BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7093
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor
Methylation By Prmc
Length = 276
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 133/285 (46%), Gaps = 22/285 (7%)
Query: 30 LKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECR 89
L+E ++ + ++ P + I ++ H+ T + + T+LT++Q L+ L R
Sbjct: 7 LREAISQLQASESPRRDAEI--LLEHV--TGRGRTFILAFGETQLTDEQCQQLDALLTRR 62
Query: 90 LARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSG 149
P+ ++ F L L ++P IPR +TE L++ +L P R++++G+G
Sbjct: 63 RDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQ---PCRILDLGTG 119
Query: 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ 209
TGAI ++L P + IA+D+ A L ++NA H + + ++ S
Sbjct: 120 TGAIALALASERPDCEIIAVDRMPDAVSLAQRNA-QHLAIKNIHILQSDWFSA------- 171
Query: 210 PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL 269
L Q+F ++VSNPPY+ D P L+ +E + AL G+ I I N L
Sbjct: 172 --LAGQQFAMIVSNPPYIDEQD-PHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNAL 228
Query: 270 KPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDR 314
G + LE + +++ + G+H VE +D+ + +R
Sbjct: 229 VSGGFLLLEHGWQQGEAVRQAFILAGYHD----VETCRDYGDNER 269
>pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein
(N5)-Glutamine Methyltransferase (Hemk)
Length = 277
Score = 97.8 bits (242), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 133/285 (46%), Gaps = 22/285 (7%)
Query: 30 LKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECR 89
L+E ++ + ++ P + I ++ H+ T + + T+LT++Q L+ L R
Sbjct: 7 LREAISQLQASESPRRDAEI--LLEHV--TGRGRTFILAFGETQLTDEQCQQLDALLTRR 62
Query: 90 LARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSG 149
P+ ++ F L L ++P IPR +TE L++ +L P R++++G+G
Sbjct: 63 RDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQ---PCRILDLGTG 119
Query: 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ 209
TGAI ++L P + IA+D+ A L ++NA H + + ++ S
Sbjct: 120 TGAIALALASERPDCEIIAVDRMPDAVSLAQRNA-QHLAIKNIHILQSDWFSA------- 171
Query: 210 PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL 269
L Q+F ++VSNPPY+ D P L+ +E + AL G+ I I N L
Sbjct: 172 --LAGQQFAMIVSNPPYIDEQD-PHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNAL 228
Query: 270 KPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDR 314
G + LE + +++ + G+H VE +D+ + +R
Sbjct: 229 VSGGFLLLEHGWQQGEAVRQAFILAGYHD----VETCRDYGDNER 269
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 84.7 bits (208), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 16/214 (7%)
Query: 109 LKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIA 168
++ P IPR +TE L++ L+ TR+I++G+G+G I +S+ P + A
Sbjct: 1 FEVGPDCLIPRPDTEVLVEEAIRFLKRXPSG-TRVIDVGTGSGCIAVSIALACPGVSVTA 59
Query: 169 IDQSKHACDLTEQNAVMHNVANQLQVFHAEID---SKGQVKNLQPDLLEQKFDLVVSNPP 225
+D S A + +NA + F A +D + G ++ + + +VSNPP
Sbjct: 60 VDLSXDALAVARRNA---------ERFGAVVDWAAADGIEWLIERAERGRPWHAIVSNPP 110
Query: 226 YVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL-KPNGSIFLETNHDHL 284
Y+P+ +I +LEP + YE ALDGG DGL + L + +FLE H+
Sbjct: 111 YIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRXAALPPYVLARGRAGVFLEVGHNQA 170
Query: 285 DKIKEWLGICGHHMKLKLVENYKDFNNKDRFVEL 318
D++ + V KD DR + +
Sbjct: 171 DEVARLF--APWRERGFRVRKVKDLRGIDRVIAV 202
>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk
pdb|1NV8|B Chain B, N5-Glutamine Methyltransferase, Hemk
pdb|1NV9|A Chain A, Hemk, Apo Structure
Length = 284
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 132/281 (46%), Gaps = 32/281 (11%)
Query: 18 ALATKANVVDNVLKEWT------AKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKN 71
A+ T+ NV K W+ K E E S+ ++ + I + K+
Sbjct: 2 AMDTRKNVSGAERKIWSLIRDCSGKLEGV----TETSVLEVLLIVSRVLGIRKEDLFLKD 57
Query: 72 TELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITD 131
++ + + +L E R + P+ YI+ E F L+ + VF+PR ETEEL+++ +
Sbjct: 58 LGVSPTEEKRILELVEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALE 117
Query: 132 KLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQ 191
+ + + +IG+G+GAI +S+ K F A D S A ++ +NA H V+++
Sbjct: 118 LIR--KYGIKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERHGVSDR 174
Query: 192 LQVFHAEIDSKGQVKNLQPDLLEQKF---DLVVSNPPYVPSLDIPKLEPEIALYEDIKAL 248
V E L+P ++KF ++++SNPPYV S P+ L+E +AL
Sbjct: 175 FFVRKGEF--------LEP--FKEKFASIEMILSNPPYVKS---SAHLPKDVLFEPPEAL 221
Query: 249 DGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKE 289
GG DGL+ + F Y + +E D ++++K+
Sbjct: 222 FGGEDGLDFYRE---FFGRYDTSGKIVLMEIGEDQVEELKK 259
>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|B Chain B, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|C Chain C, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
Length = 282
Score = 77.4 bits (189), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 121/247 (48%), Gaps = 22/247 (8%)
Query: 46 ENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFR 105
E S+ ++ + I + K+ ++ + + +L E R + P+ YI+ E F
Sbjct: 30 ETSVLEVLLIVSRVLGIRKEDLFLKDLGVSPTEEKRILELVEKRASGYPLHYILGEKEFM 89
Query: 106 DLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLK 165
L+ + VF+PR ETEEL+++ + + + + +IG+G+GAI +S+ K F
Sbjct: 90 GLSFLVEEGVFVPRPETEELVELALELIR--KYGIKTVADIGTGSGAIGVSVAK-FSDAI 146
Query: 166 AIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF---DLVVS 222
A D S A ++ +NA H V+++ V E L+P ++KF ++++S
Sbjct: 147 VFATDVSSKAVEIARKNAERHGVSDRFFVRKGEF--------LEP--FKEKFASIEMILS 196
Query: 223 NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282
NPPYV S P+ L+E +AL GG DGL+ + F Y + +E D
Sbjct: 197 NPPYVKS---SAHLPKDVLFEPPEALFGGEDGLDFYRE---FFGRYDTSGKIVLMEIGED 250
Query: 283 HLDKIKE 289
++++K+
Sbjct: 251 QVEELKK 257
>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
pdb|1VQ1|B Chain B, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
Length = 294
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 119/247 (48%), Gaps = 22/247 (8%)
Query: 46 ENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFR 105
E S+ ++ + I + K+ ++ + + +L E R + P+ YI+ E F
Sbjct: 42 ETSVLEVLLIVSRVLGIRKEDLFLKDLGVSPTEEKRILELVEKRASGYPLHYILGEKEFX 101
Query: 106 DLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLK 165
L+ + VF+PR ETEEL+++ + + + + +IG+G+GAI +S+ K F
Sbjct: 102 GLSFLVEEGVFVPRPETEELVELALELIR--KYGIKTVADIGTGSGAIGVSVAK-FSDAI 158
Query: 166 AIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF---DLVVS 222
A D S A ++ +NA H V+++ V E L+P ++KF + ++S
Sbjct: 159 VFATDVSSKAVEIARKNAERHGVSDRFFVRKGEF--------LEP--FKEKFASIEXILS 208
Query: 223 NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282
NPPYV S P+ L+E +AL GG DGL+ + F Y + E D
Sbjct: 209 NPPYVKS---SAHLPKDVLFEPPEALFGGEDGLDFYRE---FFGRYDTSGKIVLXEIGED 262
Query: 283 HLDKIKE 289
++++K+
Sbjct: 263 QVEELKK 269
>pdb|2PJD|A Chain A, Crystal Structure Of 16s Rrna Methyltransferase Rsmc
Length = 343
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 71/143 (49%), Gaps = 22/143 (15%)
Query: 89 RLARMPV---QYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESS--NHTPTRM 143
RL + PV + E++ LT+K P VF + + +D+ + L S+ HT ++
Sbjct: 146 RLEKQPVFDAEKFWGEYSVDGLTVKTLPGVF-----SRDGLDVGSQLLLSTLTPHTKGKV 200
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203
+++G G G ++++ +H PK++ D S A + + + V +VF + + S+
Sbjct: 201 LDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG--EVFASNVFSE- 257
Query: 204 QVKNLQPDLLEQKFDLVVSNPPY 226
++ +FD ++SNPP+
Sbjct: 258 ---------VKGRFDXIISNPPF 271
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
+MI++G G G I+ ++LKHFP+L + ++ A DL +NA VA++++ +I
Sbjct: 193 KMIDVGGGIGDISAAMLKHFPELDSTILNLPG-AIDLVNENAAEKGVADRMRGIAVDI 249
>pdb|2ZUL|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533) In Complex With
Cofactor S-Adenosyl-L-Methionine
pdb|2ZWV|A Chain A, Crystal Structure Of Thermus Thermophilus 16s Rrna
Methyltransferase Rsmc (Ttha0533)
Length = 375
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 33/156 (21%)
Query: 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184
L++ + ++L +++++G+G GA+T+ L + ++ + D A L+ Q +
Sbjct: 219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDL---ASVLSLQKGL 275
Query: 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYED 244
N A + Q H+++D + E +FD++V+NPP+
Sbjct: 276 EAN-ALKAQALHSDVD--------EALTEEARFDIIVTNPPF------------------ 308
Query: 245 IKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280
GG L++ + + L+P G FL +N
Sbjct: 309 ---HVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341
>pdb|3DMF|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet
pdb|3DMG|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adohcy
pdb|3DMH|A Chain A, T. Thermophilus 16s Rrna N2 G1207 Methyltransferase (Rsmc)
In Complex With Adomet And Guanosine
Length = 381
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 68/156 (43%), Gaps = 33/156 (21%)
Query: 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184
L++ + ++L +++++G+G GA+T+ L + ++ + D A L+ Q +
Sbjct: 219 LLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDL---ASVLSLQKGL 275
Query: 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYED 244
N A + Q H+++D + E +FD++V+NPP+
Sbjct: 276 EAN-ALKAQALHSDVD--------EALTEEARFDIIVTNPPF------------------ 308
Query: 245 IKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280
GG L++ + + L+P G FL +N
Sbjct: 309 ---HVGGAVILDVAQAFVNVAAARLRPGGVFFLVSN 341
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 36.2 bits (82), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
T I+IGSG GA++I+L K A+D SKH ++ +N N+ +++Q+ +
Sbjct: 43 TAGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHXNEIALKNIADANLNDRIQIVQGD 101
Query: 199 I 199
+
Sbjct: 102 V 102
>pdb|1WXW|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
Length = 382
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 121 ETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180
+T +D ++L R +++ S G + L F ++ +A+D S A E
Sbjct: 191 KTGAYLDQRENRLYXERFRGERALDVFSYAGGFALHLALGFREV--VAVDSSAEALRRAE 248
Query: 181 QNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPP 225
+NA ++ + N ++V E ++ ++ L+ + ++FDLVV +PP
Sbjct: 249 ENARLNGLGN-VRVL--EANAFDLLRRLEKE--GERFDLVVLDPP 288
>pdb|2CWW|A Chain A, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
pdb|2CWW|B Chain B, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
Length = 382
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 53/105 (50%), Gaps = 7/105 (6%)
Query: 121 ETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180
+T +D ++L R +++ S G + L F ++ +A+D S A E
Sbjct: 191 KTGAYLDQRENRLYMERFRGERALDVFSYAGGFALHLALGFREV--VAVDSSAEALRRAE 248
Query: 181 QNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPP 225
+NA ++ + N ++V E ++ ++ L+ + ++FDLVV +PP
Sbjct: 249 ENARLNGLGN-VRVL--EANAFDLLRRLEKE--GERFDLVVLDPP 288
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 34.3 bits (77), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH 186
D + D LES ++++G GTG + + FPKLK I D+ + +L+ N + +
Sbjct: 183 DFVFDGLES-------IVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTY 235
>pdb|3LPM|A Chain A, Crystal Structure Of Putative Methyltransferase Small
Domain Protein From Listeria Monocytogenes
pdb|3LPM|B Chain B, Crystal Structure Of Putative Methyltransferase Small
Domain Protein From Listeria Monocytogenes
Length = 259
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
++I++ SG G I + LL K K + ++ + D +++ + + +Q+++ E D
Sbjct: 52 KIIDLCSGNGIIPL-LLSTRTKAKIVGVEIQERLADXAKRSVAYNQLEDQIEII--EYDL 108
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLD 231
K ++ +L P +++ D+V NPPY + D
Sbjct: 109 K-KITDLIP---KERADIVTCNPPYFATPD 134
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
Length = 299
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 44/84 (52%), Gaps = 13/84 (15%)
Query: 143 MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202
++EIG GTG +T+ LL K+ I ID S+ ++ ++ ++ N L+V+ +
Sbjct: 46 VLEIGCGTGNLTVKLLPLAKKVITIDID-SRMISEVKKR--CLYEGYNNLEVYEGD---- 98
Query: 203 GQVKNLQPDLLEQKFDLVVSNPPY 226
+K + P KFD+ +N PY
Sbjct: 99 -AIKTVFP-----KFDVCTANIPY 116
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH 186
D + D LES ++++G GTG + + FPKLK I D+ + +L+ N + +
Sbjct: 183 DFVFDGLES-------IVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTY 235
>pdb|4DCM|A Chain A, Crystal Structure Of Methyltransferase Rlmg Modifying
G1835 Of 23s Rrna In Escherichia Coli
Length = 375
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 65/154 (42%), Gaps = 30/154 (19%)
Query: 143 MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202
++++G G G I ++LL P+ K + +D+S A + N V N L E
Sbjct: 226 IVDLGCGNGVIGLTLLDKNPQAKVVFVDESPXAVASSRLN-VETNXPEALD--RCEFXIN 282
Query: 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262
+ ++P +F+ V+ NPP+ + AL +++ A + H
Sbjct: 283 NALSGVEP----FRFNAVLCNPPF---------HQQHALTDNV-AWEXFHH--------- 319
Query: 263 VFGSNYLKPNGSIFLETNH--DHLDKIKEWLGIC 294
LK NG +++ N D+ K+K+ G C
Sbjct: 320 --ARRCLKINGELYIVANRHLDYFHKLKKIFGNC 351
>pdb|2ESR|A Chain A, Conserved Hypothetical Protein- Streptococcus Pyogenes
pdb|2ESR|B Chain B, Conserved Hypothetical Protein- Streptococcus Pyogenes
Length = 177
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/95 (20%), Positives = 43/95 (45%), Gaps = 8/95 (8%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++++ +G+G + I + A+ +++++ A + + N + N+ + E +
Sbjct: 34 RVLDLFAGSGGLAIEAVSRGXS-AAVLVEKNRKAQAIIQDNIIXTKAENRFTLLKXEAER 92
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLE 236
D L +FDLV +PPY + +E
Sbjct: 93 -------AIDCLTGRFDLVFLDPPYAKETIVATIE 120
>pdb|2ERC|A Chain A, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|2ERC|B Chain B, Crystal Structure Of Ermc' A Rrna-Methyl Transferase
pdb|1QAM|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAN|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAO|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
pdb|1QAQ|A Chain A, The Structure Of The Rrna Methyltransferase Ermc':
Implications For The Reaction Mechanism
Length = 244
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 143 MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202
+ EIGSG G T+ L++ + AI ID C TE V H + QV + +I
Sbjct: 34 IFEIGSGKGHFTLELVQRCNFVTAIEIDHK--LCKTTENKLVDH---DNFQVLNKDI--- 85
Query: 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPK 234
LQ + + + N PY S DI +
Sbjct: 86 -----LQFKFPKNQSYKIFGNIPYNISTDIIR 112
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 18/106 (16%)
Query: 125 LID--IITDKLESSNHTPTRMI-EIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
LID + +ES+N T ++ EIG G G +T L K+ K+ I ID+S
Sbjct: 6 LIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKS--------- 56
Query: 182 NAVMHNVANQLQVFHAEIDSK-GQVKNLQPDLLEQKFDLVVSNPPY 226
+ AN+L+ + I+ G L+ DL + F+ VV+N PY
Sbjct: 57 ---LEPYANKLKELYNNIEIIWGDA--LKVDLNKLDFNKVVANLPY 97
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 18/106 (16%)
Query: 125 LID--IITDKLESSNHTPTRMI-EIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
LID + +ES+N T ++ EIG G G +T L K+ K+ I ID+S
Sbjct: 4 LIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKS--------- 54
Query: 182 NAVMHNVANQLQVFHAEIDSK-GQVKNLQPDLLEQKFDLVVSNPPY 226
+ AN+L+ + I+ G L+ DL + F+ VV+N PY
Sbjct: 55 ---LEPYANKLKELYNNIEIIWGDA--LKVDLNKLDFNKVVANLPY 95
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 58/119 (48%), Gaps = 22/119 (18%)
Query: 115 VFIPRSETEE--LID--IITDKLESSNHTPTRMI-EIGSGTGAITISLLKHFPKLKAIAI 169
+F P+ + + LID + +ES+N T ++ EIG G G +T L K+ K+ I I
Sbjct: 21 MFKPKKKLGQCFLIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEI 80
Query: 170 DQS--KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
D+S +A L E + N +++ + L+ DL + F+ VV+N PY
Sbjct: 81 DKSLEPYANKLKE-------LYNNIEIIWGDA--------LKVDLNKLDFNKVVANLPY 124
>pdb|3T5V|B Chain B, Sac3:thp1:sem1 Complex
pdb|3T5V|E Chain E, Sac3:thp1:sem1 Complex
Length = 455
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 9 VLVLSLQKRALATKANVVDNVLKEWTAKFEQAKIPEP--ENSIQNIMAHIFNTTKIDDVT 66
+L++ L+K + T N++ V+K WT ++ Q K+P E +Q + F ++T
Sbjct: 330 LLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEIT 389
Query: 67 I 67
I
Sbjct: 390 I 390
>pdb|3KPA|A Chain A, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
pdb|3KPA|B Chain B, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
pdb|3KPA|C Chain C, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
Length = 168
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 20/103 (19%)
Query: 163 KLKAIAIDQSKHACDLTEQNA-----VMHNVANQLQVFHAEIDSKG---------QVKNL 208
K KA D K L E+ A V HN A+ FH E + +G KN
Sbjct: 24 KTKAGPRDGDKWTARLKEEYASLITYVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNE 83
Query: 209 QPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGG 251
+ + E FD+ V+ P P + +P+LE + +K GG
Sbjct: 84 KYEF-EXNFDIPVTYPQAPPEIALPELEGKT-----VKXYRGG 120
>pdb|1KXZ|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1KXZ|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, P1 Spacegroup
pdb|1L3B|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|G Chain G, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3B|H Chain H, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup W LONG CELL
pdb|1L3C|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3C|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, C2 Spacegroup With Short
Cell
pdb|1L3I|A Chain A, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|B Chain B, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|C Chain C, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|D Chain D, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|E Chain E, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1L3I|F Chain F, Mt0146, The Precorrin-6y Methyltransferase (Cbit) Homolog
From M. Thermoautotrophicum, Adohcy Binary Complex
pdb|1F38|A Chain A, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|B Chain B, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|C Chain C, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
pdb|1F38|D Chain D, X-Ray Crystallographic Structure Of Precorrin 8w
Decarboxylase, The Product Of Gene Mt0146 In The
Methanobacterium Thermoautotrophicum Genome
Length = 192
Score = 31.2 bits (69), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
+++G GTG +T+ L ++ AID++ A TE N H + + + + +
Sbjct: 38 VDVGCGTGGVTLELAGRVRRV--YAIDRNPEAISTTEXNLQRHGLGDNVTLXEGD 90
>pdb|3DTN|A Chain A, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei .
pdb|3DTN|B Chain B, Crystal Structure Of Putative Methyltransferase-mm_2633
From Methanosarcina Mazei
Length = 234
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 48/100 (48%), Gaps = 26/100 (26%)
Query: 143 MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202
++++G+GTG ++ L++ +P+ +D S+ ++ +N N+
Sbjct: 48 ILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIA-KNRFRGNL-------------- 92
Query: 203 GQVKNLQPDL----LEQKFDLVVSNPPYVPSLDIPKLEPE 238
+VK ++ D E+K+D+VVS +L I LE E
Sbjct: 93 -KVKYIEADYSKYDFEEKYDMVVS------ALSIHHLEDE 125
>pdb|3Q87|B Chain B, Structure Of Eukaryotic Translation Termination Complex
Methyltransferase Mtq2-Trm112
Length = 170
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 167 IAIDQSKHACDLTEQ----NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLL----EQKFD 218
I +D +TEQ N V V+ L + E G + ++ DLL ++ D
Sbjct: 26 IVLDLGTSTGVITEQLRKRNTV---VSTDLNIRALESHRGGNL--VRADLLCSINQESVD 80
Query: 219 LVVSNPPYVPSLDIP 233
+VV NPPYVP D P
Sbjct: 81 VVVFNPPYVPDTDDP 95
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 13/100 (13%)
Query: 128 IITDKLESSNHTPTRMI-EIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH 186
II ++ + PT ++ E+G GTG +T+ LL+ K+ A +D + +L +
Sbjct: 16 IINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD-PRLVAEL-HKRVQGT 73
Query: 187 NVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
VA++LQV ++ L+ DL FD V+N PY
Sbjct: 74 PVASKLQVLVGDV--------LKTDL--PFFDTCVANLPY 103
>pdb|2WUQ|A Chain A, Crystal Structure Of Blab Protein From Streptomyces Cacaoi
pdb|2WUQ|B Chain B, Crystal Structure Of Blab Protein From Streptomyces Cacaoi
Length = 318
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 9/56 (16%)
Query: 95 VQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGT 150
V+ +++EW FRDLT+ R EL + ++ ES++ + I +GT
Sbjct: 126 VEQMVREWGFRDLTV---------RHSMRELSETPAERFESADAHLAHALAISAGT 172
>pdb|3C0K|A Chain A, Crystal Structure Of A Ribosomal Rna Methyltranferase
pdb|3C0K|B Chain B, Crystal Structure Of A Ribosomal Rna Methyltranferase
Length = 396
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++ S TG +S L + +++D S+ A D+ QN + N+L + AE
Sbjct: 223 RVLNCFSYTGGFAVSALXGGCS-QVVSVDTSQEALDIARQNVEL----NKLDLSKAEFVR 277
Query: 202 KGQVKNLQPDL-LEQKFDLVVSNPP 225
K L+ +KFD++V +PP
Sbjct: 278 DDVFKLLRTYRDRGEKFDVIVXDPP 302
>pdb|1D0S|A Chain A, Crystal Structure Of Nicotinate Mononucleotide : 5,6-
Dimethylbenzimidazole Phosphoribosyltransferase (Cobt)
From Salmonella Typhimurium Complexed With 5,
6-Dimethylbenzimidazole
pdb|1D0V|A Chain A, Crystal Structure Of Nicotinate Mononucleotide:5,6-
Dimethylbenzimidazole Phosphoribosyltransferase (Cobt)
From Salmonella Typhimurium Complexed With Its Reaction
Products Determined To 1.9 A Resolution
Length = 356
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 15/91 (16%)
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV-----------ANQL 192
+ + G G I + + +A+ ++ S++ACDL ++ + V A +
Sbjct: 128 MRVARGCGNIAVGPAMSRLQAEALLLEVSRYACDLAQRGVTLFGVGELGMANTTPAAAMV 187
Query: 193 QVFHAEIDSK---GQVKNLQPDLLEQKFDLV 220
VF D+K G NL P ++ K D+V
Sbjct: 188 SVFTGS-DAKEVVGIGANLPPSRIDNKVDVV 217
>pdb|3HM2|A Chain A, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|B Chain B, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|C Chain C, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|D Chain D, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|E Chain E, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|F Chain F, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|G Chain G, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|H Chain H, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
Length = 178
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 143 MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQV 194
+ +IG G+G+I I L+ P+ A+ + S+ + NA+ V++++ V
Sbjct: 29 LWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAV 80
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 128 IITDKLESSNHT---PTRMIEIGSGTGAITISLLKHFPKLKAIAID 170
IIT KL H ++++G G GA ++ H+P +K + D
Sbjct: 187 IITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFD 232
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAID 170
T ++++G GTGA+ ++ +P + AI D
Sbjct: 205 TTIVDVGGGTGAVASMIVAKYPSINAINFD 234
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 143 MIEIGSGTGAITISLLKHFPKLKAIAID 170
++++G GTGA+ +++ +P +K I D
Sbjct: 204 LVDVGGGTGAVINTIVSKYPTIKGINFD 231
>pdb|2YXD|A Chain A, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
pdb|2YXD|B Chain B, Crystal Structure Of Cobalamin Biosynthesis Precorrin 8w
Decarboxylase (Cbit)
Length = 183
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 143 MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN 190
++++G G+G T+ + K + AID A ++T+QN N+ N
Sbjct: 39 VVDVGCGSGGXTVEIAKRCKFV--YAIDYLDGAIEVTKQNLAKFNIKN 84
>pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
pdb|3MGG|B Chain B, Crystal Structure Of Methyl Transferase From
Methanosarcina Mazei
Length = 276
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN 190
+++E G G GA T+ L K+ P + +ID S + + +N + + N
Sbjct: 39 AKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN 88
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,864,686
Number of Sequences: 62578
Number of extensions: 418309
Number of successful extensions: 1060
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1015
Number of HSP's gapped (non-prelim): 46
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)