BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7093
(322 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q921L7|HEMK1_MOUSE HemK methyltransferase family member 1 OS=Mus musculus GN=Hemk1
PE=2 SV=2
Length = 340
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/298 (38%), Positives = 171/298 (57%), Gaps = 11/298 (3%)
Query: 28 NVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCE 87
++ WT FE+ IPE S + I+AH+ + LT Q+ + +LC
Sbjct: 44 GMVNHWTRVFEERGIPEARESSEYIVAHVLGAKTFQSLKPALWTKPLTPQQLECIQELCG 103
Query: 88 CRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTR----- 142
RL RMPVQYI+ EW+F+ L+LKM PPVFIPR ETEEL++ + +++ H
Sbjct: 104 RRLQRMPVQYILGEWDFQGLSLKMVPPVFIPRPETEELVEWVLEEVAQRPHAVRAQDGPL 163
Query: 143 MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202
++E+G G+GAIT+SLL PK + +A+D+ + A LT +NA + +++++ H +I S+
Sbjct: 164 ILEVGCGSGAITLSLLSQLPKSRVVAVDKEEAAVSLTHENAQRLQLQDRIRIIHLDITSE 223
Query: 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262
G +L P DLVVSNPPY+ D+ +L PEI YED+ ALDGG +G++II I
Sbjct: 224 GCCTHLLP---WSPLDLVVSNPPYIFRKDMEQLAPEICSYEDLVALDGGDEGMDIITHIL 280
Query: 263 VFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH-HMKLKLVENYKDFNNKDRFVELK 319
L +GSIFLE + H + + WL H + L LV +DF + RF+ ++
Sbjct: 281 TLAPQLLNASGSIFLEVDPRHPELVSSWLQ--SHPDLHLSLVGVREDFCGRPRFLHVQ 336
>sp|Q9Y5R4|HEMK1_HUMAN HemK methyltransferase family member 1 OS=Homo sapiens GN=HEMK1
PE=2 SV=1
Length = 338
Score = 195 bits (496), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 176/306 (57%), Gaps = 11/306 (3%)
Query: 19 LATKANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQ 78
LA ++ ++ ++ WT FE+ IPE S + I+AH+ + LT+ Q
Sbjct: 35 LAGLSSAIE-LVSHWTGVFEKRGIPEARESSEYIVAHVLGAKTFQSLRPALWTQPLTSQQ 93
Query: 79 ITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNH 138
+ + +L RL RMPVQYI+ EW+F+ L+L+M PPVFIPR ETEEL++ + +++ +H
Sbjct: 94 LQCIRELSSRRLQRMPVQYILGEWDFQGLSLRMVPPVFIPRPETEELVEWVLEEVAQRSH 153
Query: 139 ---TPTR--MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQ 193
+P ++E+G G+GAI++SLL P+ + IA+D+ + A LT +NA + +++
Sbjct: 154 AVGSPGSPLILEVGCGSGAISLSLLSQLPQSRVIAVDKREAAISLTHENAQRLRLQDRIW 213
Query: 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHD 253
+ H ++ S+ +L DL+VSNPPYV D+ +L PEI YED ALDGG +
Sbjct: 214 IIHLDMTSERSWTHLP----WGPMDLIVSNPPYVFHQDMEQLAPEIRSYEDPAALDGGEE 269
Query: 254 GLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKD 313
G++II I LK +GSIFLE + H + + WL + L LV +DF +
Sbjct: 270 GMDIITHILALAPRLLKDSGSIFLEVDPRHPELVSSWLQ-SRPDLYLNLVAVRRDFCGRP 328
Query: 314 RFVELK 319
RF+ ++
Sbjct: 329 RFLHIR 334
>sp|B5YIQ8|PRMC_THEYD Release factor glutamine methyltransferase OS=Thermodesulfovibrio
yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
GN=prmC PE=3 SV=1
Length = 279
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 147/270 (54%), Gaps = 17/270 (6%)
Query: 50 QNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTL 109
Q I+ H+ KID + + +N E+T++Q + L E RL + P+QYII E F ++ +
Sbjct: 22 QEIICHVL---KIDKIQLYTENPEITSEQAHTIKSLIERRLKKEPLQYIIGECYFYNIKI 78
Query: 110 KMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAI 169
K+ V IPR ETE L++ + ++ + ++T R++++ +G+G I +++ K+ P+ + I
Sbjct: 79 KVGRGVLIPRPETEILVEQVLERQKLISNTGNRILDLCTGSGCIALAIGKNAPEFQIFGI 138
Query: 170 DQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPS 229
D+S+ A +N ++N+ N + + V ++ E+ F + +NPPYV +
Sbjct: 139 DKSEKAVKYATENKALNNIKNVIFL----------VGDMFNPFKEKIFACITANPPYVKT 188
Query: 230 LDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKE 289
+I KL+PEI YE ++AL+GG DGLN + I YL +G IFLE ++
Sbjct: 189 DEISKLQPEIKNYEPLEALNGGEDGLNFYRKIIENAEKYLLNSGLIFLEIGQGQAKAVQN 248
Query: 290 WLGICGHHMKLKLVENYKDFNNKDRFVELK 319
+ G + ++E KD DR + L+
Sbjct: 249 IALMSGFN----VIEVVKDIAGIDRVMILQ 274
>sp|Q7NJS7|PRMC_GLOVI Release factor glutamine methyltransferase OS=Gloeobacter violaceus
(strain PCC 7421) GN=prmC PE=3 SV=1
Length = 286
Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 136/284 (47%), Gaps = 29/284 (10%)
Query: 46 ENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQI---------THLNKLCECRLAR---- 92
E ++ H + +ID ++E T L ++ H KL R
Sbjct: 10 EQALAEARVHDIDAAEID--YLIEAVTGLDRLRVRLGGPQALEAHREKLAALWRRRIEEA 67
Query: 93 MPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGA 152
MP+QY++ ++RDL L++ P V IPR E+E L+D+ D S R++++G+G+GA
Sbjct: 68 MPLQYLLGTAHWRDLQLQVNPAVLIPRPESEALVDVAVDFCRSCAGA--RVVDLGTGSGA 125
Query: 153 ITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL 212
I +++ + P A+D S+ A + N + ++ Q+ + N L
Sbjct: 126 IAVAVARALPGATVWAVDASEAALVVAGANIERYGLSEQVHLLRG---------NWFVPL 176
Query: 213 LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPN 272
Q FD V+SNPPY+PS +I L PE+ L+E + ALDGG DGL+ ++ I + +L+P
Sbjct: 177 PTQPFDAVLSNPPYIPSAEIAALMPEVRLHEPLSALDGGSDGLDAVRQIIADAARHLRPG 236
Query: 273 GSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
G + LE + + + + + +D+ +R V
Sbjct: 237 GILALEVMAGQGPTVVQ---LLARDSRYGCIRTVRDWAGIERIV 277
>sp|Q9A9T7|PRMC_CAUCR Release factor glutamine methyltransferase OS=Caulobacter
crescentus (strain ATCC 19089 / CB15) GN=prmC PE=3 SV=2
Length = 289
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/292 (29%), Positives = 135/292 (46%), Gaps = 20/292 (6%)
Query: 28 NVLKEWTA---KFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNK 84
++K WTA + + A I +P + ++ T+ + VT + EL+ +QI LN
Sbjct: 4 TLVKAWTAAKDRLKDAGIDQPSIDARLMLEVAAGVTRTEIVT--DPYRELSAEQIATLND 61
Query: 85 LCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMI 144
E R R PV +II F + L++ V PR ETE ++D + H M+
Sbjct: 62 YLERRARREPVSHIIGRKGFWKILLQVNKNVLTPRPETEVIVDEVLKAF--PEHMAFSML 119
Query: 145 EIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204
++G G+G I +++L P K + ID S A + +NA ++ + + H + +
Sbjct: 120 DLGVGSGTILLAVLAERPAAKGLGIDASSEALAVARENAANLDLNTRAALLHGDWTTG-- 177
Query: 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVF 264
L FDLVVSNPPY+P+ I LEPE+ ++E ALDGG DGL + +
Sbjct: 178 -------LGSDSFDLVVSNPPYIPTEVIDTLEPEVRIHEPRLALDGGPDGLAAYRELAPE 230
Query: 265 GSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
LKP G +E +D ++ G V KD + DR V
Sbjct: 231 ILRVLKPGGLFAVEIGYDQSQAVEALFRAAGATE----VRTVKDLSTHDRVV 278
>sp|Q748B2|PRMC_GEOSL Release factor glutamine methyltransferase OS=Geobacter
sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA)
GN=prmC PE=3 SV=1
Length = 284
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/214 (32%), Positives = 111/214 (51%), Gaps = 15/214 (7%)
Query: 74 LTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKL 133
L +++ L R R P+QYI+ F L +TP V IPR +TE I+ + L
Sbjct: 56 LNPEELAACRGLVARRAKREPLQYILGTQEFCGLDFVVTPSVLIPRHDTEV---IVEEAL 112
Query: 134 ESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQ 193
+ H +++IG G+G I ++L K P + + ++QS A L ++NA H ++
Sbjct: 113 RRAPHAAA-VLDIGVGSGCIAVALAKQLPHAQVVGVEQSPGAIALAQRNAERHGA--RVT 169
Query: 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHD 253
+F + +P L +Q+FDL+VSNPPY+P+ D+ L+PE+ YE ALDGG D
Sbjct: 170 LFEGSL--------FEP-LGDQRFDLIVSNPPYIPTADLEALQPEVREYEPRAALDGGSD 220
Query: 254 GLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKI 287
GL+ + I YL P G + +E + +
Sbjct: 221 GLDFYRLIVPAAPEYLNPGGWLMVELGIGQAETV 254
>sp|P74003|PRMC_SYNY3 Release factor glutamine methyltransferase OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=prmC PE=3 SV=1
Length = 299
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 28/238 (11%)
Query: 92 RMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPT----RMIEIG 147
+ PVQY++ + +RD +K+T V IPR ETE +IDI+ + E S +P+ +++G
Sbjct: 77 KYPVQYLLGQTQWRDFVIKVTDDVLIPRPETELIIDIV--QHEHSALSPSNCADHWVDLG 134
Query: 148 SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI------DS 201
+G+GAI + L FP+ A+D S A + +NA ++ +++Q FH
Sbjct: 135 TGSGAIALGLAATFPQALVHAVDCSGSALAIARENAQLNQFGDRIQ-FHQGYWWEPLEHL 193
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
KGQV+ + VSNPPY+P ++ +L+PE+ +E + ALDGG DGL ++ +
Sbjct: 194 KGQVQGM------------VSNPPYIPQRELAQLQPEVIKHEPLLALDGGPDGLQAVEQL 241
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELK 319
YLKP G +E + E L G + +++ ++D + +RFV +
Sbjct: 242 IRRSPTYLKPGGFWLVEIMTGQAPMVAELLRASGAYQDIQI---HRDLASIERFVSAR 296
>sp|Q8DHV7|PRMC_THEEB Release factor glutamine methyltransferase OS=Thermosynechococcus
elongatus (strain BP-1) GN=prmC PE=3 SV=1
Length = 291
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/244 (29%), Positives = 123/244 (50%), Gaps = 22/244 (9%)
Query: 79 ITHLNKLCECRLA-RMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSN 137
+T L + + R R+P+QY+I ++ DL L +TP V IPR ETEEL+ ++ +
Sbjct: 59 LTELQERWQRRWQERVPLQYLIGVAHWHDLELVVTPSVLIPRPETEELLAVVAATVPPWQ 118
Query: 138 HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQV--- 194
+++G+G+GAI I L + FP A+D S A ++ + N + + ++++
Sbjct: 119 QQ-GHWLDLGTGSGAIAIGLARLFPAALIHAVDCSSEALEVAQVNIQKYALGDRVRCYVG 177
Query: 195 --FHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH 252
F + +GQV+ +VSNPPY+P+ + L+PE+ +E + ALDGG
Sbjct: 178 NWFDPIVPLQGQVQG------------IVSNPPYIPTSVVATLQPEVQYHEPLLALDGGT 225
Query: 253 DGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNK 312
DGL I+ I YL+P G +F+E + + + VE +D +
Sbjct: 226 DGLQAIRQILETAPEYLQPQGWLFIELMATQGKAVA---ALAMATQAYERVEILRDLSGH 282
Query: 313 DRFV 316
DRF+
Sbjct: 283 DRFL 286
>sp|Q98G94|PRMC_RHILO Release factor glutamine methyltransferase OS=Rhizobium loti
(strain MAFF303099) GN=prmC PE=3 SV=1
Length = 290
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/291 (25%), Positives = 133/291 (45%), Gaps = 24/291 (8%)
Query: 29 VLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCEC 88
+L+E A+ A + +P + I+ H TT+ + E+ + ++ I ++
Sbjct: 12 LLREARARLVAAGVGDPALDARLIVEHFSGTTRTQAIADPERTID--SNAIAAIDAALGR 69
Query: 89 RLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITD--KLESSNHTPTRMIEI 146
R PV I+ F L L ++P PR +TE L++ + K ++ R++++
Sbjct: 70 RAGGEPVHRILGYREFYGLRLSLSPETLEPRPDTETLVEAVLPFVKAMAAREGTCRILDL 129
Query: 147 GSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206
G+GTGAI ++LL P A +D S A +NA E+ G+
Sbjct: 130 GTGTGAIALALLSAVPAATATGVDISAGALATAARNA-------------GELGLGGRFT 176
Query: 207 NLQPDLLEQ---KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263
+Q D E+ ++ ++ +NPPY+P+ DI L+ E+ ++ ALDGG DGLN + I
Sbjct: 177 TVQSDWFEKVSGRYHVIAANPPYIPTRDIGNLQDEVRDFDPRLALDGGVDGLNPYRIIAA 236
Query: 264 FGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDR 314
+ +L+ I +E H D++ + G+ V +D DR
Sbjct: 237 EAARFLEAESRIAVEIGHTQRDEVTDIFKAAGYAS----VAALRDLGGNDR 283
>sp|Q9ZCB3|RFTRM_RICPR Bifunctional methyltransferase OS=Rickettsia prowazekii (strain
Madrid E) GN=prmC/trmB PE=3 SV=1
Length = 518
Score = 117 bits (294), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 142/309 (45%), Gaps = 31/309 (10%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
+ +L K + I P + ++ H+ T K + +++ N +L+ +I KL
Sbjct: 5 IKQILSNANDKLNKIGINLPGLEARILLQHV--TNKPIEHLLIKLNEQLSEAEIEAFEKL 62
Query: 86 CECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSN--HTPTRM 143
E RLA P+ YII F + V IPR +TE L+D++ + S N H +++
Sbjct: 63 LERRLAHEPIAYIIGVKEFYSREFIVNKHVLIPRIDTEVLVDVVIGLVVSRNNLHMFSKL 122
Query: 144 --------------IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA 189
+E+G+G+G I ISLL P IA D S A + + N++ +NV
Sbjct: 123 KSLDSVLTTQSYNILELGTGSGCIAISLLCELPNTNIIATDISVDAIKVAKSNSIKYNVT 182
Query: 190 NQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALD 249
+++Q+ H+ N L +QKFD +VSNPPY+ + K+ E YE AL
Sbjct: 183 DRIQIIHS---------NWFEKLDKQKFDFIVSNPPYISHTEKLKMAIETINYEPSIALF 233
Query: 250 GGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDF 309
DGL I +LKPNG I LE K+ + G+++ Y+D
Sbjct: 234 AEEDGLEAYSIIAKNAKQFLKPNGKIILEIGFSQAAKVSKIFLNYGYNIDYI----YRDL 289
Query: 310 NNKDRFVEL 318
+ +R +E+
Sbjct: 290 QSHNRVIEI 298
>sp|Q9RXR2|PRMC_DEIRA Release factor glutamine methyltransferase OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
GN=prmC PE=3 SV=1
Length = 278
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/295 (25%), Positives = 137/295 (46%), Gaps = 28/295 (9%)
Query: 28 NVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCE 87
++L + TA+ +A +P PE + ++ H+ + ++ E+ D E
Sbjct: 5 DLLTQATARLTRAGVPSPEVDARLLLEHVLGLNRT--AFLLRGGEEIGPDAEARAWDSIE 62
Query: 88 CRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIG 147
R AR+P+Q++ E + + L +PR ETE L+ + ++L R++++G
Sbjct: 63 RRAARVPLQHLTGEVEWGGVRLTSDARALVPRPETEWLLHLALEELRRVEKP--RVLDVG 120
Query: 148 SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207
+GTGA+ + L P+ + A D S A L +NA + + VK
Sbjct: 121 TGTGALALGLKAAIPQAEVTATDLSPEALSLARENAALSGL---------------DVKF 165
Query: 208 LQPDL---LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVF 264
++ L L F+L+VSNPPY+P+ D +PE+ D+ AL G DGL++ +P+
Sbjct: 166 VEGSLLAGLSGPFNLIVSNPPYLPTADRATADPEVRHDPDL-ALYAGEDGLDVARPLVAE 224
Query: 265 GSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELK 319
+ L P G++ LE + + + L G +++ D ++RFV +
Sbjct: 225 AAAALVPGGALLLELDPRNAPTLAAELRTAGWQAEVR-----PDLTGRERFVRAR 274
>sp|Q68VR6|RFTRM_RICTY Bifunctional methyltransferase OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=prmC/trmB PE=3 SV=1
Length = 518
Score = 117 bits (292), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 92/311 (29%), Positives = 145/311 (46%), Gaps = 35/311 (11%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
+ +L K + I PE + ++ H+ T K + +++ N +L+ +I KL
Sbjct: 5 IKQILNNANDKLNKIGINLPELEARILLQHV--TNKPIEHLLIKLNEQLSEAEIEAFEKL 62
Query: 86 CECRLARMPVQYI--IKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPT-- 141
E RL P+ YI IKE+ R+ + V IPR +TE LID++ + S N T
Sbjct: 63 LERRLEHEPIAYITGIKEFYSREFI--VNKHVLIPRIDTEILIDVVIGLVVSRNDLNTCS 120
Query: 142 --------------RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN 187
++E+G+G+G I ISLL P IA D S A + + N + HN
Sbjct: 121 KLKSLDSVKTIQHYNILELGTGSGCIAISLLCELPNTSVIATDISVDAIKVAKSNTIKHN 180
Query: 188 VANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKA 247
V +++Q+ H+ N L +QKFDL+VSNPPY+ + ++ E YE A
Sbjct: 181 VTDRIQIIHS---------NWFEKLNKQKFDLIVSNPPYISHSEKLEMAIETINYEPHIA 231
Query: 248 LDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYK 307
L DGL I +LKPNG I LE +K+ + G+++ Y+
Sbjct: 232 LFAEEDGLEAYSIIAKNAKQFLKPNGKIILEIGFSQAEKVCQIFLNYGYNID----HIYQ 287
Query: 308 DFNNKDRFVEL 318
D + +R +E+
Sbjct: 288 DLQSHNRVIEI 298
>sp|Q8KCD5|PRMC_CHLTE Release factor glutamine methyltransferase OS=Chlorobium tepidum
(strain ATCC 49652 / DSM 12025 / TLS) GN=prmC PE=3 SV=1
Length = 294
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 135/293 (46%), Gaps = 18/293 (6%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
V +LK A F + KI EP S + ++ H+ ++ ++ LT ++
Sbjct: 9 VVELLKTTIAFFAEKKIDEPRLSAELLLGHVLGLQRLQ--LYLDHERPLTLKELEAFRAA 66
Query: 86 CECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSN----HTPT 141
C RL PVQYI E F + V IPR ETE +++ ++L +S +P+
Sbjct: 67 CRERLQGRPVQYIAGEAFFYGYQFFVDERVLIPRPETELVLEHAMERLAASGLDSADSPS 126
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
++++G+G+G I I+L P + A D S A D+ +NA H V+ +++ A+ S
Sbjct: 127 -ILDVGTGSGCIAITLALRLPGARVTAADVSADALDVARRNADAHGVSERIRFVEADALS 185
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
D + FDL+VSNPPY+P + L+ E+ YE AL G + I
Sbjct: 186 ASFA-----DAVGGPFDLLVSNPPYIPEAEWATLQEEVRRYEPRLALV-APTGFEYYQSI 239
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDR 314
V + L+ G + E + D +++ LG V+ +D+N DR
Sbjct: 240 AVAAPSLLRKGGVLCFELHADGAAEVRNLLG-----SSFADVQVMQDYNKLDR 287
>sp|A9WBM9|PRMC_CHLAA Release factor glutamine methyltransferase OS=Chloroflexus
aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl)
GN=prmC PE=3 SV=1
Length = 283
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/267 (29%), Positives = 125/267 (46%), Gaps = 22/267 (8%)
Query: 52 IMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKM 111
++AHI ++ + E++ LT +Q N L E R R PV Y+I F L L +
Sbjct: 28 LLAHILGWSRAK--VVAERDHVLTPEQEMAFNALIERRANREPVAYLIGHREFFGLDLFV 85
Query: 112 TPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
V IPR ETE L+++ + + NHTP + +IG+G+GAI I+L H P +D
Sbjct: 86 DRRVLIPRPETELLVELTLKEAQRFNHTPLIIADIGTGSGAIAIALAMHLPHALIYGVDI 145
Query: 172 SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLD 231
S A + N + + +++++ ++ + L D++VSNPPY
Sbjct: 146 SPDALAVAAINVTRYRLDDRIRLLEGDLCTP----------LPAPVDILVSNPPYT---I 192
Query: 232 IPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWL 291
+ +++ + +E ALDGG DGL+ + + YLKPNG+I LE + L
Sbjct: 193 LTEIDEGVYRHEPHLALDGGSDGLDCYRRLIAAAPTYLKPNGAILLEIGSTQAASVVHLL 252
Query: 292 GICGHHMKLKLVENY--KDFNNKDRFV 316
L + E +D DR V
Sbjct: 253 -----RQALPMAETGIERDLAGHDRIV 274
>sp|A0R213|PRMC_MYCS2 Release factor glutamine methyltransferase OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=prmC PE=3
SV=1
Length = 281
Score = 114 bits (285), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 23/243 (9%)
Query: 77 DQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESS 136
+ + L R R+P+Q+++ F LTL++ P VFIPR ETE L++ +
Sbjct: 51 EALAAFEHLVAARAKRIPLQHLVGTAAFGPLTLEVGPGVFIPRPETESLLEWAVAQQLPR 110
Query: 137 NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196
+ ++++ +GTGA+ ++L +H P+ + IA++ S A + NA ++V
Sbjct: 111 DAV---IVDLCTGTGALALALAQHRPQARVIAVEDSPAALEYARCNA----AGTSVEVLA 163
Query: 197 AEIDSKGQVKNLQPDLLEQ---KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHD 253
A++ + PDLL + DLVVSNPPY+P + +L+PE+A ++ AL GG D
Sbjct: 164 ADVTA--------PDLLPELDGAVDLVVSNPPYIP--EGAELDPEVADHDPAHALFGGPD 213
Query: 254 GLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKD 313
G+ +I+PI + +L+ G +E HD + H V D +
Sbjct: 214 GMAVIRPIVALAARWLRDGGKCAVE--HDDTTSARTVEAFT-HDGNFTDVTARHDLTGRP 270
Query: 314 RFV 316
RFV
Sbjct: 271 RFV 273
>sp|Q1RH40|RFTRM_RICBR Bifunctional methyltransferase OS=Rickettsia bellii (strain
RML369-C) GN=prmC/trmB PE=3 SV=1
Length = 556
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 88/322 (27%), Positives = 152/322 (47%), Gaps = 41/322 (12%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
+ L E K + I P+ + ++ H N K + + +L +I + K+
Sbjct: 5 IQKFLNEGAYKLQHIGINNPKLEARILLQHAIN--KPYEYLLANPEKQLNQLEIEAVEKV 62
Query: 86 CECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDII---------------- 129
E RL P+ YI+ F + V IPR++TE LID++
Sbjct: 63 LERRLKHEPIAYILGTKEFYSREFIVNKHVLIPRNDTEILIDVVLQYHSQHSLCHSSNGG 122
Query: 130 ---TDKLES-----SNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
+L+S +N + ++E+G+G+G I+ISLL P + A D S A ++ +
Sbjct: 123 NPDKKQLDSVVKPRNNIKSSNILELGTGSGCISISLLLELPNSQITATDISIDAIEVAKS 182
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIAL 241
NA+ H+V ++LQ+ H+ N ++ +QKFDL+VSNPPY+ + P++ E
Sbjct: 183 NAIKHDVTDRLQIIHS---------NWFENIGKQKFDLIVSNPPYISINEKPEMAIETIN 233
Query: 242 YEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLK 301
YE AL DGL K I +LK NG I LE + D++ + G+
Sbjct: 234 YEPSIALFAEEDGLLSYKIIAENAKKFLKQNGKIILEIGYKQADQVSQIFLDHGY----- 288
Query: 302 LVEN-YKDFNNKDRFVELKLVE 322
+++N ++D + +R +E+ L++
Sbjct: 289 VIDNIHQDLQSHNRVIEISLIQ 310
>sp|Q4UJU4|RFTRM_RICFE Bifunctional methyltransferase OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=prmC/trmB PE=3 SV=1
Length = 527
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/316 (26%), Positives = 146/316 (46%), Gaps = 40/316 (12%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
+ VL + + K + I + + ++ ++ N K + ++ + +L +I KL
Sbjct: 5 IKQVLSKASDKLNKIGISSSQLEARILLRYVIN--KPIEYLLINLDEQLNEVEIEAFEKL 62
Query: 86 CECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDI----------------- 128
E RL P+ YII F + V IPR++TE L+D+
Sbjct: 63 LERRLKHEPIAYIIGIKEFYSREFIVNKHVLIPRADTEVLVDVCVHKSSLRATKRSVAIS 122
Query: 129 -ITDKLESS-------NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180
I K+ SS N T+++E+G+G+G I ISLL P + +A D S A ++
Sbjct: 123 GILSKIASSTPMASSRNDEYTKILELGTGSGCIAISLLCELPNARVVATDISLDAIEVAR 182
Query: 181 QNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIA 240
NA+ ++V +++Q+ H+ N +L +QKFD++VSNPPY+ + + P++ E
Sbjct: 183 NNALKYHVTDRIQIIHS---------NWFENLGKQKFDVIVSNPPYISTDEKPEMALETL 233
Query: 241 LYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKL 300
+E AL DGL + I +LKPNG I LE + + + G++++
Sbjct: 234 NHEPYIALFAEEDGLQAYRIIAENAKKFLKPNGKIVLEIGFKQEEAVTQIFLSNGYNIE- 292
Query: 301 KLVENYKDFNNKDRFV 316
YKD R +
Sbjct: 293 ---SVYKDLQGHSRVI 305
>sp|Q8DPZ3|PRMC_STRR6 Release factor glutamine methyltransferase OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=prmC PE=3 SV=1
Length = 279
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 121/234 (51%), Gaps = 34/234 (14%)
Query: 91 ARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDII-TDKLESSNHTPTRMIEIGSG 149
A P QYII + +F + LK+ V IPR ETEEL+++I T+ LE T +++IG+G
Sbjct: 65 AHKPAQYIIGQADFYGMHLKVDERVLIPRPETEELVELILTENLE----TNLSVLDIGTG 120
Query: 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ 209
+GAI ++L K+ P A D S+ A DL +NA N LQ+F + D ++
Sbjct: 121 SGAIALALAKNRPDWSVTAADISQEALDLARENAKNQN----LQIFLKKSDCFTEIS--- 173
Query: 210 PDLLEQKFDLVVSNPPYVP-------SLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262
+K+D++VSNPPY+ L++ EP +AL+ D DGL I + I
Sbjct: 174 -----EKYDIIVSNPPYISREDESEVGLNVLYSEPHLALFAD-------EDGLAIYRRIA 221
Query: 263 VFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
++YLK +G I+LE + + E + H+ K V KD ++R V
Sbjct: 222 EDATDYLKDSGKIYLEIGYKQGQCVPE---LFRKHLPEKRVRTLKDQFGQNRMV 272
>sp|O66506|PRMC_AQUAE Release factor glutamine methyltransferase OS=Aquifex aeolicus
(strain VF5) GN=prmC PE=3 SV=1
Length = 281
Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 82/244 (33%), Positives = 118/244 (48%), Gaps = 17/244 (6%)
Query: 73 ELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDK 132
E+ + + K + R +P Y+I EW K+ V +PR ETE LI+ +
Sbjct: 49 EIPEEIVKRFFKQMKERKKGIPTAYVIGEWECMGRVFKVKKGVLVPRPETEILIERTLEL 108
Query: 133 LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQL 192
+ E+GSGTG I+I+LL PKL A D + A +LT++NA +H V ++L
Sbjct: 109 IPQDREMVG--FELGSGTGCISINLLIERPKLVMYATDVNPDAVELTKENAKLHKVDDRL 166
Query: 193 QVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH 252
VF ++ VK + KFD +VSNPPY+P + ++ PE E +L GG
Sbjct: 167 FVFLG--NAFEPVKGM-------KFDFIVSNPPYIPE-NFWEILPEEVKKEGYTSLIGGK 216
Query: 253 DGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNK 312
G + I G+ +LK NG I LE HD +KE L K V +KD+
Sbjct: 217 KGWEFYELIAEEGTKHLKENGFIALEIGHDQGKVVKELL-----EKKCFKVNIFKDYAGF 271
Query: 313 DRFV 316
DR V
Sbjct: 272 DRVV 275
>sp|Q97F67|PRMC_CLOAB Release factor glutamine methyltransferase OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=prmC PE=3 SV=1
Length = 285
Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 80/289 (27%), Positives = 144/289 (49%), Gaps = 22/289 (7%)
Query: 28 NVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCE 87
+VLKE +F E+S Q +++++ +I I + E+ + +
Sbjct: 12 SVLKETNDEFYM------EDS-QILLSYVLKKDRI--FLITNREYEIEENSLKQYFDYIN 62
Query: 88 CRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIG 147
R +MP++YI ++ F L + V IPR +TE L++ + + +E +N+ ++ ++
Sbjct: 63 MRKKKMPIRYITEKCEFMGLDFHVEKGVLIPRPDTEILVEAVLEYIELNNYK--KVCDVC 120
Query: 148 SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207
+G+GAI +S+ K+ ++ + D S A +++ N N+ +++++ + ++ K
Sbjct: 121 TGSGAIGLSIAKYAKDVEVLCSDISPDAIRVSKINRQGLNLEDRVKIENGDLLEK----- 175
Query: 208 LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSN 267
P +KFD+VVSNPPY+ +IPKL ++ YE I AL GG DGL+ + I
Sbjct: 176 --PIERGEKFDIVVSNPPYIREDEIPKLMDDVKDYEPIIALVGGEDGLDFYRRITSMSKK 233
Query: 268 YLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
LKP G I E D +++ L + +E KDF DR V
Sbjct: 234 VLKPGGLIAYEIGSDEANEVSNIL----ENEGFVSIETRKDFARMDRVV 278
>sp|Q2RFW1|PRMC_MOOTA Release factor glutamine methyltransferase OS=Moorella
thermoacetica (strain ATCC 39073) GN=prmC PE=3 SV=1
Length = 283
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/288 (25%), Positives = 134/288 (46%), Gaps = 19/288 (6%)
Query: 28 NVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCE 87
L E + + P + ++ + T+ + +E+ EL + +
Sbjct: 5 QALGEAVRRLAAGGVERPRLEAEVLLGWACSLTRPRLLARLEE--ELAPAAAGRFWQAID 62
Query: 88 CRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLES-SNHTPTRMIEI 146
R A P+QY+ F L K+TP V IPR +TE +++ + ++L+ ++T + +
Sbjct: 63 RRAAGYPLQYLTGHQEFMSLDFKVTPAVLIPRQDTEVVVEAVLERLDPCESYT---IADC 119
Query: 147 GSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206
G+G+GAI +SL + P+ + A D S A + ++NA +A ++ + +
Sbjct: 120 GTGSGAIALSLAHYLPRARVYATDISPAALTVAQENARKLGLAARVTLLQGDF------- 172
Query: 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGS 266
L P L K D +V+NPPY+P+ +P L P E ALDGG DGL+ + + +
Sbjct: 173 -LAP-LRGLKLDALVANPPYIPTAALPGL-PADVRSEPRLALDGGPDGLDAYRFLLPGAA 229
Query: 267 NYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDR 314
L+P G + LE D +K+ G + +++ D+ +DR
Sbjct: 230 GLLRPGGLLALEIGSDQGQAVKDLARAVGAYRNEQVL---PDYAGRDR 274
>sp|A9CG70|PRMC_AGRT5 Release factor glutamine methyltransferase OS=Agrobacterium
tumefaciens (strain C58 / ATCC 33970) GN=prmC PE=3 SV=1
Length = 289
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/286 (24%), Positives = 132/286 (46%), Gaps = 18/286 (6%)
Query: 36 KFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPV 95
+ + A + +P + ++A + + D +++ +T D+ + + E R PV
Sbjct: 19 RLQAAGVADPLVDARLLIADVTGFSLTD--FVMKPEHPVTQDESARIAAMIERRAEGEPV 76
Query: 96 QYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLES--SNHTPTRMIEIGSGTGAI 153
I+ F L L ++ PR +TE L+D + L+ S R++++G+GTGAI
Sbjct: 77 HRILGHREFHGLDLLLSKETLEPRPDTEVLVDTLLPALKEAVSRKGSARILDLGTGTGAI 136
Query: 154 TISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLL 213
++LLK + I D S A + +NA + + ++ + + K +
Sbjct: 137 CLALLKECAQASGIGSDISADALETAAKNAARNGLDSRFETIRSNWFEK----------I 186
Query: 214 EQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273
+FD++VSNPPY+ + + L+PE+ ++ + ALDGG DGL + I +L NG
Sbjct: 187 SGRFDIIVSNPPYIRTDIVATLDPEVRNHDPMAALDGGQDGLAPYRLIAADAGRFLVENG 246
Query: 274 SIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELK 319
++ +E D + G L++ KD+ DR + +
Sbjct: 247 TVGVEIGFDQRLDVSAIFASHG----FSLLDAVKDYGGNDRVLTFR 288
>sp|Q2RWE0|PRMC_RHORT Release factor glutamine methyltransferase OS=Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255) GN=prmC PE=3 SV=1
Length = 325
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/296 (25%), Positives = 130/296 (43%), Gaps = 25/296 (8%)
Query: 22 KANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITH 81
A V+ +L + + A + +P + + H+ + ++ + +T ++
Sbjct: 21 SALVLGRLLDRGAWRLKVAGVEKPRRDARLLAGHVLGLSP--GAVLLADDRVVTPEEAQA 78
Query: 82 LNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPT 141
L + R R PV I+ F L + PR +TE L++ LE
Sbjct: 79 LEAVIARRETREPVSRILGHRGFWRFDLALGADTLDPRPDTETLVEAGLAVLEGCGG--- 135
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++++G+G+G I ++LL P + ID + A + +NA + + + A D
Sbjct: 136 RILDLGTGSGCILLALLADRPGAIGLGIDIAPGAVRVALRNA--RALGLERRALFAVGDW 193
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
V FDL+VSNPPY+PS DI LEPE+A ++ +ALDGG DGL+ + +
Sbjct: 194 AAAVAG--------PFDLIVSNPPYIPSADIAALEPEVARFDPSRALDGGADGLDPYRIL 245
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWL---GICGHHMKLKLVENYKDFNNKDR 314
L P G + +E + L G+C + +K KD + ++R
Sbjct: 246 AAQVPALLAPAGVLAVEFGQGQARDVAGLLEVGGLCPYEIK-------KDLSGEER 294
>sp|Q87DF7|PRMC_XYLFT Release factor glutamine methyltransferase OS=Xylella fastidiosa
(strain Temecula1 / ATCC 700964) GN=prmC PE=3 SV=1
Length = 275
Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 17/233 (7%)
Query: 82 LNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPT 141
L E R +PV Y+I F L + ++ IPR+ETE L++ +L+ ++
Sbjct: 51 FQALVEQRARGIPVAYLIGRRGFWTLDVIVSSATLIPRAETETLVEQALQRLDHASE--R 108
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R+ ++G+G+GAI +++ P+ + +A D S A D+ +NA H + N + VF
Sbjct: 109 RVADLGTGSGAIALAIACERPQAQVLATDNSAAALDIAARNASAHGL-NHV-VF------ 160
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
+ N LL ++FDL+VSNPPY+ D P L +E AL G DGL+ ++ +
Sbjct: 161 --REGNWYEALLGERFDLIVSNPPYIAVTD-PHLTQGDLRFEPPSALISGGDGLDALRIL 217
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDR 314
+L+P G + LE D ++ L H L V +D +DR
Sbjct: 218 AAGAPAHLRPGGWLVLEHGWDQGAAVRTLL----HTAGLVAVATMQDLEARDR 266
>sp|Q92G13|RFTRM_RICCN Bifunctional methyltransferase OS=Rickettsia conorii (strain ATCC
VR-613 / Malish 7) GN=prmC/trmB PE=3 SV=1
Length = 524
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/313 (26%), Positives = 135/313 (43%), Gaps = 37/313 (11%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
+ +L + T K + I P+ + ++ H+ N K + ++ + +L +I KL
Sbjct: 5 IKQILSDATDKLNKIGISSPQLEARILLQHVIN--KPIEYLLINLDEQLNEAKIEAFEKL 62
Query: 86 CECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDII---------------- 129
RL P+ YI F + V IPRS+TE L+D++
Sbjct: 63 LARRLKHEPIVYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQP 122
Query: 130 ------TDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183
D E+ N ++E+G+G+G I ISLL P IA D S A D+ + NA
Sbjct: 123 NPCFRGNDISENCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIDIIKSNA 182
Query: 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYE 243
+ V +++Q+ H+ N ++ QKFD +VSNPPY+ + ++ E YE
Sbjct: 183 AKYEVTDRIQIIHS---------NWFENIETQKFDFIVSNPPYIAHSEKSEMAIETINYE 233
Query: 244 DIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLV 303
AL DGL I +LKPNG I LE + + + G++++
Sbjct: 234 PSIALFAEKDGLQAYFLIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYNIE---- 289
Query: 304 ENYKDFNNKDRFV 316
YKD R +
Sbjct: 290 SVYKDLQGHSRVI 302
>sp|Q9PD67|PRMC_XYLFA Release factor glutamine methyltransferase OS=Xylella fastidiosa
(strain 9a5c) GN=prmC PE=3 SV=1
Length = 275
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 114/233 (48%), Gaps = 17/233 (7%)
Query: 82 LNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPT 141
L E R +PV Y+I F L + ++ IPR+ETE L++ +L+ ++
Sbjct: 51 FQALVEQRARGIPVAYLIGRRGFWTLDVMVSSATLIPRAETETLVEQALQRLDHASE--R 108
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R+ ++G+G+GAI +++ P+ + +A D S A D+ +NA H + N + VF
Sbjct: 109 RVADLGTGSGAIALAIACERPQAQVLATDNSAAALDIAARNASAHGL-NHV-VF------ 160
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
+ + LL ++FDL+VSNPPY+ D P L +E AL G DGL+ ++ +
Sbjct: 161 --REGDWYEALLGERFDLIVSNPPYIAVTD-PHLTQGDLRFEPPSALISGGDGLDALRIL 217
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDR 314
YL+P G + +E D ++ L H L V +D +DR
Sbjct: 218 TAGAPAYLRPGGWLVMEHGWDQGAAMRTLL----HTAGLVAVATVQDLEARDR 266
>sp|Q8G3P4|PRMC_BIFLO Release factor glutamine methyltransferase OS=Bifidobacterium
longum (strain NCC 2705) GN=prmC PE=3 SV=1
Length = 294
Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/298 (26%), Positives = 141/298 (47%), Gaps = 15/298 (5%)
Query: 25 VVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKID-DVTIVEKNTELTNDQITHLN 83
++ +++ + +++ +A I PE+ + ++A D D ++ T Q+
Sbjct: 2 LITDIINQASSQLREAGIETPEHDAKLLLAEAAGVELRDVDRALLMGEELGTTGQLAVFR 61
Query: 84 KLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRM 143
+ + R R P+QYI FR L LK+ P VFIPR ETE ++ D L + +
Sbjct: 62 AMLDRRAKREPLQYITGHAPFRYLDLKVGPGVFIPRPETETVVQAGLDWLTKNGMIHPCV 121
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQV----FHAEI 199
+++ +G+GAI +S++ P + A++ S + + T +N + A + +H EI
Sbjct: 122 VDLCAGSGAIGLSVVSEVPGSQVWAVELSPNTAEWTRRN--LSETAKKYPSIASNYHLEI 179
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH-DGLNII 258
L L+ D+V++NPPYVP DIP+ +PE+ ++ AL GG DG I
Sbjct: 180 ADATSFATLAQ--LDGTVDIVITNPPYVPQTDIPE-QPEVRDWDPELALYGGSMDGTLIP 236
Query: 259 KPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
+ I LKP G + +E + D++ + G +D+ +DR++
Sbjct: 237 ERIIERACRLLKPGGVLVMEHDVTQGDRLVAFARATG----FAAASTGQDWTGRDRYL 290
>sp|Q1II29|PRMC_KORVE Release factor glutamine methyltransferase OS=Koribacter versatilis
(strain Ellin345) GN=prmC PE=3 SV=1
Length = 280
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 74/269 (27%), Positives = 124/269 (46%), Gaps = 18/269 (6%)
Query: 21 TKANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQIT 80
T D+ LK E A P P S + ++ N + T E+ ELT D+
Sbjct: 2 TLKQAFDSALKH----LEAADTPSPRLSAELLLMFSLNCDRAYLFTYPER--ELTADEQA 55
Query: 81 HLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTP 140
++ R P QYI F ++P V IPR ETE LI+ + + +
Sbjct: 56 RYDEAIARRCHGEPAQYITGHQEFYGRDFLVSPAVLIPRPETEHLIEAVLEL--APREVR 113
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200
++++G+G+G I +L K FP++K A+D S A + + NA + +V
Sbjct: 114 WEVLDVGTGSGCIAATLAKEFPRMKVTAVDISPEALQIAQANAARLEAQVEFRV------ 167
Query: 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKP 260
+ ++P ++FD++VSNPPYV + K++ ++ +E A+ GG G++IIK
Sbjct: 168 -SDLLSAIEPG---RQFDMIVSNPPYVGECEADKVQRQVKDFEPHCAVFGGERGMDIIKR 223
Query: 261 ICVFGSNYLKPNGSIFLETNHDHLDKIKE 289
+ +LKP G +E + D + E
Sbjct: 224 LAPQVWEHLKPGGWFLMEIGYSIADPVHE 252
>sp|Q8PC99|PRMC_XANCP Release factor glutamine methyltransferase OS=Xanthomonas
campestris pv. campestris (strain ATCC 33913 / NCPPB 528
/ LMG 568) GN=prmC PE=3 SV=1
Length = 283
Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 114/239 (47%), Gaps = 19/239 (7%)
Query: 77 DQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESS 136
+Q L E R PV Y+ F L L ++ IPR++TE L+++ ++LE +
Sbjct: 52 EQAQRFGALVERRHQGEPVAYLTGSRGFWTLDLAVSTATLIPRADTETLVELALERLELT 111
Query: 137 NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN-QLQVF 195
R++++G+G+GAI +++ P+ + IA D S A + NA H + N + ++
Sbjct: 112 --AGVRVVDLGTGSGAIALAIASERPQAQLIATDASADALAIARHNAHAHGLHNVECRLG 169
Query: 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL 255
H LQP L ++FDL+ SNPPY+ + D P L+ YE AL G DGL
Sbjct: 170 H----------WLQP-LAGERFDLIASNPPYIAAAD-PHLQQGDLRYEPASALASGSDGL 217
Query: 256 NIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDR 314
+ I+ I +L G + LE D + + L G V ++D +DR
Sbjct: 218 DDIRLIVADTPAHLLAGGWLLLEHGWDQGEAVAALLIARG----FAAVATHQDLEQRDR 272
>sp|Q9CHX0|PRMC_LACLA Release factor glutamine methyltransferase OS=Lactococcus lactis
subsp. lactis (strain IL1403) GN=prmC PE=3 SV=1
Length = 270
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 125/249 (50%), Gaps = 24/249 (9%)
Query: 74 LTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKL 133
+T+ ++ L ++ + P QYI+ FRDL LK+ V IPR ETEEL+++I L
Sbjct: 43 ITDQELKLLTEVSKRLHQNEPPQYIVGWAEFRDLKLKVDERVLIPRPETEELVEMI---L 99
Query: 134 ESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQ 193
+ ++++IG+G+GAI ISL + A D SK A L +NA + N AN
Sbjct: 100 AENEKDSLKILDIGTGSGAIAISLAQARENWSVKASDISKEALTLAAENAEI-NQAN--- 155
Query: 194 VFHAEIDSKGQVKNLQPDLLEQ---KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDG 250
++ +Q D+L++ FD++VSNPPY+ + +++ + YE AL
Sbjct: 156 -----------LEFIQSDVLDKITDSFDIIVSNPPYIAFDETYEMDNSVIKYEPDLALFA 204
Query: 251 GHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFN 310
+ GL I + I N+L NG I+LE + ++ I KLV ++D
Sbjct: 205 ENQGLAIYQKIADQAVNHLTDNGKIYLEIGYKQGQAVQ---AIFQEKFTDKLVSIHQDIF 261
Query: 311 NKDRFVELK 319
KDR + +K
Sbjct: 262 GKDRMISVK 270
>sp|Q9K4E3|PRMC_STRCO Release factor glutamine methyltransferase OS=Streptomyces
coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=prmC
PE=3 SV=1
Length = 281
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/286 (25%), Positives = 133/286 (46%), Gaps = 20/286 (6%)
Query: 34 TAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARM 93
T + A +P P + + A++ + + T+ + + + ++ R AR
Sbjct: 12 TQRLADAGVPSPRTDAEELAAYLHGVKRGELHTVPDADFD------ARYWEVVARREARE 65
Query: 94 PVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAI 153
P+Q+I FR L L++ P VF+PR ETE ++ D + + + ++++ +G+GAI
Sbjct: 66 PLQHITGRAYFRYLELQVGPGVFVPRPETESVVGWAIDAVRAMDVVEPCIVDLCTGSGAI 125
Query: 154 TISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLL 213
++L + P+ + A++ S+ A T +N M L+ +G PD L
Sbjct: 126 ALALAQEVPRSRVHAVELSEDALKWTRRN--MEGSRVDLR--------QGDALTAFPD-L 174
Query: 214 EQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273
+ + DLVVSNPPY+P + + PE ++ AL G DGL++I+ + L+P G
Sbjct: 175 DGQVDLVVSNPPYIPLTEWEYVAPEARDHDPELALFSGEDGLDLIRGLERTAHRLLRPGG 234
Query: 274 SIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELK 319
+ +E ++ W I ++ D NN+ RF +
Sbjct: 235 VVVVEHADTQGGQVP-W--IFTEERGWADAADHPDLNNRPRFATAR 277
>sp|Q5E6T2|PRMC_VIBF1 Release factor glutamine methyltransferase OS=Vibrio fischeri
(strain ATCC 700601 / ES114) GN=prmC PE=3 SV=1
Length = 284
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 72/270 (26%), Positives = 134/270 (49%), Gaps = 19/270 (7%)
Query: 45 PENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNF 104
P+ ++ H+ + + +T EK ++++++ + N L E RLA P+ YI+ F
Sbjct: 24 PQVDAAVLLCHVLDKPRSYLLTWPEKI--VSDEELGNFNALLERRLAGEPIAYIVGYREF 81
Query: 105 RDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKL 164
L LK++P IPR +TE L+++ D L + + ++++G+GTGAI +++ P L
Sbjct: 82 WSLPLKVSPTTLIPRPDTERLVEVALDHLTPNAQS---ILDLGTGTGAIALAIASEMPTL 138
Query: 165 KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNP 224
I +D A +L + NA ++++ N ++ + Q +P L KFD++VSNP
Sbjct: 139 NVIGVDYQDDAVELAKGNAKINHINN--------VEFR-QGSWFEPISLSDKFDIIVSNP 189
Query: 225 PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHL 284
PY+ D P L +E AL +G + + I G YL G + +E +
Sbjct: 190 PYIDGND-PHLSEGDVRFEPQTALVAEQNGFSDLIHIMQHGREYLLNGGWLMMEHGFEQG 248
Query: 285 DKIKEWLGICGHHMKLKLVENYKDFNNKDR 314
++++ + G+ V+ +D+ DR
Sbjct: 249 EQLRHFFEEHGYIN----VKTEQDYAGNDR 274
>sp|Q81JX2|PRMC_BACAN Release factor glutamine methyltransferase OS=Bacillus anthracis
GN=prmC PE=3 SV=1
Length = 283
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 133/286 (46%), Gaps = 18/286 (6%)
Query: 33 WTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLAR 92
W + F Q EN+ + ++ H+ T + ++ E+T +Q T + +
Sbjct: 9 WASSFLQEN-GRDENAGEIVLCHVLKTNRTG--LLMNMREEITAEQETSFTEFIHKHVEG 65
Query: 93 MPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESS-NHTPTRMIEIGSGTG 151
+P+QY+I F + + V IPR ETEELI + +++E + +IG+G+G
Sbjct: 66 IPIQYMIGHEMFYGRSFFVNEEVLIPRPETEELIVGVLERIERHFGDEKLHVADIGTGSG 125
Query: 152 AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD 211
AI+I+L L +D ++ + ++ ++NA + ++ +H ++ L P
Sbjct: 126 AISITLALENKNLHVYTVDIAQESIEVAKENA--KTLGAEVTFYHGDL--------LSPF 175
Query: 212 L-LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLK 270
QK D+VVSNPPY+P D L P + +E +AL GG DGL+ + N L+
Sbjct: 176 YETGQKLDVVVSNPPYIPEEDWRGLSPVVKEHEPKRALVGGEDGLDFYRRFMEELPNVLQ 235
Query: 271 PNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
+ E + +K L H +++V D N KDR V
Sbjct: 236 KKAIVAFEIGVGQGEDVKGLLQQAFPHAHVEVV---FDINGKDRMV 278
>sp|Q727D9|PRMC_DESVH Release factor glutamine methyltransferase OS=Desulfovibrio
vulgaris (strain Hildenborough / ATCC 29579 / NCIMB
8303) GN=prmC PE=3 SV=1
Length = 295
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/303 (25%), Positives = 123/303 (40%), Gaps = 27/303 (8%)
Query: 20 ATKANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQI 79
+T + +L+ + E A++ P S + I+ H + +ID + LT D+I
Sbjct: 5 STSHATLQGLLRHARQRLEAAEVDAPRLSAEIILCHALSLRRIDIM--------LTPDRI 56
Query: 80 TH------LNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKL 133
++L R P+ YI+ E F + P IPR ETE LI+ L
Sbjct: 57 VEEADCILFSELVARRATGEPLAYIVGEKEFFGRDFAVNPSTLIPRPETEHLIET---AL 113
Query: 134 ESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQ 193
ES P R ++ G+G+G I ++L L +A+D S A NA H VA +L
Sbjct: 114 ESLRSGPARFVDAGTGSGCIAVTLCAERADLSGLALDMSAPALATASHNARRHGVAQRLA 173
Query: 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHD 253
+ + L DL SNPPY+ + L E+ +E AL G
Sbjct: 174 FVRGDFTTS--------LLRSGSLDLYASNPPYISEAEYTGLSREVRDFEPRSALVPGDT 225
Query: 254 GLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKD 313
GL I + L+P+G + +E + + ++VE +D D
Sbjct: 226 GLEHAAAIIAEATRVLRPHGILLMEFGCMQGADMASLF--TPYSTLWEMVEVRRDLAGLD 283
Query: 314 RFV 316
RF+
Sbjct: 284 RFI 286
>sp|Q89XT8|PRMC_BRAJA Release factor glutamine methyltransferase OS=Bradyrhizobium
japonicum (strain USDA 110) GN=prmC PE=3 SV=1
Length = 297
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 107/226 (47%), Gaps = 11/226 (4%)
Query: 67 IVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELI 126
I + LT + + + + + R+A PV I+ F L +++ +PR +TE ++
Sbjct: 53 IAQAARLLTEAEASRIAQHAQRRIAGEPVARILGTREFWGLPFRLSDATLVPRPDTETVV 112
Query: 127 DIITDKLESSNHTPT-RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM 185
+ + T R+ +IG+G+GAI ++LL P + D S +A + NAV
Sbjct: 113 ERALELFREQKATQQPRIADIGTGSGAILLALLHDIPGAFGVGTDLSLNALETARGNAVT 172
Query: 186 HNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDI 245
+A++ + L FDL+VSNPPY+PS +IPKL E+ ++
Sbjct: 173 LGLADRSAFVACSYLAA----------LRGPFDLIVSNPPYIPSAEIPKLSLEVREHDPH 222
Query: 246 KALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWL 291
ALDGG+DG + + + + L P G++ +E I+ L
Sbjct: 223 LALDGGNDGYDAYRALIPQAAERLAPGGALIVEAGQGQARNIETLL 268
>sp|Q8R619|PRMC_FUSNN Release factor glutamine methyltransferase OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=prmC PE=3 SV=1
Length = 354
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 109/225 (48%), Gaps = 15/225 (6%)
Query: 92 RMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTG 151
R P+QYI+ EW F L KM+ V IPR++TE L++ +L P +++IGSG+G
Sbjct: 121 RKPLQYILGEWEFYGLPFKMSEGVLIPRADTEILVEQCI-QLMREVEEPN-ILDIGSGSG 178
Query: 152 AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD 211
AI+I++ ID ++ A L +N +++ + N V E + G+ L D
Sbjct: 179 AISIAVANELKSSSVTGIDINEKAIKLAIENKILNKIEN---VNFIESNLFGK---LDKD 232
Query: 212 LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP 271
K+DL+VSNPPY+ + L PE+ YE AL DGL+ K I YLK
Sbjct: 233 F---KYDLIVSNPPYISKDEYETLMPEVKNYEPQNALTDLGDGLHFYKEISKLAGEYLKD 289
Query: 272 NGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
G + E ++ + + L ++ KD+ DR +
Sbjct: 290 TGYLAFEIGYNQAKDVSKIL----QDNNFAILSIVKDYGGNDRVI 330
>sp|B8E004|PRMC_DICTD Release factor glutamine methyltransferase OS=Dictyoglomus turgidum
(strain Z-1310 / DSM 6724) GN=prmC PE=3 SV=1
Length = 282
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 129/248 (52%), Gaps = 20/248 (8%)
Query: 74 LTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKL 133
LT++++ L KL + R +P+ YII++ F D+ L + V IPRSETE LI++ D +
Sbjct: 49 LTDEEVEKLKKLLDLRKKGIPLNYIIEKKQFYDIELFVERGVLIPRSETEILIEVAKDTI 108
Query: 134 ESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQ 193
+ +++EIG G+G I+I+L K F +K A D S A + NA H V+++++
Sbjct: 109 LKEGY--KKIVEIGVGSGNISITLAKEFKDIKIYACDISPEAIKVARFNAKKHKVSDKIE 166
Query: 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHD 253
F + +N+ F+L++SNPPY+ S + P L+ E+ E KAL GG D
Sbjct: 167 FFFGFLLYPMVHRNVD-------FELIISNPPYIASWEFPFLQKEVKK-EPWKALYGGWD 218
Query: 254 GLNIIKPICVFGSNYLKPNGSIF---LETNHDHLDKIKEWLGICGHHMKLKLVENYKDFN 310
G + + LK G F LE + K+ L I + ++E+++D+
Sbjct: 219 GCEFYRKLFTL----LKKRGKNFTAILEISPYIYHKV---LNILKNFFDSVIIESFRDYL 271
Query: 311 NKDRFVEL 318
+R +++
Sbjct: 272 GHERVIKV 279
>sp|Q10602|PRMC_MYCTU Release factor glutamine methyltransferase OS=Mycobacterium
tuberculosis GN=prmC PE=3 SV=2
Length = 304
Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 35/243 (14%)
Query: 85 LCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTR-- 142
+ R R+P+Q++I +F + L + P VF+PR ETE ++ T + P R
Sbjct: 58 IVTARARRVPLQHLIGTVSFGPVVLHVGPGVFVPRPETEAILAWAT-----AQSLPARPL 112
Query: 143 MIEIGSGTGAITISLLKHFP----KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
+++ +G+GA+ ++L +H K + I ID S A D +NA +++ A+
Sbjct: 113 IVDACTGSGALAVALAQHRANLGLKARIIGIDDSDCALDYARRNAA----GTPVELVRAD 168
Query: 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII 258
+ + L P+L + + DL+VSNPPY+P D LEPE+A ++ AL GG DG+ +I
Sbjct: 169 VTTP----RLLPEL-DGQVDLMVSNPPYIP--DAAVLEPEVAQHDPHHALFGGPDGMTVI 221
Query: 259 KPICVFGSNYLKPNGSIFLE----TNHDHLDKIKEWLGICGHHMKLKL-VENYKDFNNKD 313
+ +L+P G +E T+ +D + KL + V+ KD +
Sbjct: 222 SAVVGLAGRWLRPGGLFAVEHDDTTSSSTVDLVSS--------TKLFVDVQARKDLAGRP 273
Query: 314 RFV 316
RFV
Sbjct: 274 RFV 276
>sp|A6H162|PRMC_FLAPJ Release factor glutamine methyltransferase OS=Flavobacterium
psychrophilum (strain JIP02/86 / ATCC 49511) GN=prmC
PE=3 SV=1
Length = 285
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 104/198 (52%), Gaps = 28/198 (14%)
Query: 94 PVQYIIKEWNFRDLTLKMTPPVFIPRSETEELID-IITDKLESSNHTPTRMIEIGSGTGA 152
P+QYI+ E F L + IPR ETEEL++ II + L+ S+ ++++IG+G+G
Sbjct: 70 PIQYILGETQFFGLPFYVNENTLIPRPETEELVEWIIKENLKISSLKNLKILDIGTGSGC 129
Query: 153 ITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN-LQPD 211
I ISL K+ P AID S A ++NAV++ E+D KN LQ +
Sbjct: 130 IAISLAKNLPNASVFAIDVSDKALATAQKNAVLN-----------EVDITFIEKNILQTE 178
Query: 212 LLEQKFDLVVSNPPYVPSLD-------IPKLEPEIALY-EDIKALDGGHDGLNIIKPICV 263
L Q+FD++VSNPPYV +L+ + + EP +AL+ ED +D L + I
Sbjct: 179 DLNQEFDIIVSNPPYVRNLEKKEIHKNVLEYEPHLALFVED-------NDSLLFYRKITE 231
Query: 264 FGSNYLKPNGSIFLETNH 281
+ L NG ++ E N
Sbjct: 232 LATRNLSNNGQLYFEINQ 249
>sp|Q814U1|PRMC_BACCR Release factor glutamine methyltransferase OS=Bacillus cereus
(strain ATCC 14579 / DSM 31) GN=prmC PE=3 SV=1
Length = 283
Score = 99.8 bits (247), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 130/285 (45%), Gaps = 16/285 (5%)
Query: 33 WTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLAR 92
W + F Q EN+ + ++ H+ + ++ E+T +Q + +
Sbjct: 9 WASSFLQEN-GRDENAGEIVLCHVLKVNRTG--LLMNMREEITEEQEKSFTEFIHKHVEG 65
Query: 93 MPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESS-NHTPTRMIEIGSGTG 151
+P+QY+I F + + V IPR ETEELI + +++E + +IG+G+G
Sbjct: 66 IPIQYMIGYEIFYGRSFFVNEEVLIPRPETEELIVGVLERIERHFGDEKLHVADIGTGSG 125
Query: 152 AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD 211
AI+I+L L +D ++ + ++ ++NA + ++ +H ++ S
Sbjct: 126 AISITLALENKNLHVYTVDIAQESIEVAKENA--KALGAEVTFYHGDLLSPFHKTG---- 179
Query: 212 LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP 271
QK D+VVSNPPY+P D L P + +E +AL GG DGL+ + N L+
Sbjct: 180 ---QKLDVVVSNPPYIPEEDWRGLSPVVKEHEPKRALVGGEDGLDFYRRFMEELPNVLQK 236
Query: 272 NGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
+ E + +K L H +++V D N KDR V
Sbjct: 237 KAIVAFEIGVGQGEDVKRLLQQAFPHAHVEVV---FDINGKDRMV 278
>sp|P45832|PRMC_MYCLE Release factor glutamine methyltransferase OS=Mycobacterium leprae
(strain TN) GN=prmC PE=3 SV=2
Length = 288
Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 129/291 (44%), Gaps = 25/291 (8%)
Query: 36 KFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPV 95
+ E+A I + + AH+ T + + E + R R+P+
Sbjct: 15 QLEEAGIGSARCDAEQLAAHLAGTDRGRLALLDTPGEEF----FRRYSDAVAARSRRVPL 70
Query: 96 QYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTR--MIEIGSGTGAI 153
Q++I +F + L + P VFIPR ETE ++ + + P R +++ +G+GA+
Sbjct: 71 QHLIGTVSFGPVVLHVGPDVFIPRPETEAILAWVM-----AQRLPERPVIVDACTGSGAL 125
Query: 154 TISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLL 213
++L H P + I ID S A D +NA ++ A++ + L P+ L
Sbjct: 126 AVALAHHRPAARVIGIDDSDSALDYARRNA----EGTAVECVRADVTTPA----LLPE-L 176
Query: 214 EQKFDLVVSNPPYVPSLDIPK--LEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP 271
+ DL V+NPPYVP + + LEPE+ Y+ A+ GG DG+ + I +L+P
Sbjct: 177 DGCVDLFVANPPYVPDDPVVQSILEPEVTQYDPRHAVFGGPDGMALTADIVGLAGRWLRP 236
Query: 272 NGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKLVE 322
G +E HD + L + V ++D + RFV + E
Sbjct: 237 GGLFAVE--HDDSTSVPT-LDLVYRTDLFDDVLTHRDLAGRPRFVTARRRE 284
>sp|Q8K9W9|PRMC_BUCAP Release factor glutamine methyltransferase OS=Buchnera aphidicola
subsp. Schizaphis graminum (strain Sg) GN=prmC PE=3 SV=1
Length = 275
Score = 98.2 bits (243), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 77/289 (26%), Positives = 136/289 (47%), Gaps = 23/289 (7%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
++ LK+ K + P E I +++H+ T+I I+ + +L+ +Q LN
Sbjct: 3 INYWLKKAIKKLSHCENPRYEAEI--LLSHVLKCTRI--AIIINQEIDLSKEQYQKLNNF 58
Query: 86 CECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIE 145
R P+ YII + F L+L ++ IPR +TE L++ I K+ N +++
Sbjct: 59 IYRRSIGEPIAYIIGKKEFWSLSLCVSYKTLIPRPDTEILVEKILSKV---NKNFRSILD 115
Query: 146 IGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205
+G+G+GAI ++L I +D S A + + N + N+ N ++ F++ S
Sbjct: 116 LGTGSGAIALALASVCSHWNIIGVDNSYSALKIAKINGLKLNLKN-VEFFYSNWFSH--- 171
Query: 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFG 265
+ +KF ++VSNPPY+ +I L+ +I YE AL DGL I+ I
Sbjct: 172 -------INEKFHIIVSNPPYIGIKEIQSLKKDI-FYEPFNALISKKDGLLDIELIIQKA 223
Query: 266 SNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDR 314
S YL G +F+E K++ + ++++KD+ DR
Sbjct: 224 SQYLFDKGWLFIEHGWKQKLKVQYFF----KKYNFFCIQSFKDYGGNDR 268
>sp|Q83AD8|PRMC_COXBU Release factor glutamine methyltransferase OS=Coxiella burnetii
(strain RSA 493 / Nine Mile phase I) GN=prmC PE=3 SV=1
Length = 277
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 114/248 (45%), Gaps = 29/248 (11%)
Query: 73 ELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDK 132
+L + Q L+ + RL P+ YI+ + F L LK+TP V IPR ETE L++ I
Sbjct: 48 QLNSSQQKTLSAYVKRRLKGEPIAYILGQKEFWSLNLKVTPDVLIPRPETEMLVEWILKN 107
Query: 133 LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQL 192
L R+ ++G+G+GA+ +++ P A D S+ A + E NA H + N
Sbjct: 108 LPKDEK--LRIADLGTGSGAVALAIAVERPHWTIDATDNSQAALKIAEINAKQHEIKN-C 164
Query: 193 QVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLD--IPKLEPEIALYEDIKALDG 250
+H E L + + +V NPPY+P D + +L+ +E +AL
Sbjct: 165 NFYHGEWCQA---------LPRRDYHAIVGNPPYIPDKDQHLQQLK-----HEPREALAA 210
Query: 251 GHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFN 310
G DGL+ IK I +YL G + LE +D +KI M L + Y++
Sbjct: 211 GSDGLSAIKIIIHEAKSYLVNGGWLLLEHGYDQAEKI----------MTLMQADGYREIT 260
Query: 311 NKDRFVEL 318
++ L
Sbjct: 261 DRRDLAGL 268
>sp|P0ACC2|PRMC_SHIFL Release factor glutamine methyltransferase OS=Shigella flexneri
GN=prmC PE=3 SV=1
Length = 277
Score = 97.8 bits (242), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 133/285 (46%), Gaps = 22/285 (7%)
Query: 30 LKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECR 89
L+E ++ + ++ P + I ++ H+ T + + T+LT++Q L+ L R
Sbjct: 7 LREAISQLQASESPRRDAEI--LLEHV--TGRGRTFILAFGETQLTDEQCQQLDALLTRR 62
Query: 90 LARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSG 149
P+ ++ F L L ++P IPR +TE L++ +L P R++++G+G
Sbjct: 63 RDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQ---PCRILDLGTG 119
Query: 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ 209
TGAI ++L P + IA+D+ A L ++NA H + + ++ S
Sbjct: 120 TGAIALALASERPDCEIIAVDRMPDAVSLAQRNA-QHLAIKNIHILQSDWFSA------- 171
Query: 210 PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL 269
L Q+F ++VSNPPY+ D P L+ +E + AL G+ I I N L
Sbjct: 172 --LAGQQFAMIVSNPPYIDEQD-PHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNAL 228
Query: 270 KPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDR 314
G + LE + +++ + G+H VE +D+ + +R
Sbjct: 229 VSGGFLLLEHGWQQGEAVRQAFILAGYHD----VETCRDYGDNER 269
>sp|P0ACC1|PRMC_ECOLI Release factor glutamine methyltransferase OS=Escherichia coli
(strain K12) GN=prmC PE=1 SV=1
Length = 277
Score = 97.8 bits (242), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 133/285 (46%), Gaps = 22/285 (7%)
Query: 30 LKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECR 89
L+E ++ + ++ P + I ++ H+ T + + T+LT++Q L+ L R
Sbjct: 7 LREAISQLQASESPRRDAEI--LLEHV--TGRGRTFILAFGETQLTDEQCQQLDALLTRR 62
Query: 90 LARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSG 149
P+ ++ F L L ++P IPR +TE L++ +L P R++++G+G
Sbjct: 63 RDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQ---PCRILDLGTG 119
Query: 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ 209
TGAI ++L P + IA+D+ A L ++NA H + + ++ S
Sbjct: 120 TGAIALALASERPDCEIIAVDRMPDAVSLAQRNA-QHLAIKNIHILQSDWFSA------- 171
Query: 210 PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL 269
L Q+F ++VSNPPY+ D P L+ +E + AL G+ I I N L
Sbjct: 172 --LAGQQFAMIVSNPPYIDEQD-PHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNAL 228
Query: 270 KPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDR 314
G + LE + +++ + G+H VE +D+ + +R
Sbjct: 229 VSGGFLLLEHGWQQGEAVRQAFILAGYHD----VETCRDYGDNER 269
>sp|Q32GZ5|PRMC_SHIDS Release factor glutamine methyltransferase OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=prmC PE=3 SV=1
Length = 277
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/285 (25%), Positives = 134/285 (47%), Gaps = 22/285 (7%)
Query: 30 LKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECR 89
L+E ++ + ++ P + I ++ H+ T K + T+LT++Q L+ L R
Sbjct: 7 LREAISQLQASESPRRDAEI--LLEHV--TGKGRTFILAFGETQLTDEQCQQLDALLTRR 62
Query: 90 LARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSG 149
P+ ++ F L L ++P IPR +TE L++ +L P R++++G+G
Sbjct: 63 RDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQALARLPEQ---PCRILDLGTG 119
Query: 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ 209
TGAI ++L + P + A+D+ A L ++NA H + + ++ S
Sbjct: 120 TGAIALALARERPDCEITAVDRMPDAVALAQRNA-QHLAIKNIHILQSDWFS-------- 170
Query: 210 PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL 269
+L Q+F ++VSNPPY+ D P L+ +E + AL G+ I I N L
Sbjct: 171 -ELAGQQFAMIVSNPPYIDEQD-PHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNAL 228
Query: 270 KPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDR 314
G + LE + +++ + G+H VE +D+ + +R
Sbjct: 229 VSGGFLLLEHGWQQGEAVRQAFILAGYHD----VETCRDYGDNER 269
>sp|Q7CIA2|PRMC_YERPE Release factor glutamine methyltransferase OS=Yersinia pestis
GN=prmC PE=3 SV=1
Length = 276
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 111/261 (42%), Gaps = 25/261 (9%)
Query: 57 FNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVF 116
F T K + TE+T +Q+ L L R P+ Y++ E F L L ++
Sbjct: 30 FVTGKARTYLLAFGETEITAEQLLWLETLANRREQGEPIAYLVGEREFWSLPLSVSSATL 89
Query: 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHAC 176
IPR +TE L++ +L + P R++++G+GTGAI ++L IA+D + A
Sbjct: 90 IPRPDTECLVEQALARLPA---MPCRILDLGTGTGAIALALATERRDCAVIAVDINADAV 146
Query: 177 DLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLE---QKFDLVVSNPPYVPSLDIP 233
L NA + N V LQ E +F L+ SNPPY+ + D P
Sbjct: 147 ALARHNAEKLTIDN--------------VCFLQGSWFEPVSGRFALIASNPPYIDAND-P 191
Query: 234 KLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGI 293
L YE AL +G+ + I YL P G + LE + ++E L
Sbjct: 192 HLNEGDVRYEPHSALVAAAEGMADLAAIVSQAPGYLDPGGWLMLEHGWQQANAVQELLKN 251
Query: 294 CGHHMKLKLVENYKDFNNKDR 314
G V KD+ N DR
Sbjct: 252 SG----FSAVMTCKDYGNNDR 268
>sp|Q9KQ26|PRMC_VIBCH Release factor glutamine methyltransferase OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=prmC PE=3 SV=1
Length = 286
Score = 96.3 bits (238), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 124/290 (42%), Gaps = 19/290 (6%)
Query: 25 VVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNK 84
++ LK T + +Q+ P ++ H+ + +T +K E + L
Sbjct: 4 TIEAALKAATEQLQQSGSDSPALDAAVLLCHVLAKPRSYLLTWPDKILE--KPTLASLEL 61
Query: 85 LCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMI 144
L R A P+ YI+ E F L LK++P IPR +TE L+++ DK + ++
Sbjct: 62 LLARRRAGEPMAYILGEREFWSLPLKVSPSTLIPRPDTERLVELALDK---AALIDGELL 118
Query: 145 EIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204
++G+GTGAI ++L P + ID A +L +NA + N Q F Q
Sbjct: 119 DLGTGTGAIALALASELPTRQVTGIDLRPEAAELARENATRLAIHNA-QFF--------Q 169
Query: 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVF 264
P KF L+VSNPPY+ D P L +E AL +GL I+ I
Sbjct: 170 GSWFSPLADGTKFALIVSNPPYIEEND-PHLSLGDVRFEPKSALVAAENGLADIRHISTH 228
Query: 265 GSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDR 314
++L G + E +D ++ L G+ + +D+ DR
Sbjct: 229 APHFLLDGGWLLFEHGYDQGVAVRTILRDLGYQN----IITEQDYAGHDR 274
>sp|Q7ULT2|PRMC_RHOBA Release factor glutamine methyltransferase OS=Rhodopirellula
baltica (strain SH1) GN=prmC PE=3 SV=1
Length = 296
Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 72/254 (28%), Positives = 123/254 (48%), Gaps = 17/254 (6%)
Query: 30 LKEWTAKFEQAKIPE-PENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCEC 88
L EWT F + K E P + ++AH +I+ T +K E +Q +L
Sbjct: 15 LLEWTTDFFRKKGSESPRLDAEILLAHARGCQRIELYTSFDKVPE--EEQRVAFRELVRR 72
Query: 89 RLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETE----ELIDIITDKLESSNHTPTRMI 144
R PV ++ F +++++ V +PR ETE E ID I +L S +PT ++
Sbjct: 73 RGEGAPVAQLVGYREFYSISIRVDENVLVPRPETEHLVIEAIDQIKGRL-SDRPSPT-VL 130
Query: 145 EIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204
+IG+G+GAI +++ K PK + A+D S A D+ + N +++++ + +++
Sbjct: 131 DIGTGSGAIAVAIAKSLPKTQVTAVDISLTALDIAKWNVENLKLSDRVTLLQSDL----- 185
Query: 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVF 264
L+PD Q FD++ SNPPY+ + +L + +E AL G DG II +
Sbjct: 186 FDGLEPD---QTFDVICSNPPYISQSEYDELPTTVREFEPRGALLSGPDGTEIIARLLND 242
Query: 265 GSNYLKPNGSIFLE 278
L G + +E
Sbjct: 243 SVQRLNDGGQLIIE 256
>sp|Q831F7|PRMC_ENTFA Release factor glutamine methyltransferase OS=Enterococcus faecalis
(strain ATCC 700802 / V583) GN=prmC PE=3 SV=1
Length = 277
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 109/227 (48%), Gaps = 17/227 (7%)
Query: 90 LARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSG 149
L P QY++ + F + + IPR ETEEL++ L+++ TP ++++G+G
Sbjct: 65 LTDYPAQYLLGQAEFYGHSFIVNEHTLIPRPETEELVERC---LKANPDTPLTVVDVGTG 121
Query: 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ 209
TGAI +SL P + IAID S+ A + +QNA + ++ +H LQ
Sbjct: 122 TGAIAVSLKLARPNWRVIAIDLSEEALTVAKQNA--QALGAGIEFYHG--------NGLQ 171
Query: 210 PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL 269
P + +K DL++SNPPY+ + ++ + YE AL ++GL + + + L
Sbjct: 172 P-VASEKIDLLISNPPYISEQEWYLMDASVRTYEPKTALFAENNGLALYQQLIHESQTML 230
Query: 270 KPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
K +G I+ E ++E L +K+ KD + DR
Sbjct: 231 KADGKIYFEIGFQQGAALQELLSAAYPQKTIKIE---KDLSGNDRLA 274
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 121,950,839
Number of Sequences: 539616
Number of extensions: 5245960
Number of successful extensions: 16906
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 370
Number of HSP's that attempted gapping in prelim test: 16330
Number of HSP's gapped (non-prelim): 571
length of query: 322
length of database: 191,569,459
effective HSP length: 117
effective length of query: 205
effective length of database: 128,434,387
effective search space: 26329049335
effective search space used: 26329049335
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)