RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7092
         (540 letters)



>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 122

 Score = 90.5 bits (224), Expect = 2e-22
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 40  QECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLG 99
             C DC A +PTW S   G+  CI+CS +HR LGVH S ++S  LD      +L   +  
Sbjct: 16  DVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDV-LGTSELLLAKNI 74

Query: 100 GNANA 104
           GNA  
Sbjct: 75  GNAGF 79



 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 352 AVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAMKAEFGPFNAGQFDSPPPDCTH 411
            +HR LGVH S ++S  LD      +L   +  GNA   +       +     P P    
Sbjct: 43  GIHRELGVHYSRMQSLTLDV-LGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDM 101

Query: 412 TLPLAF 417
                +
Sbjct: 102 IARKDY 107


>d1u5ka2 g.45.1.2 (A:81-237) Recombinational repair protein RecO,
           C-terminal domain {Deinococcus radiodurans [TaxId:
           1299]}
          Length = 157

 Score = 31.2 bits (70), Expect = 0.14
 Identities = 11/66 (16%), Positives = 18/66 (27%), Gaps = 3/66 (4%)

Query: 29  LLMLQIITFFPQ--ECFDCNAKNPTWSSVTYGVFICIDCSAVHRGLGVHLSFVRSTQLDT 86
             +L +    PQ   C  C A +P       G  +C  C+A        +       +  
Sbjct: 58  YKLLGLAGVIPQTARCARCGAPDPEHPDPLGGQLLCSKCAA-LPPYPPAVLDFLRHAVRR 116

Query: 87  NWTWVQ 92
                 
Sbjct: 117 TVRASF 122


>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts),
           dimerisation domain {Cow (Bos taurus), mitochondrial
           [TaxId: 9913]}
          Length = 109

 Score = 27.9 bits (62), Expect = 1.2
 Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 2/69 (2%)

Query: 429 RSGGLGGKKLGKGGLGAQKVKANFAELEKEAELADSLKMQSATSKPQSVADVERENEDSI 488
            S  L    LGK   GA  +          A+L   L        P SV  ++ E     
Sbjct: 13  HSPSLHNLVLGK--YGALVICETSELKANLADLGRRLGQHVVGMAPLSVGSLDDEPGGEA 70

Query: 489 ENISLRLAY 497
           E   L   Y
Sbjct: 71  ETKMLSQPY 79


>d1xhba1 b.42.2.1 (A:423-553) Polypeptide
           N-acetylgalactosaminyltransferase 1, C-terminal domain
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 131

 Score = 27.2 bits (59), Expect = 2.8
 Identities = 12/106 (11%), Positives = 35/106 (33%), Gaps = 1/106 (0%)

Query: 62  CIDCSAVHRGLGVHLSFVRSTQLDTNWTWVQLRQMQLGGNANAPNGQNTRLSLWRSWGSF 121
           C+D  A      V +        +  +++   ++++        +  N  +++ +     
Sbjct: 20  CLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKLNGPVTMLKCHHLK 79

Query: 122 PLAFFKQL-VNLWLNIEMYHFSISTTAQALVSFFNQHNCTSKDAQQ 166
               ++   V L L     +  +    +      +  +CT   +QQ
Sbjct: 80  GNQLWEYDPVKLTLQHVNSNQCLDKATEEDSQVPSIRDCTGSRSQQ 125


>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase
           subunit I {Thermus thermophilus [TaxId: 274]}
          Length = 549

 Score = 28.0 bits (62), Expect = 3.1
 Identities = 3/37 (8%), Positives = 10/37 (27%), Gaps = 1/37 (2%)

Query: 121 FPLAFFKQLVNLWLNIEMYHFSISTTAQALVSFFNQH 157
            P    K + +    + +    +      ++     H
Sbjct: 392 LPNLTGKPISDAQRRLGLAVVWLWFLGMMIM-AVGLH 427


>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal
           domain {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 265

 Score = 26.9 bits (59), Expect = 6.0
 Identities = 11/63 (17%), Positives = 18/63 (28%)

Query: 309 DAKPSNLGVKKIQSKKPSGFVCRCPPFYQANVLTTTPPRQSLVAVHRGLGVHLSFVRSTQ 368
           D   +         +  +         Y+ NVL    PR+  V V     VH       +
Sbjct: 104 DNGVNPQKASSSTLESGTLRQELAAVCYETNVLGFKGPRKMSVIVPGMNMVHERVCIRPR 163

Query: 369 LDT 371
            + 
Sbjct: 164 NEH 166


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.129    0.388 

Gapped
Lambda     K      H
   0.267   0.0561    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,906,566
Number of extensions: 86084
Number of successful extensions: 231
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 10
Length of query: 540
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 450
Effective length of database: 1,171,896
Effective search space: 527353200
Effective search space used: 527353200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.3 bits)