RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7091
(205 letters)
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein,
phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP:
a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A*
3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A
3c5w_A
Length = 588
Score = 36.1 bits (83), Expect = 0.006
Identities = 28/179 (15%), Positives = 54/179 (30%), Gaps = 15/179 (8%)
Query: 29 PSLPVRVVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVG 88
S VR + A P+ D + ++ + + + + K
Sbjct: 254 KSWRVRYMVADKFT----ELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC 309
Query: 89 NKISWKEDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLEN-GKDKIVPVLPHLI 147
+S + + + LP + + + K + I L GKD + HL+
Sbjct: 310 ENLS-ADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLL 365
Query: 148 LPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMY-KDLNNRYR 205
L PEV + L + + + +LP + +D R R
Sbjct: 366 PLFLAQLKDECPEVRLNIISNLDCVNEVIGI-----RQLSQSLLPAIVELAEDAKWRVR 419
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.6 bits (81), Expect = 0.010
Identities = 25/144 (17%), Positives = 46/144 (31%), Gaps = 11/144 (7%)
Query: 22 DLQYGRRPSLPVRVVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIA 81
+ QY + L V AF K+ PK + + D+ M + S
Sbjct: 13 EHQYQYKDILSV-FEDAFVDNFDCKDVQDM--PKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 82 MEFKSVGNKISWK--EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKI 139
S ++ K E++ +NY++ + R+ + + + D L N
Sbjct: 70 T-LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ--RDRLYNDNQVF 126
Query: 140 VP---VLPHLILPIKNALSTRNPE 160
L ++ AL P
Sbjct: 127 AKYNVSRLQPYLKLRQALLELRPA 150
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 35.5 bits (80), Expect = 0.011
Identities = 10/94 (10%), Positives = 29/94 (30%), Gaps = 7/94 (7%)
Query: 102 YQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVP-VLPHLILPIKNALSTRNPE 160
+ L L + + L+ + + + ++ HL+ + S
Sbjct: 173 HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTR 232
Query: 161 VICETLKVLQHLVTSSSMVGEALVPYYKQILPHL 194
+ + + G + Y ++I+P +
Sbjct: 233 TYIQCIAAISR------QAGHRIGEYLEKIIPLV 260
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.4 bits (81), Expect = 0.013
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 11/94 (11%)
Query: 92 SWKEDIKTLNYQYYLPIFFDGLRETE-YPYKFFASKGIHDLLENGKDKIVPVLPHLILPI 150
SW E + +FF G+R E YP + D LEN + +P +L I
Sbjct: 288 SW-ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG-----VPSPMLSI 341
Query: 151 KNALSTRNPEVICETLKVLQHLVTSSSMVGEALV 184
N L+ +V K HL V +LV
Sbjct: 342 SN-LTQ--EQVQDYVNKTNSHLPAGKQ-VEISLV 371
Score = 30.0 bits (67), Expect = 0.58
Identities = 28/163 (17%), Positives = 45/163 (27%), Gaps = 61/163 (37%)
Query: 1 M---VYATESKHKKNGEIVCHRARDL----QYGRRPSLPVRVVPAFSLQTHQKNTITGAP 53
M +Y T + V +RA D YG FS+ N
Sbjct: 1631 MGMDLYKTSKAAQD----VWNRA-DNHFKDTYG------------FSILDIVINN----- 1668
Query: 54 PKCVPKDKTY------------DYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLN 101
P + T +Y++M G FK + + + +
Sbjct: 1669 ----PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI--------NEHSTS 1716
Query: 102 YQYYLPIFFDGLRETEY--PYKFFASKGI-HDLLENGKDKIVP 141
Y + L T++ P K DL G ++P
Sbjct: 1717 YTFRSEK--GLLSATQFTQPALTLMEKAAFEDLKSKG---LIP 1754
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein
transport importin, transportin, transport protein;
2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A
2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Length = 852
Score = 34.8 bits (79), Expect = 0.017
Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 1/102 (0%)
Query: 95 EDIKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNAL 154
+ + + ++ + A L E ++VP L +++ + A
Sbjct: 433 SQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAF 492
Query: 155 STRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNM 196
S + + + L S Y + ++P L
Sbjct: 493 SKYQHKNLLILYDAIGTLADSVGHHLNK-PEYIQMLMPPLIQ 533
Score = 30.5 bits (68), Expect = 0.35
Identities = 14/94 (14%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 101 NYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPE 160
+ ++ F + E + + + LLE D+++P + +++ + ++
Sbjct: 212 HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDEN 271
Query: 161 VICETLKVLQHLVTSSSMVGEALVPYYKQILPHL 194
V E + L + + LV + +++P L
Sbjct: 272 VALEACEFWLTLA-EQPICKDVLVRHLPKLIPVL 304
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat,
microtubule plus END, +TIP, protein binding; 1.70A
{Saccharomyces cerevisiae}
Length = 249
Score = 30.0 bits (67), Expect = 0.37
Identities = 8/91 (8%), Positives = 25/91 (27%), Gaps = 2/91 (2%)
Query: 106 LPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILP-IKNALSTRNPEVICE 164
D +E + K + + + +L I + + P++ E
Sbjct: 106 FTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRME 165
Query: 165 TLKVLQH-LVTSSSMVGEALVPYYKQILPHL 194
++ + +++P +
Sbjct: 166 CTQLFNASMKEEKDGYSTLQRYLKDEVVPIV 196
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; methionine, synthase,
methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis
thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A
1u22_A*
Length = 765
Score = 29.4 bits (66), Expect = 0.83
Identities = 19/95 (20%), Positives = 42/95 (44%), Gaps = 14/95 (14%)
Query: 101 NYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPE 160
NY Y +P E + + + K +++ E K V +P L+ P+ L ++ +
Sbjct: 116 NYHYIVPEL-----GPEVNFSYASHKAVNEYKE-AKALGVDTVPVLVGPVSYLLLSKAAK 169
Query: 161 VICETLKVLQHLVTSSSMVGEALVPYYKQILPHLN 195
+ ++ ++L L ++P YK+++ L
Sbjct: 170 GVDKSFELLSLL--------PKILPIYKEVITELK 196
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative
splicing, endocytosis, lipid-binding, golgi apparatus,
adaptor, membrane, transport; HET: IHP; 2.59A {Homo
sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B
1w63_B
Length = 591
Score = 27.8 bits (62), Expect = 3.2
Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 2/48 (4%)
Query: 150 IKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMY 197
NP + ++ + + + E L ++ L + Y
Sbjct: 91 FVKDCEDPNPLIRALAVRTMGCIR--VDKITEYLCEPLRKCLKDEDPY 136
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic
transport, nuclear trafficking, importin- beta, complex;
1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB:
2bku_B 3ea5_B* 3nd2_A
Length = 861
Score = 27.1 bits (59), Expect = 4.6
Identities = 9/77 (11%), Positives = 20/77 (25%), Gaps = 9/77 (11%)
Query: 124 ASKGIHDLLEN-GKDKIVPVLPHLILPIKNALSTRN-----PEVICETLKVLQHLVTSSS 177
S I +L+E + P+ + + N L +V +
Sbjct: 473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA- 531
Query: 178 MVGEALVPYYKQILPHL 194
+ + I +
Sbjct: 532 --TDTVAETSASISTFV 546
>2d48_A Interleukin-4; four helix bundle, cytokine; 1.65A {Homo sapiens}
PDB: 1itl_A 1itm_A 2b90_A 1cyl_A 1hik_A 1iar_A 1rcb_A
2b8u_A 2cyk_A 2int_A 3bpl_A* 3bpn_A* 2b8y_A 1hij_A
1hzi_A 2b8z_A 1bbn_A 1bcn_A 1iti_A 2b8x_A ...
Length = 129
Score = 26.5 bits (57), Expect = 4.7
Identities = 15/80 (18%), Positives = 24/80 (30%), Gaps = 3/80 (3%)
Query: 126 KGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVP 185
K ++ L E + + KN T E C VL+ + L
Sbjct: 12 KDLNSLTEQKTLCTELTVTDIFAASKN---TTEKETFCRAATVLRQFYSHHEKDTRCLGA 68
Query: 186 YYKQILPHLNMYKDLNNRYR 205
+Q H + + L R
Sbjct: 69 TAQQFHRHKQLIRFLKRLDR 88
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis,
clathrin adaptor, transport, coated PITS; 4.0A {Mus
musculus} SCOP: i.23.1.1
Length = 618
Score = 26.8 bits (59), Expect = 6.0
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 150 IKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMY 197
IKN L+ V L L + SS M L +++L N Y
Sbjct: 112 IKNDLNHSTQFVQGLALCTLGCMG-SSEMC-RDLAGEVEKLLKTSNSY 157
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; TIM barrel, methyltetrahydrofolate,
zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A
1xdj_A 1xr2_A* 1xpg_A*
Length = 766
Score = 26.3 bits (58), Expect = 9.4
Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 16/96 (16%)
Query: 101 NYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIK-NALSTRNP 159
NY Y +P + +K + D L K K + P +I P LS RN
Sbjct: 141 NYHYLVPEI------ETEEFYLLENKPLEDYLF-FKSKGIETAPWVIGPFTFLYLSKRNG 193
Query: 160 EVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLN 195
E I ++ + L E+LV YK++ L
Sbjct: 194 EWIRRPNQMEKLL--------ESLVSVYKEVFEKLV 221
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.418
Gapped
Lambda K H
0.267 0.0494 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,159,348
Number of extensions: 177931
Number of successful extensions: 321
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 16
Length of query: 205
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 116
Effective length of database: 4,216,824
Effective search space: 489151584
Effective search space used: 489151584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.5 bits)