RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7092
(540 letters)
>gnl|CDD|216485 pfam01412, ArfGap, Putative GTPase activating protein for Arf.
Putative zinc fingers with GTPase activating proteins
(GAPs) towards the small GTPase, Arf. The GAP of ARD1
stimulates GTPase hydrolysis for ARD1 but not ARFs.
Length = 117
Score = 122 bits (308), Expect = 2e-33
Identities = 38/63 (60%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 42 CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 101
C DC A NPTW+S+ G+FICI CS VHR LGVH+S VRS LD WT QL M+ GGN
Sbjct: 16 CADCGAPNPTWASLNLGIFICIRCSGVHRSLGVHISKVRSLTLDK-WTPEQLEFMKAGGN 74
Query: 102 ANA 104
A
Sbjct: 75 KRA 77
Score = 63.4 bits (155), Expect = 2e-12
Identities = 27/59 (45%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 352 AVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPFNAGQFDSPPPDCT 410
VHR LGVH+S VRS LD WT QL M+ GGN A EF + A PP +
Sbjct: 41 GVHRSLGVHISKVRSLTLDK-WTPEQLEFMKAGGNKRAN--EF--WEANLPPPKPPPSS 94
>gnl|CDD|214518 smart00105, ArfGap, Putative GTP-ase activating proteins for the
small GTPase, ARF. Putative zinc fingers with GTPase
activating proteins (GAPs) towards the small GTPase,
Arf. The GAP of ARD1 stimulates GTPase hydrolysis for
ARD1 but not ARFs.
Length = 119
Score = 119 bits (301), Expect = 3e-32
Identities = 54/140 (38%), Positives = 63/140 (45%), Gaps = 41/140 (29%)
Query: 41 ECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGG 100
+CFDC A NPTW+SV GVF+CI+CS +HR LGVH+S VRS LD WT +LR +Q GG
Sbjct: 12 KCFDCGAPNPTWASVNLGVFLCIECSGIHRSLGVHISKVRSLTLD-TWTEEELRLLQKGG 70
Query: 101 NANAPNGQNTRLSLWRSWGSFPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHNCT 160
N NA S+W S
Sbjct: 71 NENAN-------SIWESNLDDFSLKPPD-------------------------------- 91
Query: 161 SKDAQQKYNSRAAQLYREKL 180
D QQKY S A Y EKL
Sbjct: 92 -DDDQQKYESFIAAKYEEKL 110
Score = 60.8 bits (148), Expect = 2e-11
Identities = 22/38 (57%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 352 AVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANA 389
+HR LGVH+S VRS LD WT +LR +Q GGN NA
Sbjct: 38 GIHRSLGVHISKVRSLTLD-TWTEEELRLLQKGGNENA 74
>gnl|CDD|227651 COG5347, COG5347, GTPase-activating protein that regulates ARFs
(ADP-ribosylation factors), involved in ARF-mediated
vesicular transport [Intracellular trafficking and
secretion].
Length = 319
Score = 109 bits (275), Expect = 1e-26
Identities = 40/65 (61%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 42 CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 101
C DC A NPTW+SV GVF+CIDC+ VHR LGVH+S V+S LD NWT +LR+M++GGN
Sbjct: 23 CADCGAPNPTWASVNLGVFLCIDCAGVHRSLGVHISKVKSLTLD-NWTEEELRRMEVGGN 81
Query: 102 ANAPN 106
+NA
Sbjct: 82 SNANR 86
Score = 54.4 bits (131), Expect = 6e-08
Identities = 23/38 (60%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 352 AVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANA 389
VHR LGVH+S V+S LD NWT +LR+M++GGN+NA
Sbjct: 48 GVHRSLGVHISKVKSLTLD-NWTEEELRRMEVGGNSNA 84
>gnl|CDD|178661 PLN03114, PLN03114, ADP-ribosylation factor GTPase-activating
protein AGD10; Provisional.
Length = 395
Score = 101 bits (252), Expect = 3e-23
Identities = 46/63 (73%), Positives = 53/63 (84%), Gaps = 1/63 (1%)
Query: 42 CFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGN 101
CFDCNAKNPTW+SVTYG+F+CIDCSAVHR LGVH+SFVRST LD+ W+ QL+ M GGN
Sbjct: 25 CFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDS-WSSEQLKMMIYGGN 83
Query: 102 ANA 104
A
Sbjct: 84 NRA 86
Score = 46.8 bits (110), Expect = 2e-05
Identities = 24/38 (63%), Positives = 28/38 (73%), Gaps = 1/38 (2%)
Query: 352 AVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANA 389
AVHR LGVH+SFVRST LD+ W+ QL+ M GGN A
Sbjct: 50 AVHRSLGVHISFVRSTNLDS-WSSEQLKMMIYGGNNRA 86
>gnl|CDD|178666 PLN03119, PLN03119, putative ADP-ribosylation factor
GTPase-activating protein AGD14; Provisional.
Length = 648
Score = 36.4 bits (83), Expect = 0.044
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 40 QECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLG 99
+ C +CN+ P + T+ F+C+ CS +HR + V ++ +T ++ +Q G
Sbjct: 24 RRCINCNSLGPQYVCTTFWTFVCMACSGIHREFTHRVKSVSMSK----FTSKEVEVLQNG 79
Query: 100 GNANA 104
GN A
Sbjct: 80 GNQRA 84
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 35.0 bits (81), Expect = 0.11
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 453 AELEKE--AELADSLK-MQSATSKPQSVADVERENEDSIENISLRLAYQDISKQQKQEEE 509
EL +E AEL K ++ K + + RE E ++ S + +++++Q K+ EE
Sbjct: 451 KELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEE 510
Query: 510 KLKAYNPKKAEQIER 524
KLK YN ++ E+
Sbjct: 511 KLKKYNLEELEKKAE 525
>gnl|CDD|220640 pfam10234, Cluap1, Clusterin-associated protein-1. This protein is
conserved from worms to humans. The protein of 413 amino
acids contains a central coiled-coil domain, possibly
the region that binds to clusterin. Cluap1 expression is
highest in the nucleus and gradually increases during
late S to G2/M phases of the cell cycle and returns to
the basal level in the G0/G1 phases. In addition, it is
upregulated in colon cancer tissues compared to
corresponding non-cancerous mucosa. It thus plays a
crucial role in the life of the cell.
Length = 269
Score = 33.8 bits (78), Expect = 0.16
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 11/75 (14%)
Query: 455 LEKEAELADSLKMQSATSKPQSVADVERENEDSIENISLRL-AYQD----ISKQQKQEEE 509
L KE +L +S Q A S+P +A+VE+ +++I+N++ RL Q + + E
Sbjct: 142 LGKELDLRES--RQKALSRPLELAEVEKALKEAIKNLAARLQQLQAELDNLKSDEANLEA 199
Query: 510 KLKAYNPKKAEQIER 524
K++ +K +++ER
Sbjct: 200 KIE----RKKQELER 210
>gnl|CDD|178677 PLN03131, PLN03131, hypothetical protein; Provisional.
Length = 705
Score = 34.4 bits (78), Expect = 0.19
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 40 QECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLG 99
+ C +CN+ P + + FIC+ CS +HR V+S + + +T + +Q G
Sbjct: 24 RRCINCNSLGPQFVCTNFWTFICMTCSGIHREF---THRVKSVSM-SKFTSQDVEALQNG 79
Query: 100 GNANA 104
GN A
Sbjct: 80 GNQRA 84
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 33.0 bits (76), Expect = 0.29
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 9/51 (17%)
Query: 483 ENEDSIENISLRLAYQDISKQQKQEEEKLKAYNPKKAEQIERLGMYNNNNN 533
ENE EN+ L L Y+ +SK++K+E KK E +E++G+
Sbjct: 89 ENETVEENLDLGLKYKKLSKKEKRE---------KKKEALEKVGLNLKLKQ 130
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 30.3 bits (69), Expect = 1.3
Identities = 16/78 (20%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
Query: 446 QKVKANFAELEKEA-ELADSLKMQSATSKPQSVADVERENEDSIENISLRLAYQDISKQQ 504
+ + E ++A E+ + K ++ + A+ E E E E A +I ++
Sbjct: 61 AEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAEEELERIKEA-----AEAEIEAEK 115
Query: 505 KQEEEKLKAYNPKKAEQI 522
++ E+L+A + A I
Sbjct: 116 ERALEELRAEVAELAVAI 133
>gnl|CDD|146371 pfam03700, Sorting_nexin, Sorting nexin, N-terminal domain. These
proteins bins to the cytoplasmic domain of plasma
membrane receptors. and are involved in endocytic
protein trafficking. The N-terminal domain appears to be
specific to sorting nexins 1 and 2.
Length = 127
Score = 29.9 bits (67), Expect = 1.5
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 201 HDATHKKGEEEPVDFFAEHTNGDNFGFDAPA-HPIITPTPTPTITASGSTSLAHPQ 255
+++ D FAE T D+P PI++ P+P IT TSL P+
Sbjct: 58 PKTEQVLLDDDREDLFAEAT--VEVSLDSPERKPILSSEPSPAITPVTPTSLIQPR 111
>gnl|CDD|227193 COG4856, COG4856, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 403
Score = 30.9 bits (70), Expect = 2.0
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 4/69 (5%)
Query: 456 EKEAELADSLKMQSATSKPQSVADV-ERENEDSIENISLRLAYQDISKQQKQEEEKLKAY 514
++ L D + + S T +V V ++ D++ I + D+SK K + +K
Sbjct: 239 KRTGSLPDGVSISSITPSKNTVTIVGSQDVLDNLSEIDAPV---DLSKISKDTTKTVKLP 295
Query: 515 NPKKAEQIE 523
P+ + +
Sbjct: 296 VPEGVKSVS 304
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 30.6 bits (70), Expect = 2.4
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 21/69 (30%)
Query: 454 ELEKEAELADSLKMQSATSKPQSVADVERENEDSIENISLRLAYQDISKQQKQEEEKLKA 513
ELE++AE A++L + E+ L+ ++ ++ ++EE+KL
Sbjct: 531 ELEQKAEEAEALLKE-----------AEK----------LKEELEEKKEKLQEEEDKLLE 569
Query: 514 YNPKKAEQI 522
K+A+Q
Sbjct: 570 EAEKEAQQA 578
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 30.5 bits (69), Expect = 2.5
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 483 ENEDSIENISLRLAYQDISKQQKQEEEKLKAYNPKKAEQI 522
+N + NISL+ Y + K ++ NPK ++I
Sbjct: 355 DNAEKAFNISLK-TYHKLRKALGDKDLLDNPKNPKDLDEI 393
>gnl|CDD|239384 cd03110, Fer4_NifH_child, This protein family's function is unkown.
It contains nucleotide binding site. It uses NTP as
energy source to transfer electron or ion.
Length = 179
Score = 29.5 bits (67), Expect = 2.8
Identities = 13/25 (52%), Positives = 13/25 (52%)
Query: 439 GKGGLGAQKVKANFAELEKEAELAD 463
GKGG G V A A L K LAD
Sbjct: 7 GKGGTGKTTVTAALAALLKNVVLAD 31
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 29.8 bits (66), Expect = 3.8
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 237 PTPTPTITASGSTSLAHPQNNNENTGAPSVEKAFSEAKPSNLGVKKIQSKKPSGPQNNNE 296
P P+ A+ + + + NN NT PS + ++ + G NNN
Sbjct: 306 PAPSTNTNANKTNTNTNTNTNNTNTSTPSKN---TNTNTNSNTNTNSNTNANQGSSNNNS 362
Query: 297 NTGAPSV 303
N+ A ++
Sbjct: 363 NSSASAI 369
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 30.1 bits (67), Expect = 3.8
Identities = 18/79 (22%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 446 QKVKANFAELEKEAELADSLKMQSATSKPQSVADVERENEDSIENISLRLAYQDISKQQK 505
+KV+ + +E + A+ LK +K ++ + ++ ED + + A +D +++
Sbjct: 1633 KKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED--EKKA 1690
Query: 506 QEEEKLKAYNPKKAEQIER 524
E K +A KKAE++++
Sbjct: 1691 AEALKKEAEEAKKAEELKK 1709
Score = 29.0 bits (64), Expect = 8.5
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 446 QKVKANFAELEKEAEL-ADSL-KMQSATSKPQSVADVERENEDSIENISLRLAYQDISKQ 503
+K+KA A+ +EA++ A+ L K + K + + E E + E + I
Sbjct: 1605 KKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAA 1664
Query: 504 Q---KQEEEKLKAYNPKKAEQIER 524
+ K EE+K KA KKAE+ E+
Sbjct: 1665 EEAKKAEEDKKKAEEAKKAEEDEK 1688
Score = 29.0 bits (64), Expect = 9.4
Identities = 20/72 (27%), Positives = 34/72 (47%)
Query: 453 AELEKEAELADSLKMQSATSKPQSVADVERENEDSIENISLRLAYQDISKQQKQEEEKLK 512
AE K+AE + ++ A+ ER NE+ + R+A+ + + EE K
Sbjct: 1220 AEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARK 1279
Query: 513 AYNPKKAEQIER 524
A KKAE+ ++
Sbjct: 1280 ADELKKAEEKKK 1291
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 29.9 bits (68), Expect = 4.1
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 381 MQLGGNANAMKAEFGPFNAGQFDSPPPDCTHTLPLAFTPSGMGFASMS 428
+ L G+ KA FGP G + P P+ P G ++
Sbjct: 161 LSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRC-PFGIGGEECGDDALE 207
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 28.7 bits (65), Expect = 5.1
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 446 QKVKANFAELEKEAELADSLKMQSATSKPQSVADVERENEDSIENISLRLAYQDISKQQK 505
K+K +L+KE E ++ ++ + + E E+ E + + K+ K
Sbjct: 65 NKLKTRLEKLKKELEELKQ-RIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLK 123
Query: 506 QEEEKLKAYNPKKAEQIER 524
E EK + +P++ E+++
Sbjct: 124 AELEKYEKNDPERIEKLKE 142
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 29.4 bits (66), Expect = 5.8
Identities = 11/82 (13%), Positives = 22/82 (26%), Gaps = 3/82 (3%)
Query: 238 TPTPTITASGSTSLAHPQNNNENTGAPSVEKAFSEAKPSNLGVKKIQSKKPSGPQNNNEN 297
T T G TS+ ++ +F + K KK + +
Sbjct: 189 KETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKE---KKEKKEASESTVKEESE 245
Query: 298 TGAPSVEKAFSDAKPSNLGVKK 319
+ + D G+ +
Sbjct: 246 EESGKRDVILEDESAEPTGLDE 267
>gnl|CDD|177172 MTH00110, ND4, NADH dehydrogenase subunit 4; Provisional.
Length = 459
Score = 29.1 bits (66), Expect = 7.1
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 121 FPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQHN 158
PL + + +W+N Y IS + + NQ N
Sbjct: 12 IPLTWLSKNNMIWINTTTYSLLISLIS---LLLLNQPN 46
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 28.8 bits (64), Expect = 7.3
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 5/69 (7%)
Query: 457 KEAELADSLKMQSATSKPQSVADVERENEDSIENISLRLAYQDISKQQKQEEEKLKAYNP 516
E + + + KP+ A+ ER + E RL Q+ KQ + E EK
Sbjct: 77 GEQQRKKKEEQVAEELKPKQAAEQERLKQLEKE----RLKAQEQQKQAE-EAEKQAQLEQ 131
Query: 517 KKAEQIERL 525
K+ E+ R
Sbjct: 132 KQQEEQARK 140
>gnl|CDD|218778 pfam05852, DUF848, Gammaherpesvirus protein of unknown function
(DUF848). This family consists of several
uncharacterized proteins from the Gammaherpesvirinae.
Length = 146
Score = 28.0 bits (63), Expect = 7.3
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 482 RENEDSIENISLRLAYQDISKQQKQEEEKLKAYNPKKAEQIERL 525
E ++N + +I +++K E LK ++ KK E+ E L
Sbjct: 53 LRQERELKNK-VSSLETEIREKKK-ELSLLKKFDRKKVERAEAL 94
>gnl|CDD|224460 COG1543, COG1543, Uncharacterized conserved protein [Function
unknown].
Length = 504
Score = 28.9 bits (65), Expect = 7.9
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 6 TPPLCQMLAGQYLF-----HLEKVKNSKLLMLQIITF-FPQECFDCNAKNPTWSSVTYGV 59
TP L +MLA YL +LE +L + + P + + G
Sbjct: 61 TPVLMEMLADPYLQDRYLRYLEWKI--ELSEKEEKRYADQSLRELAEFYIPEFLNA-RGY 117
Query: 60 FICIDCSAVHR 70
+ D + +
Sbjct: 118 WEQYDGNLLEA 128
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 28.6 bits (64), Expect = 8.6
Identities = 17/77 (22%), Positives = 32/77 (41%)
Query: 445 AQKVKANFAELEKEAELADSLKMQSATSKPQSVADVERENEDSIENISLRLAYQDISKQQ 504
+ K AE ++ EL + A + + A E + E + A + +K +
Sbjct: 78 EEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAE 137
Query: 505 KQEEEKLKAYNPKKAEQ 521
+ E+K K K+AE+
Sbjct: 138 AEAEKKAKEEAKKQAEE 154
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 28.7 bits (65), Expect = 8.7
Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 13/83 (15%)
Query: 445 AQKVKANFAELEKE--AELADSLKMQSATSKPQSVADVERENEDSIENISLRLAYQDISK 502
+++ +++E AE + + Q + +++ NE+ IE +
Sbjct: 98 REQMDEIIERIQEEDEAEAQEKREKQKKLRE-----EIDEFNEERIERKEEEK------E 146
Query: 503 QQKQEEEKLKAYNPKKAEQIERL 525
++++EE K+ Y +KAE+ E
Sbjct: 147 REREEELKILEYQREKAEREEER 169
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.129 0.388
Gapped
Lambda K H
0.267 0.0695 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,473,979
Number of extensions: 2475817
Number of successful extensions: 2330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2315
Number of HSP's successfully gapped: 48
Length of query: 540
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 438
Effective length of database: 6,413,494
Effective search space: 2809110372
Effective search space used: 2809110372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)