BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7092
(540 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CRW|A Chain A, Solution Structure Of The Arfgap Domain Of
Adp-Ribosylation Factor Gtpaseactivating Protein 3
(Arfgap 3)
Length = 149
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/158 (48%), Positives = 94/158 (59%), Gaps = 46/158 (29%)
Query: 42 CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 101
CFDC AKNP+W+S+TYGVF+CIDCS HR LGVHLSF+RST+LD+NW+W QLR MQ+GGN
Sbjct: 32 CFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGN 91
Query: 102 ANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTS 161
A+A SFF+QH C++
Sbjct: 92 ASAS----------------------------------------------SFFHQHGCST 105
Query: 162 KDAQQKYNSRAAQLYREKLQHAAVQAMKIHGTKLFLDA 199
D KYNSRAAQLYREK++ A QA + HGT L+LD+
Sbjct: 106 NDTNAKYNSRAAQLYREKIKSLASQATRKHGTDLWLDS 143
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/36 (75%), Positives = 33/36 (91%)
Query: 354 HRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANA 389
HR LGVHLSF+RST+LD+NW+W QLR MQ+GGNA+A
Sbjct: 59 HRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASA 94
>pdb|2P57|A Chain A, Gap Domain Of Znf289, An Id1-Regulated Zinc Finger Protein
Length = 144
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/153 (47%), Positives = 87/153 (56%), Gaps = 46/153 (30%)
Query: 40 QECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLG 99
+ CFDC AKNP+W+S+TYGVF+CIDCS VHR LGVHLSF+RST+LD+NW W QLR MQ+G
Sbjct: 38 KACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVG 97
Query: 100 GNANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNC 159
GNANA +FF QH C
Sbjct: 98 GNANA----------------------------------------------TAFFRQHGC 111
Query: 160 TSKDAQQKYNSRAAQLYREKLQHAAVQAMKIHG 192
T+ DA KYNSRAAQ+YREK++ A+ HG
Sbjct: 112 TANDANTKYNSRAAQMYREKIRQLGSAALARHG 144
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 33/38 (86%)
Query: 352 AVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANA 389
VHR LGVHLSF+RST+LD+NW W QLR MQ+GGNANA
Sbjct: 65 GVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANA 102
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 53/139 (38%), Positives = 70/139 (50%), Gaps = 45/139 (32%)
Query: 42 CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 101
CF+C A NP W SVTYG++IC++CS HRGLGVHLSFVRS +D W ++L +M+ GGN
Sbjct: 40 CFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD-KWKDIELEKMKAGGN 98
Query: 102 ANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTS 161
A F++ L S + C S
Sbjct: 99 AK----------------------FREF--------------------LESQEDYDPCWS 116
Query: 162 KDAQQKYNSRAAQLYREKL 180
Q+KYNSRAA L+R+K+
Sbjct: 117 --LQEKYNSRAAALFRDKV 133
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 354 HRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPFNAGQFDSPP 406
HRGLGVHLSFVRS +D W ++L +M+ GGN A+F F Q D P
Sbjct: 67 HRGLGVHLSFVRSVTMD-KWKDIELEKMKAGGN-----AKFREFLESQEDYDP 113
>pdb|3DWD|A Chain A, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
pdb|3DWD|B Chain B, Crystal Structure Of The Arfgap Domain Of Human Arfgap1
Length = 147
Score = 89.4 bits (220), Expect = 5e-18, Method: Composition-based stats.
Identities = 53/139 (38%), Positives = 70/139 (50%), Gaps = 45/139 (32%)
Query: 42 CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 101
CF+C A NP W SVTYG++IC++CS HRGLGVHLSFVRS +D W ++L +M+ GGN
Sbjct: 41 CFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMD-KWKDIELEKMKAGGN 99
Query: 102 ANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTS 161
A F++ L S + C S
Sbjct: 100 AK----------------------FREF--------------------LESQEDYDPCWS 117
Query: 162 KDAQQKYNSRAAQLYREKL 180
Q+KYNSRAA L+R+K+
Sbjct: 118 --LQEKYNSRAAALFRDKV 134
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/53 (49%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 354 HRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPFNAGQFDSPP 406
HRGLGVHLSFVRS +D W ++L +M+ GGN A+F F Q D P
Sbjct: 68 HRGLGVHLSFVRSVTMD-KWKDIELEKMKAGGN-----AKFREFLESQEDYDP 114
>pdb|2OWA|A Chain A, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
pdb|2OWA|B Chain B, Crystal Structure Of Putative Gtpase Activating Protein
For Adp Ribosylation Factor From Cryptosporidium Parvum
(Cgd5_1040)
Length = 138
Score = 87.8 bits (216), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/77 (50%), Positives = 56/77 (72%), Gaps = 3/77 (3%)
Query: 32 LQIITFFPQE--CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWT 89
QI+ P+ CFDC ++NPTW S+++ VFIC++CS+ HR +GVH+SFVRS+ LD +T
Sbjct: 27 FQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLD-KFT 85
Query: 90 WVQLRQMQLGGNANAPN 106
+QL +M +GGN A N
Sbjct: 86 PIQLVRMDIGGNGRARN 102
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/36 (55%), Positives = 27/36 (75%), Gaps = 1/36 (2%)
Query: 354 HRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANA 389
HR +GVH+SFVRS+ LD +T +QL +M +GGN A
Sbjct: 66 HRKMGVHISFVRSSDLD-KFTPIQLVRMDIGGNGRA 100
>pdb|3SUB|A Chain A, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
pdb|3SUB|B Chain B, Crystal Structure Of The Catalytic Domain Of Plasmodium
Falciparum Arf Gtpase Activating Protein
Length = 163
Score = 77.8 bits (190), Expect = 1e-14, Method: Composition-based stats.
Identities = 33/61 (54%), Positives = 44/61 (72%), Gaps = 1/61 (1%)
Query: 41 ECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGG 100
+CFDC NP W SV +G+F+CI+CS VHR LGVH+S VRS ++D +T QL+ + GG
Sbjct: 24 KCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDI-FTDEQLKYIDKGG 82
Query: 101 N 101
N
Sbjct: 83 N 83
Score = 36.2 bits (82), Expect = 0.047, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 352 AVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 386
VHR LGVH+S VRS ++D +T QL+ + GGN
Sbjct: 50 GVHRSLGVHISIVRSIKMDI-FTDEQLKYIDKGGN 83
>pdb|2CRR|A Chain A, Solution Structure Of Arfgap Domain From Human Smap1
Length = 141
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 42 CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 101
C DC AK P W+S GVFICI C+ +HR LGVH+S V+S LD WT Q++ MQ GN
Sbjct: 32 CADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD-QWTAEQIQCMQDMGN 90
Query: 102 ANA 104
A
Sbjct: 91 TKA 93
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 352 AVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANA 389
+HR LGVH+S V+S LD WT Q++ MQ GN A
Sbjct: 57 GIHRNLGVHISRVKSVNLD-QWTAEQIQCMQDMGNTKA 93
>pdb|2IQJ|A Chain A, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
pdb|2IQJ|B Chain B, Crystal Structure Of The Gap Domain Of Smap1l (Loc64744)
Stromal Membrane-Associated Protein 1-Like
Length = 134
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 33/63 (52%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 42 CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 101
C DC +K P W+S GVFICI C+ +HR LGVH+S V+S LD WT Q++ MQ GN
Sbjct: 30 CADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLD-QWTQEQIQCMQEMGN 88
Query: 102 ANA 104
A
Sbjct: 89 GKA 91
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 352 AVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANA 389
+HR LGVH+S V+S LD WT Q++ MQ GN A
Sbjct: 55 GIHRNLGVHISRVKSVNLD-QWTQEQIQCMQEMGNGKA 91
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of
Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of
Acap1
Length = 368
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 41 ECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDT 86
+C DC P W+S+ GV +CI CS +HR LGVH S VRS LD+
Sbjct: 47 QCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDS 92
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 311 KPSNLG--VKKIQSKKPSGFVCRC----PPFYQANVLTTTPPRQSLVAVHRGLGVHLSFV 364
+P +G V ++QS + C C P + N+ T + S +HR LGVH S V
Sbjct: 28 EPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCS--GIHRSLGVHFSKV 85
Query: 365 RSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPFNAGQFDSPPPDCT 410
RS LD+ W ++ M GN + A P P C+
Sbjct: 86 RSLTLDS-WEPELVKLMCELGNVIINQIYEARVEAMAVKKPGPSCS 130
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 41 ECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDT 86
+C DC P W+S+ GV +CI CS +HR LGVH S VRS LD+
Sbjct: 47 QCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDS 92
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 311 KPSNLG--VKKIQSKKPSGFVCRC----PPFYQANVLTTTPPRQSLVAVHRGLGVHLSFV 364
+P +G V ++QS + C C P + N+ T + S +HR LGVH S V
Sbjct: 28 EPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCS--GIHRSLGVHFSKV 85
Query: 365 RSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPFNAGQFDSPPPDCT 410
RS LD+ W ++ M GN + A P P C+
Sbjct: 86 RSLTLDS-WEPELVKLMCELGNVIINQIYEARVEAMAVKKPGPSCS 130
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 30/46 (65%)
Query: 41 ECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDT 86
+C DC P W+S+ GV +CI CS +HR LGVH S VRS LD+
Sbjct: 47 QCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDS 92
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 9/106 (8%)
Query: 311 KPSNLG--VKKIQSKKPSGFVCRC----PPFYQANVLTTTPPRQSLVAVHRGLGVHLSFV 364
+P +G V ++QS + C C P + N+ T + S +HR LGVH S V
Sbjct: 28 EPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCS--GIHRSLGVHFSKV 85
Query: 365 RSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPFNAGQFDSPPPDCT 410
RS LD+ W ++ M GN + A P P C+
Sbjct: 86 RSLTLDS-WEPELVKLMCELGNVIINQIYEARVEAMAVKKPGPSCS 130
>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin
Repeats Of Papbeta
Length = 278
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 33/58 (56%)
Query: 42 CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLG 99
C DC A +PTW S G+ CI+CS +HR LGVH S ++S LD T L +G
Sbjct: 20 CCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIG 77
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 42 CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 101
C DC A +P W+S T GVFIC+ CS +HR + +S V+S +LD W Q+ M GN
Sbjct: 39 CADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDA-WEEAQVEFMASHGN 96
Query: 102 ANA 104
A
Sbjct: 97 DAA 99
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%)
Query: 41 ECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLD 85
+C DC A +PTW S GV CI CS VHR LGV S ++S LD
Sbjct: 25 QCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD 69
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 42 CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 101
C DC A +P W+S T GVFIC+ CS +HR + +S V+S +LD W Q+ M GN
Sbjct: 37 CADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDA-WEEAQVEFMASHGN 94
Query: 102 ANA 104
A
Sbjct: 95 DAA 97
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 28/45 (62%)
Query: 41 ECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLD 85
+C DC A +PTW S GV CI CS VHR LGV S ++S LD
Sbjct: 44 QCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLD 88
>pdb|2D9L|A Chain A, Solution Structure Of The Arfgap Domain Of Human Rip
Length = 134
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 26 NSKLLMLQIITFFP--QECFDCNAKNPTWSSVTYGVFICIDCSAVHRGL 72
+S L ML+ +T P ++CFDC+ + PT+ ++T G F+C CS RGL
Sbjct: 5 SSGLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGL 53
>pdb|2OLM|A Chain A, Arfgap Domain Of Hiv-1 Rev Binding Protein
Length = 140
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 23 KVKNSKLLMLQIITFFP--QECFDCNAKNPTWSSVTYGVFICIDCSAVHRGL 72
K + L ML+ +T P ++CFDC+ + PT+ ++T G F+C CS RGL
Sbjct: 7 KQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGL 58
>pdb|3GAZ|A Chain A, Crystal Structure Of An Alcohol Dehydrogenase Superfamily
Protein From Novosphingobium Aromaticivorans
pdb|3GAZ|B Chain B, Crystal Structure Of An Alcohol Dehydrogenase Superfamily
Protein From Novosphingobium Aromaticivorans
Length = 343
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Query: 182 HAAVQAMKIHGTKLF-------LDAMHD--ATHKKGEEEPVDFFAEHTNGDNF 225
H A+Q G ++F L+ + D AT EP D+ AEHT G F
Sbjct: 165 HVAIQIALARGARVFATARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGF 217
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,771,864
Number of Sequences: 62578
Number of extensions: 565801
Number of successful extensions: 1108
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1070
Number of HSP's gapped (non-prelim): 37
length of query: 540
length of database: 14,973,337
effective HSP length: 104
effective length of query: 436
effective length of database: 8,465,225
effective search space: 3690838100
effective search space used: 3690838100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)