554
No 67
>3ktb_A Arsenical resistance operon trans-acting represso; alpha-beta-alpha sandwich, helix-turn-helix, structural GENO PSI-2; 2.10A {Bacteroides vulgatus}
Probab=22.15 E-value=39 Score=25.72 Aligned_cols=29 Identities=17% Similarity=0.416 Sum_probs=25.9
Q ss_pred cccchhHhHHHhHHHHHHHcCCCceeccc
Q psy7091 115 ETEYPYKFFASKGIHDLLENGKDKIVPVL 143 (205)
Q Consensus 115 Et~hPY~FlA~~G~~dLL~~~~~KIlPvl 143 (205)
-+.+|-.|+.-..+.++|+..|...||++
T Consensus 51 L~~~P~~F~~N~~V~~~L~~~G~~~LP~~ 79 (106)
T 3ktb_A 51 LRDEPQVYVSNKTVNDFLQKHGADALPIT 79 (106)
T ss_dssp TTTCTTHHHHSHHHHHHHHTTCGGGCSEE
T ss_pred cccChHHHhcCHHHHHHHHHcCcccCCEE
Confidence 47899999999999999999888888875
No 68
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=21.91 E-value=67 Score=22.82 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=38.0
Q ss_pred hhhhhcccccccchhHhHHHhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy7091 106 LPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHL 172 (205)
Q Consensus 106 LPiFfdGLrEt~hPY~FlA~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~L 172 (205)
++.+.+.|.+.+ | .+ +...-..|..-++ +..+.+|..+|+..|+.|-..+..+|..+
T Consensus 44 ~~~L~~~L~d~~-~--~v-R~~A~~aL~~~~~------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~ 100 (131)
T 1te4_A 44 FEPLLESLSNED-W--RI-RGAAAWIIGNFQD------ERAVEPLIKLLEDDSGFVRSGAARSLEQI 100 (131)
T ss_dssp HHHHHHGGGCSC-H--HH-HHHHHHHHGGGCS------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCC-H--HH-HHHHHHHHHhcCC------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 578888887533 3 22 3333333433222 45688888999999999999999998766
No 69
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=21.79 E-value=90 Score=24.82 Aligned_cols=46 Identities=13% Similarity=0.203 Sum_probs=35.2
Q ss_pred hHHHHHHHcCCCceeccccc-chHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7091 126 KGIHDLLENGKDKIVPVLPH-LILPIKNALSTRNPEVICETLKVLQHLVTSS 176 (205)
Q Consensus 126 ~G~~dLL~~~~~KIlPvlPq-LI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~ 176 (205)
..+-|++....+ -|+ .+..||+=|+++|+.|...||.+|-.+|+-+
T Consensus 35 leicD~I~~~~~-----~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNC 81 (171)
T 1juq_A 35 IGFCDQINKELE-----GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNC 81 (171)
T ss_dssp HHHHHHHHHSTT-----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCc-----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHc
Confidence 356666655432 233 4678999999999999999999999998753
No 70
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=20.58 E-value=1.6e+02 Score=23.84 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=28.5
Q ss_pred ccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcCC
Q psy7091 144 PHLILPIKNALSTRNPEVICETLKVLQHLVTSSS 177 (205)
Q Consensus 144 PqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~~ 177 (205)
|+.|..|=.+|+++++.+...++++|-.++..++
T Consensus 95 ~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~ 128 (233)
T 2f31_A 95 EEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQ 128 (233)
T ss_dssp SSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSS
T ss_pred cHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCC
Confidence 5667788889999999999999999988776554
No 71
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=20.50 E-value=65 Score=28.64 Aligned_cols=30 Identities=27% Similarity=0.299 Sum_probs=15.7
Q ss_pred cccchHHHHHhhcCCCHHHHHHHHHHHHHH
Q psy7091 143 LPHLILPIKNALSTRNPEVICETLKVLQHL 172 (205)
Q Consensus 143 lPqLI~PiK~AL~Trd~~V~~~~L~~Lq~L 172 (205)
++.+..++|++|..+||-|-.+|+=..-+|
T Consensus 137 ~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL 166 (355)
T 3tjz_B 137 LQAIERYMKQAIVDKVPSVSSSALVSSLHL 166 (355)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 445555555555555555555554444444
No 72
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=20.10 E-value=99 Score=25.05 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=36.4
Q ss_pred HhHHHHHHHcCCCceecccccchHHHHHhhcCCCHHHHHHHHHHHHHHHhcC
Q psy7091 125 SKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSS 176 (205)
Q Consensus 125 ~~G~~dLL~~~~~KIlPvlPqLI~PiK~AL~Trd~~V~~~~L~~Lq~LV~~~ 176 (205)
...+-|++....+ - --..+..||+=|+++|+.+...||.+|-.+|+-.
T Consensus 26 ~leicd~i~~~~~--~--~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNc 73 (220)
T 1dvp_A 26 ILLICDEINQKDV--T--PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNC 73 (220)
T ss_dssp HHHHHHHHHTTSS--C--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhhcCCCc--C--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc
Confidence 3457788865433 1 1245678899999999999999999999998764
Done!