RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7091
(205 letters)
>gnl|CDD|220670 pfam10274, ParcG, Parkin co-regulated protein. This family of
proteins is transcribed anti-sense along the DNA to the
Parkin gene product and the two appear to be transcribed
under the same promoter. The protein has predicted
alpha-helical and beta-sheet domains which suggest its
function is in the ubiquitin/proteasome system.
Mutations in parkin are the genetic cause of early-onset
and autosomal recessive juvenile parkinsonism.
Length = 183
Score = 209 bits (535), Expect = 2e-69
Identities = 81/136 (59%), Positives = 100/136 (73%), Gaps = 1/136 (0%)
Query: 67 SMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASK 126
+ FR Y RGD P + S NKI WK D + L+Y YLP FFDGLRET++PY+F A
Sbjct: 1 TSFRYVYDRGDIPCRINHGSGKNKIQWKVDPEQLDYDPYLPTFFDGLRETKHPYRFVARN 60
Query: 127 GIHDLLEN-GKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVP 185
GI DLLE G +KI+PVLP LILP+K AL+TR+PEV C LKVLQ LV SS ++GEALVP
Sbjct: 61 GIIDLLEAGGGEKILPVLPQLILPLKAALNTRDPEVFCVALKVLQQLVKSSPLIGEALVP 120
Query: 186 YYKQILPHLNMYKDLN 201
YY+Q+LP LN++K+ N
Sbjct: 121 YYRQLLPVLNLFKNKN 136
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 28.4 bits (64), Expect = 0.82
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 120 YKFFASKGIHDLLENGKDKIVPVLP 144
KF K I +L+ NG K+
Sbjct: 27 VKFLEGKNIKELIANGSAKLSAAAA 51
>gnl|CDD|214825 smart00802, UME, Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.
Characteristic domain in UVSP PI-3 kinase, MEI-41 and
ESR-1. Found in nucleolar proteins. Associated with FAT,
FATC, PI3_PI4_kinase modules.
Length = 107
Score = 27.9 bits (63), Expect = 1.6
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 115 ETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVT 174
+ Y K A + I L++ I LP ++ +++AL PE+ L+ L+
Sbjct: 26 KKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSAL--EIPELRSLALRCWHVLIK 83
Query: 175 S 175
+
Sbjct: 84 T 84
>gnl|CDD|191935 pfam08064, UME, UME (NUC010) domain. This domain is characteristic
of UVSB PI-3 kinase, MEI-41 and ESR1.
Length = 107
Score = 27.5 bits (62), Expect = 2.0
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 111 DGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQ 170
D K A + I +L++ G I P ++ +++AL PE+ E L+
Sbjct: 22 DSKGRKPIFEKKRALRSIEELIKLGGKHISSARPQIMACLQSAL--EIPELRSEALRCWH 79
Query: 171 HLVTS 175
+ S
Sbjct: 80 VFIKS 84
>gnl|CDD|236811 PRK10987, PRK10987, regulatory protein AmpE; Provisional.
Length = 284
Score = 27.2 bits (61), Expect = 6.2
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 7/27 (25%)
Query: 85 KSVGNKISWKEDIKTLNYQYYL-PIFF 110
+ + + W +NY+YYL P+F+
Sbjct: 130 RELQQALLW------INYRYYLAPLFW 150
>gnl|CDD|212594 cd11720, FANCI, Fanconi anemia I protein. The Fanconi anemia ID
complex consists of two subunits, Fanconi anemia I and
Fanconi anemia D2 (FANCI-FANCD2) and plays a central
role in the repair of DNA interstrand cross-links
(ICLs). The complex is activated via DNA damage-induced
phosphorylation by ATR (ataxia telangiectasia and
Rad3-related) and monoubiquitination by the FA core
complex ubiquitin ligase, and it binds to DNA at the ICL
site, recognizing branched DNA structures. Defects in
the complex cause Fanconi anemia, a cancer
predisposition syndrome. The phosphorylation of FANCI
may function as a molecular switch to turn on the FA
pathway.
Length = 1202
Score = 27.3 bits (61), Expect = 7.5
Identities = 16/86 (18%), Positives = 27/86 (31%), Gaps = 8/86 (9%)
Query: 116 TEYPYKF------FASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVL 169
YP K + +++ + H I + LST E K +
Sbjct: 838 QLYPSKLEDFLSVIDVEDGGGEKSTIDEQLHFQIRHFIRSLMKLLSTEEEEDFVS--KEV 895
Query: 170 QHLVTSSSMVGEALVPYYKQILPHLN 195
L+ S++ + L P Q L
Sbjct: 896 VILIEILSVLSDKLPPNSTQAKQMLT 921
>gnl|CDD|215619 PLN03185, PLN03185, phosphatidylinositol phosphate kinase;
Provisional.
Length = 765
Score = 27.1 bits (60), Expect = 8.2
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 100 LNYQYYL-PIFFDG-LRETEYPYKFFASKGIHD 130
LNY +YL P + D LR+ E KF ++ I D
Sbjct: 554 LNYSFYLEPSWRDALLRQIEIDSKFLEAQRIMD 586
>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region. This family
consists of the N terminal region of various alpha, beta
and gamma subunits of the AP-1, AP-2 and AP-3 adaptor
protein complexes. The adaptor protein (AP) complexes
are involved in the formation of clathrin-coated pits
and vesicles. The N-terminal region of the various
adaptor proteins (APs) is constant by comparison to the
C-terminal which is variable within members of the AP-2
family; and it has been proposed that this constant
region interacts with another uniform component of the
coated vesicles.
Length = 522
Score = 26.8 bits (60), Expect = 9.3
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 138 KIVPVLPHLILP-----IKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILP 192
K+ P L+ +K LS ++P V+ + +L + + + L+P + L
Sbjct: 139 KLYRKDPDLVRDFLVPELKELLSDKDPGVVSAAVALLYEIRKNDRLYLNKLLPLLVRRL- 197
Query: 193 HLNMYKDLNN 202
N+ N
Sbjct: 198 -CNLLTVCNP 206
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.418
Gapped
Lambda K H
0.267 0.0785 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,542,721
Number of extensions: 969488
Number of successful extensions: 793
Number of sequences better than 10.0: 1
Number of HSP's gapped: 792
Number of HSP's successfully gapped: 12
Length of query: 205
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 113
Effective length of database: 6,857,034
Effective search space: 774844842
Effective search space used: 774844842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.6 bits)