RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7091
         (205 letters)



>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1
            (Tip120) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 1207

 Score = 47.0 bits (110), Expect = 6e-07
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 3/98 (3%)

Query: 97   IKTLNYQYYLPIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALST 156
            +  ++ +  LP     L       +      +   + +    I P+L + I      L  
Sbjct: 955  LTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLED 1014

Query: 157  RNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHL 194
             +  V    L        +       +      +LPHL
Sbjct: 1015 PDLNVRRVALVTFNSAAHN---KPSLIRDLLDTVLPHL 1049



 Score = 25.9 bits (55), Expect = 5.0
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 125 SKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALV 184
            K    L ++ + K+V ++      +K  L  +N EV    +K L  LV   S V E  V
Sbjct: 32  QKDSIKLDDDSERKVVKMI------LK-LLEDKNGEVQNLAVKCLGPLV---SKVKEYQV 81

Query: 185 PYYKQIL 191
                 L
Sbjct: 82  ETIVDTL 88


>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 861

 Score = 42.1 bits (97), Expect = 2e-05
 Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 107 PIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRN--PEVICE 164
           P     L + + P    A   I D+  + ++        ++  +   +S  N   E+   
Sbjct: 642 PYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMMNVLAQMISNPNARRELKPA 701

Query: 165 TLKVLQHLVTSSSMVGEALVPYYKQILPHL 194
            L V   + ++   +G   +PY   I+   
Sbjct: 702 VLSVFGDIASN---IGADFIPYLNDIMALC 728


>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 888

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 15/156 (9%), Positives = 46/156 (29%), Gaps = 5/156 (3%)

Query: 47  NTITGAPPKCVPKDKTYDYTSMFRTYYSRGDFPIAMEFKSVGNKISWKEDIKTLNYQYYL 106
                   K + +    +          +    +A++  S   +       + +     L
Sbjct: 608 QRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNIL 667

Query: 107 PIFFDGLRETEYPYKFFASKGIHDLLENGKDKIVPVLPHLILPIKNALSTRNPEVICETL 166
            + +  +++     +  +   + DL +     + P +   +  +   L+     V     
Sbjct: 668 TLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNAT 727

Query: 167 KVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNN 202
             +  +      +G  + PY   +L  L   + +N 
Sbjct: 728 WAIGEISIQ---MGIEMQPYIPMVLHQL--VEIINR 758


>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 959

 Score = 30.3 bits (67), Expect = 0.17
 Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 13/107 (12%)

Query: 101 NYQYYLPIFFDGLRETEYPYKFFASKGIHDLLEN-----------GKDKIVPVLPHLILP 149
                +PI    L+  EY    +A+  I  +L              K+ I      L+  
Sbjct: 493 QLIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKN 552

Query: 150 IKNALSTRNPEV--ICETLKVLQHLVTSSSMVGEALVPYYKQILPHL 194
           +   +         + E   +++ +        +++ P + Q+L   
Sbjct: 553 LIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQF 599


>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 579

 Score = 29.7 bits (66), Expect = 0.27
 Identities = 6/48 (12%), Positives = 15/48 (31%), Gaps = 2/48 (4%)

Query: 150 IKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMY 197
                   NP +    ++ +  +      + E L    ++ L   + Y
Sbjct: 88  FVKDCEDPNPLIRALAVRTMGCIRVDK--ITEYLCEPLRKCLKDEDPY 133


>d1m0wa1 c.30.1.4 (A:216-323) Eukaryotic glutathione synthetase,
          substrate-binding domain {Baker's yeast (Saccharomyces
          cerevisiae) [TaxId: 4932]}
          Length = 108

 Score = 27.4 bits (61), Expect = 0.51
 Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 1/60 (1%)

Query: 21 RDLQYGRRPSLPVRVVPAFSLQTHQKNTITGAPPKCVPKDKTYDYTSM-FRTYYSRGDFP 79
          + L+         + V       + K  I     K   +D   +   + +RT Y+  D+ 
Sbjct: 20 KVLELNLLEKFGTKSVRLTFDDVNDKLFIDDKTGKLFIRDTEQEIAVVYYRTGYTTTDYT 79


>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 457

 Score = 26.3 bits (56), Expect = 2.7
 Identities = 5/42 (11%), Positives = 14/42 (33%), Gaps = 4/42 (9%)

Query: 143 LPHLILPIKNALSTRNPEVICETLKVLQHLVTSSSMVGEALV 184
           +P  +      LS+++ +        +QH         + + 
Sbjct: 4   IPKAV----QYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVY 41


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 24.7 bits (53), Expect = 9.4
 Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 150 IKNALSTRNPEVICETLKVLQHLVTSSSMVGEALVPYYKQILPHLNMYKDLNNRYR 205
           IKN L++RNP  +   L  + ++ +        +   +   +P + +  D  +  +
Sbjct: 108 IKNDLASRNPTFMGLALHCIANVGSRE------MAEAFAGEIPKILVAGDTMDSVK 157


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.418 

Gapped
Lambda     K      H
   0.267   0.0500    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 788,920
Number of extensions: 36564
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 10
Length of query: 205
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 124
Effective length of database: 1,295,466
Effective search space: 160637784
Effective search space used: 160637784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)