Query psy7092
Match_columns 540
No_of_seqs 334 out of 1145
Neff 4.2
Searched_HMMs 29240
Date Fri Aug 16 17:59:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7092.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7092hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2crw_A ARF GAP 3, ADP-ribosyla 100.0 2.4E-40 8.1E-45 305.9 8.8 133 23-201 13-145 (149)
2 2p57_A GTPase-activating prote 100.0 1.8E-38 6E-43 291.8 6.0 126 21-192 19-144 (144)
3 3dwd_A ADP-ribosylation factor 100.0 4.8E-36 1.6E-40 276.2 7.7 117 22-185 21-139 (147)
4 3sub_A ADP-ribosylation factor 100.0 5.4E-36 1.8E-40 279.6 6.2 128 24-200 6-134 (163)
5 2owa_A Arfgap-like finger doma 100.0 1.1E-35 3.7E-40 271.8 5.9 118 22-185 19-137 (138)
6 2iqj_A Stromal membrane-associ 100.0 1.4E-34 4.9E-39 263.2 3.0 110 20-155 8-117 (134)
7 2crr_A Stromal membrane-associ 100.0 4.5E-34 1.5E-38 261.9 3.4 109 21-155 11-119 (141)
8 2olm_A Nucleoporin-like protei 100.0 3.5E-33 1.2E-37 255.7 5.4 111 21-155 7-117 (140)
9 3jue_A Arfgap with coiled-coil 100.0 1.6E-29 5.6E-34 259.2 4.0 90 20-117 26-115 (368)
10 3o47_A ADP-ribosylation factor 99.9 7.8E-29 2.7E-33 249.5 7.8 121 16-183 14-136 (329)
11 3lju_X ARF-GAP with dual PH do 99.9 1.4E-28 4.8E-33 255.2 6.1 93 16-117 11-103 (386)
12 2b0o_E UPLC1; arfgap, structur 99.9 1.9E-25 6.7E-30 220.6 5.6 115 23-160 26-141 (301)
13 1dcq_A PYK2-associated protein 99.9 2.5E-25 8.5E-30 217.2 5.5 118 24-164 2-120 (278)
14 3lvq_E ARF-GAP with SH3 domain 99.9 2.3E-25 7.7E-30 233.1 1.9 119 23-163 7-125 (497)
15 2iqj_A Stromal membrane-associ 99.8 5.8E-22 2E-26 180.4 -1.1 87 319-440 39-128 (134)
16 2crr_A Stromal membrane-associ 99.8 6.2E-22 2.1E-26 181.6 -1.8 88 319-441 41-131 (141)
17 2crw_A ARF GAP 3, ADP-ribosyla 99.7 1.4E-19 4.7E-24 167.5 -2.5 56 319-392 41-97 (149)
18 2owa_A Arfgap-like finger doma 99.7 1.4E-19 4.9E-24 165.4 -2.9 55 319-392 48-103 (138)
19 2olm_A Nucleoporin-like protei 99.7 4.8E-19 1.6E-23 162.3 0.2 90 319-439 37-127 (140)
20 3dwd_A ADP-ribosylation factor 99.7 2.2E-19 7.6E-24 165.6 -3.2 53 320-391 51-104 (147)
21 3sub_A ADP-ribosylation factor 99.7 3.5E-19 1.2E-23 166.5 -2.4 66 319-403 34-113 (163)
22 2p57_A GTPase-activating prote 99.7 3.2E-19 1.1E-23 164.2 -3.6 67 319-403 49-129 (144)
23 3jue_A Arfgap with coiled-coil 99.7 2.3E-18 7.8E-23 176.7 -0.8 92 319-440 57-150 (368)
24 3lju_X ARF-GAP with dual PH do 99.6 4.5E-17 1.5E-21 169.0 -0.3 90 319-439 46-136 (386)
25 3o47_A ADP-ribosylation factor 99.4 1.2E-14 4E-19 146.4 -0.5 54 319-391 49-103 (329)
26 1dcq_A PYK2-associated protein 99.4 7.4E-15 2.5E-19 143.2 -4.8 92 319-440 29-122 (278)
27 2b0o_E UPLC1; arfgap, structur 99.4 1.6E-14 5.6E-19 142.6 -3.4 91 319-439 54-146 (301)
28 3lvq_E ARF-GAP with SH3 domain 99.4 1.7E-14 5.9E-19 150.9 -4.0 91 320-440 36-128 (497)
29 1gnf_A Transcription factor GA 73.7 1.7 5.9E-05 32.8 2.2 38 38-75 3-41 (46)
30 2vut_I AREA, nitrogen regulato 64.8 2.9 0.0001 31.1 1.8 35 40-74 2-37 (43)
31 1u5k_A Hypothetical protein; O 60.3 3.7 0.00013 39.3 2.2 46 37-99 148-193 (244)
32 3dfx_A Trans-acting T-cell-spe 59.9 2.9 9.8E-05 33.6 1.1 38 37-74 5-43 (63)
33 4gat_A Nitrogen regulatory pro 56.7 5.2 0.00018 32.3 2.1 38 37-74 7-45 (66)
34 4hc9_A Trans-acting T-cell-spe 51.3 6 0.0002 34.9 1.8 37 39-75 5-42 (115)
35 3g9m_A Glucocorticoid receptor 41.8 9.9 0.00034 31.9 1.6 30 38-70 1-30 (90)
36 2kae_A GATA-type transcription 41.3 6 0.0002 32.4 0.2 37 38-75 7-46 (71)
37 2han_B Ecdysone receptor; tran 36.0 15 0.00051 32.5 1.9 31 38-71 7-37 (119)
38 1r4i_A Androgen receptor; AR, 34.7 14 0.00048 32.0 1.5 32 37-71 5-36 (105)
39 1hcq_A Protein (estrogen recep 34.4 17 0.00058 30.2 1.9 31 38-71 3-33 (84)
40 2han_A Protein ultraspiracle; 31.7 18 0.00061 30.6 1.6 31 38-71 9-39 (93)
41 2nll_B Protein (thyroid hormon 31.5 13 0.00046 32.0 0.8 29 40-71 2-30 (103)
42 1d4u_A Nucleotide excision rep 31.1 12 0.00042 33.0 0.5 31 38-68 4-35 (111)
43 2ebl_A COUP transcription fact 28.9 18 0.00061 30.5 1.1 32 37-71 5-36 (89)
44 3dzy_D Peroxisome proliferator 28.1 20 0.0007 37.2 1.7 31 37-70 48-78 (419)
45 1cit_A NGFI-B, protein (orphan 28.0 27 0.00092 29.3 2.0 28 41-71 2-29 (89)
46 2a66_A Orphan nuclear receptor 27.3 20 0.00068 31.5 1.2 32 37-71 7-38 (113)
47 1ynw_B Retinoic acid receptor 27.2 18 0.0006 31.1 0.8 30 39-71 3-32 (99)
48 1kb2_A Vitamin D3 receptor; VD 26.9 17 0.00058 31.7 0.6 31 38-71 5-35 (110)
49 1ffk_W Ribosomal protein L37AE 26.8 47 0.0016 27.3 3.2 42 25-68 12-54 (73)
50 1a6y_A Orphan nuclear receptor 26.2 24 0.00081 30.0 1.4 30 38-70 6-35 (94)
51 1dsz_A RAR-alpha, retinoic aci 26.2 19 0.00065 30.0 0.8 29 40-71 5-33 (86)
52 1lo1_A Steroid hormone recepto 26.2 16 0.00056 31.2 0.4 30 39-71 4-33 (98)
53 1apq_A Complement protease C1R 24.8 24 0.00081 25.5 1.0 14 325-338 30-43 (53)
54 4hc9_A Trans-acting T-cell-spe 24.1 36 0.0012 29.9 2.2 39 37-75 57-96 (115)
55 4hn5_A Glucocorticoid receptor 22.3 31 0.0011 30.5 1.5 31 37-70 27-57 (117)
56 1dsz_B RXR-alpha, retinoic aci 21.5 18 0.00061 30.2 -0.3 32 37-71 3-34 (85)
57 2jkh_L Factor X light chain; p 21.3 24 0.00083 26.3 0.5 14 325-338 19-32 (55)
58 2zet_C Melanophilin; complex, 20.6 59 0.002 29.8 3.0 33 38-70 67-104 (153)
59 1edm_B Factor IX; epidermal gr 20.4 29 0.001 23.7 0.7 13 325-337 21-33 (39)
No 1
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=2.4e-40 Score=305.90 Aligned_cols=133 Identities=58% Similarity=1.017 Sum_probs=125.2
Q ss_pred hhchHHHHHHHhcccCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHHHHhcCcC
Q psy7092 23 KVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNA 102 (540)
Q Consensus 23 ~~~n~k~l~~l~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~m~~gGN~ 102 (540)
.++.+++++.|+..|+|+.|+|||+++|+|+|+|||||||++|+||||+||+|||+||||+||++|+++||+.|+.+||.
T Consensus 13 k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~ 92 (149)
T 2crw_A 13 KQDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNA 92 (149)
T ss_dssp HHHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhH
Confidence 35678889999999999999999999999999999999999999999999999999999999955999999999999999
Q ss_pred CcCCCccccchhccccCCCchhHHHHHHHhhhhhcccccCCcchHHHHHHHHhhcCCCCcchhcccCcHHHHHHHHHHHH
Q psy7092 103 NAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQH 182 (540)
Q Consensus 103 ~an~~~e~~l~~W~~~~~~p~~f~k~~~~~~~~~~~~~~~~~~~~~~l~~F~~~~~~~~~~i~~KY~sraA~~YrekL~~ 182 (540)
++| +||.+|++...+|++||++++|++||++|.+
T Consensus 93 ~an----------------------------------------------~~~e~~~~~~~~i~~KY~s~~a~~Yr~~l~~ 126 (149)
T 2crw_A 93 SAS----------------------------------------------SFFHQHGCSTNDTNAKYNSRAAQLYREKIKS 126 (149)
T ss_dssp HHH----------------------------------------------HHHHHHCCCCCCHHHHTTSHHHHHHHHHHHH
T ss_pred HHH----------------------------------------------HHHHhcCCCCcchhhCcCcHHHHHHHHHHHH
Confidence 999 7777778878889999999999999999999
Q ss_pred HHHHHHHHcCCeeeEcCCC
Q psy7092 183 AAVQAMKIHGTKLFLDAMH 201 (540)
Q Consensus 183 ~a~~a~~~~~~~~~~d~~~ 201 (540)
++++++++||++|++|+..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~ 145 (149)
T 2crw_A 127 LASQATRKHGTDLWLDSSG 145 (149)
T ss_dssp HHHHHHHTTSSSCTTSCCC
T ss_pred HHHHHHHHcCCeeEeCCCC
Confidence 9999999999999998854
No 2
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=291.81 Aligned_cols=126 Identities=59% Similarity=1.052 Sum_probs=116.0
Q ss_pred hhhhchHHHHHHHhcccCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHHHHhcC
Q psy7092 21 LEKVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGG 100 (540)
Q Consensus 21 ~e~~~n~k~l~~l~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~m~~gG 100 (540)
..++..+++++.|+..|+|+.|+|||+++|+|+|+|||||||++|||+||+||+|||+|||++||+.|+++||+.|+.+|
T Consensus 19 ~~k~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~G 98 (144)
T 2p57_A 19 PNKTEIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGG 98 (144)
T ss_dssp CCHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhC
Confidence 35566778888888899999999999999999999999999999999999999999999999999559999999999999
Q ss_pred cCCcCCCccccchhccccCCCchhHHHHHHHhhhhhcccccCCcchHHHHHHHHhhcCCCCcchhcccCcHHHHHHHHHH
Q psy7092 101 NANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTSKDAQQKYNSRAAQLYREKL 180 (540)
Q Consensus 101 N~~an~~~e~~l~~W~~~~~~p~~f~k~~~~~~~~~~~~~~~~~~~~~~l~~F~~~~~~~~~~i~~KY~sraA~~YrekL 180 (540)
|.++| +||.+||+...+++.||++++|++||++|
T Consensus 99 N~~an----------------------------------------------~~~e~~g~~~~~~~~KY~s~aA~~Yr~~l 132 (144)
T 2p57_A 99 NANAT----------------------------------------------AFFRQHGCTANDANTKYNSRAAQMYREKI 132 (144)
T ss_dssp HHHHH----------------------------------------------HHHHHTTCCCCSHHHHHTSHHHHHHHHHH
T ss_pred HHHHH----------------------------------------------HHHHHcCCCCCchhhccCcHHHHHHHHHH
Confidence 99999 88888898888999999999999999999
Q ss_pred HHHHHHHHHHcC
Q psy7092 181 QHAAVQAMKIHG 192 (540)
Q Consensus 181 ~~~a~~a~~~~~ 192 (540)
.+++++++++||
T Consensus 133 ~~~~~~~~~~~~ 144 (144)
T 2p57_A 133 RQLGSAALARHG 144 (144)
T ss_dssp HHHHHHTCC---
T ss_pred HHHHHHHHHHhC
Confidence 999999998875
No 3
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.8e-36 Score=276.23 Aligned_cols=117 Identities=44% Similarity=0.787 Sum_probs=104.6
Q ss_pred hhhchHHHHHHHhcccCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHHHHhcCc
Q psy7092 22 EKVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 101 (540)
Q Consensus 22 e~~~n~k~l~~l~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~m~~gGN 101 (540)
..++++++|+.|+..|+|+.|+|||+++|+|+|+|||||||++||||||+||+|||+||||+||+ |+++||+.|+.+||
T Consensus 21 ~~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~-W~~~el~~m~~~GN 99 (147)
T 3dwd_A 21 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDK-WKDIELEKMKAGGN 99 (147)
T ss_dssp -CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC---CCHHHHHHHHHCCH
T ss_pred CCHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccC-CCHHHHHHHHHHhh
Confidence 44789999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCcCCCccccchhccccCCCchhHHHHHHHhhhhhcccccCCcchHHHHHHHHhhcCCC--CcchhcccCcHHHHHHHHH
Q psy7092 102 ANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCT--SKDAQQKYNSRAAQLYREK 179 (540)
Q Consensus 102 ~~an~~~e~~l~~W~~~~~~p~~f~k~~~~~~~~~~~~~~~~~~~~~~l~~F~~~~~~~--~~~i~~KY~sraA~~Yrek 179 (540)
.++| +||.+|+.. ..++++||++++|++||++
T Consensus 100 ~~an----------------------------------------------~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~ 133 (147)
T 3dwd_A 100 AKFR----------------------------------------------EFLESQEDYDPCWSLQEKYNSRAAALFRDK 133 (147)
T ss_dssp HHHH----------------------------------------------HHHHTSTTCCTTCCHHHHHTSHHHHHHHHH
T ss_pred HHHH----------------------------------------------HHHHhCCCCCCCCCHHHhhCCHHHHHHHHH
Confidence 9999 555555432 3468999999999999999
Q ss_pred HHHHHH
Q psy7092 180 LQHAAV 185 (540)
Q Consensus 180 L~~~a~ 185 (540)
|..+++
T Consensus 134 l~~~~e 139 (147)
T 3dwd_A 134 VVALAE 139 (147)
T ss_dssp HHHHHC
T ss_pred HHHHHc
Confidence 998764
No 4
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=5.4e-36 Score=279.62 Aligned_cols=128 Identities=34% Similarity=0.584 Sum_probs=115.9
Q ss_pred hchHHHHHHHhcc-cCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHHHHhcCcC
Q psy7092 24 VKNSKLLMLQIIT-FFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNA 102 (540)
Q Consensus 24 ~~n~k~l~~l~~~-p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~m~~gGN~ 102 (540)
....++|+.|+.. |+|+.|+|||+++|+|+|++||||||++|||+||+||+|||+||||+||. |++++|+.|+.+||.
T Consensus 6 a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~-Wt~e~l~~m~~~GN~ 84 (163)
T 3sub_A 6 AAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDI-FTDEQLKYIDKGGNK 84 (163)
T ss_dssp HHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCC-CCHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccC-cCHHHHHHHHhhCHH
Confidence 4566778888874 89999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CcCCCccccchhccccCCCchhHHHHHHHhhhhhcccccCCcchHHHHHHHHhhcCCCCcchhcccCcHHHHHHHHHHHH
Q psy7092 103 NAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTSKDAQQKYNSRAAQLYREKLQH 182 (540)
Q Consensus 103 ~an~~~e~~l~~W~~~~~~p~~f~k~~~~~~~~~~~~~~~~~~~~~~l~~F~~~~~~~~~~i~~KY~sraA~~YrekL~~ 182 (540)
++| +||.+||+....++.||.+++|++||++|+.
T Consensus 85 ~an----------------------------------------------~~~e~~g~~~~~p~~KY~s~aA~~Yr~~L~~ 118 (163)
T 3sub_A 85 KCQ----------------------------------------------TYLENYGISDFIPERKYRTKAADHYRKILRS 118 (163)
T ss_dssp HHH----------------------------------------------HHHHHTTCTTSCHHHHTTBHHHHHHHHHHHH
T ss_pred HHH----------------------------------------------HHHHHcCCcccChhhcCCCHHHHHHHHHHHH
Confidence 999 7888888877777889999999999999999
Q ss_pred HHHHHHHHcCCeeeEcCC
Q psy7092 183 AAVQAMKIHGTKLFLDAM 200 (540)
Q Consensus 183 ~a~~a~~~~~~~~~~d~~ 200 (540)
.+.. ..+|+.+.|++.
T Consensus 119 ~v~~--~~~p~~~~~~~~ 134 (163)
T 3sub_A 119 IVHN--VDPPAPLPLDEG 134 (163)
T ss_dssp HHTT--CCCCCCCCGGGT
T ss_pred HHcC--CCCCCCCccccc
Confidence 9877 477777777553
No 5
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.1e-35 Score=271.78 Aligned_cols=118 Identities=33% Similarity=0.647 Sum_probs=103.7
Q ss_pred hhhchHHHHHHHhcccCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHHHHhcCc
Q psy7092 22 EKVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 101 (540)
Q Consensus 22 e~~~n~k~l~~l~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~m~~gGN 101 (540)
+++..++++..|+..|+|+.|+|||+++|+|+|+|||||||++|||+||+||+|||+||||+||+ |++++|+.|+.+||
T Consensus 19 ~~~~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~-w~~~~l~~m~~~GN 97 (138)
T 2owa_A 19 SDKLRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDK-FTPIQLVRMDIGGN 97 (138)
T ss_dssp CHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSC-CCHHHHHHHHHCCH
T ss_pred CHHHHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCc-CCHHHHHHHHhhcc
Confidence 44456667777888999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCcCCCccccchhccccCCCchhHHHHHHHhhhhhcccccCCcchHHHHHHHHhhcCCC-CcchhcccCcHHHHHHHHHH
Q psy7092 102 ANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCT-SKDAQQKYNSRAAQLYREKL 180 (540)
Q Consensus 102 ~~an~~~e~~l~~W~~~~~~p~~f~k~~~~~~~~~~~~~~~~~~~~~~l~~F~~~~~~~-~~~i~~KY~sraA~~YrekL 180 (540)
.++| .||++. ||.. ..++++||++++|++||++|
T Consensus 98 ~~an-------~~~e~~--------------------------------------~~~~~~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 98 GRAR-------NYFKQV--------------------------------------LGVNFSPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHHH-------HHHHHH--------------------------------------TCTTCCGGGCHHHHSHHHHHHHHHH
T ss_pred HHHH-------HHHHHH--------------------------------------cCCCCCCCHHHHHhhHHHHHHHHHH
Confidence 9999 444430 4443 34689999999999999999
Q ss_pred HHHHH
Q psy7092 181 QHAAV 185 (540)
Q Consensus 181 ~~~a~ 185 (540)
.+.++
T Consensus 133 ~~~~~ 137 (138)
T 2owa_A 133 DSEIS 137 (138)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 98754
No 6
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=263.20 Aligned_cols=110 Identities=35% Similarity=0.623 Sum_probs=93.4
Q ss_pred hhhhhchHHHHHHHhcccCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHHHHhc
Q psy7092 20 HLEKVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLG 99 (540)
Q Consensus 20 ~~e~~~n~k~l~~l~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~m~~g 99 (540)
..+.++++++|+.|+..|+|+.|+|||+++|+|+|+|||||||++|||+||+||+|||+||||+||+ |++++|+.|+.+
T Consensus 8 ~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~-w~~~~l~~m~~~ 86 (134)
T 2iqj_A 8 VKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQ-WTQEQIQCMQEM 86 (134)
T ss_dssp -----CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSC-CCHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccC-CCHHHHHHHHHH
Confidence 4577899999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CcCCcCCCccccchhccccCCCchhHHHHHHHhhhhhcccccCCcchHHHHHHHHh
Q psy7092 100 GNANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFN 155 (540)
Q Consensus 100 GN~~an~~~e~~l~~W~~~~~~p~~f~k~~~~~~~~~~~~~~~~~~~~~~l~~F~~ 155 (540)
||..+| .+|++ .+|.. +..++.++.+++||+
T Consensus 87 GN~~an-------~~~e~--~lp~~----------------~~~P~~~~~~e~fIr 117 (134)
T 2iqj_A 87 GNGKAN-------RLYEA--YLPET----------------FRRPQIDPAVEGFIR 117 (134)
T ss_dssp HHHHHH-------HHHTT--TCCSS----------------CCCCCSHHHHHHHHH
T ss_pred chHHHH-------HHHHh--cCCcc----------------CCCCCchHHHHHHHH
Confidence 999999 67766 12221 233445678899965
No 7
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.98 E-value=4.5e-34 Score=261.88 Aligned_cols=109 Identities=39% Similarity=0.626 Sum_probs=95.3
Q ss_pred hhhhchHHHHHHHhcccCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHHHHhcC
Q psy7092 21 LEKVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGG 100 (540)
Q Consensus 21 ~e~~~n~k~l~~l~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~m~~gG 100 (540)
...++++++|+.|+..|+|+.|+|||+++|+|+|+|||||||++|+||||+||+|||+||||+||+ |++++|+.|+.+|
T Consensus 11 ~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~-w~~~~l~~m~~~G 89 (141)
T 2crr_A 11 KLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQ-WTAEQIQCMQDMG 89 (141)
T ss_dssp TTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSC-CCHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCC-CCHHHHHHHHHHc
Confidence 355789999999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred cCCcCCCccccchhccccCCCchhHHHHHHHhhhhhcccccCCcchHHHHHHHHh
Q psy7092 101 NANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFN 155 (540)
Q Consensus 101 N~~an~~~e~~l~~W~~~~~~p~~f~k~~~~~~~~~~~~~~~~~~~~~~l~~F~~ 155 (540)
|..+| .+|++ .+|.. +..++.++.+++||+
T Consensus 90 N~~an-------~~~e~--~lp~~----------------~~~P~~~~~~e~fIr 119 (141)
T 2crr_A 90 NTKAR-------LLYEA--NLPEN----------------FRRPQTDQAVEFFIR 119 (141)
T ss_dssp HHHHH-------HHGGG--SCCTT----------------CCCCCSHHHHHHHHH
T ss_pred cHHHH-------HHHHh--cCCcc----------------cCCCCchHHHHHHHH
Confidence 99999 67766 22222 223345567899955
No 8
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=99.97 E-value=3.5e-33 Score=255.71 Aligned_cols=111 Identities=25% Similarity=0.442 Sum_probs=95.7
Q ss_pred hhhhchHHHHHHHhcccCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHHHHhcC
Q psy7092 21 LEKVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGG 100 (540)
Q Consensus 21 ~e~~~n~k~l~~l~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~m~~gG 100 (540)
.+.+++.+.|+.|+..|+|+.|+|||+++|+|+|+|||||||++||||||+||+| |+||||+||+ |++++|+.|+.+|
T Consensus 7 ~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~-w~~~~l~~m~~~G 84 (140)
T 2olm_A 7 KQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTT-FTQQEIEFLQKHG 84 (140)
T ss_dssp HHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCC-CCHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCC-CCHHHHHHHHHhc
Confidence 4667999999999999999999999999999999999999999999999999997 9999999999 9999999999999
Q ss_pred cCCcCCCccccchhccccCCCchhHHHHHHHhhhhhcccccCCcchHHHHHHHHh
Q psy7092 101 NANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFN 155 (540)
Q Consensus 101 N~~an~~~e~~l~~W~~~~~~p~~f~k~~~~~~~~~~~~~~~~~~~~~~l~~F~~ 155 (540)
|..+| .+|++. ++......|...+.+.+++||+
T Consensus 85 N~~an-------~~~e~~---------------~~~~~~~~P~~~d~~~~~~fIr 117 (140)
T 2olm_A 85 NEVCK-------QIWLGL---------------FDDRSSAIPDFRDPQKVKEFLQ 117 (140)
T ss_dssp HHHHH-------HHHTTT---------------CCTTTSCCCCTTCHHHHHHHHH
T ss_pred cHHHH-------HHHHhh---------------CCcccCCCCCCCCHHHHHHHHH
Confidence 99999 677661 1111123444556778899954
No 9
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.95 E-value=1.6e-29 Score=259.20 Aligned_cols=90 Identities=32% Similarity=0.552 Sum_probs=81.8
Q ss_pred hhhhhchHHHHHHHhcccCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHHHHhc
Q psy7092 20 HLEKVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLG 99 (540)
Q Consensus 20 ~~e~~~n~k~l~~l~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~m~~g 99 (540)
++++++++++|..|+..|+|+.|+|||+++|+|+|+|||||||++||||||+||+|||+||||+||+ |++++|+.|+.+
T Consensus 26 ~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~-w~~~~~~~~~~~ 104 (368)
T 3jue_A 26 GREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDS-WEPELVKLMCEL 104 (368)
T ss_dssp ------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSC-CCHHHHHHHHHS
T ss_pred hhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeeccc-ccHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CcCCcCCCccccchhccc
Q psy7092 100 GNANAPNGQNTRLSLWRS 117 (540)
Q Consensus 100 GN~~an~~~e~~l~~W~~ 117 (540)
||..+| .+|++
T Consensus 105 gn~~~n-------~~~e~ 115 (368)
T 3jue_A 105 GNVIIN-------QIYEA 115 (368)
T ss_dssp CHHHHH-------HHHTT
T ss_pred ccHHHH-------HHHHh
Confidence 999999 67766
No 10
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=7.8e-29 Score=249.51 Aligned_cols=121 Identities=43% Similarity=0.779 Sum_probs=102.9
Q ss_pred hhhhhhhhhchHHHHHHHhcccCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHH
Q psy7092 16 QYLFHLEKVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQ 95 (540)
Q Consensus 16 ~~~~~~e~~~n~k~l~~l~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~ 95 (540)
.|--.+..++++++++.|+..|+|+.|+|||+++|+|+|+|||||||++|||+||+||+|||+|||++||. |++++|+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~-~~~~~~~~ 92 (329)
T 3o47_A 14 LYFQGMASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDK-WKDIELEK 92 (329)
T ss_dssp ---------CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCC-CCHHHHHH
T ss_pred hhccccCCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccC-CCHHHHHH
Confidence 34445567899999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHhcCcCCcCCCccccchhccccCCCchhHHHHHHHhhhhhcccccCCcchHHHHHHHHhhcCCC--CcchhcccCcHHH
Q psy7092 96 MQLGGNANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCT--SKDAQQKYNSRAA 173 (540)
Q Consensus 96 m~~gGN~~an~~~e~~l~~W~~~~~~p~~f~k~~~~~~~~~~~~~~~~~~~~~~l~~F~~~~~~~--~~~i~~KY~sraA 173 (540)
|+.+||.++| +||.+++.. ...+..+|.++++
T Consensus 93 ~~~~gN~~~n----------------------------------------------~~~e~~~~~~~~~~i~~~y~s~~A 126 (329)
T 3o47_A 93 MKAGGNAKFR----------------------------------------------EFLESQEDYDPCWSLQEKYNSRAA 126 (329)
T ss_dssp HHHCCHHHHH----------------------------------------------HHHHTCSSCCTTCCHHHHHHSHHH
T ss_pred HHHhCcHHHH----------------------------------------------HHHHhcCCCCCCCCccccccchHH
Confidence 9999999999 555555432 2358899999999
Q ss_pred HHHHHHHHHH
Q psy7092 174 QLYREKLQHA 183 (540)
Q Consensus 174 ~~YrekL~~~ 183 (540)
..|++++...
T Consensus 127 ~lYr~kl~~~ 136 (329)
T 3o47_A 127 ALFRDKVVAL 136 (329)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhhhcccc
Confidence 9999998763
No 11
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.95 E-value=1.4e-28 Score=255.17 Aligned_cols=93 Identities=31% Similarity=0.582 Sum_probs=87.5
Q ss_pred hhhhhhhhhchHHHHHHHhcccCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHH
Q psy7092 16 QYLFHLEKVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQ 95 (540)
Q Consensus 16 ~~~~~~e~~~n~k~l~~l~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~ 95 (540)
+--..++++++++.|+.|+..|+|+.|+|||+++|+|||+|||||||++||||||+| +|||+||||+||. |++++|+.
T Consensus 11 ~~~~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~-w~~~~~~~ 88 (386)
T 3lju_X 11 RENLYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDA-WEEAQVEF 88 (386)
T ss_dssp GGSHHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSC-CCHHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccC-CCHHHHHH
Confidence 344566889999999999999999999999999999999999999999999999999 9999999999999 99999999
Q ss_pred HHhcCcCCcCCCccccchhccc
Q psy7092 96 MQLGGNANAPNGQNTRLSLWRS 117 (540)
Q Consensus 96 m~~gGN~~an~~~e~~l~~W~~ 117 (540)
|+.+||..+| .+|++
T Consensus 89 ~~~~gN~~~~-------~~~e~ 103 (386)
T 3lju_X 89 MASHGNDAAR-------ARFES 103 (386)
T ss_dssp HHHSSHHHHH-------HHHTT
T ss_pred HHHhcchHHH-------HHHhc
Confidence 9999999999 66666
No 12
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=1.9e-25 Score=220.59 Aligned_cols=115 Identities=26% Similarity=0.318 Sum_probs=93.3
Q ss_pred hhchHHHHHHHhcccCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHHHHhcCcC
Q psy7092 23 KVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNA 102 (540)
Q Consensus 23 ~~~n~k~l~~l~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~m~~gGN~ 102 (540)
++..++++..+...|+|+.|+|||+++|+|+|++||||+|++|||+||+||+|||+|||++||. |++.+|..|..+||.
T Consensus 26 ~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~-w~~~~l~~~~~~GN~ 104 (301)
T 2b0o_E 26 HDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDL-LGPSELLLALNMGNT 104 (301)
T ss_dssp -CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSC-CCHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCC-CCHHHHHHHHHcCCH
Confidence 3456667788888999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CcCCCccccchhccccCCCchhHHHHHHHhhhhhcc-cccCCcchHHHHHHHHhhcCCC
Q psy7092 103 NAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEM-YHFSISTTAQALVSFFNQHNCT 160 (540)
Q Consensus 103 ~an~~~e~~l~~W~~~~~~p~~f~k~~~~~~~~~~~-~~~~~~~~~~~l~~F~~~~~~~ 160 (540)
.+| .+|++ .++... .......+...+++||+..+..
T Consensus 105 ~~n-------~i~E~---------------~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~ 141 (301)
T 2b0o_E 105 SFN-------EVMEA---------------QLPSHGGPKPSAESDMGTRRDYIMAKYVE 141 (301)
T ss_dssp HHH-------HHHTT---------------TCCSSSCSCCCTTCCHHHHHHHHHHHHTS
T ss_pred HHH-------HHHHH---------------hhhhccCCCCCCcccHHHHHHHHHHHHHh
Confidence 999 56655 112211 1222345667788887654443
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.91 E-value=2.5e-25 Score=217.16 Aligned_cols=118 Identities=26% Similarity=0.361 Sum_probs=96.6
Q ss_pred hchHHHHHHHhcccCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHHHHhcCcCC
Q psy7092 24 VKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNAN 103 (540)
Q Consensus 24 ~~n~k~l~~l~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~m~~gGN~~ 103 (540)
|..+++++.++..|+|+.|+|||+.+|+|+|++||||||++|||+||+||+|||+|||++||. |++.++..|+.+||..
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~-~~~~~l~~~~~~GN~~ 80 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV-LGTSELLLAKNIGNAG 80 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSC-CCGGGGHHHHHSCHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCC-CCHHHHHHHHHcCcHH
Confidence 457788899999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred cCCCccccchhccccCCCchhHHHHHHHhhhhhccc-ccCCcchHHHHHHHHhhcCCCCcch
Q psy7092 104 APNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMY-HFSISTTAQALVSFFNQHNCTSKDA 164 (540)
Q Consensus 104 an~~~e~~l~~W~~~~~~p~~f~k~~~~~~~~~~~~-~~~~~~~~~~l~~F~~~~~~~~~~i 164 (540)
+| .+|++. ++.... .+.+..+.....+|++..+....+.
T Consensus 81 ~n-------~i~e~~---------------l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~ 120 (278)
T 1dcq_A 81 FN-------EIMECC---------------LPSEDPVKPNPGSDMIARKDYITAKYMERRYA 120 (278)
T ss_dssp HH-------HHHTTT---------------CCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTS
T ss_pred HH-------HHHHhh---------------CChhhcCCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence 99 666651 121111 2233456677889977555544443
No 14
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=2.3e-25 Score=233.12 Aligned_cols=119 Identities=25% Similarity=0.310 Sum_probs=96.8
Q ss_pred hhchHHHHHHHhcccCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHHHHhcCcC
Q psy7092 23 KVKNSKLLMLQIITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNA 102 (540)
Q Consensus 23 ~~~n~k~l~~l~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~m~~gGN~ 102 (540)
++.+++.++.+...|+|+.|+|||+++|+|+|+|+|||+|+.|||+||+||+|||+|||++||. |++++++.|+.+||.
T Consensus 7 ~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~-w~~~~~~l~~~~GN~ 85 (497)
T 3lvq_E 7 HDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDL-LGPSELLLALNMGNT 85 (497)
T ss_dssp -CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSC-CCGGGGTTTTTCCHH
T ss_pred HHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCC-CCHHHHHHHHHHhhH
Confidence 4678889999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred CcCCCccccchhccccCCCchhHHHHHHHhhhhhcccccCCcchHHHHHHHHhhcCCCCcc
Q psy7092 103 NAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCTSKD 163 (540)
Q Consensus 103 ~an~~~e~~l~~W~~~~~~p~~f~k~~~~~~~~~~~~~~~~~~~~~~l~~F~~~~~~~~~~ 163 (540)
.+| .+|++. +|. ..........+....++|+++.+....+
T Consensus 86 ~an-------~i~E~~--lp~------------~~~~kP~~~s~~~~re~fIraky~~~~f 125 (497)
T 3lvq_E 86 SFN-------EVMEAQ--LPS------------HGGPKPSAESDMGTRRDYIMAKYVEHRF 125 (497)
T ss_dssp HHH-------HHHTTT--CCS------------SSCSCCCTTCCHHHHHHHHHHHHTTCTT
T ss_pred HHH-------HHHHhh--ccc------------ccCCCCCCcCcHHHHHHHHHHHhhcccc
Confidence 999 666651 111 1112223345556778897755544333
No 15
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=99.82 E-value=5.8e-22 Score=180.35 Aligned_cols=87 Identities=33% Similarity=0.515 Sum_probs=73.8
Q ss_pred ccccCCCCcccc-cCCcccccccccCCCCCCccccccccCceeeeeeeecccCCCCCHHHHHHHHhcccccchhcccCCC
Q psy7092 319 KIQSKKPSGFVC-RCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPF 397 (540)
Q Consensus 319 ~~~~~~~~~f~c-rc~~~~~~~~~~~~~~~~~~sgIHR~LGVHISkVkS~~LDs~Wt~EQv~~Mq~gGN~~a~~~kY~~~ 397 (540)
.+.+-++|.|+| +| |||||+||||||+||||+||+ |+++||+.|+.+||..+|.. |+.
T Consensus 39 ~WaS~n~GvfiC~~C------------------sgiHR~lG~hiS~VkSl~ld~-w~~~~l~~m~~~GN~~an~~-~e~- 97 (134)
T 2iqj_A 39 RWASWNIGVFICIRC------------------AGIHRNLGVHISRVKSVNLDQ-WTQEQIQCMQEMGNGKANRL-YEA- 97 (134)
T ss_dssp CEEETTTTEEECHHH------------------HHHHHHHCTTTCCEEETTTSC-CCHHHHHHHHTCHHHHHHHH-HTT-
T ss_pred CeEEecCCEEEhHhh------------------hHHHhcCCCCCCceeeccccC-CCHHHHHHHHHHchHHHHHH-HHh-
Confidence 456778999999 89 999999999999999999999 99999999999999999998 554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--CCcccccccccCCCCCcccCC
Q psy7092 398 NAGQFDSPPPDCTHTLPLAFTP--SGMGFASMSRSGGLGGKKLGK 440 (540)
Q Consensus 398 ~A~~yK~~~P~s~~~lp~~~~~--s~~~~~~fir~~~~~~k~~~~ 440 (540)
.+|+.+.+ .+..++.|||.||+.++|+.+
T Consensus 98 --------------~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~ 128 (134)
T 2iqj_A 98 --------------YLPETFRRPQIDPAVEGFIRDKYEKKKYMDR 128 (134)
T ss_dssp --------------TCCSSCCCCCSHHHHHHHHHHHHTSCTTCCT
T ss_pred --------------cCCccCCCCCchHHHHHHHHHHHhCCeeeCC
Confidence 44444433 234678899999999999854
No 16
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=6.2e-22 Score=181.56 Aligned_cols=88 Identities=34% Similarity=0.485 Sum_probs=74.0
Q ss_pred ccccCCCCcccc-cCCcccccccccCCCCCCccccccccCceeeeeeeecccCCCCCHHHHHHHHhcccccchhcccCCC
Q psy7092 319 KIQSKKPSGFVC-RCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPF 397 (540)
Q Consensus 319 ~~~~~~~~~f~c-rc~~~~~~~~~~~~~~~~~~sgIHR~LGVHISkVkS~~LDs~Wt~EQv~~Mq~gGN~~a~~~kY~~~ 397 (540)
.+.+-++|.||| +| |||||+|||||||||||+||+ |+++||+.|+.+||..+|.. |+
T Consensus 41 ~WaS~n~GvfiC~~C------------------sgiHR~LG~hiS~VkSl~ld~-w~~~~l~~m~~~GN~~an~~-~e-- 98 (141)
T 2crr_A 41 RWASWNIGVFICIRC------------------AGIHRNLGVHISRVKSVNLDQ-WTAEQIQCMQDMGNTKARLL-YE-- 98 (141)
T ss_dssp CSEETTTTEECCHHH------------------HHHHHHHCTTTCCCBCSSSSC-CCHHHHHHHHHTHHHHHHHH-GG--
T ss_pred CeEEeccCeEEhhhh------------------hHhHhcCCCCCCeeeECCCCC-CCHHHHHHHHHHccHHHHHH-HH--
Confidence 356778999999 89 999999999999999999999 99999999999999999998 44
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC--CCcccccccccCCCCCcccCCC
Q psy7092 398 NAGQFDSPPPDCTHTLPLAFTP--SGMGFASMSRSGGLGGKKLGKG 441 (540)
Q Consensus 398 ~A~~yK~~~P~s~~~lp~~~~~--s~~~~~~fir~~~~~~k~~~~g 441 (540)
+.+|+.+.+ ++..++.|||.||+.++|+.+.
T Consensus 99 -------------~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~ 131 (141)
T 2crr_A 99 -------------ANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKN 131 (141)
T ss_dssp -------------GSCCTTCCCCCSHHHHHHHHHHHHTSCTTCCCG
T ss_pred -------------hcCCcccCCCCchHHHHHHHHHHHhcCcccCCC
Confidence 444444432 2346788999999999998543
No 17
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-19 Score=167.45 Aligned_cols=56 Identities=55% Similarity=0.962 Sum_probs=52.1
Q ss_pred ccccCCCCcccc-cCCcccccccccCCCCCCccccccccCceeeeeeeecccCCCCCHHHHHHHHhcccccchhc
Q psy7092 319 KIQSKKPSGFVC-RCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKA 392 (540)
Q Consensus 319 ~~~~~~~~~f~c-rc~~~~~~~~~~~~~~~~~~sgIHR~LGVHISkVkS~~LDs~Wt~EQv~~Mq~gGN~~a~~~ 392 (540)
.+.+-++|.||| +| |||||+|||||||||||+||++|+++||+.|+.+||.++|..
T Consensus 41 ~WaS~n~GvfiC~~C------------------sgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~ 97 (149)
T 2crw_A 41 SWASITYGVFLCIDC------------------SGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNASASSF 97 (149)
T ss_dssp CCEETTTTEECCHHH------------------HHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHHHHHH
T ss_pred CcEEeccCEEEchhc------------------chhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHHHHHH
Confidence 466778999999 89 999999999999999999996699999999999999999883
No 18
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=99.72 E-value=1.4e-19 Score=165.44 Aligned_cols=55 Identities=44% Similarity=0.721 Sum_probs=51.8
Q ss_pred ccccCCCCcccc-cCCcccccccccCCCCCCccccccccCceeeeeeeecccCCCCCHHHHHHHHhcccccchhc
Q psy7092 319 KIQSKKPSGFVC-RCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKA 392 (540)
Q Consensus 319 ~~~~~~~~~f~c-rc~~~~~~~~~~~~~~~~~~sgIHR~LGVHISkVkS~~LDs~Wt~EQv~~Mq~gGN~~a~~~ 392 (540)
.+.+-++|.|+| +| |||||+|||||||||||+||+ |+++||+.|+.+||..+|..
T Consensus 48 ~WaS~n~GvfiC~~C------------------sgiHR~LG~hiS~VrSl~lD~-w~~~~l~~m~~~GN~~an~~ 103 (138)
T 2owa_A 48 TWLSLSFAVFICLNC------------------SSDHRKMGVHISFVRSSDLDK-FTPIQLVRMDIGGNGRARNY 103 (138)
T ss_dssp CEEETTTTEEECHHH------------------HHHHHTTCTTTCCEEETTTSC-CCHHHHHHHHHCCHHHHHHH
T ss_pred CeEEecCCEEEhHhh------------------hHHHhCCCCCCCeeeecCcCc-CCHHHHHHHHhhccHHHHHH
Confidence 456778999999 89 999999999999999999999 99999999999999999885
No 19
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=99.72 E-value=4.8e-19 Score=162.26 Aligned_cols=90 Identities=19% Similarity=0.208 Sum_probs=70.9
Q ss_pred ccccCCCCcccc-cCCcccccccccCCCCCCccccccccCceeeeeeeecccCCCCCHHHHHHHHhcccccchhcccCCC
Q psy7092 319 KIQSKKPSGFVC-RCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPF 397 (540)
Q Consensus 319 ~~~~~~~~~f~c-rc~~~~~~~~~~~~~~~~~~sgIHR~LGVHISkVkS~~LDs~Wt~EQv~~Mq~gGN~~a~~~kY~~~ 397 (540)
.+.+-++|.||| +| |||||+|||| |+||||+||+ |+++||+.|+.+||..+|.. |+..
T Consensus 37 ~WaS~n~GvfiC~~C------------------sgiHR~LG~~-s~VrSl~ld~-w~~~~l~~m~~~GN~~an~~-~e~~ 95 (140)
T 2olm_A 37 TYVNMTVGSFVCTSC------------------SGSLRGLNPP-HRVKSISMTT-FTQQEIEFLQKHGNEVCKQI-WLGL 95 (140)
T ss_dssp CEEETTTTEEECHHH------------------HHHHTTSSSC-CCEEETTTCC-CCHHHHHHHHHCHHHHHHHH-HTTT
T ss_pred CceeeccCEEEchhc------------------cchhccCCCc-ceeeecCCCC-CCHHHHHHHHHhccHHHHHH-HHhh
Confidence 456778999999 89 9999999998 9999999999 99999999999999999987 6654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCcccC
Q psy7092 398 NAGQFDSPPPDCTHTLPLAFTPSGMGFASMSRSGGLGGKKLG 439 (540)
Q Consensus 398 ~A~~yK~~~P~s~~~lp~~~~~s~~~~~~fir~~~~~~k~~~ 439 (540)
.... ..+.|+. .....++.|||.||+.++|+.
T Consensus 96 ~~~~-~~~~P~~---------~d~~~~~~fIr~KYe~k~f~~ 127 (140)
T 2olm_A 96 FDDR-SSAIPDF---------RDPQKVKEFLQEKYEKKRWYV 127 (140)
T ss_dssp CCTT-TSCCCCT---------TCHHHHHHHHHHHHTSCTTCC
T ss_pred CCcc-cCCCCCC---------CCHHHHHHHHHHHHcCCeeeC
Confidence 4321 1112221 112356779999999999973
No 20
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.71 E-value=2.2e-19 Score=165.57 Aligned_cols=53 Identities=45% Similarity=0.804 Sum_probs=48.3
Q ss_pred cccCCCCcccc-cCCcccccccccCCCCCCccccccccCceeeeeeeecccCCCCCHHHHHHHHhcccccchh
Q psy7092 320 IQSKKPSGFVC-RCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMK 391 (540)
Q Consensus 320 ~~~~~~~~f~c-rc~~~~~~~~~~~~~~~~~~sgIHR~LGVHISkVkS~~LDs~Wt~EQv~~Mq~gGN~~a~~ 391 (540)
+.+-++|.|+| +| |||||+|||||||||||+||+ |+++||+.|+.+||.+++.
T Consensus 51 WaS~nlGvfiC~~C------------------SgiHR~LG~hISkVkSl~LD~-W~~~el~~m~~~GN~~an~ 104 (147)
T 3dwd_A 51 WVSVTYGIWICLEC------------------SGRHRGLGVHLSFVRSVTMDK-WKDIELEKMKAGGNAKFRE 104 (147)
T ss_dssp EEETTTTEEECHHH------------------HHHHHHHCTTTCCEEESCC---CCHHHHHHHHHCCHHHHHH
T ss_pred eEEecccEeEhHhh------------------ChHHhcCCCCCCccccccccC-CCHHHHHHHHHHhhHHHHH
Confidence 55778999999 89 999999999999999999999 9999999999999999887
No 21
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.70 E-value=3.5e-19 Score=166.49 Aligned_cols=66 Identities=35% Similarity=0.598 Sum_probs=59.4
Q ss_pred ccccCCCCcccc-cCCcccccccccCCCCCCccccccccCceeeeeeeecccCCCCCHHHHHHHHhcccccchh------
Q psy7092 319 KIQSKKPSGFVC-RCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMK------ 391 (540)
Q Consensus 319 ~~~~~~~~~f~c-rc~~~~~~~~~~~~~~~~~~sgIHR~LGVHISkVkS~~LDs~Wt~EQv~~Mq~gGN~~a~~------ 391 (540)
.+.+-++|.|+| +| |||||+|||||||||||+||+ |+++||+.|+.+||.+++.
T Consensus 34 ~WaS~nlGvflCi~C------------------SGiHR~LG~hISkVKSltLD~-Wt~e~l~~m~~~GN~~an~~~e~~g 94 (163)
T 3sub_A 34 DWVSVNHGIFLCINC------------------SGVHRSLGVHISIVRSIKMDI-FTDEQLKYIDKGGNKKCQTYLENYG 94 (163)
T ss_dssp CEEETTTTEEECHHH------------------HHHHHHTCTTTCCEEETTTCC-CCHHHHHHHHHCCHHHHHHHHHHTT
T ss_pred CeEEecCCeeEHHhh------------------hHHhcCCCCCCCeeeeccccC-cCHHHHHHHHhhCHHHHHHHHHHcC
Confidence 356778999999 89 999999999999999999999 9999999999999999876
Q ss_pred -------cccCCCCCCCCC
Q psy7092 392 -------AEFGPFNAGQFD 403 (540)
Q Consensus 392 -------~kY~~~~A~~yK 403 (540)
.||.+.+|..||
T Consensus 95 ~~~~~p~~KY~s~aA~~Yr 113 (163)
T 3sub_A 95 ISDFIPERKYRTKAADHYR 113 (163)
T ss_dssp CTTSCHHHHTTBHHHHHHH
T ss_pred CcccChhhcCCCHHHHHHH
Confidence 467777777777
No 22
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.70 E-value=3.2e-19 Score=164.17 Aligned_cols=67 Identities=51% Similarity=0.895 Sum_probs=58.2
Q ss_pred ccccCCCCcccc-cCCcccccccccCCCCCCccccccccCceeeeeeeecccCCCCCHHHHHHHHhcccccchh------
Q psy7092 319 KIQSKKPSGFVC-RCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMK------ 391 (540)
Q Consensus 319 ~~~~~~~~~f~c-rc~~~~~~~~~~~~~~~~~~sgIHR~LGVHISkVkS~~LDs~Wt~EQv~~Mq~gGN~~a~~------ 391 (540)
.+.+-++|.||| +| |||||+||||||||||++||++|+++||+.|+.+||.+++.
T Consensus 49 ~WaS~n~GvfiC~~C------------------sgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~an~~~e~~g 110 (144)
T 2p57_A 49 SWASITYGVFLCIDC------------------SGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANATAFFRQHG 110 (144)
T ss_dssp CEEEGGGTEEECHHH------------------HHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHHHHHHHHHTT
T ss_pred CeEEeccCEEEhhhc------------------hHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHHHHHHHHHcC
Confidence 355778899999 89 99999999999999999999669999999999999999887
Q ss_pred -------cccCCCCCCCCC
Q psy7092 392 -------AEFGPFNAGQFD 403 (540)
Q Consensus 392 -------~kY~~~~A~~yK 403 (540)
.||++.+|..||
T Consensus 111 ~~~~~~~~KY~s~aA~~Yr 129 (144)
T 2p57_A 111 CTANDANTKYNSRAAQMYR 129 (144)
T ss_dssp CCCCSHHHHHTSHHHHHHH
T ss_pred CCCCchhhccCcHHHHHHH
Confidence 456666666555
No 23
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.68 E-value=2.3e-18 Score=176.68 Aligned_cols=92 Identities=27% Similarity=0.382 Sum_probs=73.6
Q ss_pred ccccCCCCcccc-cCCcccccccccCCCCCCccccccccCceeeeeeeecccCCCCCHHHHHHHHhcccccchhcccCCC
Q psy7092 319 KIQSKKPSGFVC-RCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPF 397 (540)
Q Consensus 319 ~~~~~~~~~f~c-rc~~~~~~~~~~~~~~~~~~sgIHR~LGVHISkVkS~~LDs~Wt~EQv~~Mq~gGN~~a~~~kY~~~ 397 (540)
.|.+-++|.|+| +| |||||+|||||||||||+||+ |+++||+.|+.+||..+|.. |+..
T Consensus 57 ~w~s~~~g~~~c~~c------------------~~~hr~lg~~~s~v~s~~~d~-w~~~~~~~~~~~gn~~~n~~-~e~~ 116 (368)
T 3jue_A 57 EWASINLGVTLCIQC------------------SGIHRSLGVHFSKVRSLTLDS-WEPELVKLMCELGNVIINQI-YEAR 116 (368)
T ss_dssp CEEETTTTEEECHHH------------------HHHHHHHCTTTCCEEETTTSC-CCHHHHHHHHHSCHHHHHHH-HTTT
T ss_pred CeEEecCCeEEcHhH------------------HHHHhccCCCcCeeEEeeccc-ccHHHHHHHHHHccHHHHHH-HHhh
Confidence 366779999999 89 999999999999999999999 99999999999999999987 7766
Q ss_pred CCCC-CCCCCCCCCCCCCCCCCCCCcccccccccCCCCCcccCC
Q psy7092 398 NAGQ-FDSPPPDCTHTLPLAFTPSGMGFASMSRSGGLGGKKLGK 440 (540)
Q Consensus 398 ~A~~-yK~~~P~s~~~lp~~~~~s~~~~~~fir~~~~~~k~~~~ 440 (540)
+... .+++.|++... ..+.|||.||+.++|+.+
T Consensus 117 ~~~~~~~kp~~~~~~~----------~re~fIr~KY~~k~f~~~ 150 (368)
T 3jue_A 117 VEAMAVKKPGPSCSRQ----------EKEAWIHAKYVEKKFLTK 150 (368)
T ss_dssp TTTTTCCCCCTTSCHH----------HHHHHHHHHHTSCTTCCS
T ss_pred cccccCcCCCCCCCHH----------HHHHHHHHHHHhhccccc
Confidence 6542 34555543322 356688888887777644
No 24
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=99.61 E-value=4.5e-17 Score=169.01 Aligned_cols=90 Identities=23% Similarity=0.313 Sum_probs=69.9
Q ss_pred ccccCCCCcccc-cCCcccccccccCCCCCCccccccccCceeeeeeeecccCCCCCHHHHHHHHhcccccchhcccCCC
Q psy7092 319 KIQSKKPSGFVC-RCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPF 397 (540)
Q Consensus 319 ~~~~~~~~~f~c-rc~~~~~~~~~~~~~~~~~~sgIHR~LGVHISkVkS~~LDs~Wt~EQv~~Mq~gGN~~a~~~kY~~~ 397 (540)
.+.+-++|.|+| +| |||||+| ||||+||||+||+ |+++||+.|+.+||..+|.. |+..
T Consensus 46 ~w~s~~~g~~~C~~C------------------sg~hr~l-~his~v~s~~ld~-w~~~~~~~~~~~gN~~~~~~-~e~~ 104 (386)
T 3lju_X 46 DWASYTLGVFICLSC------------------SGIHRNI-PQVSKVKSVRLDA-WEEAQVEFMASHGNDAARAR-FESK 104 (386)
T ss_dssp CEEETTTTEEECHHH------------------HHHHHTC-TTTCCEEETTTSC-CCHHHHHHHHHSSHHHHHHH-HTTT
T ss_pred CeEEecccEEEhhhh------------------chHhhCC-CccceeeeecccC-CCHHHHHHHHHhcchHHHHH-Hhcc
Confidence 355778999999 89 9999999 9999999999999 99999999999999999988 6665
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCcccccccccCCCCCcccC
Q psy7092 398 NAGQFDSPPPDCTHTLPLAFTPSGMGFASMSRSGGLGGKKLG 439 (540)
Q Consensus 398 ~A~~yK~~~P~s~~~lp~~~~~s~~~~~~fir~~~~~~k~~~ 439 (540)
++..+.+|.|+... ...+.|||.||+.+++++
T Consensus 105 ~~~~~~~p~~~~~~----------~~~e~fIr~KY~~~~f~~ 136 (386)
T 3lju_X 105 VPSFYYRPTPSDCQ----------LLREQWIRAKYERQEFIY 136 (386)
T ss_dssp CCTTSCCCCTTSCH----------HHHHHHHHHHHTSCTTTS
T ss_pred CCccCCCCCCccch----------HHHHHEHHhhhCCCEEEC
Confidence 55444443333222 224557777777666653
No 25
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.42 E-value=1.2e-14 Score=146.35 Aligned_cols=54 Identities=44% Similarity=0.799 Sum_probs=51.2
Q ss_pred ccccCCCCcccc-cCCcccccccccCCCCCCccccccccCceeeeeeeecccCCCCCHHHHHHHHhcccccchh
Q psy7092 319 KIQSKKPSGFVC-RCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMK 391 (540)
Q Consensus 319 ~~~~~~~~~f~c-rc~~~~~~~~~~~~~~~~~~sgIHR~LGVHISkVkS~~LDs~Wt~EQv~~Mq~gGN~~a~~ 391 (540)
.|.+-++|.|+| +| |||||+||||||+||||+||+ |+++||+.|+.+||.+++.
T Consensus 49 ~~~~~~~~~~~c~~c------------------~~~hr~~~~~~s~v~s~~~~~-~~~~~~~~~~~~gN~~~n~ 103 (329)
T 3o47_A 49 QWVSVTYGIWICLEC------------------SGRHRGLGVHLSFVRSVTMDK-WKDIELEKMKAGGNAKFRE 103 (329)
T ss_dssp CEEEGGGTEEECHHH------------------HHHHHHHCTTTCCEEESSSCC-CCHHHHHHHHHCCHHHHHH
T ss_pred CeEEecCCEEEChhh------------------hhhhcccCCCcCEEeeccccC-CCHHHHHHHHHhCcHHHHH
Confidence 477889999999 89 999999999999999999999 9999999999999999877
No 26
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.38 E-value=7.4e-15 Score=143.23 Aligned_cols=92 Identities=22% Similarity=0.219 Sum_probs=70.3
Q ss_pred ccccCCCCcccc-cCCcccccccccCCCCCCccccccccCceeeeeeeecccCCCCCHHHHHHHHhcccccchhcccCCC
Q psy7092 319 KIQSKKPSGFVC-RCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPF 397 (540)
Q Consensus 319 ~~~~~~~~~f~c-rc~~~~~~~~~~~~~~~~~~sgIHR~LGVHISkVkS~~LDs~Wt~EQv~~Mq~gGN~~a~~~kY~~~ 397 (540)
++.+-++|.|+| +| |||||+||||||+|||++||+ |+++|+..|+.+||..++.. |+..
T Consensus 29 ~w~s~~~g~~~c~~c------------------~~~hr~lg~~is~v~s~~~d~-~~~~~l~~~~~~GN~~~n~i-~e~~ 88 (278)
T 1dcq_A 29 TWLSTNLGILTCIEC------------------SGIHRELGVHYSRMQSLTLDV-LGTSELLLAKNIGNAGFNEI-MECC 88 (278)
T ss_dssp CEEETTTTEEECHHH------------------HHHHHHHCTTTCCEEETTTSC-CCGGGGHHHHHSCHHHHHHH-HTTT
T ss_pred CeEEecCCeEEcHHH------------------HHHHhhcCCCcceeeeeecCC-CCHHHHHHHHHcCcHHHHHH-HHhh
Confidence 566788999999 89 999999999999999999999 99999999999999999987 5544
Q ss_pred CCCCCC-CCCCCCCCCCCCCCCCCCcccccccccCCCCCcccCC
Q psy7092 398 NAGQFD-SPPPDCTHTLPLAFTPSGMGFASMSRSGGLGGKKLGK 440 (540)
Q Consensus 398 ~A~~yK-~~~P~s~~~lp~~~~~s~~~~~~fir~~~~~~k~~~~ 440 (540)
+...+. +|.|.+ .....+.||+.+|+.+++..+
T Consensus 89 l~~~~~~kP~~~s----------~~~~~~~fI~aKYl~~~f~~~ 122 (278)
T 1dcq_A 89 LPSEDPVKPNPGS----------DMIARKDYITAKYMERRYARK 122 (278)
T ss_dssp CCSSSCCSCCTTC----------CHHHHHHHHHHHHTTCTTSCC
T ss_pred CChhhcCCCCCCC----------CHHHHHHHHHHHHHHhhcccc
Confidence 432221 111111 112345688888887777644
No 27
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.37 E-value=1.6e-14 Score=142.57 Aligned_cols=91 Identities=19% Similarity=0.133 Sum_probs=69.5
Q ss_pred ccccCCCCcccc-cCCcccccccccCCCCCCccccccccCceeeeeeeecccCCCCCHHHHHHHHhcccccchhcccCCC
Q psy7092 319 KIQSKKPSGFVC-RCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPF 397 (540)
Q Consensus 319 ~~~~~~~~~f~c-rc~~~~~~~~~~~~~~~~~~sgIHR~LGVHISkVkS~~LDs~Wt~EQv~~Mq~gGN~~a~~~kY~~~ 397 (540)
.|.+-++|.|+| +| |||||+||||||||||++||. |++++|..|+.+||..++.. |+..
T Consensus 54 ~w~s~~~g~~~c~~c------------------s~~hr~lg~~is~v~sl~lD~-w~~~~l~~~~~~GN~~~n~i-~E~~ 113 (301)
T 2b0o_E 54 TWLSTNLGVLTCIQC------------------SGVHRELGVRFSRMQSLTLDL-LGPSELLLALNMGNTSFNEV-MEAQ 113 (301)
T ss_dssp CEEETTTTEEECHHH------------------HHHHHHHCTTTCCEEETTTSC-CCHHHHHHHHHCCHHHHHHH-HTTT
T ss_pred CeEEeecCeEEcHHH------------------HHHHHhhCCCcccccccCcCC-CCHHHHHHHHHcCCHHHHHH-HHHh
Confidence 356778999999 89 999999999999999999999 99999999999999988887 5555
Q ss_pred CCCC-CCCCCCCCCCCCCCCCCCCCcccccccccCCCCCcccC
Q psy7092 398 NAGQ-FDSPPPDCTHTLPLAFTPSGMGFASMSRSGGLGGKKLG 439 (540)
Q Consensus 398 ~A~~-yK~~~P~s~~~lp~~~~~s~~~~~~fir~~~~~~k~~~ 439 (540)
+... +.+|.|.+ .......||+.+|+.+++..
T Consensus 114 l~~~~~~kP~~~s----------~~~~r~~~I~~Ky~~~~f~~ 146 (301)
T 2b0o_E 114 LPSHGGPKPSAES----------DMGTRRDYIMAKYVEHRFAR 146 (301)
T ss_dssp CCSSSCSCCCTTC----------CHHHHHHHHHHHHTSCTTSC
T ss_pred hhhccCCCCCCcc----------cHHHHHHHHHHHHHhhhhhc
Confidence 4432 22222221 11245668888888766653
No 28
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.36 E-value=1.7e-14 Score=150.95 Aligned_cols=91 Identities=19% Similarity=0.144 Sum_probs=69.3
Q ss_pred cccCCCCcccc-cCCcccccccccCCCCCCccccccccCceeeeeeeecccCCCCCHHHHHHHHhcccccchhcccCCCC
Q psy7092 320 IQSKKPSGFVC-RCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPFN 398 (540)
Q Consensus 320 ~~~~~~~~f~c-rc~~~~~~~~~~~~~~~~~~sgIHR~LGVHISkVkS~~LDs~Wt~EQv~~Mq~gGN~~a~~~kY~~~~ 398 (540)
|.+-|+|.|+| +| |||||+||||||+|||++||. |+++++..|+.+||..+|.. |+..+
T Consensus 36 w~s~~~~~~~c~~c------------------~~~hr~lg~~~s~vrsl~ld~-w~~~~~~l~~~~GN~~an~i-~E~~l 95 (497)
T 3lvq_E 36 WLSTNLGVLTCIQC------------------SGVHRELGVRFSRMQSLTLDL-LGPSELLLALNMGNTSFNEV-MEAQL 95 (497)
T ss_dssp EEETTTTEEECHHH------------------HHHHHHHCTTTCCEEETTTSC-CCGGGGTTTTTCCHHHHHHH-HTTTC
T ss_pred EEEechhHHhHHhh------------------HHHHHhhccccceecccccCC-CCHHHHHHHHHHhhHHHHHH-HHhhc
Confidence 56778999999 89 999999999999999999999 99999999999999999988 54443
Q ss_pred CCCC-CCCCCCCCCCCCCCCCCCCcccccccccCCCCCcccCC
Q psy7092 399 AGQF-DSPPPDCTHTLPLAFTPSGMGFASMSRSGGLGGKKLGK 440 (540)
Q Consensus 399 A~~y-K~~~P~s~~~lp~~~~~s~~~~~~fir~~~~~~k~~~~ 440 (540)
...+ .++.|. ......+.||+.+|..+++..+
T Consensus 96 p~~~~~kP~~~----------s~~~~re~fIraky~~~~f~~~ 128 (497)
T 3lvq_E 96 PSHGGPKPSAE----------SDMGTRRDYIMAKYVEHRFARR 128 (497)
T ss_dssp CSSSCSCCCTT----------CCHHHHHHHHHHHHTTCTTSCC
T ss_pred ccccCCCCCCc----------CcHHHHHHHHHHHhhccccccc
Confidence 3211 111111 1123455689988888777644
No 29
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=73.68 E-value=1.7 Score=32.79 Aligned_cols=38 Identities=29% Similarity=0.739 Sum_probs=32.0
Q ss_pred CCCcccCCCCC-CCCceEecccceEcccchhhhccCCCc
Q psy7092 38 FPQECFDCNAK-NPTWSSVTYGVFICIDCSAVHRGLGVH 75 (540)
Q Consensus 38 ~Nk~CaDCga~-nP~WaSv~~GVflC~~CSgvHR~LGvh 75 (540)
..+.|++|+.. -|.|-.-..|..||-.|.-.++..|++
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQN 41 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCSC
T ss_pred CCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCCC
Confidence 56789999995 679999999999999998877776653
No 30
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=64.79 E-value=2.9 Score=31.06 Aligned_cols=35 Identities=26% Similarity=0.624 Sum_probs=29.0
Q ss_pred CcccCCCCC-CCCceEecccceEcccchhhhccCCC
Q psy7092 40 QECFDCNAK-NPTWSSVTYGVFICIDCSAVHRGLGV 74 (540)
Q Consensus 40 k~CaDCga~-nP~WaSv~~GVflC~~CSgvHR~LGv 74 (540)
+.|++|+.. -|.|-.-..|-.||-.|.-..+.-|+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 579999996 67999999999999999876665544
No 31
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=60.33 E-value=3.7 Score=39.29 Aligned_cols=46 Identities=20% Similarity=0.413 Sum_probs=34.9
Q ss_pred cCCCcccCCCCCCCCceEecccceEcccchhhhccCCCcccceeeccCCCCCCHHHHHHHHhc
Q psy7092 37 FFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLG 99 (540)
Q Consensus 37 p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~LGvhiS~VKSl~lDs~Wt~~qL~~m~~g 99 (540)
|.-..|+.||.+...|.|...|.++|..|...+ . .+.+.+..|+..
T Consensus 148 p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~-l~~~~l~~l~~l 193 (244)
T 1u5k_A 148 PQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------P-YPPAVLDFLRHA 193 (244)
T ss_dssp CCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------C-CCHHHHHHHHHT
T ss_pred CCcCccccCCCCCCCcEecccCEEECcccCCCC----------------C-CCHHHHHHHHHH
Confidence 455789999998667889999999999995421 2 567777777653
No 32
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=59.90 E-value=2.9 Score=33.55 Aligned_cols=38 Identities=16% Similarity=0.406 Sum_probs=31.9
Q ss_pred cCCCcccCCCCC-CCCceEecccceEcccchhhhccCCC
Q psy7092 37 FFPQECFDCNAK-NPTWSSVTYGVFICIDCSAVHRGLGV 74 (540)
Q Consensus 37 p~Nk~CaDCga~-nP~WaSv~~GVflC~~CSgvHR~LGv 74 (540)
.....|++|+.. -|.|-.-..|-.||-.|.-..+..|+
T Consensus 5 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 5 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 467899999995 67999999999999999877766554
No 33
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=56.72 E-value=5.2 Score=32.26 Aligned_cols=38 Identities=26% Similarity=0.569 Sum_probs=31.7
Q ss_pred cCCCcccCCCCC-CCCceEecccceEcccchhhhccCCC
Q psy7092 37 FFPQECFDCNAK-NPTWSSVTYGVFICIDCSAVHRGLGV 74 (540)
Q Consensus 37 p~Nk~CaDCga~-nP~WaSv~~GVflC~~CSgvHR~LGv 74 (540)
.....|+.|+.. -|.|-.-..|-.||-.|.-..+..|+
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 467899999985 68999999999999999876666554
No 34
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=51.29 E-value=6 Score=34.90 Aligned_cols=37 Identities=30% Similarity=0.769 Sum_probs=29.9
Q ss_pred CCcccCCCCC-CCCceEecccceEcccchhhhccCCCc
Q psy7092 39 PQECFDCNAK-NPTWSSVTYGVFICIDCSAVHRGLGVH 75 (540)
Q Consensus 39 Nk~CaDCga~-nP~WaSv~~GVflC~~CSgvHR~LGvh 75 (540)
-+.|++||+. -|.|-.-..|-+||-.|.-.++..|.+
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~n 42 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQN 42 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhcccc
Confidence 4789999985 789999999999999998766654443
No 35
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=41.84 E-value=9.9 Score=31.89 Aligned_cols=30 Identities=23% Similarity=0.662 Sum_probs=24.5
Q ss_pred CCCcccCCCCCCCCceEecccceEcccchhhhc
Q psy7092 38 FPQECFDCNAKNPTWSSVTYGVFICIDCSAVHR 70 (540)
Q Consensus 38 ~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR 70 (540)
|++.|.-||.... ...|||+.|..|.++.|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 4678999997653 56899999999999876
No 36
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=41.30 E-value=6 Score=32.40 Aligned_cols=37 Identities=19% Similarity=0.477 Sum_probs=29.0
Q ss_pred CCCcccCCCCC-CCCceE--ecccceEcccchhhhccCCCc
Q psy7092 38 FPQECFDCNAK-NPTWSS--VTYGVFICIDCSAVHRGLGVH 75 (540)
Q Consensus 38 ~Nk~CaDCga~-nP~WaS--v~~GVflC~~CSgvHR~LGvh 75 (540)
....|+.|+.. -|.|-. -.-| .||-.|.-.++..|++
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~~ 46 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNKT 46 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHSC
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCCC
Confidence 45789999995 679998 5677 8999998877776553
No 37
>2han_B Ecdysone receptor; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2 PDB: 1r0o_B 1r0n_B
Probab=35.98 E-value=15 Score=32.48 Aligned_cols=31 Identities=19% Similarity=0.583 Sum_probs=25.8
Q ss_pred CCCcccCCCCCCCCceEecccceEcccchhhhcc
Q psy7092 38 FPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 71 (540)
Q Consensus 38 ~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~ 71 (540)
....|.-||.... ...|||+.|..|+++.|-
T Consensus 7 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 37 (119)
T 2han_B 7 QEELCLVCGDRAS---GYHYNALTCEGCKGFFRR 37 (119)
T ss_dssp CSCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCcCeEeCCcCC---cceECchhHHhhHHhhhh
Confidence 5678999997643 679999999999998873
No 38
>1r4i_A Androgen receptor; AR, steroid receptor, protein-DNA complex, transcription/DNA complex; 3.10A {Rattus norvegicus} SCOP: g.39.1.2
Probab=34.66 E-value=14 Score=32.03 Aligned_cols=32 Identities=22% Similarity=0.573 Sum_probs=25.8
Q ss_pred cCCCcccCCCCCCCCceEecccceEcccchhhhcc
Q psy7092 37 FFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 71 (540)
Q Consensus 37 p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~ 71 (540)
+....|.-||.+. ....|||+.|..|+++.|-
T Consensus 5 ~~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 36 (105)
T 1r4i_A 5 PPQKTCLICGDEA---SGAHYGALTCGSCKVFFKR 36 (105)
T ss_dssp -CCCBCSSSCSBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCcEeCCCC---CceEeCCcchhhhhhhhce
Confidence 5678899999753 3679999999999998873
No 39
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=34.36 E-value=17 Score=30.25 Aligned_cols=31 Identities=32% Similarity=0.638 Sum_probs=25.5
Q ss_pred CCCcccCCCCCCCCceEecccceEcccchhhhcc
Q psy7092 38 FPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 71 (540)
Q Consensus 38 ~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~ 71 (540)
+...|.-||.+. ....|||+.|..|++..|-
T Consensus 3 ~~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (84)
T 1hcq_A 3 ETRYCAVCNDYA---SGYHYGVWSCEGCKAFFKR 33 (84)
T ss_dssp CCCBCTTTCSBC---CEEETTEEECHHHHHHHHH
T ss_pred CCCcCcEECCCC---CCeeeCccchHHhhhhhhh
Confidence 457899999764 3679999999999998873
No 40
>2han_A Protein ultraspiracle; transcription regulation, transcription factor, DNA-binding, nuclear protein, nuclear receptor, zinc finger; 1.95A {Drosophila melanogaster} SCOP: g.39.1.2
Probab=31.70 E-value=18 Score=30.65 Aligned_cols=31 Identities=23% Similarity=0.608 Sum_probs=25.1
Q ss_pred CCCcccCCCCCCCCceEecccceEcccchhhhcc
Q psy7092 38 FPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 71 (540)
Q Consensus 38 ~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~ 71 (540)
....|.-||.+.. ...|||+.|..|+++.|-
T Consensus 9 ~~~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 39 (93)
T 2han_A 9 SKHLCSICGDRAS---GKHYGVYSCEGCKGFFKR 39 (93)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHHH
T ss_pred CCCCCcEeCCCCc---CeecCcchhHHHHHHHHh
Confidence 4578999997643 679999999999998863
No 41
>2nll_B Protein (thyroid hormone receptor); complex (transcription regulation/DNA), DNA-binding, nuclear protein, zinc- finger, multigene family; HET: DNA 5IU; 1.90A {Homo sapiens} SCOP: g.39.1.2 PDB: 3m9e_A*
Probab=31.52 E-value=13 Score=32.01 Aligned_cols=29 Identities=24% Similarity=0.611 Sum_probs=23.7
Q ss_pred CcccCCCCCCCCceEecccceEcccchhhhcc
Q psy7092 40 QECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 71 (540)
Q Consensus 40 k~CaDCga~nP~WaSv~~GVflC~~CSgvHR~ 71 (540)
..|.-||.+.. ...|||+.|..|+++.|-
T Consensus 2 ~~C~VCgd~a~---g~hyGv~sC~aCk~FFRR 30 (103)
T 2nll_B 2 ELCVVCGDKAT---GYHYRCITCEGCKGFFRR 30 (103)
T ss_dssp CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCeEeCCcCc---CeecCcccHHHhhhhhee
Confidence 56889997543 568999999999998873
No 42
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=31.14 E-value=12 Score=32.95 Aligned_cols=31 Identities=16% Similarity=0.331 Sum_probs=23.8
Q ss_pred CCCcccCCCCCCC-CceEecccceEcccchhh
Q psy7092 38 FPQECFDCNAKNP-TWSSVTYGVFICIDCSAV 68 (540)
Q Consensus 38 ~Nk~CaDCga~nP-~WaSv~~GVflC~~CSgv 68 (540)
+...|.+||..-- .|..-+||+-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 5567999998633 334568999999999865
No 43
>2ebl_A COUP transcription factor 1; DNA-binding, metal-binding, nuclear protein, receptor, transcription regulation, zinc, EAR3, erbal3 tfcoup1; NMR {Homo sapiens}
Probab=28.93 E-value=18 Score=30.47 Aligned_cols=32 Identities=28% Similarity=0.628 Sum_probs=26.0
Q ss_pred cCCCcccCCCCCCCCceEecccceEcccchhhhcc
Q psy7092 37 FFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 71 (540)
Q Consensus 37 p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~ 71 (540)
+.+..|.-||.+.. ...|||+.|..|+++.|-
T Consensus 5 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 36 (89)
T 2ebl_A 5 SSGIECVVCGDKSS---GKHYGQFTCEGCKSFFKR 36 (89)
T ss_dssp CSSCBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCcEeCCCCc---ceEeCchhhHHhhhhhhe
Confidence 45678999997654 568999999999998873
No 44
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=28.15 E-value=20 Score=37.25 Aligned_cols=31 Identities=32% Similarity=0.723 Sum_probs=24.9
Q ss_pred cCCCcccCCCCCCCCceEecccceEcccchhhhc
Q psy7092 37 FFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHR 70 (540)
Q Consensus 37 p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR 70 (540)
..+..|.-||.+.-. ..|||+.|..|.++.|
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFR 78 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHc
Confidence 457789999987654 5899999999999876
No 45
>1cit_A NGFI-B, protein (orphan nuclear receptor NGFI-B); early immediate response gene product, transcription factor, monomeric protein-DNA complex; HET: DNA; 2.70A {Rattus norvegicus} SCOP: g.39.1.2
Probab=27.98 E-value=27 Score=29.34 Aligned_cols=28 Identities=25% Similarity=0.646 Sum_probs=22.8
Q ss_pred cccCCCCCCCCceEecccceEcccchhhhcc
Q psy7092 41 ECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 71 (540)
Q Consensus 41 ~CaDCga~nP~WaSv~~GVflC~~CSgvHR~ 71 (540)
.|.-||.+.. ...|||+.|..|+++.|-
T Consensus 2 ~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 29 (89)
T 1cit_A 2 RCAVCGDNAS---CQHYGVRTCEGCKGFFKR 29 (89)
T ss_dssp CCSSSCCCCC---EEETTEEECHHHHHHHHH
T ss_pred CCeEeCCCCc---ceEeCccchhhhhhhcee
Confidence 5888997543 579999999999998863
No 46
>2a66_A Orphan nuclear receptor NR5A2; protein-DNA complex, zinc finger, DNA- binding domain, transcription factor, FTZ-F1, C-terminal extension; 2.20A {Homo sapiens} PDB: 2ff0_A
Probab=27.32 E-value=20 Score=31.53 Aligned_cols=32 Identities=25% Similarity=0.575 Sum_probs=24.3
Q ss_pred cCCCcccCCCCCCCCceEecccceEcccchhhhcc
Q psy7092 37 FFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 71 (540)
Q Consensus 37 p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~ 71 (540)
+....|.-||.+. ....|||+.|..|+++.|-
T Consensus 7 ~~~~~C~VCgd~a---~G~HyGv~sC~aCk~FFRR 38 (113)
T 2a66_A 7 DLEELCPVCGDKV---SGYHYGLLTCESCKGFFKR 38 (113)
T ss_dssp ---CBCTTTCCBE---EEEETTEEEEHHHHHHHHH
T ss_pred CCCCCCcEeCCCC---cceeeCcccHHHHHHHHhh
Confidence 4567899999753 3679999999999998863
No 47
>1ynw_B Retinoic acid receptor RXR-alpha, retinoid X receptor; VDR, nuclear receptor, protein-DNA complex, transcripti complex; 3.00A {Homo sapiens} SCOP: g.39.1.2
Probab=27.18 E-value=18 Score=31.07 Aligned_cols=30 Identities=23% Similarity=0.679 Sum_probs=23.4
Q ss_pred CCcccCCCCCCCCceEecccceEcccchhhhcc
Q psy7092 39 PQECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 71 (540)
Q Consensus 39 Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~ 71 (540)
...|.-||.+.. ...|||+.|..|+++.|-
T Consensus 3 ~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 32 (99)
T 1ynw_B 3 KHICAICGDRSS---GKHYGVYSCEGCKGFFKR 32 (99)
T ss_dssp --CBTTTBSCCC---BCCTTSCBCSHHHHHHHH
T ss_pred CCCCceeCCCCc---ceeeCccchHHHHHHHHh
Confidence 357999997653 568999999999998873
No 48
>1kb2_A Vitamin D3 receptor; VDR, nuclear receptor, protein-DNA complex, transcription/DNA complex; 2.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1kb4_A 1kb6_A 1ynw_A
Probab=26.87 E-value=17 Score=31.74 Aligned_cols=31 Identities=19% Similarity=0.597 Sum_probs=24.3
Q ss_pred CCCcccCCCCCCCCceEecccceEcccchhhhcc
Q psy7092 38 FPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 71 (540)
Q Consensus 38 ~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~ 71 (540)
....|.-||.... ...|||+.|..|+++.|-
T Consensus 5 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 35 (110)
T 1kb2_A 5 VPRICGVCGDRAT---GFHFNAMTCEGCKGFFRR 35 (110)
T ss_dssp --CBCTTTCSBCC---SEETTEECCHHHHHHHHH
T ss_pred cCCCCcEeCCCCC---ceEeCchhHhhhhhhhee
Confidence 4467999997653 568999999999998873
No 49
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=26.79 E-value=47 Score=27.29 Aligned_cols=42 Identities=17% Similarity=0.181 Sum_probs=31.1
Q ss_pred chHHHHHHH-hcccCCCcccCCCCCCCCceEecccceEcccchhh
Q psy7092 25 KNSKLLMLQ-IITFFPQECFDCNAKNPTWSSVTYGVFICIDCSAV 68 (540)
Q Consensus 25 ~n~k~l~~l-~~~p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgv 68 (540)
..++.+.++ +.....-.|.-||...-.+.. .||..|..|--.
T Consensus 12 slRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~~ 54 (73)
T 1ffk_W 12 KIRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGYK 54 (73)
T ss_pred hHHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCcE
Confidence 456666666 446788899999987666554 599999999543
No 50
>1a6y_A Orphan nuclear receptor NR1D1; orphan receptor, DNA-binding, reverb, REV- ERB, transcription regulation, transcription/DNA complex; HET: DNA 5IU; 2.30A {Homo sapiens} SCOP: g.39.1.2 PDB: 1ga5_A* 1hlz_A
Probab=26.24 E-value=24 Score=29.96 Aligned_cols=30 Identities=27% Similarity=0.618 Sum_probs=23.8
Q ss_pred CCCcccCCCCCCCCceEecccceEcccchhhhc
Q psy7092 38 FPQECFDCNAKNPTWSSVTYGVFICIDCSAVHR 70 (540)
Q Consensus 38 ~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR 70 (540)
....|.-||.+.. ...|||+.|..|++..|
T Consensus 6 ~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFR 35 (94)
T 1a6y_A 6 MVLLCKVCGDVAS---GFHYGVLACEGCKGFFR 35 (94)
T ss_dssp --CBCTTTSSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCcEeCCCCc---ceEeCccchhhhhhehh
Confidence 3467999997553 67999999999999887
No 51
>1dsz_A RAR-alpha, retinoic acid receptor alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hra_A
Probab=26.23 E-value=19 Score=30.04 Aligned_cols=29 Identities=34% Similarity=0.815 Sum_probs=23.3
Q ss_pred CcccCCCCCCCCceEecccceEcccchhhhcc
Q psy7092 40 QECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 71 (540)
Q Consensus 40 k~CaDCga~nP~WaSv~~GVflC~~CSgvHR~ 71 (540)
..|.-||.+.. ...|||+.|..|++..|-
T Consensus 5 ~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 33 (86)
T 1dsz_A 5 KPCFVCQDKSS---GYHYGVSACEGCKGFFRR 33 (86)
T ss_dssp -CCTTTCSCCC---SEETTEECCHHHHHHHHH
T ss_pred CCCcEECCCcc---ceeeCchhHHHHHHHHHH
Confidence 46999997653 468999999999998873
No 52
>1lo1_A Steroid hormone receptor ERR2; estrogen related receptor 2, DNA binding domain, HERR2, hormone nuclear receptor; NMR {Homo sapiens} SCOP: g.39.1.2
Probab=26.17 E-value=16 Score=31.22 Aligned_cols=30 Identities=30% Similarity=0.634 Sum_probs=24.5
Q ss_pred CCcccCCCCCCCCceEecccceEcccchhhhcc
Q psy7092 39 PQECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 71 (540)
Q Consensus 39 Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~ 71 (540)
...|.-||.+. ....|||+.|..|+++.|-
T Consensus 4 ~~~C~VCg~~a---~g~hyGv~sC~aCk~FFRR 33 (98)
T 1lo1_A 4 KRLCLVCGDIA---SGYHYGVASCEACKAFFKR 33 (98)
T ss_dssp CCEETTTTEEC---SEESSSSEECHHHHHHHHH
T ss_pred CCCCcEeCCCC---cCeeeCccchhhhhhhhee
Confidence 46789999754 3679999999999998873
No 53
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1
Probab=24.81 E-value=24 Score=25.47 Aligned_cols=14 Identities=36% Similarity=1.023 Sum_probs=12.0
Q ss_pred CCcccccCCccccc
Q psy7092 325 PSGFVCRCPPFYQA 338 (540)
Q Consensus 325 ~~~f~crc~~~~~~ 338 (540)
+|+|.|.|++.|..
T Consensus 30 ~Gsy~C~C~~Gy~~ 43 (53)
T 1apq_A 30 VGGYFCSCRPGYEL 43 (53)
T ss_dssp TTEEEEECSTTCEE
T ss_pred CCCeEEECCCCCeE
Confidence 58999999998864
No 54
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=24.07 E-value=36 Score=29.90 Aligned_cols=39 Identities=15% Similarity=0.406 Sum_probs=32.2
Q ss_pred cCCCcccCCCCC-CCCceEecccceEcccchhhhccCCCc
Q psy7092 37 FFPQECFDCNAK-NPTWSSVTYGVFICIDCSAVHRGLGVH 75 (540)
Q Consensus 37 p~Nk~CaDCga~-nP~WaSv~~GVflC~~CSgvHR~LGvh 75 (540)
.....|++|+.. -|.|-.-..|-.||-.|.-..+..|++
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCC
Confidence 356789999995 689999999999999998776665553
No 55
>4hn5_A Glucocorticoid receptor; glucocorticoid receptor, steroid receptors, NGRE, repre transcription; HET: DNA; 1.90A {Homo sapiens} PDB: 4hn6_A*
Probab=22.28 E-value=31 Score=30.46 Aligned_cols=31 Identities=26% Similarity=0.703 Sum_probs=23.9
Q ss_pred cCCCcccCCCCCCCCceEecccceEcccchhhhc
Q psy7092 37 FFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHR 70 (540)
Q Consensus 37 p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR 70 (540)
...+.|.-||.+.- ...|||+.|..|+++.|
T Consensus 27 ~~~~~C~VCgd~a~---G~HyGv~sC~aCk~FFR 57 (117)
T 4hn5_A 27 APPKLCLVCSDEAS---GCHYGVLTCGSCKVFFK 57 (117)
T ss_dssp ---CBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCCcCCcCCCcCc---ccccCCcccchhhhhhh
Confidence 45678999998653 56899999999999876
No 56
>1dsz_B RXR-alpha, retinoic acid receptor RXR-alpha; RAR, nuclear receptor, protein-DNA, transcription/DNA complex; HET: DNA; 1.70A {Homo sapiens} SCOP: g.39.1.2 PDB: 1by4_A* 1rxr_A 1r0n_A 1r0o_A 2nll_A*
Probab=21.53 E-value=18 Score=30.18 Aligned_cols=32 Identities=25% Similarity=0.687 Sum_probs=25.4
Q ss_pred cCCCcccCCCCCCCCceEecccceEcccchhhhcc
Q psy7092 37 FFPQECFDCNAKNPTWSSVTYGVFICIDCSAVHRG 71 (540)
Q Consensus 37 p~Nk~CaDCga~nP~WaSv~~GVflC~~CSgvHR~ 71 (540)
..+..|.-||.+.. ...|||+.|..|++..|-
T Consensus 3 ~~~~~C~VCg~~a~---g~hyGv~sC~aCk~FFRR 34 (85)
T 1dsz_B 3 FTKHICAICGDRSS---GKHYGVYSCEGCKGFFKR 34 (85)
T ss_dssp SCCEECTTTCCEES---SEETTEECCHHHHHHHHH
T ss_pred CCCCCCCEeCCCCC---ceeeCccchHHHHHHHHH
Confidence 34567999997543 468999999999998873
No 57
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...
Probab=21.27 E-value=24 Score=26.32 Aligned_cols=14 Identities=29% Similarity=0.672 Sum_probs=12.1
Q ss_pred CCcccccCCccccc
Q psy7092 325 PSGFVCRCPPFYQA 338 (540)
Q Consensus 325 ~~~f~crc~~~~~~ 338 (540)
+|+|.|.|++.|+.
T Consensus 19 ~Gsy~C~C~~Gy~L 32 (55)
T 2jkh_L 19 QNSVVCSCARGYTL 32 (55)
T ss_dssp TTEEEEECCTTEEE
T ss_pred CCCeEEeCCCCCEE
Confidence 68999999999973
No 58
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=20.61 E-value=59 Score=29.85 Aligned_cols=33 Identities=24% Similarity=0.582 Sum_probs=26.7
Q ss_pred CCCcccCCCCC-----CCCceEecccceEcccchhhhc
Q psy7092 38 FPQECFDCNAK-----NPTWSSVTYGVFICIDCSAVHR 70 (540)
Q Consensus 38 ~Nk~CaDCga~-----nP~WaSv~~GVflC~~CSgvHR 70 (540)
+...|+-|+.+ ++.-.+......||..|...++
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~~~~ 104 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHAHP 104 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEECCS
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccccccC
Confidence 57889999996 6666777888999999986655
No 59
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=20.35 E-value=29 Score=23.67 Aligned_cols=13 Identities=23% Similarity=0.736 Sum_probs=10.9
Q ss_pred CCcccccCCcccc
Q psy7092 325 PSGFVCRCPPFYQ 337 (540)
Q Consensus 325 ~~~f~crc~~~~~ 337 (540)
.++|.|.||+.|.
T Consensus 21 ~~~~~C~C~~G~~ 33 (39)
T 1edm_B 21 INSYECWCPFGFE 33 (39)
T ss_dssp TTEEEEECCTTCC
T ss_pred CCceEeECCCCCc
Confidence 4789999998885
Done!