Query psy7093
Match_columns 322
No_of_seqs 302 out of 2825
Neff 8.4
Searched_HMMs 46136
Date Fri Aug 16 17:59:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7093.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7093hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK01544 bifunctional N5-gluta 100.0 6.9E-55 1.5E-59 425.6 29.8 282 24-320 3-306 (506)
2 TIGR00536 hemK_fam HemK family 100.0 2.3E-54 5E-59 395.2 30.8 282 24-321 1-283 (284)
3 KOG2904|consensus 100.0 3.4E-54 7.4E-59 374.1 26.0 289 28-321 37-328 (328)
4 COG2890 HemK Methylase of poly 100.0 1.5E-52 3.2E-57 380.6 29.5 277 24-321 1-277 (280)
5 PRK14966 unknown domain/N5-glu 100.0 6E-51 1.3E-55 381.9 29.7 259 43-321 161-419 (423)
6 PRK11805 N5-glutamine S-adenos 100.0 3.4E-48 7.3E-53 356.9 29.9 261 20-295 10-278 (307)
7 TIGR03533 L3_gln_methyl protei 100.0 9.4E-48 2E-52 350.9 28.5 257 25-296 3-267 (284)
8 PRK09328 N5-glutamine S-adenos 100.0 1.6E-46 3.5E-51 342.1 29.4 275 23-320 1-275 (275)
9 TIGR03704 PrmC_rel_meth putati 100.0 2E-44 4.3E-49 323.4 26.1 242 35-310 3-244 (251)
10 TIGR03534 RF_mod_PrmC protein- 100.0 1.8E-39 4E-44 291.5 24.9 251 48-317 1-251 (251)
11 PLN02672 methionine S-methyltr 100.0 8.5E-37 1.9E-41 314.4 23.2 258 25-307 18-303 (1082)
12 PF05175 MTS: Methyltransferas 99.9 1.5E-23 3.3E-28 177.6 17.4 140 107-283 2-144 (170)
13 COG4123 Predicted O-methyltran 99.9 1.2E-21 2.6E-26 172.5 15.9 169 106-296 17-187 (248)
14 PRK14967 putative methyltransf 99.9 5.4E-21 1.2E-25 169.0 19.6 173 104-296 4-177 (223)
15 TIGR00537 hemK_rel_arch HemK-r 99.9 4.8E-20 1E-24 157.5 20.7 157 115-296 1-158 (179)
16 COG2813 RsmC 16S RNA G1207 met 99.8 6.6E-20 1.4E-24 164.6 18.3 173 105-320 127-299 (300)
17 PRK14968 putative methyltransf 99.8 3.7E-19 7.9E-24 152.6 20.5 181 112-318 2-184 (188)
18 PRK15001 SAM-dependent 23S rib 99.8 3.9E-19 8.5E-24 167.2 20.6 142 106-280 198-341 (378)
19 KOG3191|consensus 99.8 5.1E-19 1.1E-23 146.1 16.9 185 114-318 17-204 (209)
20 PRK11727 23S rRNA mA1618 methy 99.8 3.7E-18 8E-23 157.2 20.0 208 104-319 71-306 (321)
21 PF13659 Methyltransf_26: Meth 99.8 2.1E-19 4.6E-24 142.3 9.8 115 141-280 2-116 (117)
22 PRK10909 rsmD 16S rRNA m(2)G96 99.8 4E-18 8.7E-23 147.4 16.1 152 92-282 9-162 (199)
23 PRK13168 rumA 23S rRNA m(5)U19 99.8 8.6E-18 1.9E-22 162.9 20.0 184 73-296 216-417 (443)
24 PRK09489 rsmC 16S ribosomal RN 99.8 1.8E-17 3.9E-22 154.8 20.0 137 106-281 166-305 (342)
25 PLN02336 phosphoethanolamine N 99.8 8E-18 1.7E-22 164.8 15.8 159 68-279 207-369 (475)
26 PHA03411 putative methyltransf 99.7 7.7E-17 1.7E-21 144.1 15.4 133 141-296 66-207 (279)
27 TIGR00138 gidB 16S rRNA methyl 99.7 3.2E-16 6.8E-21 134.0 17.2 137 140-318 43-179 (181)
28 PF03602 Cons_hypoth95: Conser 99.7 3E-17 6.5E-22 140.2 9.6 146 104-282 8-156 (183)
29 PRK00107 gidB 16S rRNA methylt 99.7 1.1E-15 2.4E-20 131.1 18.8 139 140-320 46-186 (187)
30 PF12847 Methyltransf_18: Meth 99.7 3.2E-16 6.9E-21 123.0 13.1 110 140-279 2-111 (112)
31 COG2264 PrmA Ribosomal protein 99.7 1.6E-15 3.4E-20 137.2 18.5 156 106-308 130-289 (300)
32 TIGR01177 conserved hypothetic 99.7 8.9E-16 1.9E-20 143.4 17.2 146 118-295 163-308 (329)
33 TIGR00095 RNA methyltransferas 99.7 1E-15 2.2E-20 131.7 14.4 144 104-282 16-162 (189)
34 PRK11783 rlmL 23S rRNA m(2)G24 99.7 1.6E-15 3.4E-20 154.5 16.5 133 141-296 540-673 (702)
35 PHA03412 putative methyltransf 99.7 6.7E-16 1.4E-20 135.1 11.8 125 141-296 51-195 (241)
36 COG0742 N6-adenine-specific me 99.7 3.4E-15 7.4E-20 126.0 15.6 150 104-283 9-158 (187)
37 PRK08287 cobalt-precorrin-6Y C 99.7 6.8E-15 1.5E-19 126.5 17.4 132 123-296 17-149 (187)
38 TIGR00091 tRNA (guanine-N(7)-) 99.7 1.6E-15 3.5E-20 131.2 13.4 144 141-311 18-162 (194)
39 PF13847 Methyltransf_31: Meth 99.6 2.8E-15 6.2E-20 124.5 13.8 108 140-281 4-112 (152)
40 TIGR02085 meth_trns_rumB 23S r 99.6 7.5E-15 1.6E-19 139.3 17.8 147 104-291 198-346 (374)
41 TIGR00479 rumA 23S rRNA (uraci 99.6 5.9E-15 1.3E-19 142.8 17.3 166 92-296 241-413 (431)
42 PF06325 PrmA: Ribosomal prote 99.6 9.8E-15 2.1E-19 133.2 17.5 161 107-320 130-294 (295)
43 PRK10901 16S rRNA methyltransf 99.6 2.4E-14 5.2E-19 138.3 19.6 160 140-318 245-422 (427)
44 COG2226 UbiE Methylase involve 99.6 5E-15 1.1E-19 130.6 13.4 110 139-283 51-161 (238)
45 TIGR02752 MenG_heptapren 2-hep 99.6 4.6E-14 9.9E-19 125.2 19.3 153 127-320 35-231 (231)
46 PRK15128 23S rRNA m(5)C1962 me 99.6 3.4E-15 7.5E-20 142.0 12.4 129 141-292 222-354 (396)
47 PRK03522 rumB 23S rRNA methylu 99.6 2.9E-14 6.3E-19 132.4 18.0 147 104-291 138-286 (315)
48 PRK14902 16S rRNA methyltransf 99.6 1.5E-14 3.3E-19 140.4 16.4 139 141-295 252-399 (444)
49 PRK00121 trmB tRNA (guanine-N( 99.6 8E-15 1.7E-19 127.6 12.2 132 141-296 42-174 (202)
50 PRK00517 prmA ribosomal protei 99.6 8.2E-14 1.8E-18 125.2 18.9 147 107-307 88-238 (250)
51 PLN02490 MPBQ/MSBQ methyltrans 99.6 6.3E-14 1.4E-18 130.3 18.6 168 96-306 71-255 (340)
52 TIGR00406 prmA ribosomal prote 99.6 4.9E-14 1.1E-18 129.2 17.3 145 106-294 127-275 (288)
53 PLN02233 ubiquinone biosynthes 99.6 2.2E-13 4.7E-18 123.2 20.7 105 140-278 74-181 (261)
54 TIGR02469 CbiT precorrin-6Y C5 99.6 8.2E-14 1.8E-18 110.9 14.9 118 123-279 5-122 (124)
55 PF01170 UPF0020: Putative RNA 99.6 2.9E-14 6.3E-19 121.7 12.8 147 117-295 8-163 (179)
56 PRK13944 protein-L-isoaspartat 99.6 8.7E-14 1.9E-18 121.4 15.5 118 123-282 58-176 (205)
57 TIGR00563 rsmB ribosomal RNA s 99.6 2.2E-13 4.7E-18 131.6 19.7 146 140-295 239-388 (426)
58 COG2242 CobL Precorrin-6B meth 99.6 3.8E-13 8.3E-18 113.1 17.8 135 121-296 18-153 (187)
59 PRK00377 cbiT cobalt-precorrin 99.6 1.9E-13 4.2E-18 118.5 16.8 136 123-296 26-163 (198)
60 PF01209 Ubie_methyltran: ubiE 99.6 6.1E-14 1.3E-18 124.5 13.1 117 140-291 48-166 (233)
61 PRK14904 16S rRNA methyltransf 99.5 3.3E-13 7.1E-18 131.1 18.9 138 140-295 251-397 (445)
62 PLN02244 tocopherol O-methyltr 99.5 3.8E-13 8.3E-18 126.2 18.6 120 124-278 100-222 (340)
63 PF10672 Methyltrans_SAM: S-ad 99.5 1.4E-13 3.1E-18 124.8 15.1 160 104-294 90-255 (286)
64 PRK11188 rrmJ 23S rRNA methylt 99.5 7.4E-14 1.6E-18 122.1 11.7 142 140-314 52-196 (209)
65 TIGR00446 nop2p NOL1/NOP2/sun 99.5 2.6E-13 5.7E-18 122.9 15.5 138 140-294 72-218 (264)
66 PRK15451 tRNA cmo(5)U34 methyl 99.5 1.3E-13 2.9E-18 123.7 13.2 104 141-278 58-163 (247)
67 COG1092 Predicted SAM-dependen 99.5 1.5E-13 3.2E-18 129.5 13.9 120 141-283 219-340 (393)
68 PRK14903 16S rRNA methyltransf 99.5 2.1E-13 4.6E-18 131.5 14.9 143 140-295 238-386 (431)
69 TIGR00080 pimt protein-L-isoas 99.5 3.7E-13 8E-18 118.3 15.0 115 124-281 64-179 (215)
70 PRK05031 tRNA (uracil-5-)-meth 99.5 3.7E-13 8E-18 127.2 16.0 135 107-283 175-324 (362)
71 PRK11036 putative S-adenosyl-L 99.5 3.1E-13 6.7E-18 121.9 14.5 104 140-278 45-148 (255)
72 PRK14901 16S rRNA methyltransf 99.5 9.6E-13 2.1E-17 127.4 18.6 162 140-319 253-429 (434)
73 PRK14103 trans-aconitate 2-met 99.5 2.2E-13 4.8E-18 122.8 13.3 107 128-279 20-126 (255)
74 PF05971 Methyltransf_10: Prot 99.5 1.2E-12 2.6E-17 118.8 17.4 208 104-318 62-295 (299)
75 PLN02781 Probable caffeoyl-CoA 99.5 2.5E-13 5.5E-18 120.8 12.0 119 121-278 55-177 (234)
76 TIGR00477 tehB tellurite resis 99.5 5.2E-13 1.1E-17 115.6 13.5 101 141-278 32-132 (195)
77 PRK01683 trans-aconitate 2-met 99.5 5.3E-13 1.2E-17 120.4 14.1 112 127-281 21-132 (258)
78 PRK07402 precorrin-6B methylas 99.5 1.7E-12 3.6E-17 112.5 16.3 142 123-305 26-168 (196)
79 PRK14121 tRNA (guanine-N(7)-)- 99.5 1.1E-12 2.4E-17 123.2 15.7 127 141-294 124-251 (390)
80 COG1041 Predicted DNA modifica 99.5 9.1E-13 2E-17 120.8 14.3 135 116-280 176-311 (347)
81 PF08241 Methyltransf_11: Meth 99.5 2.6E-13 5.7E-18 102.5 9.1 95 144-277 1-95 (95)
82 PRK11207 tellurite resistance 99.5 9.8E-13 2.1E-17 114.0 13.8 101 141-277 32-132 (197)
83 COG2227 UbiG 2-polyprenyl-3-me 99.5 1.7E-13 3.8E-18 119.1 9.0 106 140-283 60-165 (243)
84 TIGR00452 methyltransferase, p 99.5 5.8E-12 1.3E-16 116.3 19.3 181 70-306 66-272 (314)
85 COG2263 Predicted RNA methylas 99.5 5.3E-12 1.2E-16 105.9 17.1 75 141-229 47-121 (198)
86 PRK11873 arsM arsenite S-adeno 99.5 2.3E-12 5.1E-17 117.2 16.4 127 140-305 78-228 (272)
87 smart00828 PKS_MT Methyltransf 99.5 1.7E-12 3.6E-17 114.6 15.0 120 141-295 1-136 (224)
88 KOG1271|consensus 99.5 6.3E-12 1.4E-16 104.4 16.8 146 122-295 48-197 (227)
89 PRK13942 protein-L-isoaspartat 99.5 2.3E-12 5.1E-17 113.0 15.3 116 123-281 62-178 (212)
90 TIGR00740 methyltransferase, p 99.5 1.6E-12 3.4E-17 116.1 14.2 105 140-278 54-160 (239)
91 PRK00216 ubiE ubiquinone/menaq 99.5 8.3E-12 1.8E-16 110.8 18.8 154 127-320 41-238 (239)
92 PLN02396 hexaprenyldihydroxybe 99.4 1.5E-12 3.2E-17 120.7 14.2 104 140-279 132-235 (322)
93 PF02384 N6_Mtase: N-6 DNA Met 99.4 8.6E-13 1.9E-17 122.3 12.4 159 124-295 33-205 (311)
94 PF02353 CMAS: Mycolic acid cy 99.4 7.9E-13 1.7E-17 119.9 11.9 116 126-279 51-166 (273)
95 COG2230 Cfa Cyclopropane fatty 99.4 1.5E-12 3.1E-17 117.1 13.1 115 126-278 61-175 (283)
96 TIGR02143 trmA_only tRNA (urac 99.4 4.1E-12 8.8E-17 119.7 16.4 144 107-292 166-324 (353)
97 smart00650 rADc Ribosomal RNA 99.4 7.8E-13 1.7E-17 111.8 10.4 112 127-280 3-114 (169)
98 PRK04457 spermidine synthase; 99.4 7.8E-12 1.7E-16 113.0 16.6 115 140-283 67-181 (262)
99 PRK00811 spermidine synthase; 99.4 8E-12 1.7E-16 114.3 16.8 148 140-320 77-237 (283)
100 PRK10258 biotin biosynthesis p 99.4 4.1E-12 9E-17 114.2 14.7 112 124-279 29-140 (251)
101 TIGR01934 MenG_MenH_UbiE ubiqu 99.4 1.6E-11 3.5E-16 107.8 18.1 151 127-320 29-223 (223)
102 PRK15068 tRNA mo(5)U34 methylt 99.4 2.1E-11 4.6E-16 113.4 19.6 183 70-306 67-273 (322)
103 PRK08317 hypothetical protein; 99.4 1.5E-11 3.2E-16 108.9 17.7 123 119-279 1-124 (241)
104 COG2265 TrmA SAM-dependent met 99.4 5.7E-12 1.2E-16 120.9 15.9 151 106-295 260-412 (432)
105 TIGR00438 rrmJ cell division p 99.4 1.9E-12 4.1E-17 111.4 11.5 142 140-315 33-178 (188)
106 PTZ00098 phosphoethanolamine N 99.4 9.7E-12 2.1E-16 112.6 16.7 115 126-278 41-155 (263)
107 PRK06922 hypothetical protein; 99.4 1.9E-12 4.2E-17 127.7 12.9 120 140-280 419-538 (677)
108 PRK12335 tellurite resistance 99.4 4.3E-12 9.3E-17 116.4 13.7 101 141-278 122-222 (287)
109 PF13649 Methyltransf_25: Meth 99.4 5.2E-13 1.1E-17 103.0 6.1 97 143-273 1-101 (101)
110 PRK00312 pcm protein-L-isoaspa 99.4 1E-11 2.3E-16 108.8 15.0 111 125-280 66-176 (212)
111 TIGR02716 C20_methyl_CrtF C-20 99.4 2E-11 4.2E-16 113.1 17.5 101 141-277 151-252 (306)
112 PLN02476 O-methyltransferase 99.4 4.1E-12 8.9E-17 114.7 12.1 121 119-278 103-227 (278)
113 TIGR03587 Pse_Me-ase pseudamin 99.4 5.7E-12 1.2E-16 109.8 12.5 111 97-225 1-114 (204)
114 TIGR02987 met_A_Alw26 type II 99.4 1.2E-11 2.7E-16 122.6 16.3 173 114-295 5-217 (524)
115 PF01596 Methyltransf_3: O-met 99.4 2.4E-12 5.2E-17 111.9 9.8 121 119-278 30-154 (205)
116 PRK04266 fibrillarin; Provisio 99.4 2.8E-11 6E-16 106.9 16.6 126 140-306 73-209 (226)
117 PF03848 TehB: Tellurite resis 99.4 1.2E-11 2.6E-16 105.9 13.6 103 140-279 31-133 (192)
118 COG4122 Predicted O-methyltran 99.4 7.5E-12 1.6E-16 108.9 12.5 119 120-278 45-165 (219)
119 PF02475 Met_10: Met-10+ like- 99.4 6.8E-12 1.5E-16 108.4 11.9 127 105-276 71-199 (200)
120 COG4106 Tam Trans-aconitate me 99.4 2.9E-12 6.2E-17 109.2 9.3 112 140-292 31-142 (257)
121 COG2518 Pcm Protein-L-isoaspar 99.4 1.7E-11 3.8E-16 105.2 14.0 133 104-284 42-174 (209)
122 PLN03075 nicotianamine synthas 99.4 9.5E-12 2.1E-16 113.1 13.1 111 139-282 123-236 (296)
123 KOG1540|consensus 99.4 2.5E-11 5.4E-16 106.0 15.0 128 129-292 92-228 (296)
124 COG0116 Predicted N6-adenine-s 99.4 1.2E-11 2.6E-16 115.0 13.9 136 118-282 172-346 (381)
125 PLN02585 magnesium protoporphy 99.3 3.2E-11 7E-16 111.4 16.0 109 104-225 108-221 (315)
126 TIGR02072 BioC biotin biosynth 99.3 1.5E-11 3.4E-16 108.9 12.9 101 140-279 35-135 (240)
127 PRK11783 rlmL 23S rRNA m(2)G24 99.3 2.2E-11 4.7E-16 124.3 15.4 106 118-230 170-317 (702)
128 PF08242 Methyltransf_12: Meth 99.3 4.3E-13 9.3E-18 103.0 2.2 99 144-275 1-99 (99)
129 COG2519 GCD14 tRNA(1-methylade 99.3 2.5E-11 5.5E-16 106.5 13.5 118 139-296 94-213 (256)
130 PF08704 GCD14: tRNA methyltra 99.3 6.8E-11 1.5E-15 105.3 14.9 137 128-306 31-170 (247)
131 KOG2187|consensus 99.3 3.9E-11 8.4E-16 114.2 13.9 147 70-226 285-465 (534)
132 PF01135 PCMT: Protein-L-isoas 99.3 2.7E-11 5.8E-16 105.6 11.9 132 104-281 42-174 (209)
133 PRK03612 spermidine synthase; 99.3 7.7E-11 1.7E-15 116.5 15.7 127 140-295 298-436 (521)
134 TIGR03840 TMPT_Se_Te thiopurin 99.3 5.6E-11 1.2E-15 104.1 13.2 106 141-279 36-152 (213)
135 TIGR02021 BchM-ChlM magnesium 99.3 1.5E-10 3.3E-15 101.8 15.9 89 122-223 38-126 (219)
136 KOG1270|consensus 99.3 4.6E-12 9.9E-17 111.1 5.9 100 141-279 91-195 (282)
137 PF05401 NodS: Nodulation prot 99.3 3E-10 6.4E-15 96.5 16.6 138 141-317 45-192 (201)
138 TIGR00417 speE spermidine synt 99.3 2.5E-10 5.4E-15 103.8 17.2 150 140-320 73-232 (270)
139 cd02440 AdoMet_MTases S-adenos 99.3 6.4E-11 1.4E-15 89.6 11.0 103 142-278 1-103 (107)
140 PF05958 tRNA_U5-meth_tr: tRNA 99.3 5.5E-11 1.2E-15 112.0 12.7 115 106-226 164-288 (352)
141 PRK05785 hypothetical protein; 99.3 1.4E-10 3.1E-15 102.7 14.4 98 141-283 53-150 (226)
142 smart00138 MeTrc Methyltransfe 99.3 2.8E-11 6.1E-16 109.6 9.8 110 140-281 100-244 (264)
143 PRK01581 speE spermidine synth 99.3 6.6E-10 1.4E-14 103.4 19.0 183 108-320 119-313 (374)
144 PRK13943 protein-L-isoaspartat 99.2 1.9E-10 4E-15 106.7 14.9 115 124-281 67-182 (322)
145 PRK05134 bifunctional 3-demeth 99.2 3.8E-10 8.3E-15 100.2 16.2 117 124-279 35-151 (233)
146 PRK11705 cyclopropane fatty ac 99.2 1.3E-10 2.9E-15 110.5 13.9 111 127-279 157-267 (383)
147 PLN02589 caffeoyl-CoA O-methyl 99.2 9.6E-11 2.1E-15 104.6 11.8 121 119-278 64-189 (247)
148 PTZ00338 dimethyladenosine tra 99.2 8.5E-11 1.8E-15 107.8 11.5 93 124-230 23-115 (294)
149 PF02390 Methyltransf_4: Putat 99.2 8.3E-11 1.8E-15 101.7 10.8 137 141-304 19-157 (195)
150 PF09445 Methyltransf_15: RNA 99.2 2.1E-11 4.6E-16 101.4 6.8 80 142-228 2-81 (163)
151 PRK04338 N(2),N(2)-dimethylgua 99.2 1.2E-10 2.6E-15 110.6 12.7 99 141-278 59-157 (382)
152 PRK11088 rrmA 23S rRNA methylt 99.2 2.2E-10 4.8E-15 104.2 13.5 104 141-291 87-194 (272)
153 PLN02366 spermidine synthase 99.2 9.7E-10 2.1E-14 101.3 16.8 159 105-291 57-220 (308)
154 PRK13255 thiopurine S-methyltr 99.2 2.7E-10 5.9E-15 100.2 12.5 101 141-277 39-153 (218)
155 PRK07580 Mg-protoporphyrin IX 99.2 1.2E-09 2.5E-14 96.7 16.0 91 123-226 46-137 (230)
156 PF13489 Methyltransf_23: Meth 99.2 6E-10 1.3E-14 92.5 13.2 96 140-282 23-118 (161)
157 PLN02336 phosphoethanolamine N 99.2 2.8E-10 6.1E-15 111.6 13.0 113 128-277 28-140 (475)
158 PTZ00146 fibrillarin; Provisio 99.2 1.7E-09 3.6E-14 98.2 16.7 160 118-317 110-282 (293)
159 COG2521 Predicted archaeal met 99.2 2.1E-10 4.5E-15 99.0 10.2 135 140-308 135-278 (287)
160 PRK14896 ksgA 16S ribosomal RN 99.2 2.7E-10 5.8E-15 102.9 11.4 89 124-229 16-104 (258)
161 COG2520 Predicted methyltransf 99.2 1.1E-09 2.3E-14 101.4 15.2 128 105-277 158-287 (341)
162 TIGR01983 UbiG ubiquinone bios 99.1 1.3E-09 2.8E-14 96.1 15.0 104 140-279 46-149 (224)
163 KOG3420|consensus 99.1 1.2E-10 2.6E-15 93.2 7.1 81 139-230 48-128 (185)
164 TIGR03438 probable methyltrans 99.1 1.1E-09 2.3E-14 101.2 14.4 132 119-280 44-178 (301)
165 PRK00274 ksgA 16S ribosomal RN 99.1 2.4E-10 5.2E-15 104.0 9.9 90 125-230 30-119 (272)
166 COG0220 Predicted S-adenosylme 99.1 6.4E-10 1.4E-14 97.9 11.3 118 141-282 50-167 (227)
167 COG0144 Sun tRNA and rRNA cyto 99.1 7.6E-09 1.7E-13 97.5 18.5 144 140-295 157-308 (355)
168 PRK11933 yebU rRNA (cytosine-C 99.1 2.5E-09 5.3E-14 103.9 15.4 145 139-295 113-262 (470)
169 PLN02823 spermine synthase 99.1 4.1E-09 8.9E-14 98.3 15.1 115 140-281 104-222 (336)
170 PF10294 Methyltransf_16: Puta 99.1 1.1E-09 2.3E-14 93.1 9.9 131 119-282 21-159 (173)
171 KOG4300|consensus 99.1 1.1E-09 2.4E-14 93.0 9.6 166 74-285 22-189 (252)
172 KOG2361|consensus 99.0 5.3E-10 1.1E-14 97.1 7.5 150 96-277 30-181 (264)
173 PF08003 Methyltransf_9: Prote 99.0 1.9E-08 4.2E-13 90.9 17.7 182 70-306 60-266 (315)
174 KOG1499|consensus 99.0 6.7E-10 1.5E-14 101.6 8.4 106 139-277 60-165 (346)
175 TIGR00308 TRM1 tRNA(guanine-26 99.0 4.2E-09 9.2E-14 99.5 13.9 100 141-278 46-146 (374)
176 PRK13256 thiopurine S-methyltr 99.0 2.8E-09 6.1E-14 93.7 11.3 108 140-279 44-163 (226)
177 COG0286 HsdM Type I restrictio 99.0 2.7E-09 5.9E-14 104.6 12.4 168 113-294 166-347 (489)
178 PRK06202 hypothetical protein; 99.0 2E-09 4.4E-14 95.6 10.3 77 140-228 61-141 (232)
179 PF04816 DUF633: Family of unk 99.0 1.1E-08 2.3E-13 89.0 14.4 139 143-320 1-139 (205)
180 KOG2899|consensus 99.0 2.6E-09 5.7E-14 92.7 10.2 48 139-186 58-105 (288)
181 TIGR00755 ksgA dimethyladenosi 99.0 5.2E-09 1.1E-13 94.2 12.5 90 123-229 15-107 (253)
182 KOG2915|consensus 99.0 3.1E-08 6.7E-13 87.5 16.4 175 91-310 44-238 (314)
183 KOG1541|consensus 99.0 1.1E-08 2.3E-13 87.9 12.9 137 124-292 35-173 (270)
184 PF12147 Methyltransf_20: Puta 99.0 4.6E-08 9.9E-13 87.7 17.0 164 123-319 120-310 (311)
185 PF06080 DUF938: Protein of un 98.9 3.3E-08 7.3E-13 85.0 14.6 163 125-320 14-204 (204)
186 PF02527 GidB: rRNA small subu 98.9 6.2E-08 1.4E-12 82.8 14.9 131 123-293 29-162 (184)
187 COG2384 Predicted SAM-dependen 98.9 1.1E-07 2.5E-12 81.8 16.3 151 127-320 8-158 (226)
188 KOG1663|consensus 98.9 3.3E-08 7.1E-13 85.6 12.0 121 119-278 58-182 (237)
189 PF05185 PRMT5: PRMT5 arginine 98.9 2E-08 4.4E-13 97.1 11.7 104 140-276 187-294 (448)
190 PRK01544 bifunctional N5-gluta 98.9 2.9E-08 6.3E-13 97.8 12.8 131 140-295 348-479 (506)
191 PF07021 MetW: Methionine bios 98.8 1.9E-08 4E-13 85.4 9.7 68 141-223 15-82 (193)
192 KOG2730|consensus 98.8 7E-09 1.5E-13 88.8 6.8 102 117-230 77-179 (263)
193 KOG1500|consensus 98.8 1.2E-08 2.6E-13 92.5 8.4 122 139-295 177-304 (517)
194 TIGR02081 metW methionine bios 98.8 2.3E-08 5.1E-13 86.3 10.0 74 141-229 15-88 (194)
195 PF05724 TPMT: Thiopurine S-me 98.8 4.6E-08 1E-12 86.0 11.7 120 141-293 39-181 (218)
196 COG3129 Predicted SAM-dependen 98.8 1.9E-08 4E-13 86.8 8.8 122 104-230 37-167 (292)
197 PF00891 Methyltransf_2: O-met 98.8 6.4E-08 1.4E-12 86.4 12.1 94 141-277 102-197 (241)
198 COG0357 GidB Predicted S-adeno 98.8 3.1E-07 6.8E-12 79.9 15.8 186 73-317 15-208 (215)
199 COG4976 Predicted methyltransf 98.8 4.6E-09 9.9E-14 90.6 4.1 133 125-305 113-263 (287)
200 KOG0820|consensus 98.8 4.3E-08 9.4E-13 86.6 9.8 94 124-231 45-138 (315)
201 PF01189 Nol1_Nop2_Fmu: NOL1/N 98.8 8.4E-08 1.8E-12 87.7 11.5 145 140-295 86-239 (283)
202 PF11599 AviRa: RRNA methyltra 98.7 1.1E-07 2.4E-12 81.3 11.3 138 122-282 36-216 (246)
203 PF01861 DUF43: Protein of unk 98.7 4.6E-07 1E-11 79.5 14.9 131 140-310 45-181 (243)
204 PRK04148 hypothetical protein; 98.7 6.9E-08 1.5E-12 77.7 9.0 83 124-225 3-87 (134)
205 PF03291 Pox_MCEL: mRNA cappin 98.7 7.6E-08 1.7E-12 89.7 10.4 115 139-281 62-188 (331)
206 PF01564 Spermine_synth: Sperm 98.7 2.1E-07 4.6E-12 83.4 12.6 123 140-291 77-205 (246)
207 COG0030 KsgA Dimethyladenosine 98.7 1E-07 2.2E-12 85.1 10.3 91 125-230 18-109 (259)
208 PRK10742 putative methyltransf 98.7 2E-07 4.4E-12 82.5 11.4 93 141-242 90-190 (250)
209 KOG3010|consensus 98.6 7.5E-08 1.6E-12 83.9 6.7 105 141-282 35-139 (261)
210 COG0421 SpeE Spermidine syntha 98.6 5.9E-07 1.3E-11 81.7 12.9 110 141-281 78-192 (282)
211 COG1352 CheR Methylase of chem 98.5 6.5E-07 1.4E-11 80.7 10.9 126 123-280 79-242 (268)
212 PRK10611 chemotaxis methyltran 98.5 4E-07 8.6E-12 83.1 9.6 109 141-280 117-263 (287)
213 COG4262 Predicted spermidine s 98.5 2.1E-06 4.5E-11 79.0 14.1 193 93-320 243-451 (508)
214 PF06962 rRNA_methylase: Putat 98.5 4.9E-06 1.1E-10 67.4 14.3 107 165-295 1-114 (140)
215 KOG2912|consensus 98.5 2.7E-06 5.8E-11 76.9 13.8 120 105-229 64-191 (419)
216 PF01739 CheR: CheR methyltran 98.5 3.8E-07 8.3E-12 78.7 8.2 126 123-280 13-176 (196)
217 PRK00050 16S rRNA m(4)C1402 me 98.5 3.5E-07 7.5E-12 83.7 8.0 93 123-226 5-100 (296)
218 KOG1661|consensus 98.5 7.3E-07 1.6E-11 76.2 9.3 137 104-283 50-197 (237)
219 PF01728 FtsJ: FtsJ-like methy 98.5 5.3E-07 1.1E-11 76.9 8.1 146 140-318 24-178 (181)
220 KOG2671|consensus 98.5 3.2E-07 7E-12 83.6 6.9 129 139-279 208-354 (421)
221 PRK00536 speE spermidine synth 98.4 8.6E-06 1.9E-10 73.3 15.1 146 102-294 36-188 (262)
222 PLN02232 ubiquinone biosynthes 98.4 3.9E-06 8.4E-11 70.3 11.7 77 167-277 1-79 (160)
223 PF00398 RrnaAD: Ribosomal RNA 98.4 1.9E-06 4.1E-11 78.1 9.8 93 123-227 16-108 (262)
224 KOG1975|consensus 98.3 3E-06 6.4E-11 76.9 9.7 121 141-290 119-247 (389)
225 PF05148 Methyltransf_8: Hypot 98.3 9.8E-06 2.1E-10 69.7 12.2 126 126-312 60-188 (219)
226 COG3963 Phospholipid N-methylt 98.2 1.3E-05 2.9E-10 66.2 10.6 121 120-277 31-154 (194)
227 KOG1122|consensus 98.2 1.5E-05 3.2E-10 74.8 11.9 137 139-294 241-390 (460)
228 COG0293 FtsJ 23S rRNA methylas 98.2 3.6E-05 7.7E-10 66.4 12.7 142 140-313 46-189 (205)
229 COG4076 Predicted RNA methylas 98.2 2.8E-06 6E-11 71.4 5.6 69 141-222 34-102 (252)
230 KOG4589|consensus 98.1 3.1E-05 6.7E-10 65.1 10.7 140 140-311 70-212 (232)
231 COG3897 Predicted methyltransf 98.1 8E-06 1.7E-10 69.2 6.4 116 125-283 67-182 (218)
232 TIGR03439 methyl_EasF probable 98.1 6.4E-05 1.4E-09 69.7 13.1 136 119-280 57-198 (319)
233 PF02005 TRM: N2,N2-dimethylgu 98.1 1.7E-05 3.7E-10 75.3 9.3 101 141-278 51-153 (377)
234 TIGR00497 hsdM type I restrict 98.1 6.1E-05 1.3E-09 74.5 13.6 150 115-279 197-355 (501)
235 PF13679 Methyltransf_32: Meth 98.1 3E-05 6.6E-10 63.4 9.4 59 140-199 26-91 (141)
236 PF05219 DREV: DREV methyltran 98.1 3.6E-05 7.8E-10 68.4 10.2 90 141-277 96-186 (265)
237 TIGR01444 fkbM_fam methyltrans 98.0 1.7E-05 3.8E-10 64.6 7.7 57 142-199 1-57 (143)
238 TIGR00478 tly hemolysin TlyA f 98.0 9.5E-06 2.1E-10 71.7 6.0 38 140-178 76-113 (228)
239 PF13578 Methyltransf_24: Meth 98.0 3E-06 6.5E-11 65.6 2.5 100 144-277 1-103 (106)
240 PF08123 DOT1: Histone methyla 98.0 2.1E-05 4.5E-10 68.4 7.1 94 123-223 28-129 (205)
241 KOG2198|consensus 97.9 0.00024 5.2E-09 66.0 13.1 168 139-315 155-334 (375)
242 PF05891 Methyltransf_PK: AdoM 97.9 4.2E-05 9.1E-10 66.4 7.4 122 141-296 57-194 (218)
243 COG1867 TRM1 N2,N2-dimethylgua 97.9 0.00011 2.3E-09 68.3 10.0 100 141-278 54-153 (380)
244 PF04989 CmcI: Cephalosporin h 97.8 5.6E-05 1.2E-09 65.3 7.4 140 140-311 33-194 (206)
245 TIGR00006 S-adenosyl-methyltra 97.8 9.4E-05 2E-09 68.0 8.9 94 122-225 5-101 (305)
246 KOG3115|consensus 97.8 0.00017 3.7E-09 61.5 9.7 129 141-295 62-200 (249)
247 KOG3045|consensus 97.8 0.00015 3.2E-09 64.1 9.5 113 126-295 168-283 (325)
248 PF01234 NNMT_PNMT_TEMT: NNMT/ 97.7 0.001 2.2E-08 59.7 13.8 155 124-307 37-239 (256)
249 KOG3201|consensus 97.7 7.5E-05 1.6E-09 61.4 5.4 141 119-295 11-155 (201)
250 PF03141 Methyltransf_29: Puta 97.7 0.00021 4.5E-09 69.0 9.1 116 121-280 97-220 (506)
251 PF07669 Eco57I: Eco57I restri 97.7 0.00011 2.4E-09 57.0 6.2 66 216-295 2-73 (106)
252 KOG2940|consensus 97.6 0.00016 3.5E-09 62.8 7.2 80 141-232 74-153 (325)
253 PF09243 Rsm22: Mitochondrial 97.6 0.00084 1.8E-08 61.2 12.3 47 139-185 33-80 (274)
254 PRK13699 putative methylase; P 97.6 0.00029 6.2E-09 62.4 8.7 87 193-296 3-89 (227)
255 PF10237 N6-adenineMlase: Prob 97.6 0.00068 1.5E-08 56.6 9.7 109 141-291 27-135 (162)
256 COG1189 Predicted rRNA methyla 97.5 0.00046 9.9E-09 60.6 8.4 97 139-277 79-176 (245)
257 PRK11524 putative methyltransf 97.5 0.00026 5.6E-09 64.9 7.3 96 192-306 9-104 (284)
258 PF07942 N2227: N2227-like pro 97.5 0.0014 3E-08 59.3 11.0 40 140-181 57-96 (270)
259 PF01555 N6_N4_Mtase: DNA meth 97.4 0.00043 9.3E-09 60.5 7.5 60 117-181 172-231 (231)
260 PF03059 NAS: Nicotianamine sy 97.4 0.0009 1.9E-08 60.7 8.8 106 140-278 121-229 (276)
261 PRK11524 putative methyltransf 97.4 0.00061 1.3E-08 62.4 7.9 64 117-185 189-252 (284)
262 PF04445 SAM_MT: Putative SAM- 97.4 0.00071 1.5E-08 59.7 7.6 81 141-230 77-165 (234)
263 PF01269 Fibrillarin: Fibrilla 97.3 0.0034 7.3E-08 54.8 11.3 161 118-318 51-224 (229)
264 COG0500 SmtA SAM-dependent met 97.3 0.0079 1.7E-07 47.7 13.0 103 143-281 52-157 (257)
265 PRK13699 putative methylase; P 97.2 0.0014 3E-08 58.1 8.1 65 117-186 144-208 (227)
266 COG1568 Predicted methyltransf 97.2 0.0052 1.1E-07 55.1 11.3 104 141-279 154-260 (354)
267 KOG3178|consensus 97.2 0.0021 4.6E-08 59.5 9.3 95 141-277 179-273 (342)
268 PF07091 FmrO: Ribosomal RNA m 97.2 0.0018 4E-08 57.4 8.5 87 121-222 91-177 (251)
269 PRK11760 putative 23S rRNA C24 97.2 0.0012 2.6E-08 61.3 7.3 68 139-224 211-278 (357)
270 KOG4058|consensus 97.2 0.0012 2.6E-08 53.6 6.2 77 120-199 55-131 (199)
271 PF10354 DUF2431: Domain of un 97.1 0.0073 1.6E-07 50.8 11.1 131 146-296 3-145 (166)
272 KOG1253|consensus 97.1 0.00034 7.4E-09 67.1 3.4 105 139-278 109-215 (525)
273 KOG1709|consensus 97.1 0.0057 1.2E-07 52.9 10.3 123 119-280 85-207 (271)
274 cd00315 Cyt_C5_DNA_methylase C 97.1 0.0013 2.8E-08 60.0 6.5 75 142-230 2-76 (275)
275 PF01795 Methyltransf_5: MraW 97.1 0.00053 1.1E-08 63.1 3.9 92 124-225 7-102 (310)
276 KOG2078|consensus 97.0 0.00052 1.1E-08 64.7 3.3 89 105-199 219-308 (495)
277 PF04672 Methyltransf_19: S-ad 97.0 0.029 6.4E-07 50.5 13.9 145 123-295 53-211 (267)
278 COG1889 NOP1 Fibrillarin-like 96.8 0.13 2.9E-06 44.2 16.0 128 117-280 53-181 (231)
279 PF00145 DNA_methylase: C-5 cy 96.7 0.0044 9.6E-08 57.3 7.1 75 142-231 2-76 (335)
280 KOG1099|consensus 96.7 0.0026 5.7E-08 55.4 4.8 111 141-279 43-163 (294)
281 KOG2793|consensus 96.6 0.077 1.7E-06 47.4 13.6 119 141-293 88-215 (248)
282 KOG3350|consensus 96.5 0.071 1.5E-06 44.7 12.0 172 71-293 9-186 (217)
283 PF11968 DUF3321: Putative met 96.5 0.025 5.5E-07 49.2 9.8 130 123-306 33-180 (219)
284 KOG1269|consensus 96.4 0.0067 1.4E-07 57.3 6.3 103 141-278 112-214 (364)
285 KOG3987|consensus 96.3 0.00099 2.1E-08 57.1 0.1 92 139-277 112-205 (288)
286 KOG2798|consensus 96.2 0.041 8.9E-07 50.3 9.7 39 140-180 151-189 (369)
287 COG0270 Dcm Site-specific DNA 96.2 0.028 6.1E-07 52.6 9.0 151 141-318 4-164 (328)
288 COG5459 Predicted rRNA methyla 96.1 0.022 4.7E-07 52.8 7.6 39 139-177 113-152 (484)
289 COG0275 Predicted S-adenosylme 96.1 0.035 7.6E-07 50.6 8.7 73 123-199 9-82 (314)
290 KOG1501|consensus 96.0 0.014 3.1E-07 55.4 5.8 56 141-197 68-123 (636)
291 PF03141 Methyltransf_29: Puta 95.8 0.026 5.6E-07 54.8 7.0 135 141-320 367-506 (506)
292 PF01555 N6_N4_Mtase: DNA meth 95.8 0.0094 2E-07 51.9 3.6 68 217-295 1-74 (231)
293 PHA01634 hypothetical protein 95.5 0.037 8E-07 44.0 5.7 72 139-223 28-99 (156)
294 KOG2352|consensus 95.5 0.13 2.8E-06 49.9 10.4 109 141-279 50-161 (482)
295 COG2961 ComJ Protein involved 95.1 0.32 6.9E-06 43.2 10.6 115 144-294 93-210 (279)
296 KOG1227|consensus 95.0 0.011 2.3E-07 53.7 1.4 59 141-199 196-254 (351)
297 PF05711 TylF: Macrocin-O-meth 94.8 0.35 7.5E-06 43.3 10.4 122 140-296 75-231 (248)
298 KOG1331|consensus 94.8 0.042 9.1E-07 49.6 4.5 117 112-278 26-142 (293)
299 KOG2352|consensus 94.7 0.065 1.4E-06 51.9 6.0 118 140-280 296-417 (482)
300 COG4889 Predicted helicase [Ge 94.6 0.3 6.4E-06 50.7 10.3 259 26-314 747-1056(1518)
301 COG4301 Uncharacterized conser 94.5 2 4.3E-05 38.4 13.9 134 118-282 59-196 (321)
302 PRK10458 DNA cytosine methylas 94.4 0.4 8.7E-06 47.0 10.8 88 140-231 88-184 (467)
303 COG1064 AdhP Zn-dependent alco 94.4 0.12 2.5E-06 48.4 6.7 91 140-280 167-259 (339)
304 PRK01747 mnmC bifunctional tRN 94.2 0.29 6.4E-06 50.2 9.9 123 141-296 59-220 (662)
305 PF04378 RsmJ: Ribosomal RNA s 93.8 0.15 3.2E-06 45.6 5.8 78 144-231 62-140 (245)
306 PF00107 ADH_zinc_N: Zinc-bind 93.7 0.068 1.5E-06 42.3 3.3 89 149-280 1-89 (130)
307 PF07757 AdoMet_MTase: Predict 93.6 0.08 1.7E-06 40.8 3.4 31 140-172 59-89 (112)
308 TIGR00675 dcm DNA-methyltransf 93.3 0.15 3.3E-06 47.4 5.4 72 143-230 1-73 (315)
309 KOG1562|consensus 93.0 0.22 4.7E-06 45.4 5.7 125 139-291 121-250 (337)
310 KOG0024|consensus 92.7 0.58 1.3E-05 43.3 8.0 43 139-181 169-212 (354)
311 COG1565 Uncharacterized conser 92.6 0.43 9.3E-06 44.8 7.2 73 114-186 46-132 (370)
312 PRK08594 enoyl-(acyl carrier p 92.6 0.49 1.1E-05 42.3 7.5 83 141-227 8-98 (257)
313 PF02636 Methyltransf_28: Puta 92.5 0.34 7.3E-06 43.5 6.3 45 141-185 20-72 (252)
314 COG0863 DNA modification methy 92.4 0.57 1.2E-05 42.7 7.9 64 118-186 204-267 (302)
315 KOG0822|consensus 92.4 0.39 8.4E-06 47.1 6.8 74 141-223 369-446 (649)
316 KOG1201|consensus 92.2 0.76 1.7E-05 42.0 8.1 96 139-239 37-137 (300)
317 PRK07576 short chain dehydroge 92.2 0.88 1.9E-05 40.7 8.7 83 141-226 10-96 (264)
318 cd08283 FDH_like_1 Glutathione 92.1 0.46 1E-05 45.2 7.1 43 140-182 185-228 (386)
319 PRK07533 enoyl-(acyl carrier p 92.1 0.66 1.4E-05 41.4 7.7 85 141-228 11-100 (258)
320 PRK08339 short chain dehydroge 92.0 1 2.3E-05 40.3 8.9 85 141-227 9-96 (263)
321 PRK06079 enoyl-(acyl carrier p 92.0 0.79 1.7E-05 40.8 8.1 82 141-227 8-94 (252)
322 PRK05867 short chain dehydroge 91.6 0.85 1.8E-05 40.4 7.8 86 141-229 10-99 (253)
323 KOG2651|consensus 91.3 0.77 1.7E-05 43.3 7.2 40 141-181 155-194 (476)
324 KOG1596|consensus 91.3 0.87 1.9E-05 40.4 7.1 127 119-281 135-263 (317)
325 PRK06125 short chain dehydroge 91.0 2.2 4.7E-05 37.9 9.9 88 141-232 8-97 (259)
326 PRK12384 sorbitol-6-phosphate 90.8 1.4 3.1E-05 39.0 8.5 90 141-231 3-96 (259)
327 PRK07063 short chain dehydroge 90.7 1.8 4E-05 38.3 9.1 86 141-227 8-97 (260)
328 PF05430 Methyltransf_30: S-ad 90.1 0.9 1.9E-05 36.2 5.8 91 192-320 33-123 (124)
329 PF07279 DUF1442: Protein of u 90.1 6.2 0.00013 34.5 11.2 76 141-223 43-122 (218)
330 KOG3924|consensus 89.9 0.44 9.6E-06 45.1 4.4 93 124-223 179-279 (419)
331 PF05063 MT-A70: MT-A70 ; Int 89.9 1.5 3.3E-05 37.0 7.4 73 217-304 1-74 (176)
332 PRK09880 L-idonate 5-dehydroge 89.9 2.3 4.9E-05 39.7 9.4 42 140-181 170-212 (343)
333 PRK08415 enoyl-(acyl carrier p 89.8 1.8 4E-05 39.1 8.4 84 141-227 6-94 (274)
334 PF02086 MethyltransfD12: D12 89.7 0.45 9.8E-06 42.5 4.3 53 124-180 7-59 (260)
335 PRK07062 short chain dehydroge 89.7 1.9 4.1E-05 38.4 8.4 87 141-228 9-99 (265)
336 PRK07889 enoyl-(acyl carrier p 89.1 1.1 2.4E-05 39.9 6.4 82 141-227 8-96 (256)
337 PRK07984 enoyl-(acyl carrier p 88.9 1.8 4E-05 38.8 7.7 85 141-228 7-96 (262)
338 PRK12481 2-deoxy-D-gluconate 3 88.8 3 6.5E-05 36.9 8.9 87 141-232 9-99 (251)
339 PRK09424 pntA NAD(P) transhydr 88.7 4.1 9E-05 40.4 10.5 42 139-181 164-206 (509)
340 PRK07326 short chain dehydroge 88.7 2.2 4.8E-05 37.1 7.9 81 141-225 7-91 (237)
341 PRK09242 tropinone reductase; 88.6 3.5 7.6E-05 36.4 9.3 86 141-227 10-99 (257)
342 PRK08159 enoyl-(acyl carrier p 88.3 2.2 4.8E-05 38.4 7.9 84 141-227 11-99 (272)
343 PRK06603 enoyl-(acyl carrier p 88.2 2.4 5.2E-05 37.8 8.0 84 141-227 9-97 (260)
344 PRK07523 gluconate 5-dehydroge 88.1 2.5 5.4E-05 37.3 7.9 85 141-228 11-99 (255)
345 PRK07109 short chain dehydroge 87.8 3.1 6.8E-05 38.8 8.7 85 141-228 9-97 (334)
346 PF05050 Methyltransf_21: Meth 87.7 1.6 3.5E-05 35.6 6.1 55 145-199 1-61 (167)
347 KOG2782|consensus 87.6 0.68 1.5E-05 40.4 3.7 68 114-183 20-87 (303)
348 PRK06194 hypothetical protein; 87.5 2.8 6E-05 37.8 8.0 86 141-229 7-96 (287)
349 PRK09072 short chain dehydroge 87.5 3.4 7.3E-05 36.7 8.4 84 141-228 6-92 (263)
350 COG4798 Predicted methyltransf 87.4 2.8 6.1E-05 36.1 7.2 31 140-170 49-80 (238)
351 cd08254 hydroxyacyl_CoA_DH 6-h 87.4 2.5 5.4E-05 38.8 7.8 40 140-180 166-206 (338)
352 PRK12939 short chain dehydroge 87.2 2.5 5.5E-05 36.9 7.4 84 141-227 8-95 (250)
353 PRK05872 short chain dehydroge 86.6 5 0.00011 36.6 9.2 88 141-232 10-101 (296)
354 PRK06101 short chain dehydroge 86.0 3.1 6.8E-05 36.5 7.3 78 142-227 3-82 (240)
355 PRK06139 short chain dehydroge 86.0 3.2 6.9E-05 38.8 7.7 91 141-234 8-102 (330)
356 PRK08324 short chain dehydroge 86.0 2.5 5.4E-05 43.7 7.5 87 141-231 423-513 (681)
357 PF03492 Methyltransf_7: SAM d 86.0 5.6 0.00012 37.3 9.3 21 140-160 17-37 (334)
358 PRK07370 enoyl-(acyl carrier p 85.9 2.1 4.5E-05 38.2 6.2 85 141-227 7-98 (258)
359 PRK06500 short chain dehydroge 85.9 3 6.4E-05 36.5 7.1 82 141-228 7-92 (249)
360 PRK08265 short chain dehydroge 85.6 5.5 0.00012 35.4 8.8 81 141-227 7-91 (261)
361 PF03686 UPF0146: Uncharacteri 85.6 2 4.3E-05 34.2 5.1 64 141-225 15-80 (127)
362 PRK06505 enoyl-(acyl carrier p 85.6 4.7 0.0001 36.3 8.4 84 141-227 8-96 (271)
363 PRK08213 gluconate 5-dehydroge 85.5 3.3 7.2E-05 36.6 7.3 84 141-227 13-100 (259)
364 PRK06124 gluconate 5-dehydroge 85.4 4 8.6E-05 36.0 7.8 85 141-228 12-100 (256)
365 PRK12826 3-ketoacyl-(acyl-carr 85.4 3.7 8.1E-05 35.8 7.5 86 141-229 7-96 (251)
366 PRK08251 short chain dehydroge 85.3 5.3 0.00011 35.0 8.4 87 141-228 3-93 (248)
367 KOG2920|consensus 85.3 0.96 2.1E-05 41.0 3.6 57 119-176 95-152 (282)
368 PRK06914 short chain dehydroge 85.2 5.4 0.00012 35.7 8.6 87 141-228 4-93 (280)
369 COG0863 DNA modification methy 85.2 3.2 6.9E-05 37.8 7.2 105 192-307 17-125 (302)
370 PRK07102 short chain dehydroge 85.1 5.3 0.00011 34.9 8.3 85 141-228 2-88 (243)
371 PF00106 adh_short: short chai 85.1 1.9 4.2E-05 35.1 5.2 90 143-235 3-99 (167)
372 PRK05876 short chain dehydroge 85.0 5.4 0.00012 36.0 8.5 88 141-231 7-98 (275)
373 KOG2360|consensus 84.5 2.8 6.1E-05 39.7 6.4 85 139-230 213-298 (413)
374 PRK12744 short chain dehydroge 84.5 8.5 0.00018 34.0 9.5 84 141-227 9-100 (257)
375 cd08237 ribitol-5-phosphate_DH 84.2 9.3 0.0002 35.6 10.0 42 140-181 164-207 (341)
376 PRK07454 short chain dehydroge 84.1 4.3 9.2E-05 35.4 7.3 85 141-228 7-95 (241)
377 TIGR03451 mycoS_dep_FDH mycoth 84.1 3.9 8.4E-05 38.3 7.4 41 140-180 177-218 (358)
378 cd08281 liver_ADH_like1 Zinc-d 84.1 3.9 8.5E-05 38.6 7.4 41 141-181 193-234 (371)
379 cd05188 MDR Medium chain reduc 83.8 5.5 0.00012 34.9 7.9 40 140-180 135-175 (271)
380 PRK08177 short chain dehydroge 83.6 4 8.7E-05 35.3 6.8 78 142-227 3-82 (225)
381 PRK07985 oxidoreductase; Provi 83.6 2.4 5.2E-05 38.7 5.6 83 141-226 50-138 (294)
382 PRK07067 sorbitol dehydrogenas 83.5 8.1 0.00017 34.1 8.9 82 141-228 7-92 (257)
383 PRK08589 short chain dehydroge 83.4 7.5 0.00016 34.8 8.7 83 141-227 7-93 (272)
384 KOG1205|consensus 83.3 9.7 0.00021 34.8 9.2 94 141-236 13-111 (282)
385 PRK07666 fabG 3-ketoacyl-(acyl 83.2 6.7 0.00015 34.1 8.2 85 141-228 8-96 (239)
386 PRK06701 short chain dehydroge 83.2 6.3 0.00014 35.8 8.2 84 141-227 47-135 (290)
387 KOG0821|consensus 83.1 6.7 0.00015 34.5 7.6 70 125-199 38-107 (326)
388 PRK08267 short chain dehydroge 83.0 5.3 0.00012 35.3 7.5 84 141-229 2-90 (260)
389 PRK06949 short chain dehydroge 82.9 7.3 0.00016 34.2 8.3 84 141-227 10-97 (258)
390 PRK08862 short chain dehydroge 82.9 6 0.00013 34.6 7.7 83 141-226 6-93 (227)
391 PF13561 adh_short_C2: Enoyl-( 82.5 0.82 1.8E-05 40.2 2.0 121 147-278 1-132 (241)
392 PRK06953 short chain dehydroge 82.5 8.3 0.00018 33.2 8.4 77 142-227 3-81 (222)
393 PF02254 TrkA_N: TrkA-N domain 82.4 2.2 4.8E-05 32.8 4.2 63 148-222 4-68 (116)
394 PRK06181 short chain dehydroge 81.9 5.2 0.00011 35.4 7.0 84 141-227 2-89 (263)
395 PF06460 NSP13: Coronavirus NS 81.9 32 0.00069 31.1 11.5 116 140-294 62-185 (299)
396 PRK05854 short chain dehydroge 81.7 6.8 0.00015 36.1 7.9 86 141-227 15-104 (313)
397 KOG0725|consensus 81.7 13 0.00028 33.8 9.5 129 141-277 9-147 (270)
398 PF06859 Bin3: Bicoid-interact 81.5 1.1 2.3E-05 34.8 2.0 29 248-279 16-44 (110)
399 PRK05855 short chain dehydroge 81.4 4.8 0.0001 40.0 7.3 87 141-230 316-406 (582)
400 COG3510 CmcI Cephalosporin hyd 81.3 7 0.00015 33.6 6.9 137 140-311 70-225 (237)
401 PRK07677 short chain dehydroge 81.3 7.3 0.00016 34.3 7.7 82 141-225 2-87 (252)
402 PRK08643 acetoin reductase; Va 81.2 5.8 0.00013 34.9 7.0 87 141-230 3-93 (256)
403 COG0677 WecC UDP-N-acetyl-D-ma 81.1 14 0.00029 35.5 9.5 40 254-293 103-144 (436)
404 PRK12429 3-hydroxybutyrate deh 81.0 5.2 0.00011 35.1 6.7 87 141-230 5-95 (258)
405 PRK05786 fabG 3-ketoacyl-(acyl 81.0 9.4 0.0002 33.0 8.3 81 141-225 6-90 (238)
406 PRK07904 short chain dehydroge 81.0 4.9 0.00011 35.7 6.5 85 141-227 9-98 (253)
407 PRK06128 oxidoreductase; Provi 80.9 7.9 0.00017 35.3 8.0 127 141-277 56-189 (300)
408 PRK07814 short chain dehydroge 80.9 6.5 0.00014 34.9 7.3 84 141-227 11-98 (263)
409 TIGR03366 HpnZ_proposed putati 80.8 9.9 0.00022 34.2 8.6 42 140-181 121-163 (280)
410 PRK06997 enoyl-(acyl carrier p 80.8 7.1 0.00015 34.8 7.5 84 141-227 7-95 (260)
411 PRK07890 short chain dehydroge 80.7 12 0.00027 32.7 9.0 84 141-227 6-93 (258)
412 TIGR00027 mthyl_TIGR00027 meth 80.7 18 0.00038 32.6 10.0 57 141-199 83-141 (260)
413 PRK07832 short chain dehydroge 80.7 6.5 0.00014 35.2 7.2 84 143-228 3-90 (272)
414 PRK07097 gluconate 5-dehydroge 80.5 11 0.00024 33.4 8.7 85 141-228 11-99 (265)
415 PRK06484 short chain dehydroge 80.1 8.6 0.00019 38.0 8.5 81 141-227 270-354 (520)
416 PRK06197 short chain dehydroge 80.1 6.4 0.00014 35.9 7.1 86 141-227 17-106 (306)
417 PRK13394 3-hydroxybutyrate deh 80.0 7.4 0.00016 34.3 7.3 85 141-228 8-96 (262)
418 cd05278 FDH_like Formaldehyde 79.9 8.1 0.00018 35.7 7.8 42 140-181 168-210 (347)
419 PRK06940 short chain dehydroge 79.8 3.6 7.8E-05 37.1 5.3 82 142-227 4-87 (275)
420 PRK05650 short chain dehydroge 79.8 8.1 0.00018 34.4 7.6 87 142-231 2-92 (270)
421 PRK06196 oxidoreductase; Provi 79.7 4.2 9.1E-05 37.4 5.8 80 141-227 27-110 (315)
422 PRK07806 short chain dehydroge 79.6 15 0.00033 32.0 9.2 122 141-278 7-133 (248)
423 PTZ00357 methyltransferase; Pr 79.5 4.9 0.00011 41.1 6.3 83 141-223 702-799 (1072)
424 PRK08217 fabG 3-ketoacyl-(acyl 79.3 6.9 0.00015 34.1 6.9 84 141-227 6-93 (253)
425 PRK06172 short chain dehydroge 79.1 8.5 0.00019 33.8 7.4 84 141-227 8-95 (253)
426 PRK07791 short chain dehydroge 78.9 8.2 0.00018 35.0 7.4 85 141-228 7-104 (286)
427 PRK08993 2-deoxy-D-gluconate 3 78.8 12 0.00027 32.9 8.4 83 141-228 11-97 (253)
428 PRK08340 glucose-1-dehydrogena 78.3 5.9 0.00013 35.1 6.1 82 142-227 2-87 (259)
429 PRK06182 short chain dehydroge 78.3 9.6 0.00021 34.0 7.6 81 141-230 4-88 (273)
430 PRK12747 short chain dehydroge 78.3 16 0.00035 32.0 8.9 127 141-277 5-142 (252)
431 PRK09291 short chain dehydroge 78.1 19 0.00042 31.5 9.4 81 141-228 3-85 (257)
432 COG1063 Tdh Threonine dehydrog 78.0 5.9 0.00013 37.3 6.3 41 141-181 170-211 (350)
433 TIGR01202 bchC 2-desacetyl-2-h 78.0 13 0.00029 34.0 8.6 40 141-180 146-186 (308)
434 TIGR02632 RhaD_aldol-ADH rhamn 78.0 9.3 0.0002 39.5 8.2 87 141-228 415-505 (676)
435 PRK12746 short chain dehydroge 77.8 19 0.00041 31.5 9.3 85 141-228 7-102 (254)
436 cd08285 NADP_ADH NADP(H)-depen 77.7 9 0.00019 35.6 7.4 41 140-180 167-208 (351)
437 PRK09186 flagellin modificatio 77.4 5.2 0.00011 35.2 5.5 83 141-224 5-91 (256)
438 PRK05565 fabG 3-ketoacyl-(acyl 77.3 5.8 0.00013 34.5 5.7 86 141-229 6-96 (247)
439 PRK07041 short chain dehydroge 77.3 10 0.00023 32.6 7.3 76 148-228 4-81 (230)
440 cd08293 PTGR2 Prostaglandin re 77.0 13 0.00028 34.3 8.3 41 141-181 156-198 (345)
441 PRK06138 short chain dehydroge 77.0 11 0.00024 32.9 7.5 85 141-229 6-94 (252)
442 PRK07831 short chain dehydroge 76.8 13 0.00028 32.9 7.9 89 141-230 18-111 (262)
443 PRK15001 SAM-dependent 23S rib 76.8 44 0.00096 31.9 11.8 93 142-277 47-140 (378)
444 TIGR03206 benzo_BadH 2-hydroxy 76.7 14 0.0003 32.2 8.0 86 141-229 4-93 (250)
445 PRK05993 short chain dehydroge 76.6 7.8 0.00017 34.8 6.5 82 141-231 5-91 (277)
446 PRK08303 short chain dehydroge 76.5 6.7 0.00014 36.1 6.1 81 141-224 9-103 (305)
447 PRK08085 gluconate 5-dehydroge 76.4 16 0.00034 32.1 8.3 85 141-228 10-98 (254)
448 PRK12937 short chain dehydroge 75.9 29 0.00062 30.1 9.8 86 141-229 6-96 (245)
449 PF02153 PDH: Prephenate dehyd 75.3 47 0.001 29.8 11.1 108 153-312 1-108 (258)
450 KOG4174|consensus 75.1 20 0.00044 32.1 8.2 140 141-295 58-209 (282)
451 PLN02989 cinnamyl-alcohol dehy 75.0 9 0.00019 35.2 6.6 80 141-226 6-87 (325)
452 PRK06077 fabG 3-ketoacyl-(acyl 74.8 23 0.0005 30.8 9.0 85 141-228 7-96 (252)
453 COG0604 Qor NADPH:quinone redu 74.5 14 0.0003 34.5 7.6 95 140-277 143-239 (326)
454 PRK06398 aldose dehydrogenase; 74.4 8.8 0.00019 34.1 6.1 74 141-228 7-84 (258)
455 PRK07231 fabG 3-ketoacyl-(acyl 74.1 12 0.00026 32.6 6.9 83 141-227 6-92 (251)
456 TIGR02822 adh_fam_2 zinc-bindi 74.1 29 0.00062 32.1 9.8 41 140-181 166-207 (329)
457 PRK07035 short chain dehydroge 73.8 16 0.00034 32.0 7.6 84 141-227 9-96 (252)
458 COG0300 DltE Short-chain dehyd 73.6 20 0.00044 32.4 8.2 94 141-236 7-104 (265)
459 TIGR02825 B4_12hDH leukotriene 73.6 23 0.00051 32.4 9.0 40 140-180 139-180 (325)
460 PLN03209 translocon at the inn 73.5 12 0.00026 37.7 7.3 79 141-225 81-168 (576)
461 PRK05866 short chain dehydroge 73.4 10 0.00022 34.6 6.4 84 141-227 41-128 (293)
462 PLN02780 ketoreductase/ oxidor 73.4 14 0.0003 34.3 7.3 86 141-227 54-143 (320)
463 PRK07774 short chain dehydroge 73.3 13 0.00029 32.4 7.0 84 141-227 7-94 (250)
464 PRK05599 hypothetical protein; 73.2 15 0.00032 32.4 7.2 83 143-227 3-88 (246)
465 PLN02740 Alcohol dehydrogenase 73.1 16 0.00035 34.5 8.0 42 140-181 199-241 (381)
466 PRK06179 short chain dehydroge 73.1 7.6 0.00016 34.5 5.5 80 141-231 5-88 (270)
467 PRK08277 D-mannonate oxidoredu 73.1 13 0.00027 33.3 6.9 84 141-227 11-98 (278)
468 PRK12743 oxidoreductase; Provi 73.1 22 0.00048 31.3 8.4 85 141-228 3-92 (256)
469 PRK12829 short chain dehydroge 72.9 15 0.00032 32.3 7.3 82 141-227 12-97 (264)
470 PF14314 Methyltrans_Mon: Viru 72.9 13 0.00029 38.0 7.5 27 141-167 324-350 (675)
471 PRK12859 3-ketoacyl-(acyl-carr 72.5 21 0.00046 31.4 8.2 88 141-230 7-110 (256)
472 TIGR03201 dearomat_had 6-hydro 72.4 17 0.00038 33.8 7.9 40 140-180 167-207 (349)
473 PRK07478 short chain dehydroge 72.4 12 0.00027 32.8 6.6 84 141-227 7-94 (254)
474 PRK06720 hypothetical protein; 72.0 25 0.00053 29.4 8.0 85 141-228 17-105 (169)
475 PRK12742 oxidoreductase; Provi 71.7 29 0.00063 29.9 8.8 78 141-228 7-87 (237)
476 PRK08264 short chain dehydroge 71.7 16 0.00035 31.6 7.1 74 141-226 7-83 (238)
477 TIGR02415 23BDH acetoin reduct 71.7 14 0.00031 32.3 6.8 86 143-231 3-92 (254)
478 cd08232 idonate-5-DH L-idonate 71.6 28 0.00062 31.9 9.1 41 140-180 166-207 (339)
479 PRK06935 2-deoxy-D-gluconate 3 71.5 21 0.00045 31.5 7.9 84 141-228 16-103 (258)
480 PRK05693 short chain dehydroge 71.2 16 0.00034 32.7 7.1 79 142-229 3-85 (274)
481 PRK05653 fabG 3-ketoacyl-(acyl 71.1 26 0.00056 30.2 8.3 86 141-229 6-95 (246)
482 PRK07024 short chain dehydroge 71.1 12 0.00025 33.1 6.1 82 141-226 3-88 (257)
483 cd08255 2-desacetyl-2-hydroxye 71.0 42 0.0009 29.7 9.8 42 140-181 98-140 (277)
484 KOG1209|consensus 71.0 9.2 0.0002 33.6 5.0 81 140-228 7-93 (289)
485 PRK09135 pteridine reductase; 70.8 42 0.00091 29.0 9.6 85 141-227 7-96 (249)
486 cd08230 glucose_DH Glucose deh 70.8 30 0.00066 32.2 9.2 40 140-180 173-216 (355)
487 cd08294 leukotriene_B4_DH_like 70.4 23 0.0005 32.3 8.1 41 140-181 144-186 (329)
488 COG1748 LYS9 Saccharopine dehy 70.3 13 0.00029 35.5 6.5 75 141-227 2-80 (389)
489 PRK08263 short chain dehydroge 70.1 15 0.00032 32.9 6.6 84 141-230 4-91 (275)
490 PF11899 DUF3419: Protein of u 69.9 11 0.00024 36.0 5.9 41 141-183 37-77 (380)
491 TIGR01963 PHB_DH 3-hydroxybuty 69.9 16 0.00035 31.8 6.8 83 142-227 3-89 (255)
492 PRK08703 short chain dehydroge 69.7 17 0.00037 31.6 6.8 84 141-226 7-97 (239)
493 PLN03154 putative allyl alcoho 69.6 24 0.00052 33.0 8.2 40 140-180 159-200 (348)
494 COG1004 Ugd Predicted UDP-gluc 69.6 1.1E+02 0.0024 29.5 12.5 67 255-321 96-173 (414)
495 PLN02827 Alcohol dehydrogenase 69.4 20 0.00043 34.0 7.7 41 140-180 194-235 (378)
496 PF05206 TRM13: Methyltransfer 69.3 7.3 0.00016 35.2 4.3 35 141-175 20-59 (259)
497 PRK07825 short chain dehydroge 69.2 17 0.00038 32.3 6.9 82 141-229 6-91 (273)
498 PRK12824 acetoacetyl-CoA reduc 69.1 23 0.0005 30.6 7.6 86 141-229 3-93 (245)
499 PRK06484 short chain dehydroge 69.1 20 0.00044 35.3 7.9 80 141-226 6-89 (520)
500 PRK05875 short chain dehydroge 68.7 21 0.00045 31.7 7.3 85 141-226 8-96 (276)
No 1
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=100.00 E-value=6.9e-55 Score=425.63 Aligned_cols=282 Identities=29% Similarity=0.464 Sum_probs=258.7
Q ss_pred ccHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEeccee
Q psy7093 24 NVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWN 103 (322)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~ 103 (322)
.|++++++++...|+++|+++|+.+|++|++|+++.++..++ .+.+.++++++.++++++++||.+|+|+|||+|+++
T Consensus 3 ~~~~~~l~~~~~~l~~~g~~~~~~~a~~Ll~~~l~~~~~~l~--~~~~~~l~~~~~~~~~~~~~rr~~~ePlqYI~G~~~ 80 (506)
T PRK01544 3 YSIKQILSDATDKLNKIGISSPQLEARILLQHVINKPIEYLL--INLDEQLNEAEIEAFEKLLERRLKHEPIAYITGVKE 80 (506)
T ss_pred ccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcCHHHHh--hccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcCE
Confidence 468899999999999999999999999999999999988777 578889999999999999999999999999999999
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccC----------------------CCCCCeEEEEcCchhHHHHHHHHhC
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESS----------------------NHTPTRMIEIGSGTGAITISLLKHF 161 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~----------------------~~~~~~iLDlg~GsG~~~~~la~~~ 161 (322)
|+|++|.|+++|||||||||.+++.+++.+... ...+.+|||+|||||++++.+++.+
T Consensus 81 F~g~~f~V~~~VLIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~ 160 (506)
T PRK01544 81 FYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCEL 160 (506)
T ss_pred EcCcEEEeCCCcccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHC
Confidence 999999999999999999999999998765310 1123589999999999999999998
Q ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhc
Q psy7093 162 PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIAL 241 (322)
Q Consensus 162 ~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~ 241 (322)
|+++|+++|+|+.+++.|++|+..+++.++++++++|+ ++.+ ..++||+|||||||++..+...+..++..
T Consensus 161 p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~-----~~~~----~~~~fDlIvsNPPYi~~~~~~~l~~~v~~ 231 (506)
T PRK01544 161 PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNW-----FENI----EKQKFDFIVSNPPYISHSEKSEMAIETIN 231 (506)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecch-----hhhC----cCCCccEEEECCCCCCchhhhhcCchhhc
Confidence 99999999999999999999999998888899999998 5443 34589999999999999988889999999
Q ss_pred ccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 242 YEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 242 ~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
|||..||+||++|+++|+.+++.+.++|+|||.+++|+|..|++.+.+++.+.| |..+.+++|++|++||+.+..
T Consensus 232 ~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~~q~~~v~~~~~~~g----~~~~~~~~D~~g~~R~v~~~~ 306 (506)
T PRK01544 232 YEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHG----YNIESVYKDLQGHSRVILISP 306 (506)
T ss_pred cCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECCchHHHHHHHHHhcC----CCceEEEecCCCCceEEEecc
Confidence 999999999999999999999999999999999999999999999999999875 678899999999999998764
No 2
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=100.00 E-value=2.3e-54 Score=395.19 Aligned_cols=282 Identities=30% Similarity=0.456 Sum_probs=256.0
Q ss_pred ccHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecce
Q psy7093 24 NVVDNVLKEWTAKFEQAKI-PEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEW 102 (322)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~~-~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~ 102 (322)
||+++++.++...|+++|+ .+|..++++|++|+++.++..++ .+.+.++++++.+++..+++||.+|+|++||+|++
T Consensus 1 m~~~~~~~~~~~~l~~~~~~~~~~~~a~~ll~~~l~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~r~~~~pl~yi~g~~ 78 (284)
T TIGR00536 1 MTIQEALRWASSALSRAIARENPWLEALLLLLHDLGRERDLLL--AFLTEELTPDEKERIFRLVLRRVKGVPVAYLLGSK 78 (284)
T ss_pred CcHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCcCHHHHh--hccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcc
Confidence 5789999999999999998 48999999999999999988776 57888999999999999999999999999999999
Q ss_pred eecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 103 NFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 103 ~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
+|+|++|.+++++|+|||+|+.+++.+++.+.... +..+|||+|||||++++.++..+|+.+|+|+|+|+.+++.|++|
T Consensus 79 ~f~g~~f~v~~~vliPr~ete~lv~~~l~~~~~~~-~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n 157 (284)
T TIGR00536 79 EFYGLEFFVNEHVLIPRPETEELVEKALASLISQN-PILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEEN 157 (284)
T ss_pred eEcCeEEEECCCCcCCCCccHHHHHHHHHHhhhcC-CCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 99999999999999999999999999887664321 12589999999999999999998889999999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+..+++.++++++++|+ ++.+ ...+||+|++||||++..+...+ +++..|||..||+||.+|+++|+.++
T Consensus 158 ~~~~~~~~~v~~~~~d~-----~~~~----~~~~fDlIvsNPPyi~~~~~~~~-~~~~~~eP~~AL~gg~dgl~~~~~ii 227 (284)
T TIGR00536 158 AEKNQLEHRVEFIQSNL-----FEPL----AGQKIDIIVSNPPYIDEEDLADL-PNVVRFEPLLALVGGDDGLNILRQII 227 (284)
T ss_pred HHHcCCCCcEEEEECch-----hccC----cCCCccEEEECCCCCCcchhhcC-CcccccCcHHHhcCCCcHHHHHHHHH
Confidence 99999877899999999 5543 23479999999999999887777 77888999999999999999999999
Q ss_pred HHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEEc
Q psy7093 263 VFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~~ 321 (322)
..+.++|+|||++++|+|+.|...+.+++...+ +|..+++++|++|++|++.++++
T Consensus 228 ~~a~~~L~~gG~l~~e~g~~q~~~~~~~~~~~~---~~~~~~~~~D~~g~~R~~~~~~~ 283 (284)
T TIGR00536 228 ELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKF---TWYDVENGRDLNGKERVVLGFYH 283 (284)
T ss_pred HHHHHhccCCCEEEEEECccHHHHHHHHHHhcC---CCceeEEecCCCCCceEEEEEec
Confidence 999999999999999999999999999998532 37889999999999999998764
No 3
>KOG2904|consensus
Probab=100.00 E-value=3.4e-54 Score=374.10 Aligned_cols=289 Identities=33% Similarity=0.514 Sum_probs=256.0
Q ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecceeecCe
Q psy7093 28 NVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDL 107 (322)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~ 107 (322)
+....|+..|+++|+++.+.+.++|.+|+++.. ...+.++..+.++...|++.++.++.+|+++.|+|||+|.++|.++
T Consensus 37 ~~~~~W~~~l~~~~~e~~k~~~~~i~shvL~~K-f~si~ds~~~~pl~~~ql~~i~~~~~~R~~r~PlQYIlg~~~F~~l 115 (328)
T KOG2904|consen 37 ELLLPWTRTLEQAGEESSKLSYKWIVSHVLPDK-FWSIEDSIVDDPLVILQLESIRWACLQRYKRMPLQYILGSQPFGDL 115 (328)
T ss_pred HhhchHHHHHHHhcCchhhhhhHHHHHhhhhhh-hccccchhhccccchhHHHHHHHHHHHHHhcCChhheeccCccCCc
Confidence 444589999999999999999999999999976 5666667788999999999999999999999999999999999999
Q ss_pred EEEeCCCCcccCchhHHHHHHHHHHhccCCC-CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc
Q psy7093 108 TLKMTPPVFIPRSETEELIDIITDKLESSNH-TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH 186 (322)
Q Consensus 108 ~~~v~~~~~iprp~te~lv~~i~~~~~~~~~-~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~ 186 (322)
++.+.|+|||||||||++++++++.+..... ++..|||+||||||+++++++.+|+..|+|+|.|+.|+.+|.+|++++
T Consensus 116 ~l~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~ 195 (328)
T KOG2904|consen 116 DLVCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRL 195 (328)
T ss_pred eEEecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHH
Confidence 9999999999999999999999998875432 335799999999999999999999999999999999999999999999
Q ss_pred CCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHh
Q psy7093 187 NVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGS 266 (322)
Q Consensus 187 ~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~ 266 (322)
++.+++.+++.+...+. +... ....+++|+++|||||+...++..+.++|+.|||..||+||.+|++++..+...+.
T Consensus 196 ~l~g~i~v~~~~me~d~-~~~~--~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~ 272 (328)
T KOG2904|consen 196 KLSGRIEVIHNIMESDA-SDEH--PLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLAT 272 (328)
T ss_pred hhcCceEEEeccccccc-cccc--ccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhH
Confidence 99999999866541111 2221 23568999999999999999999999999999999999999999999999999999
Q ss_pred ccCccCcEEEEEEc--CCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEEc
Q psy7093 267 NYLKPNGSIFLETN--HDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 267 ~~Lk~gG~l~~e~~--~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~~ 321 (322)
++|+|||.+++|++ ..+...++.++..... ..+..+.+..|++|++|||++.+.
T Consensus 273 R~Lq~gg~~~le~~~~~~~~~lv~~~m~s~~~-d~~~~~~v~~Df~~~~Rfv~i~r~ 328 (328)
T KOG2904|consen 273 RMLQPGGFEQLELVERKEHSYLVRIWMISLKD-DSNGKAAVVSDFAGRPRFVIIHRI 328 (328)
T ss_pred hhcccCCeEEEEecccccCcHHHHHHHHhchh-hccchhheeecccCCcceEEEEeC
Confidence 99999999999998 7777878888765421 246778999999999999998763
No 4
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-52 Score=380.57 Aligned_cols=277 Identities=32% Similarity=0.524 Sum_probs=254.7
Q ss_pred ccHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEeccee
Q psy7093 24 NVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWN 103 (322)
Q Consensus 24 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~ 103 (322)
||++++++++.+.|+++| .++..+++.++.+.++.++..+. .+....++.++.+++.+++.||.+|+|++||+|.++
T Consensus 1 ~~~~~~l~~a~~~l~~~~-~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~rr~~~~P~~yi~g~~~ 77 (280)
T COG2890 1 MTIRQALREAVSRLSAAG-GTPNLDAELLLLHLLGKPRDQLL--AHPEAELSEEELERLRELLERRAEGEPVAYILGSAE 77 (280)
T ss_pred CcHHHHHHHHHHHHHhcC-CCCcccHHHHHHHHhCCCHHHHh--hccccccCHHHHHHHHHHHHHHHCCCCHhHhhccCe
Confidence 689999999999999999 77888999999999998877666 678888999999999999999999999999999999
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
|++++|.++++|++|||+|+.+++.++....... .+|||+|||||+++++++++.|.++|+|+|+|+.|++.|++|+
T Consensus 78 f~gl~~~v~~~vliPr~dTe~Lve~~l~~~~~~~---~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na 154 (280)
T COG2890 78 FGGLRFKVDEGVLIPRPDTELLVEAALALLLQLD---KRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENA 154 (280)
T ss_pred ecceeeeeCCCceecCCchHHHHHHHHHhhhhcC---CcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHH
Confidence 9999999999999999999999999885444431 2799999999999999999999999999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
..+++ .++.++++|+ ++.+ .++||+|||||||++.. ...+.+++..|||..||++|.+|+++|++++.
T Consensus 155 ~~~~l-~~~~~~~~dl-----f~~~-----~~~fDlIVsNPPYip~~-~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~ 222 (280)
T COG2890 155 ERNGL-VRVLVVQSDL-----FEPL-----RGKFDLIVSNPPYIPAE-DPELLPEVVRYEPLLALVGGGDGLEVYRRILG 222 (280)
T ss_pred HHcCC-ccEEEEeeec-----cccc-----CCceeEEEeCCCCCCCc-ccccChhhhccCHHHHHccCccHHHHHHHHHH
Confidence 99998 5688888899 6665 34999999999999998 67788999999999999999999999999999
Q ss_pred HHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEEc
Q psy7093 264 FGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~~ 321 (322)
++.++|+|||++++|+|.+|.+.+.+++.+.++ |..+.+.+|+.|.+|++.+++.
T Consensus 223 ~a~~~l~~~g~l~le~g~~q~~~v~~~~~~~~~---~~~v~~~~d~~g~~rv~~~~~~ 277 (280)
T COG2890 223 EAPDILKPGGVLILEIGLTQGEAVKALFEDTGF---FEIVETLKDLFGRDRVVLAKLR 277 (280)
T ss_pred hhHHHcCCCcEEEEEECCCcHHHHHHHHHhcCC---ceEEEEEecCCCceEEEEEEec
Confidence 999999999999999999999999999999873 6788999999999999998863
No 5
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=100.00 E-value=6e-51 Score=381.91 Aligned_cols=259 Identities=25% Similarity=0.379 Sum_probs=233.6
Q ss_pred CChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchh
Q psy7093 43 PEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSET 122 (322)
Q Consensus 43 ~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~t 122 (322)
+.|+.++++|++|+++.++.+++ .+.+.++++++.++++++++||.+|+|+|||+|+++|+|.+|.+++++++|||+|
T Consensus 161 ~~p~~dA~~LL~~~l~~~r~~l~--~~~~~~l~~~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p~vLIPRpeT 238 (423)
T PRK14966 161 KLPKNEARMLLQYASEYTRVQLL--TRGGEEMPDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPET 238 (423)
T ss_pred cChHHHHHHHHHHHHCcCHHHHh--hCCcccCCHHHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCCCccCCCccH
Confidence 57889999999999999988877 6788899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
+.+++.+++.+... .+|||+|||||++++.+++..|+.+|+|+|+|+.+++.|++|++.++. +++++++|+
T Consensus 239 E~LVe~aL~~l~~~----~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gDl--- 309 (423)
T PRK14966 239 EHLVEAVLARLPEN----GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGSW--- 309 (423)
T ss_pred HHHHHHhhhccCCC----CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcch---
Confidence 99999998876532 689999999999999999988899999999999999999999998774 599999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
++... ...++||+|+|||||++..+...++++ ..|||..||+||++|+++|+++++.+.++|+|||.+++|+|..
T Consensus 310 --~e~~l--~~~~~FDLIVSNPPYI~~~e~~l~~~~-v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~~ 384 (423)
T PRK14966 310 --FDTDM--PSEGKWDIIVSNPPYIENGDKHLLQGD-LRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFD 384 (423)
T ss_pred --hcccc--ccCCCccEEEECCCCCCcchhhhcchh-hhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECcc
Confidence 44311 023579999999999998876444544 4699999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEEc
Q psy7093 283 HLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 283 ~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~~ 321 (322)
|.+.+.+++++.| |..+++.+|++|++|++.+++.
T Consensus 385 Q~e~V~~ll~~~G----f~~v~v~kDl~G~dR~v~~~~~ 419 (423)
T PRK14966 385 QGAAVRGVLAENG----FSGVETLPDLAGLDRVTLGKYM 419 (423)
T ss_pred HHHHHHHHHHHCC----CcEEEEEEcCCCCcEEEEEEEh
Confidence 9999999999875 6889999999999999998763
No 6
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=100.00 E-value=3.4e-48 Score=356.87 Aligned_cols=261 Identities=25% Similarity=0.404 Sum_probs=234.1
Q ss_pred ccccccHHHHHHHHHHHHHHcCC------CChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHH-cC
Q psy7093 20 ATKANVVDNVLKEWTAKFEQAKI------PEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRL-AR 92 (322)
Q Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~-~~ 92 (322)
.++.||++++++++...|+++|+ ++|+.++++|++|+++.++..++ .+.+.++++++.+++.++++||+ +|
T Consensus 10 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~l~--~~~~~~l~~~~~~~~~~~~~rr~~~~ 87 (307)
T PRK11805 10 VNELHTIRDLLRWAVSRFNAAGLFFGHGTDNAWDEAVQLVLHALHLPLDIPE--PFLDARLTPSEKARILELIERRINER 87 (307)
T ss_pred hhhhhHHHHHHHHHHHHHHhcCCccCCCCCCHHHHHHHHHHHHHCcCHHHHh--hcccCCCCHHHHHHHHHHHHHHHHCC
Confidence 34689999999999999998766 67999999999999999987776 57788899999999999999998 69
Q ss_pred CCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHH-hccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeC
Q psy7093 93 MPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDK-LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171 (322)
Q Consensus 93 ~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~-~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDi 171 (322)
+|+|||+|+++|+|++|.+++++|+|||+|+.+++.++.. +.... +.+|||+|||+|++++.++...|+.+|+++|+
T Consensus 88 ~Pl~yi~g~~~F~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~~--~~~VLDlG~GsG~iai~la~~~p~~~V~avDi 165 (307)
T PRK11805 88 IPAAYLTNEAWFCGLEFYVDERVLVPRSPIAELIEDGFAPWLEDPP--VTRILDLCTGSGCIAIACAYAFPDAEVDAVDI 165 (307)
T ss_pred ccHHHHcCcceEcCcEEEECCCCcCCCCchHHHHHHHHHHHhccCC--CCEEEEEechhhHHHHHHHHHCCCCEEEEEeC
Confidence 9999999999999999999999999999999999887753 33221 26899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCC
Q psy7093 172 SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGG 251 (322)
Q Consensus 172 s~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g 251 (322)
|+.+++.|++|++.+++.++++++++|+ ++.+ +.++||+|++||||++..++..+.+++. |||..||+||
T Consensus 166 s~~al~~A~~n~~~~~l~~~i~~~~~D~-----~~~l----~~~~fDlIvsNPPyi~~~~~~~l~~~~~-~eP~~AL~gg 235 (307)
T PRK11805 166 SPDALAVAEINIERHGLEDRVTLIESDL-----FAAL----PGRRYDLIVSNPPYVDAEDMADLPAEYR-HEPELALAAG 235 (307)
T ss_pred CHHHHHHHHHHHHHhCCCCcEEEEECch-----hhhC----CCCCccEEEECCCCCCccchhhcCHhhc-cCccceeeCC
Confidence 9999999999999999877899999998 5543 2457999999999999988888888885 9999999999
Q ss_pred CChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcC
Q psy7093 252 HDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 252 ~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~ 295 (322)
++|+++|+.+++.+.++|+|||.+++|+++.+. .+.+++...+
T Consensus 236 ~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~~~-~~~~~~~~~~ 278 (307)
T PRK11805 236 DDGLDLVRRILAEAPDYLTEDGVLVVEVGNSRV-HLEEAYPDVP 278 (307)
T ss_pred CchHHHHHHHHHHHHHhcCCCCEEEEEECcCHH-HHHHHHhhCC
Confidence 999999999999999999999999999999866 4888887754
No 7
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=100.00 E-value=9.4e-48 Score=350.86 Aligned_cols=257 Identities=26% Similarity=0.388 Sum_probs=230.9
Q ss_pred cHHHHHHHHHHHHHHcC------CCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHH-cCCCcee
Q psy7093 25 VVDNVLKEWTAKFEQAK------IPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRL-ARMPVQY 97 (322)
Q Consensus 25 ~~~~~~~~~~~~l~~~~------~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~-~~~p~~y 97 (322)
|+++++.++...|++++ +++|+.+|++|++|+++.++..++ .+.+.++++++.+++.++++||. +|+|+||
T Consensus 3 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~ll~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~rr~~~~~Pl~y 80 (284)
T TIGR03533 3 TIRDFLRWAVSRFNAAGLFFGHGTDNAWDEAVYLVLHALHLPLDILE--PFLDARLTPSEKERILELIERRIEERIPVAY 80 (284)
T ss_pred cHHHHHHHHHHHHHhcCCcccCCCCCHHHHHHHHHHHHHCcCHHHHh--hcccCCCCHHHHHHHHHHHHHHHhCCCcHHH
Confidence 57888998999998854 478999999999999999988777 57788999999999999999998 6999999
Q ss_pred EecceeecCeEEEeCCCCcccCchhHHHHHHHHHH-hccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHH
Q psy7093 98 IIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDK-LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHAC 176 (322)
Q Consensus 98 i~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~-~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al 176 (322)
|+|+++|+|++|.+++++|+|||+|+.+++..+.. +... .+.+|||+|||||++++.+++..|+.+|+|+|+|+.++
T Consensus 81 i~g~~~f~g~~f~v~~~vlipr~~te~lv~~~l~~~~~~~--~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al 158 (284)
T TIGR03533 81 LTNEAWFAGLEFYVDERVLIPRSPIAELIEDGFAPWLEPE--PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDAL 158 (284)
T ss_pred HcCCCeecCcEEEECCCCccCCCchHHHHHHHHHHHhccC--CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHH
Confidence 99999999999999999999999999999887763 3322 23689999999999999999998889999999999999
Q ss_pred HHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhH
Q psy7093 177 DLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLN 256 (322)
Q Consensus 177 ~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~ 256 (322)
+.|++|+..+++.++++++++|+ ++.+ +.++||+|++||||++..++..+++++ .|||..||+||++|++
T Consensus 159 ~~A~~n~~~~~~~~~i~~~~~D~-----~~~~----~~~~fD~Iv~NPPy~~~~~~~~l~~~~-~~ep~~al~gg~dGl~ 228 (284)
T TIGR03533 159 AVAEINIERHGLEDRVTLIQSDL-----FAAL----PGRKYDLIVSNPPYVDAEDMADLPAEY-HHEPELALASGEDGLD 228 (284)
T ss_pred HHHHHHHHHcCCCCcEEEEECch-----hhcc----CCCCccEEEECCCCCCccchhhCCHhh-hcCHHHHhcCCCcHHH
Confidence 99999999999877899999998 5543 345799999999999999888888888 5999999999999999
Q ss_pred HHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 257 IIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 257 ~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
+|+.++..+.++|+|||++++|+++.+ ..+.+++...++
T Consensus 229 ~~~~il~~a~~~L~~gG~l~~e~g~~~-~~v~~~~~~~~~ 267 (284)
T TIGR03533 229 LVRRILAEAADHLNENGVLVVEVGNSM-EALEEAYPDVPF 267 (284)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECcCH-HHHHHHHHhCCC
Confidence 999999999999999999999999977 689999988764
No 8
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=100.00 E-value=1.6e-46 Score=342.07 Aligned_cols=275 Identities=33% Similarity=0.560 Sum_probs=248.3
Q ss_pred cccHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecce
Q psy7093 23 ANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEW 102 (322)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~ 102 (322)
.|++++++.++.+.|++ ++.++++|++++++.++..+. .+.+..++.++.+++.+++.||.+|+|++|++|.+
T Consensus 1 ~~~~~~~~~~~~~~l~~-----~~~~~~~ll~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~g~~ 73 (275)
T PRK09328 1 MMTIAEALREATARLAS-----PRLDAELLLAHVLGLSRTDLL--LNPEEELTPEELERFRALVARRAAGEPLQYILGEA 73 (275)
T ss_pred CccHHHHHHHHHHHHhC-----cHHHHHHHHHHHHCcCHHHHh--hcccCCCCHHHHHHHHHHHHHHHcCCCHHHHceec
Confidence 36889999999988875 677999999999999887766 56778889999999999999999999999999999
Q ss_pred eecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 103 NFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 103 ~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
+||+..|.+++++++|||+|+.+++.+....... ++.+|||+|||+|++++.++...|..+++|+|+|+.+++.|++|
T Consensus 74 ~f~~~~~~~~~~~lipr~~te~l~~~~~~~~~~~--~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n 151 (275)
T PRK09328 74 EFWGLDFKVSPGVLIPRPETEELVEWALEALLLK--EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRN 151 (275)
T ss_pred eEcCcEEEECCCceeCCCCcHHHHHHHHHhcccc--CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHH
Confidence 9999999999999999999999999998665443 23789999999999999999999889999999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+. .....++.++++|+ +..+ ..++||+|++||||++......+.++++.|||..|+++|.+|+++|+.++
T Consensus 152 ~~-~~~~~~i~~~~~d~-----~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~ 221 (275)
T PRK09328 152 AK-HGLGARVEFLQGDW-----FEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRII 221 (275)
T ss_pred HH-hCCCCcEEEEEccc-----cCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHH
Confidence 98 33345699999998 5443 24689999999999999888888999999999999999999999999999
Q ss_pred HHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 263 VFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
+.+.++|+|||++++|+++.+.+.+.+++.+.| |..+++++|++|++|++.+++
T Consensus 222 ~~~~~~Lk~gG~l~~e~g~~~~~~~~~~l~~~g----f~~v~~~~d~~~~~r~~~~~~ 275 (275)
T PRK09328 222 EQAPRYLKPGGWLLLEIGYDQGEAVRALLAAAG----FADVETRKDLAGRDRVVLGRR 275 (275)
T ss_pred HHHHHhcccCCEEEEEECchHHHHHHHHHHhCC----CceeEEecCCCCCceEEEEEC
Confidence 999999999999999999999999999999865 788999999999999999864
No 9
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=100.00 E-value=2e-44 Score=323.40 Aligned_cols=242 Identities=22% Similarity=0.360 Sum_probs=214.8
Q ss_pred HHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCC
Q psy7093 35 AKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPP 114 (322)
Q Consensus 35 ~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~ 114 (322)
..|.++|+++|+.+|++|++|+.. .++++.+++||.+|+|+|||+|+++|++++|.++++
T Consensus 3 ~~~~~~g~~~~~~~a~~l~~~~~~--------------------~~~~~~~~~rr~~~~Pl~yi~g~~~f~g~~~~v~~~ 62 (251)
T TIGR03704 3 TRLRAAGCVFAEDEAALLVDAART--------------------PGELAAMVDRRVAGLPLEHVLGWAEFCGLRIAVDPG 62 (251)
T ss_pred hhHHhcCCCCHHHHHHHHHHhccC--------------------HHHHHHHHHHHHcCCCHHHhcccCeEcCeEEEECCC
Confidence 467899999999999999999831 367999999999999999999999999999999999
Q ss_pred CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q psy7093 115 VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQV 194 (322)
Q Consensus 115 ~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~ 194 (322)
+|+||++|+.+++.++..+.... .+.+|||+|||+|++++.+++..++.+|+++|+|+.+++.|++|+..++ +++
T Consensus 63 vf~pr~~Te~Lv~~~l~~~~~~~-~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~ 137 (251)
T TIGR03704 63 VFVPRRRTEFLVDEAAALARPRS-GTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTV 137 (251)
T ss_pred CcCCCccHHHHHHHHHHhhcccC-CCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEE
Confidence 99999999999999988765321 2258999999999999999998888899999999999999999998765 478
Q ss_pred EEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 195 FHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 195 ~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
+++|+ ++.++... .++||+|++||||++..+...++++++.|||..||+||.+|+++++.++..+.++|+|||+
T Consensus 138 ~~~D~-----~~~l~~~~-~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~ 211 (251)
T TIGR03704 138 HEGDL-----YDALPTAL-RGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGH 211 (251)
T ss_pred EEeec-----hhhcchhc-CCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCE
Confidence 89998 54443211 3579999999999999988889999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCC
Q psy7093 275 IFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFN 310 (322)
Q Consensus 275 l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~ 310 (322)
+++|++..|...+.++++++++ ...+..++|++
T Consensus 212 l~l~~~~~~~~~v~~~l~~~g~---~~~~~~~~~~~ 244 (251)
T TIGR03704 212 LLVETSERQAPLAVEAFARAGL---IARVASSEELY 244 (251)
T ss_pred EEEEECcchHHHHHHHHHHCCC---CceeeEccccc
Confidence 9999999999999999999875 45677788884
No 10
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=100.00 E-value=1.8e-39 Score=291.48 Aligned_cols=251 Identities=33% Similarity=0.585 Sum_probs=229.2
Q ss_pred HHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHH
Q psy7093 48 SIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELID 127 (322)
Q Consensus 48 ~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~ 127 (322)
++++|++|++++++...+ ......++.++.+++..++.+|..++|++|++|.++|++..+.+++++++|+|+++.+++
T Consensus 1 ~~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~ 78 (251)
T TIGR03534 1 DAELLLAHVLGKDRTDLL--LHPEKELTPEELARFEALLARRAKGEPVAYILGEREFYGLDFKVSPGVLIPRPDTEELVE 78 (251)
T ss_pred CHHHHHHHHHCcCHHHHh--hcccCCCCHHHHHHHHHHHHHHHcCCCHHHHcccceEeceEEEECCCcccCCCChHHHHH
Confidence 368899999998776555 456778999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccc
Q psy7093 128 IITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207 (322)
Q Consensus 128 ~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~ 207 (322)
.+++.+... +.+|||+|||+|+++..++..+|..+++|+|+++.+++.|+.|+...++. +++++++|+ ++.
T Consensus 79 ~~l~~~~~~---~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~-----~~~ 149 (251)
T TIGR03534 79 AALERLKKG---PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDW-----FEP 149 (251)
T ss_pred HHHHhcccC---CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECch-----hcc
Confidence 998877542 26899999999999999999988899999999999999999999988875 599999998 543
Q ss_pred cCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHH
Q psy7093 208 LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKI 287 (322)
Q Consensus 208 l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~ 287 (322)
+ ..++||+|++||||+...+...+..+++.|||..++++|.+|+..+..+++.+.++|+|||.+++++++.+.+.+
T Consensus 150 ~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~~~~~~ 225 (251)
T TIGR03534 150 L----PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAV 225 (251)
T ss_pred C----cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECccHHHHH
Confidence 2 357899999999999988888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCceeeEEEecCCCCCCeEEE
Q psy7093 288 KEWLGICGHHMKLKLVENYKDFNNKDRFVE 317 (322)
Q Consensus 288 ~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~ 317 (322)
.+++.+.| |..+++++|++|.+|+++
T Consensus 226 ~~~l~~~g----f~~v~~~~d~~~~~r~~~ 251 (251)
T TIGR03534 226 RALFEAAG----FADVETRKDLAGKDRVVL 251 (251)
T ss_pred HHHHHhCC----CCceEEEeCCCCCcCeeC
Confidence 99999875 789999999999999974
No 11
>PLN02672 methionine S-methyltransferase
Probab=100.00 E-value=8.5e-37 Score=314.44 Aligned_cols=258 Identities=14% Similarity=0.227 Sum_probs=205.4
Q ss_pred cHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecceee
Q psy7093 25 VVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNF 104 (322)
Q Consensus 25 ~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f 104 (322)
+-.+++...+..|.+..-+..+..|+.+|+.+-..-+.. .-+. ..-+..+-|..+.-+.-..|+++|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~----~~~~~~~~~~~~~~~~~~~G~~~F 84 (1082)
T PLN02672 18 SGDAAYGAFKGVLERLEDPTTRSDARKLLSAVEKRVAAS---------EAGE----DCFATYHFRIHDLVLDDYEGFRNR 84 (1082)
T ss_pred CcHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHhccc---------Cccc----chhhhcceEEeeEEEcCCCCeEEe
Confidence 445677777777777777788888998888875532211 0111 122233445555444444599999
Q ss_pred cCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 105 ~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
|+++|.+.|+||||||+||.+++. ++..+....++.+|||+|||||++++.+++.+|..+|+|+|+|+.|++.|++|++
T Consensus 85 ~~l~~~V~p~VLIPRpeTE~lve~-L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~ 163 (1082)
T PLN02672 85 KKLTMMEIPSIFIPEDWSFTFYEG-LNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLY 163 (1082)
T ss_pred cCCceeeCCCcccCchhHHHHHHH-HHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 999999999999999999999998 4443221112368999999999999999999988999999999999999999999
Q ss_pred HcCC---------------CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccc-----
Q psy7093 185 MHNV---------------ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYED----- 244 (322)
Q Consensus 185 ~~~l---------------~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep----- 244 (322)
.+++ .++++++++|+ ++.+.. ...+||+|||||||++..++..|+++|+.|||
T Consensus 164 ~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl-----~~~~~~--~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~ 236 (1082)
T PLN02672 164 LNALDDDGLPVYDGEGKTLLDRVEFYESDL-----LGYCRD--NNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLY 236 (1082)
T ss_pred HcCcccccccccccccccccccEEEEECch-----hhhccc--cCCceEEEEECCCcCCCcchhhcChhhhhcccccccc
Confidence 8653 24799999999 554421 12379999999999999999999999998875
Q ss_pred ----cccccC---CCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHH-HHHHHcCCCCceeeEEEec
Q psy7093 245 ----IKALDG---GHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIK-EWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 245 ----~~al~~---g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~-~~l~~~~~~~~~~~v~~~~ 307 (322)
..||+| |+|||++|++++.++.++|+|||++++|+|++|++.+. +++++.| |..+++|+
T Consensus 237 ~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEiG~~q~~~v~~~l~~~~g----f~~~~~~~ 303 (1082)
T PLN02672 237 SLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNMGGRPGQAVCERLFERRG----FRITKLWQ 303 (1082)
T ss_pred ccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEECccHHHHHHHHHHHHCC----CCeeEEee
Confidence 799987 59999999999999999999999999999999999999 6998875 67777775
No 12
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.91 E-value=1.5e-23 Score=177.64 Aligned_cols=140 Identities=34% Similarity=0.637 Sum_probs=115.2
Q ss_pred eEEEeCCCCcccC---chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 107 LTLKMTPPVFIPR---SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 107 ~~~~v~~~~~ipr---p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
++|...|++|.|+ +.|+.+++.+... +..+|||+|||+|.+++.+++..|..+|+++|+++.|++.|++|+
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~ 75 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNA 75 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHH
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 5788999999843 4566666665554 127899999999999999999999889999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
..+++.+ ++++++|+ ++.. ..++||+|++|||+.. ++.+|.++.+.+++
T Consensus 76 ~~n~~~~-v~~~~~d~-----~~~~----~~~~fD~Iv~NPP~~~---------------------~~~~~~~~~~~~i~ 124 (170)
T PF05175_consen 76 ERNGLEN-VEVVQSDL-----FEAL----PDGKFDLIVSNPPFHA---------------------GGDDGLDLLRDFIE 124 (170)
T ss_dssp HHTTCTT-EEEEESST-----TTTC----CTTCEEEEEE---SBT---------------------TSHCHHHHHHHHHH
T ss_pred HhcCccc-cccccccc-----cccc----cccceeEEEEccchhc---------------------ccccchhhHHHHHH
Confidence 9999887 99999999 6554 3579999999999543 34468889999999
Q ss_pred HHhccCccCcEEEEEEcCCC
Q psy7093 264 FGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~~ 283 (322)
++.++|+|||.+++.+....
T Consensus 125 ~a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 125 QARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp HHHHHEEEEEEEEEEEETTS
T ss_pred HHHHhccCCCEEEEEeecCC
Confidence 99999999999988776544
No 13
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.88 E-value=1.2e-21 Score=172.49 Aligned_cols=169 Identities=21% Similarity=0.340 Sum_probs=131.6
Q ss_pred CeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM 185 (322)
Q Consensus 106 ~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~ 185 (322)
...+...+.++-+.-++-.+..++ .... ..+|||+|||+|.+++.+|++.+.+++++||+++.+.+.|++|++.
T Consensus 17 ~~~I~q~~~~~~~~~DaiLL~~~~----~~~~--~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l 90 (248)
T COG4123 17 QFFIIQDRCGFRYGTDAILLAAFA----PVPK--KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL 90 (248)
T ss_pred ceEEEeCCCccccccHHHHHHhhc----cccc--CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh
Confidence 344455556664444433333332 2221 3799999999999999999998889999999999999999999999
Q ss_pred cCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCC--CCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 186 HNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDI--PKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 186 ~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~--~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
+++.+++++++.|+ ..+.......+||+|||||||...... ..-.....+||.... ++.+++
T Consensus 91 n~l~~ri~v~~~Di------~~~~~~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~----------le~~i~ 154 (248)
T COG4123 91 NPLEERIQVIEADI------KEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLD----------LEDLIR 154 (248)
T ss_pred CcchhceeEehhhH------HHhhhcccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCC----------HHHHHH
Confidence 99999999999998 222223344579999999999988776 223345556666554 458999
Q ss_pred HHhccCccCcEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 264 FGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
.+..+|||||.+.+.+.+....++.+++.+.++
T Consensus 155 ~a~~~lk~~G~l~~V~r~erl~ei~~~l~~~~~ 187 (248)
T COG4123 155 AAAKLLKPGGRLAFVHRPERLAEIIELLKSYNL 187 (248)
T ss_pred HHHHHccCCCEEEEEecHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999998775
No 14
>PRK14967 putative methyltransferase; Provisional
Probab=99.88 E-value=5.4e-21 Score=169.03 Aligned_cols=173 Identities=25% Similarity=0.395 Sum_probs=139.3
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
+-+..+.+.+++|.|+.+++.+++.+... ... ++.+|||+|||+|.+++.+++. +..+|+++|+|+.+++.|++|+
T Consensus 4 ~~~~~~~~~~g~~~p~~ds~~l~~~l~~~-~~~--~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~ 79 (223)
T PRK14967 4 TPPDALLRAPGVYRPQEDTQLLADALAAE-GLG--PGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNA 79 (223)
T ss_pred CCCceeecCCCCcCCCCcHHHHHHHHHhc-ccC--CCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHH
Confidence 34678899999999999998887766543 222 2369999999999999999886 4459999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
..+++ +++++++|+ .+.+ ..++||+|++||||++..... ...++|..++.+|.+|...++.+++
T Consensus 80 ~~~~~--~~~~~~~d~-----~~~~----~~~~fD~Vi~npPy~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~ 143 (223)
T PRK14967 80 LLAGV--DVDVRRGDW-----ARAV----EFRPFDVVVSNPPYVPAPPDA-----PPSRGPARAWDAGPDGRAVLDRLCD 143 (223)
T ss_pred HHhCC--eeEEEECch-----hhhc----cCCCeeEEEECCCCCCCCccc-----ccccChhHhhhCCCcHHHHHHHHHH
Confidence 88876 388899998 4332 356899999999998765432 2345677888899999999999999
Q ss_pred HHhccCccCcEEEEEEcCC-CHHHHHHHHHHcCC
Q psy7093 264 FGSNYLKPNGSIFLETNHD-HLDKIKEWLGICGH 296 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~-~~~~~~~~l~~~~~ 296 (322)
.+.++|+|||.+++..... +...+.+.+++.++
T Consensus 144 ~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g~ 177 (223)
T PRK14967 144 AAPALLAPGGSLLLVQSELSGVERTLTRLSEAGL 177 (223)
T ss_pred HHHHhcCCCcEEEEEEecccCHHHHHHHHHHCCC
Confidence 9999999999999876653 66677777777663
No 15
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.86 E-value=4.8e-20 Score=157.48 Aligned_cols=157 Identities=28% Similarity=0.352 Sum_probs=123.2
Q ss_pred CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEE
Q psy7093 115 VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQV 194 (322)
Q Consensus 115 ~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~ 194 (322)
+++||+++..+.+.+ ...+ +.+|||+|||+|.++..++...+ +|+++|+|+.+++.|++|+..++. ++++
T Consensus 1 ~~~~~~d~~~l~~~l-~~~~-----~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~--~~~~ 70 (179)
T TIGR00537 1 VYEPAEDSLLLEANL-RELK-----PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNV--GLDV 70 (179)
T ss_pred CCCCCccHHHHHHHH-HhcC-----CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCC--ceEE
Confidence 578999995555443 3222 26899999999999999998743 899999999999999999988775 3889
Q ss_pred EEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 195 FHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 195 ~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
+++|+ .+.. .++||+|++||||++..+.... ......++.+|.+|...++.+++++.++|+|||.
T Consensus 71 ~~~d~-----~~~~-----~~~fD~Vi~n~p~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~ 135 (179)
T TIGR00537 71 VMTDL-----FKGV-----RGKFDVILFNPPYLPLEDDLRR-----GDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGR 135 (179)
T ss_pred EEccc-----cccc-----CCcccEEEECCCCCCCcchhcc-----cchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCE
Confidence 99998 4432 3589999999999876543221 1122356778889999999999999999999999
Q ss_pred EEEEEcCC-CHHHHHHHHHHcCC
Q psy7093 275 IFLETNHD-HLDKIKEWLGICGH 296 (322)
Q Consensus 275 l~~e~~~~-~~~~~~~~l~~~~~ 296 (322)
+++..... +...+.+.+++.|+
T Consensus 136 ~~~~~~~~~~~~~~~~~l~~~gf 158 (179)
T TIGR00537 136 VQLIQSSLNGEPDTFDKLDERGF 158 (179)
T ss_pred EEEEEeccCChHHHHHHHHhCCC
Confidence 98876554 48888999988873
No 16
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=6.6e-20 Score=164.61 Aligned_cols=173 Identities=24% Similarity=0.403 Sum_probs=126.9
Q ss_pred cCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 105 ~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
.+.+|...||||.. -....=-+.+++.+..... .+|||+|||.|.+++.+++..|..+++.+|+|..|++.|++|+.
T Consensus 127 ~~~~~~t~pGVFS~-~~lD~GS~lLl~~l~~~~~--~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~ 203 (300)
T COG2813 127 HELTFKTLPGVFSR-DKLDKGSRLLLETLPPDLG--GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA 203 (300)
T ss_pred CceEEEeCCCCCcC-CCcChHHHHHHHhCCccCC--CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH
Confidence 46788999999983 2222333444555554432 58999999999999999999999999999999999999999999
Q ss_pred HcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHH
Q psy7093 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVF 264 (322)
Q Consensus 185 ~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~ 264 (322)
.+++++. .++.+|. +++. .++||+|||||||+...+. ...+-.+++..
T Consensus 204 ~N~~~~~-~v~~s~~-----~~~v-----~~kfd~IisNPPfh~G~~v---------------------~~~~~~~~i~~ 251 (300)
T COG2813 204 ANGVENT-EVWASNL-----YEPV-----EGKFDLIISNPPFHAGKAV---------------------VHSLAQEIIAA 251 (300)
T ss_pred HcCCCcc-EEEEecc-----cccc-----cccccEEEeCCCccCCcch---------------------hHHHHHHHHHH
Confidence 9998764 7888888 5554 3499999999999965542 12335699999
Q ss_pred HhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 265 GSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 265 ~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
+.++|++||.|++... ++.. ....|++. |..+++.. ..+..+++.++|
T Consensus 252 A~~~L~~gGeL~iVan-~~l~-y~~~L~~~-----Fg~v~~la-~~~gf~Vl~a~k 299 (300)
T COG2813 252 AARHLKPGGELWIVAN-RHLP-YEKKLKEL-----FGNVEVLA-KNGGFKVLRAKK 299 (300)
T ss_pred HHHhhccCCEEEEEEc-CCCC-hHHHHHHh-----cCCEEEEE-eCCCEEEEEEec
Confidence 9999999999999665 3322 34444443 34455443 335555555554
No 17
>PRK14968 putative methyltransferase; Provisional
Probab=99.84 E-value=3.7e-19 Score=152.57 Aligned_cols=181 Identities=25% Similarity=0.411 Sum_probs=142.3
Q ss_pred CCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q psy7093 112 TPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQ 191 (322)
Q Consensus 112 ~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~ 191 (322)
++++|.|++++..+++.+.. . ++.+|||+|||+|.++..++.. +.+++++|+|+.+++.+++|+..+++.++
T Consensus 2 ~~~~~~p~~~~~~l~~~~~~----~--~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~ 73 (188)
T PRK14968 2 NDEVYEPAEDSFLLAENAVD----K--KGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNN 73 (188)
T ss_pred CCcccCcchhHHHHHHhhhc----c--CCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCc
Confidence 57889999998888776643 2 2368999999999999999988 68999999999999999999988887654
Q ss_pred -EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCc
Q psy7093 192 -LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLK 270 (322)
Q Consensus 192 -i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk 270 (322)
+.++++|+ .+.+ ...+||+|++||||.+........ -....++.+|.+|...+..+++++.++|+
T Consensus 74 ~~~~~~~d~-----~~~~----~~~~~d~vi~n~p~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk 139 (188)
T PRK14968 74 GVEVIRSDL-----FEPF----RGDKFDVILFNPPYLPTEEEEEWD-----DWLNYALSGGKDGREVIDRFLDEVGRYLK 139 (188)
T ss_pred ceEEEeccc-----cccc----cccCceEEEECCCcCCCCchhhhh-----hhhhhhhccCcChHHHHHHHHHHHHHhcC
Confidence 88999998 5443 234899999999998754322211 11234667888889999999999999999
Q ss_pred cCcEEEEEEcCC-CHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEE
Q psy7093 271 PNGSIFLETNHD-HLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVEL 318 (322)
Q Consensus 271 ~gG~l~~e~~~~-~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~ 318 (322)
|||.+++.++.. ..+.+.+++.+.| |..+.+..+....+++..+
T Consensus 140 ~gG~~~~~~~~~~~~~~l~~~~~~~g----~~~~~~~~~~~~~~~~~~~ 184 (188)
T PRK14968 140 PGGRILLLQSSLTGEDEVLEYLEKLG----FEAEVVAEEKFPFEELIVL 184 (188)
T ss_pred CCeEEEEEEcccCCHHHHHHHHHHCC----CeeeeeeecccCCceEEEE
Confidence 999999887754 4677889998886 6666666776777766653
No 18
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.83 E-value=3.9e-19 Score=167.21 Aligned_cols=142 Identities=20% Similarity=0.342 Sum_probs=109.2
Q ss_pred CeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM 185 (322)
Q Consensus 106 ~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~ 185 (322)
++++...++||.+. ....-.+.+++.++... ..+|||+|||+|.+++.+++.+|..+|+++|+|+.|++.|++|++.
T Consensus 198 ~~~~~~~~gVFs~~-~LD~GtrllL~~lp~~~--~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~ 274 (378)
T PRK15001 198 DWTIHNHANVFSRT-GLDIGARFFMQHLPENL--EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET 274 (378)
T ss_pred eEEEEecCCccCCC-CcChHHHHHHHhCCccc--CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 56777889999843 22222334445554432 2689999999999999999999999999999999999999999988
Q ss_pred cCCC--CcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 186 HNVA--NQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 186 ~~l~--~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
++.. .+++++.+|. ++.+ ..++||+|+|||||+..... .. .+..+++.
T Consensus 275 n~~~~~~~v~~~~~D~-----l~~~----~~~~fDlIlsNPPfh~~~~~---~~------------------~ia~~l~~ 324 (378)
T PRK15001 275 NMPEALDRCEFMINNA-----LSGV----EPFRFNAVLCNPPFHQQHAL---TD------------------NVAWEMFH 324 (378)
T ss_pred cCcccCceEEEEEccc-----cccC----CCCCEEEEEECcCcccCccC---CH------------------HHHHHHHH
Confidence 8643 3689999998 5443 34589999999999864321 11 23468999
Q ss_pred HHhccCccCcEEEEEEc
Q psy7093 264 FGSNYLKPNGSIFLETN 280 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~ 280 (322)
.+.++|+|||.++++..
T Consensus 325 ~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 325 HARRCLKINGELYIVAN 341 (378)
T ss_pred HHHHhcccCCEEEEEEe
Confidence 99999999999999753
No 19
>KOG3191|consensus
Probab=99.82 E-value=5.1e-19 Score=146.10 Aligned_cols=185 Identities=24% Similarity=0.341 Sum_probs=144.7
Q ss_pred CCcccCchhHHHHHHHHHHhccC-CCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q psy7093 114 PVFIPRSETEELIDIITDKLESS-NHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQ 191 (322)
Q Consensus 114 ~~~iprp~te~lv~~i~~~~~~~-~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~ 191 (322)
.|+-|..+|-.+++.+.+....- ...+..++|+|||||+.+..+++.. |++...++|++|.|++..++.++.++..
T Consensus 17 dVYEPaEDTFlLlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-- 94 (209)
T KOG3191|consen 17 DVYEPAEDTFLLLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-- 94 (209)
T ss_pred hccCccchhhHHHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--
Confidence 67889999999988776544321 1124789999999999999999875 5678899999999999999999988754
Q ss_pred EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc
Q psy7093 192 LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP 271 (322)
Q Consensus 192 i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~ 271 (322)
+..++.|+ ...+ ..++.|+++.||||++..+.+-- ..--..|+.||.+|.++..+++.+....|.|
T Consensus 95 ~~~V~tdl-----~~~l----~~~~VDvLvfNPPYVpt~~~~i~-----~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp 160 (209)
T KOG3191|consen 95 IDVVRTDL-----LSGL----RNESVDVLVFNPPYVPTSDEEIG-----DEGIASAWAGGKDGREVTDRLLPQVPDILSP 160 (209)
T ss_pred cceeehhH-----Hhhh----ccCCccEEEECCCcCcCCcccch-----hHHHHHHHhcCcchHHHHHHHHhhhhhhcCc
Confidence 88999998 5555 34899999999999998764321 1122346779999999999999999999999
Q ss_pred CcEEEEEEc-CCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEE
Q psy7093 272 NGSIFLETN-HDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVEL 318 (322)
Q Consensus 272 gG~l~~e~~-~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~ 318 (322)
.|++++..- .+..+++.++++..| |....+++-.+|.+-..+.
T Consensus 161 ~Gv~Ylv~~~~N~p~ei~k~l~~~g----~~~~~~~~Rk~~~E~l~il 204 (209)
T KOG3191|consen 161 RGVFYLVALRANKPKEILKILEKKG----YGVRIAMQRKAGGETLSIL 204 (209)
T ss_pred CceEEeeehhhcCHHHHHHHHhhcc----cceeEEEEEecCCceEEEE
Confidence 999988654 567888888998886 4555566666666555443
No 20
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.80 E-value=3.7e-18 Score=157.15 Aligned_cols=208 Identities=17% Similarity=0.244 Sum_probs=143.7
Q ss_pred ecCeEE-EeCCCCcccC-chhHHHHHHHHHHhccC------CCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHH
Q psy7093 104 FRDLTL-KMTPPVFIPR-SETEELIDIITDKLESS------NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHA 175 (322)
Q Consensus 104 f~~~~~-~v~~~~~ipr-p~te~lv~~i~~~~~~~------~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~a 175 (322)
+||+.+ .+..+.+.|. |..-.++.++.+.+... .....++||||||+|++...++...++++++|+|+++.+
T Consensus 71 ~ygl~~wdip~~~LcPpiP~R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~A 150 (321)
T PRK11727 71 FYGVAHWDIPAGYLCPPIPGRADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQA 150 (321)
T ss_pred hcCCCcccCCCCCcCCCCCcHHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHH
Confidence 467775 5777888754 66777777777765431 113478999999999999999988889999999999999
Q ss_pred HHHHHHHHHHc-CCCCcEEEEE-ccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCC--hhh---hcccc-c--
Q psy7093 176 CDLTEQNAVMH-NVANQLQVFH-AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLE--PEI---ALYED-I-- 245 (322)
Q Consensus 176 l~~A~~n~~~~-~l~~~i~~~~-~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~--~~v---~~~ep-~-- 245 (322)
++.|++|+..+ ++.++++++. .|..+ -+..+. ...++||+|+|||||+...+..... ... ..+.+ .
T Consensus 151 l~~A~~Nv~~Np~l~~~I~~~~~~~~~~--i~~~i~--~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~ 226 (321)
T PRK11727 151 LASAQAIISANPGLNGAIRLRLQKDSKA--IFKGII--HKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKV 226 (321)
T ss_pred HHHHHHHHHhccCCcCcEEEEEccchhh--hhhccc--ccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccc
Confidence 99999999999 7988898865 33200 022111 1356899999999999877643211 111 11111 1
Q ss_pred -------ccc--cCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-CCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeE
Q psy7093 246 -------KAL--DGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-DHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRF 315 (322)
Q Consensus 246 -------~al--~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~ 315 (322)
..| .||+ +.|+.++++++..+++..|++..-++. ...+.+.+.+++.|.. .+..+++.+ -...-|+
T Consensus 227 l~f~g~~~EL~~~GGe--~~fi~~mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~-~~~~~e~~q-G~~~~~~ 302 (321)
T PRK11727 227 LNFGGQQAELWCEGGE--VAFIKRMIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAV-EVKTIEMAQ-GQKQSRF 302 (321)
T ss_pred cCCcchhhheeeCCcE--eeeehHhhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCc-eEEEEEEeC-CCeeeEE
Confidence 111 2444 578999999999999999998777774 5678889999888741 233333333 3445566
Q ss_pred EEEE
Q psy7093 316 VELK 319 (322)
Q Consensus 316 ~~~~ 319 (322)
|.|.
T Consensus 303 vaWs 306 (321)
T PRK11727 303 IAWT 306 (321)
T ss_pred EEee
Confidence 6654
No 21
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.80 E-value=2.1e-19 Score=142.34 Aligned_cols=115 Identities=23% Similarity=0.385 Sum_probs=92.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.+++.+++.. ..+++|+|+++.+++.|+.|+...++.++++++++|+ .+.. ..+..++||+|
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~-----~~~~-~~~~~~~~D~I 74 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDA-----RDLP-EPLPDGKFDLI 74 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHH-----HHHH-HTCTTT-EEEE
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECch-----hhch-hhccCceeEEE
Confidence 589999999999999999996 6899999999999999999999999888899999998 4332 22356899999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
++||||.......... -+.+..+++.+.++|+|||.+++.++
T Consensus 75 v~npP~~~~~~~~~~~------------------~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 75 VTNPPYGPRSGDKAAL------------------RRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp EE--STTSBTT----G------------------GCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCCccccccchhh------------------HHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 9999998653321111 11477999999999999999998765
No 22
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.79 E-value=4e-18 Score=147.41 Aligned_cols=152 Identities=15% Similarity=0.242 Sum_probs=115.7
Q ss_pred CCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeC
Q psy7093 92 RMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171 (322)
Q Consensus 92 ~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDi 171 (322)
|.+.-||+|.. |+|+.+.+.++.-+ ||.++.+.+.+++.+.... .+.+|||+|||||.+++.++... ..+|+++|+
T Consensus 9 ~~~~mrIi~g~-~~g~~l~~~~~~~~-Rp~~d~v~e~l~~~l~~~~-~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~ 84 (199)
T PRK10909 9 GSGQIRIIGGQ-WRGRKLPVPDSPGL-RPTTDRVRETLFNWLAPVI-VDARCLDCFAGSGALGLEALSRY-AAGATLLEM 84 (199)
T ss_pred CCCCEEEEeec-cCCCEeCCCCCCCc-CcCCHHHHHHHHHHHhhhc-CCCEEEEcCCCccHHHHHHHHcC-CCEEEEEEC
Confidence 55545777766 89999998765433 9999999999888775321 23799999999999999765553 579999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCC
Q psy7093 172 SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGG 251 (322)
Q Consensus 172 s~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g 251 (322)
++.+++.|++|++.+++. +++++++|+ .+.++. ...+||+|++||||...-
T Consensus 85 ~~~a~~~a~~Nl~~~~~~-~v~~~~~D~-----~~~l~~--~~~~fDlV~~DPPy~~g~--------------------- 135 (199)
T PRK10909 85 DRAVAQQLIKNLATLKAG-NARVVNTNA-----LSFLAQ--PGTPHNVVFVDPPFRKGL--------------------- 135 (199)
T ss_pred CHHHHHHHHHHHHHhCCC-cEEEEEchH-----HHHHhh--cCCCceEEEECCCCCCCh---------------------
Confidence 999999999999999875 599999998 554421 234699999999996421
Q ss_pred CChhHHHHHHHHHH--hccCccCcEEEEEEcCC
Q psy7093 252 HDGLNIIKPICVFG--SNYLKPNGSIFLETNHD 282 (322)
Q Consensus 252 ~~gl~~~~~~l~~~--~~~Lk~gG~l~~e~~~~ 282 (322)
+..++... ..+|+|+|++++|+...
T Consensus 136 ------~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 136 ------LEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred ------HHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 22333333 34689999999998764
No 23
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.79 E-value=8.6e-18 Score=162.94 Aligned_cols=184 Identities=16% Similarity=0.252 Sum_probs=136.3
Q ss_pred CCCHHHHHHHHHHHHHHH-------cCCCceeEecc--------eeecCeEEEeCCCCcc--cCchhHHHHHHHHHHhcc
Q psy7093 73 ELTNDQITHLNKLCECRL-------ARMPVQYIIKE--------WNFRDLTLKMTPPVFI--PRSETEELIDIITDKLES 135 (322)
Q Consensus 73 ~l~~~~~~~~~~~~~rr~-------~~~p~~yi~g~--------~~f~~~~~~v~~~~~i--prp~te~lv~~i~~~~~~ 135 (322)
.++..+.+.+.++.+++. +++|.+|+.|. .+|+|.+|.+.++.|+ ++..++.+++.+++.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~ 295 (443)
T PRK13168 216 PLSEADRAKLRAFAEQHGLQLYLQPKGPDLVHLLGPADAQLSYYLPEFGLRLAFSPRDFIQVNAQVNQKMVARALEWLDP 295 (443)
T ss_pred CCChHHHHHHHHHhhcccEEEEEECCCCcceeecccccCCcceEEEcCCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcC
Confidence 444455566656555442 47899999886 2588999999999997 456688999999988764
Q ss_pred CCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc-CcCC
Q psy7093 136 SNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP-DLLE 214 (322)
Q Consensus 136 ~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~-~~~~ 214 (322)
.. +.+|||+|||+|.+++.+++. ..+|+|+|+|+.|++.|++|++.+++. +++++++|+ .+.+.. .+..
T Consensus 296 ~~--~~~VLDlgcGtG~~sl~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~~~~~d~-----~~~l~~~~~~~ 365 (443)
T PRK13168 296 QP--GDRVLDLFCGLGNFTLPLARQ--AAEVVGVEGVEAMVERARENARRNGLD-NVTFYHANL-----EEDFTDQPWAL 365 (443)
T ss_pred CC--CCEEEEEeccCCHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEeCh-----HHhhhhhhhhc
Confidence 42 379999999999999999988 479999999999999999999998876 499999998 443321 1224
Q ss_pred CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHc
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGIC 294 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~ 294 (322)
++||+|++||||.... .+++...+ ++|++++++.+++.....--..|.+.
T Consensus 366 ~~fD~Vi~dPPr~g~~-----------------------------~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~~ 415 (443)
T PRK13168 366 GGFDKVLLDPPRAGAA-----------------------------EVMQALAK-LGPKRIVYVSCNPATLARDAGVLVEA 415 (443)
T ss_pred CCCCEEEECcCCcChH-----------------------------HHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhhC
Confidence 5799999999996421 23333333 68999999999875544333444455
Q ss_pred CC
Q psy7093 295 GH 296 (322)
Q Consensus 295 ~~ 296 (322)
|+
T Consensus 416 gY 417 (443)
T PRK13168 416 GY 417 (443)
T ss_pred Cc
Confidence 53
No 24
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.78 E-value=1.8e-17 Score=154.83 Aligned_cols=137 Identities=22% Similarity=0.442 Sum_probs=107.1
Q ss_pred CeEEEeCCCCcccC---chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFIPR---SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 106 ~~~~~v~~~~~ipr---p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
++.+...|++|.+. +.|+.+++ .+.... ..+|||+|||+|.+++.+++..|..+|+++|+|+.|++.|++|
T Consensus 166 ~l~i~~~pgvFs~~~lD~gt~lLl~----~l~~~~--~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~n 239 (342)
T PRK09489 166 GLTVKTLPGVFSRDGLDVGSQLLLS----TLTPHT--KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRAT 239 (342)
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHH----hccccC--CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 67888899999842 23444444 333321 2689999999999999999998889999999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
++.+++. .+++.+|+ +.. ..++||+|||||||+.... ...+..+.++
T Consensus 240 l~~n~l~--~~~~~~D~-----~~~-----~~~~fDlIvsNPPFH~g~~---------------------~~~~~~~~~i 286 (342)
T PRK09489 240 LAANGLE--GEVFASNV-----FSD-----IKGRFDMIISNPPFHDGIQ---------------------TSLDAAQTLI 286 (342)
T ss_pred HHHcCCC--CEEEEccc-----ccc-----cCCCccEEEECCCccCCcc---------------------ccHHHHHHHH
Confidence 9998875 56778887 432 2468999999999985322 1234567999
Q ss_pred HHHhccCccCcEEEEEEcC
Q psy7093 263 VFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e~~~ 281 (322)
..+.++|+|||.+++....
T Consensus 287 ~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 287 RGAVRHLNSGGELRIVANA 305 (342)
T ss_pred HHHHHhcCcCCEEEEEEeC
Confidence 9999999999999986643
No 25
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.77 E-value=8e-18 Score=164.81 Aligned_cols=159 Identities=17% Similarity=0.269 Sum_probs=126.9
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHcCCCcee----EecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeE
Q psy7093 68 VEKNTELTNDQITHLNKLCECRLARMPVQY----IIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRM 143 (322)
Q Consensus 68 ~~~~~~l~~~~~~~~~~~~~rr~~~~p~~y----i~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~i 143 (322)
.+...+++.++.+.+..++++ ++| |+|+..|+|..|.+.+++. +|+.+++.+. + . ++.+|
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~------~~y~~~~i~~~~~f~g~~~~v~~~v~----~te~l~~~~~--~--~--~~~~v 270 (475)
T PLN02336 207 CWLWQKVSSTNDKGFQRFLDN------VQYKSSGILRYERVFGEGFVSTGGLE----TTKEFVDKLD--L--K--PGQKV 270 (475)
T ss_pred EEEEEeecCCcchhHHHHhhh------hccccccHHHHHHHhCCCCCCCchHH----HHHHHHHhcC--C--C--CCCEE
Confidence 466678888888899998888 899 9999999999999999987 6777776653 2 2 23799
Q ss_pred EEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEc
Q psy7093 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223 (322)
Q Consensus 144 LDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~N 223 (322)
||+|||+|+++..+++.+ +.+|+|+|+|+.+++.|++|.. +...++++.++|+ ... + ++.++||+|+|+
T Consensus 271 LDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~-----~~~-~--~~~~~fD~I~s~ 339 (475)
T PLN02336 271 LDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADC-----TKK-T--YPDNSFDVIYSR 339 (475)
T ss_pred EEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCc-----ccC-C--CCCCCEEEEEEC
Confidence 999999999999999875 6799999999999999999875 3345699999998 332 1 245689999996
Q ss_pred CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 224 PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 224 PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
-.+....+ ...+++.+.++|+|||.+++..
T Consensus 340 ~~l~h~~d--------------------------~~~~l~~~~r~LkpgG~l~i~~ 369 (475)
T PLN02336 340 DTILHIQD--------------------------KPALFRSFFKWLKPGGKVLISD 369 (475)
T ss_pred CcccccCC--------------------------HHHHHHHHHHHcCCCeEEEEEE
Confidence 54433221 3478999999999999998863
No 26
>PHA03411 putative methyltransferase; Provisional
Probab=99.73 E-value=7.7e-17 Score=144.10 Aligned_cols=133 Identities=16% Similarity=0.291 Sum_probs=106.9
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.+++.++...+..+|+++|+|+.+++.|++|. .+++++++|+ .+.. ...+||+|
T Consensus 66 grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~-----~e~~----~~~kFDlI 130 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDV-----FEFE----SNEKFDVV 130 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECch-----hhhc----ccCCCcEE
Confidence 6899999999999999988876789999999999999999874 2488999998 4332 24689999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHH--HHHHHHHhccCccCcEEEEEEcC-------CCHHHHHHHH
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII--KPICVFGSNYLKPNGSIFLETNH-------DHLDKIKEWL 291 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~--~~~l~~~~~~Lk~gG~l~~e~~~-------~~~~~~~~~l 291 (322)
|+||||...... ..+...+..||+.|.+.+ .+++.....+|+|+|.+++.... -.+.+.++++
T Consensus 131 IsNPPF~~l~~~--------d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l 202 (279)
T PHA03411 131 ISNPPFGKINTT--------DTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWS 202 (279)
T ss_pred EEcCCccccCch--------hhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHH
Confidence 999999874421 123336777899999884 89999999999999987775432 3378889999
Q ss_pred HHcCC
Q psy7093 292 GICGH 296 (322)
Q Consensus 292 ~~~~~ 296 (322)
+.+|+
T Consensus 203 ~~~g~ 207 (279)
T PHA03411 203 KQTGL 207 (279)
T ss_pred HhcCc
Confidence 99874
No 27
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.72 E-value=3.2e-16 Score=133.99 Aligned_cols=137 Identities=21% Similarity=0.334 Sum_probs=107.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.+++.++...++.+|+|+|.|+.+++.+++|++.+++.+ ++++++|+ .+ +. ..++||+
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~-----~~-~~---~~~~fD~ 112 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRA-----ED-FQ---HEEQFDV 112 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecch-----hh-cc---ccCCccE
Confidence 379999999999999999988788899999999999999999999988764 99999998 33 21 3468999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCc
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMK 299 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~ 299 (322)
|++|. +. . +..+++.+.++|+|||.+++.++......+.++.++... +|
T Consensus 113 I~s~~-~~---~--------------------------~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~~e~~~~-~~ 161 (181)
T TIGR00138 113 ITSRA-LA---S--------------------------LNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEAKRKCQV-LG 161 (181)
T ss_pred EEehh-hh---C--------------------------HHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHHHHhhhh-cC
Confidence 99974 11 0 346778889999999999999999998888888876432 35
Q ss_pred eeeEEEecCCCCCCeEEEE
Q psy7093 300 LKLVENYKDFNNKDRFVEL 318 (322)
Q Consensus 300 ~~~v~~~~D~~g~~R~~~~ 318 (322)
|..+++. -..+-+|-++.
T Consensus 162 ~~~~~~~-~~~~~~~~~~~ 179 (181)
T TIGR00138 162 VEPLEVP-PLTGPDRHLVI 179 (181)
T ss_pred ceEeecc-ccCCCceEEEE
Confidence 6666543 34444665543
No 28
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.71 E-value=3e-17 Score=140.25 Aligned_cols=146 Identities=19% Similarity=0.355 Sum_probs=107.8
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
|.|..+...++.-+ ||.+..+.+.+.+.+......+.++||++||||.+++.++++ +..+|+.||.++.++...++|+
T Consensus 8 ~kgr~l~~p~~~~~-RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSR-GA~~v~fVE~~~~a~~~i~~N~ 85 (183)
T PF03602_consen 8 YKGRKLKTPKGDNT-RPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSR-GAKSVVFVEKNRKAIKIIKKNL 85 (183)
T ss_dssp TTT-EEE-TT--TS--SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHT-T-SEEEEEES-HHHHHHHHHHH
T ss_pred cCCCEecCCCCCCc-CCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhc-CCCeEEEEECCHHHHHHHHHHH
Confidence 67899988887666 999999999999998764113489999999999999999888 5679999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcC-cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPD-LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~-~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+..+..+++++++.|+ +..+... ....+||+|+.+|||..... +..++
T Consensus 86 ~~l~~~~~~~v~~~d~-----~~~l~~~~~~~~~fDiIflDPPY~~~~~--------------------------~~~~l 134 (183)
T PF03602_consen 86 EKLGLEDKIRVIKGDA-----FKFLLKLAKKGEKFDIIFLDPPYAKGLY--------------------------YEELL 134 (183)
T ss_dssp HHHT-GGGEEEEESSH-----HHHHHHHHHCTS-EEEEEE--STTSCHH--------------------------HHHHH
T ss_pred HHhCCCcceeeeccCH-----HHHHHhhcccCCCceEEEECCCcccchH--------------------------HHHHH
Confidence 9999888899999997 5544321 13578999999999975320 24555
Q ss_pred HHHh--ccCccCcEEEEEEcCC
Q psy7093 263 VFGS--NYLKPNGSIFLETNHD 282 (322)
Q Consensus 263 ~~~~--~~Lk~gG~l~~e~~~~ 282 (322)
+... .+|+++|++++|+...
T Consensus 135 ~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 135 ELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp HHHHHTTSEEEEEEEEEEEETT
T ss_pred HHHHHCCCCCCCEEEEEEecCC
Confidence 5554 8999999999999765
No 29
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.71 E-value=1.1e-15 Score=131.11 Aligned_cols=139 Identities=22% Similarity=0.323 Sum_probs=111.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.+++.++...|+.+|+++|+|+.+++.|++|++.+++++ ++++++|+ .+ +. ..++||+
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~-----~~-~~---~~~~fDl 115 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRA-----EE-FG---QEEKFDV 115 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccH-----hh-CC---CCCCccE
Confidence 479999999999999999998889999999999999999999999999866 99999998 33 22 2468999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCc
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMK 299 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~ 299 (322)
|++|- + . -+..+++.+.++|+|||.+++..+..+...+.++.+..|+.
T Consensus 116 V~~~~-~---~--------------------------~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~~~~~~~~-- 163 (187)
T PRK00107 116 VTSRA-V---A--------------------------SLSDLVELCLPLLKPGGRFLALKGRDPEEEIAELPKALGGK-- 163 (187)
T ss_pred EEEcc-c---c--------------------------CHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHHHHhcCce--
Confidence 99962 0 0 04578899999999999999999999999999998887751
Q ss_pred eeeE--EEecCCCCCCeEEEEEE
Q psy7093 300 LKLV--ENYKDFNNKDRFVELKL 320 (322)
Q Consensus 300 ~~~v--~~~~D~~g~~R~~~~~~ 320 (322)
...+ -...-+.|-..+++++|
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 164 VEEVIELTLPGLDGERHLVIIRK 186 (187)
T ss_pred EeeeEEEecCCCCCcEEEEEEec
Confidence 2221 22344566666777665
No 30
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.70 E-value=3.2e-16 Score=122.99 Aligned_cols=110 Identities=21% Similarity=0.430 Sum_probs=87.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.+++.+++..++.+|+|+|+|+.+++.|++++...+...+++++++|+ ..... ..++||+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-----~~~~~---~~~~~D~ 73 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-----EFDPD---FLEPFDL 73 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-----HGGTT---TSSCEEE
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-----ccCcc---cCCCCCE
Confidence 479999999999999999997789999999999999999999997778788999999998 12111 2457999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|+++. +.... +. +++..+++++.+.+.|+|||+++++.
T Consensus 74 v~~~~-~~~~~----~~-----------------~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 74 VICSG-FTLHF----LL-----------------PLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp EEECS-GSGGG----CC-----------------HHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEECC-Ccccc----cc-----------------chhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 99975 31100 00 11224688999999999999999864
No 31
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.6e-15 Score=137.21 Aligned_cols=156 Identities=19% Similarity=0.328 Sum_probs=117.5
Q ss_pred CeEEEeCCCCcc---cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFI---PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 106 ~~~~~v~~~~~i---prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
...+.++||.-+ ..|.|..-++++-+.... +.++||+|||||.+++++++. +..+|+|+|++|.|++.|++|
T Consensus 130 ~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~----g~~vlDvGcGSGILaIAa~kL-GA~~v~g~DiDp~AV~aa~eN 204 (300)
T COG2264 130 ELNIELDPGLAFGTGTHPTTSLCLEALEKLLKK----GKTVLDVGCGSGILAIAAAKL-GAKKVVGVDIDPQAVEAAREN 204 (300)
T ss_pred ceEEEEccccccCCCCChhHHHHHHHHHHhhcC----CCEEEEecCChhHHHHHHHHc-CCceEEEecCCHHHHHHHHHH
Confidence 344677777655 467787777777666653 389999999999999998886 567899999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+.++++...++....+. ... ...++||+||+|- -. +.+..+.
T Consensus 205 a~~N~v~~~~~~~~~~~-----~~~----~~~~~~DvIVANI-----------LA------------------~vl~~La 246 (300)
T COG2264 205 ARLNGVELLVQAKGFLL-----LEV----PENGPFDVIVANI-----------LA------------------EVLVELA 246 (300)
T ss_pred HHHcCCchhhhcccccc-----hhh----cccCcccEEEehh-----------hH------------------HHHHHHH
Confidence 99999874233333332 111 1346999999983 11 2366899
Q ss_pred HHHhccCccCcEEEEE-EcCCCHHHHHHHHHHcCCCCceeeEEEecC
Q psy7093 263 VFGSNYLKPNGSIFLE-TNHDHLDKIKEWLGICGHHMKLKLVENYKD 308 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e-~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D 308 (322)
..+.++|+|||++++. +=.+|.+.+.+.+.+.| |.-+.+..+
T Consensus 247 ~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~g----f~v~~~~~~ 289 (300)
T COG2264 247 PDIKRLLKPGGRLILSGILEDQAESVAEAYEQAG----FEVVEVLER 289 (300)
T ss_pred HHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCC----CeEeEEEec
Confidence 9999999999999884 44678888999988876 677776665
No 32
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.69 E-value=8.9e-16 Score=143.38 Aligned_cols=146 Identities=18% Similarity=0.148 Sum_probs=110.8
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
|.+-.+.+...+++..... ++.+|||+|||||.+++.++.. +.+++|+|+++.++..|+.|++.+++.+ +.+.++
T Consensus 163 ~~~l~~~la~~~~~l~~~~--~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~ 237 (329)
T TIGR01177 163 PGSMDPKLARAMVNLARVT--EGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRG 237 (329)
T ss_pred CCCCCHHHHHHHHHHhCCC--CcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEec
Confidence 5555566666666655443 2378999999999999987765 7899999999999999999999999876 889999
Q ss_pred cCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 198 EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 198 D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+ .+ ++ +..++||+|++||||....... +....++|..+++.+.+.|+|||++++
T Consensus 238 D~-----~~-l~--~~~~~~D~Iv~dPPyg~~~~~~-----------------~~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 238 DA-----TK-LP--LSSESVDAIATDPPYGRSTTAA-----------------GDGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred ch-----hc-CC--cccCCCCEEEECCCCcCccccc-----------------CCchHHHHHHHHHHHHHHccCCcEEEE
Confidence 98 32 32 2356899999999997644321 112235688999999999999999998
Q ss_pred EEcCCCHHHHHHHHHHcC
Q psy7093 278 ETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 278 e~~~~~~~~~~~~l~~~~ 295 (322)
.+.... .+.++++..|
T Consensus 293 ~~~~~~--~~~~~~~~~g 308 (329)
T TIGR01177 293 AVPTRI--DLESLAEDAF 308 (329)
T ss_pred EEcCCC--CHHHHHhhcC
Confidence 876543 3455677765
No 33
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.68 E-value=1e-15 Score=131.66 Aligned_cols=144 Identities=14% Similarity=0.195 Sum_probs=109.6
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
|.+..+...++... ||.+..+.+.+...+... ..+.++||+|||||.+++.++++ ...+|+++|.++.+++.+++|+
T Consensus 16 ~kg~~l~~p~~~~~-rpt~~~vrea~f~~l~~~-~~g~~vLDLfaGsG~lglea~sr-ga~~v~~vE~~~~a~~~~~~N~ 92 (189)
T TIGR00095 16 RGGRLLKLPPGGST-RPTTRVVRELFFNILRPE-IQGAHLLDVFAGSGLLGEEALSR-GAKVAFLEEDDRKANQTLKENL 92 (189)
T ss_pred hCCcccCCCCCCCC-CCchHHHHHHHHHHHHHh-cCCCEEEEecCCCcHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHH
Confidence 67888887777665 888888888888877532 12378999999999999999998 3458999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCC-CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLE-QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~-~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+.+++.++++++++|+ ++.+...... ..||+|+.+|||.... +..++
T Consensus 93 ~~~~~~~~~~~~~~D~-----~~~l~~~~~~~~~~dvv~~DPPy~~~~---------------------------~~~~l 140 (189)
T TIGR00095 93 ALLKSGEQAEVVRNSA-----LRALKFLAKKPTFDNVIYLDPPFFNGA---------------------------LQALL 140 (189)
T ss_pred HHhCCcccEEEEehhH-----HHHHHHhhccCCCceEEEECcCCCCCc---------------------------HHHHH
Confidence 9999877899999998 5544221112 2489999999996421 11222
Q ss_pred HHH--hccCccCcEEEEEEcCC
Q psy7093 263 VFG--SNYLKPNGSIFLETNHD 282 (322)
Q Consensus 263 ~~~--~~~Lk~gG~l~~e~~~~ 282 (322)
+.. ..+|+++|++++|+...
T Consensus 141 ~~l~~~~~l~~~~iiv~E~~~~ 162 (189)
T TIGR00095 141 ELCENNWILEDTVLIVVEEDRE 162 (189)
T ss_pred HHHHHCCCCCCCeEEEEEecCC
Confidence 222 35899999999998754
No 34
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.66 E-value=1.6e-15 Score=154.53 Aligned_cols=133 Identities=17% Similarity=0.273 Sum_probs=107.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA-NQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
.+|||+|||||.+++.+++. +..+|+++|+|+.+++.|++|++.+++. ++++++++|+ ++.+.. ..++||+
T Consensus 540 ~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~-----~~~l~~--~~~~fDl 611 (702)
T PRK11783 540 KDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADC-----LAWLKE--AREQFDL 611 (702)
T ss_pred CeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccH-----HHHHHH--cCCCcCE
Confidence 78999999999999999986 4557999999999999999999999986 5899999998 654422 1458999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
||+||||...... +. .+ .++...|..++..+.++|+|||.++++++..+.....+.+.+.|+
T Consensus 612 IilDPP~f~~~~~--~~-~~------------~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~~~~~~~~~g~ 673 (702)
T PRK11783 612 IFIDPPTFSNSKR--ME-DS------------FDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKMDEEGLAKLGL 673 (702)
T ss_pred EEECCCCCCCCCc--cc-hh------------hhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCChhHHHHHhCCC
Confidence 9999999875421 00 00 123455889999999999999999999988877766777877764
No 35
>PHA03412 putative methyltransferase; Provisional
Probab=99.66 E-value=6.7e-16 Score=135.14 Aligned_cols=125 Identities=14% Similarity=0.265 Sum_probs=93.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHF---PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~---~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
.+|||+|||||.+++.++++. +..+|+++|+++.+++.|++|.. ++.++++|+ .... ..++|
T Consensus 51 grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~-----~~~~----~~~~F 115 (241)
T PHA03412 51 GSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADA-----LTTE----FDTLF 115 (241)
T ss_pred CEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcch-----hccc----ccCCc
Confidence 799999999999999999864 35699999999999999998852 378899998 3321 24589
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccc-cCCCChhHHHHHHHHHHhccCccCcEEEEEE----------------c
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKAL-DGGHDGLNIIKPICVFGSNYLKPNGSIFLET----------------N 280 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al-~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~----------------~ 280 (322)
|+||+||||..... +. -+..+|+.+...++..+.+++++|+. ++-. +
T Consensus 116 DlIIsNPPY~~~~~---------------~d~~ar~~g~~~~~~li~~A~~Ll~~G~~-ILP~~~~~~~y~~~~~~~~~~ 179 (241)
T PHA03412 116 DMAISNPPFGKIKT---------------SDFKGKYTGAEFEYKVIERASQIARQGTF-IIPQMSANFRYSGTHYFRQDE 179 (241)
T ss_pred cEEEECCCCCCccc---------------cccCCcccccHHHHHHHHHHHHHcCCCEE-EeCcccccCcccCccceeecc
Confidence 99999999997442 11 13457889999999999996666664 4411 1
Q ss_pred CCCHHHHHHHHHHcCC
Q psy7093 281 HDHLDKIKEWLGICGH 296 (322)
Q Consensus 281 ~~~~~~~~~~l~~~~~ 296 (322)
...+....++.++.|.
T Consensus 180 ~~~~~~~~~~~~~~~~ 195 (241)
T PHA03412 180 STTSSKCKKFLDETGL 195 (241)
T ss_pred CcccHHHHHHHHhcCe
Confidence 1224566677777653
No 36
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.66 E-value=3.4e-15 Score=126.00 Aligned_cols=150 Identities=20% Similarity=0.384 Sum_probs=116.9
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
|.|+.+.+.++.-+ ||.+..+-+.+.+.+......+.++||+++|||.+++..+++ ...+++.||.|..++...++|+
T Consensus 9 ~kgr~L~~p~~~~~-RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSR-GA~~~~~vE~~~~a~~~l~~N~ 86 (187)
T COG0742 9 YKGRKLKTPDGPGT-RPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSR-GAARVVFVEKDRKAVKILKENL 86 (187)
T ss_pred ccCCcccCCCCCCc-CCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhC-CCceEEEEecCHHHHHHHHHHH
Confidence 68899998887555 999999999999998762124589999999999999999998 5779999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
+.+++..+.+++..|+ ...++..-..++||+|+.+|||...- ...+ ...+.-
T Consensus 87 ~~l~~~~~~~~~~~da-----~~~L~~~~~~~~FDlVflDPPy~~~l----~~~~-------------------~~~~~~ 138 (187)
T COG0742 87 KALGLEGEARVLRNDA-----LRALKQLGTREPFDLVFLDPPYAKGL----LDKE-------------------LALLLL 138 (187)
T ss_pred HHhCCccceEEEeecH-----HHHHHhcCCCCcccEEEeCCCCccch----hhHH-------------------HHHHHH
Confidence 9999888899999998 54433211223599999999998211 0000 111222
Q ss_pred HHhccCccCcEEEEEEcCCC
Q psy7093 264 FGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~~ 283 (322)
.-..+|+|+|.+++|++...
T Consensus 139 ~~~~~L~~~~~iv~E~~~~~ 158 (187)
T COG0742 139 EENGWLKPGALIVVEHDKDV 158 (187)
T ss_pred HhcCCcCCCcEEEEEeCCCc
Confidence 24578999999999998764
No 37
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.66 E-value=6.8e-15 Score=126.47 Aligned_cols=132 Identities=24% Similarity=0.371 Sum_probs=103.2
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
+.+...+++.+... ++.+|||+|||+|.+++.+++..|+.+|+++|+|+.+++.|++|+..+++. +++++++|+
T Consensus 17 ~~~r~~~~~~l~~~--~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~-~i~~~~~d~--- 90 (187)
T PRK08287 17 EEVRALALSKLELH--RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCG-NIDIIPGEA--- 90 (187)
T ss_pred HHHHHHHHHhcCCC--CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-CeEEEecCc---
Confidence 44444555665443 237999999999999999999988899999999999999999999988875 599999987
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE-cC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET-NH 281 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~-~~ 281 (322)
...+ .++||+|+++.... .+..+++.+.+.|+|||.++++. ..
T Consensus 91 --~~~~-----~~~~D~v~~~~~~~-----------------------------~~~~~l~~~~~~Lk~gG~lv~~~~~~ 134 (187)
T PRK08287 91 --PIEL-----PGKADAIFIGGSGG-----------------------------NLTAIIDWSLAHLHPGGRLVLTFILL 134 (187)
T ss_pred --hhhc-----CcCCCEEEECCCcc-----------------------------CHHHHHHHHHHhcCCCeEEEEEEecH
Confidence 3222 35799999863210 13468888999999999998864 56
Q ss_pred CCHHHHHHHHHHcCC
Q psy7093 282 DHLDKIKEWLGICGH 296 (322)
Q Consensus 282 ~~~~~~~~~l~~~~~ 296 (322)
.+...+.++++++|+
T Consensus 135 ~~~~~~~~~l~~~g~ 149 (187)
T PRK08287 135 ENLHSALAHLEKCGV 149 (187)
T ss_pred hhHHHHHHHHHHCCC
Confidence 667788889988874
No 38
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.66 E-value=1.6e-15 Score=131.21 Aligned_cols=144 Identities=18% Similarity=0.180 Sum_probs=107.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.++||+|||+|.++..+|..+|+.+|+|+|+++.+++.|++++...++. +++++++|+ .+.....++.+.+|.|
T Consensus 18 ~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~-----~~~~~~~~~~~~~d~v 91 (194)
T TIGR00091 18 PLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDA-----NELLDKFFPDGSLSKV 91 (194)
T ss_pred ceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCH-----HHHHHhhCCCCceeEE
Confidence 6899999999999999999999999999999999999999999988876 599999998 3322111234589999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC-HHHHHHHHHHcCCCCc
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH-LDKIKEWLGICGHHMK 299 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~-~~~~~~~l~~~~~~~~ 299 (322)
++|+|-...... +.+...+ ...+++.+.++|||||.+++.+.... ...+.+.+..++ +
T Consensus 92 ~~~~pdpw~k~~---------h~~~r~~---------~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~~---~ 150 (194)
T TIGR00091 92 FLNFPDPWPKKR---------HNKRRIT---------QPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEND---L 150 (194)
T ss_pred EEECCCcCCCCC---------ccccccC---------CHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhCC---C
Confidence 999763322211 1111110 34789999999999999999876553 566667777665 3
Q ss_pred eeeEEEecCCCC
Q psy7093 300 LKLVENYKDFNN 311 (322)
Q Consensus 300 ~~~v~~~~D~~g 311 (322)
|..+....|+.+
T Consensus 151 f~~~~~~~~~~~ 162 (194)
T TIGR00091 151 FENTSKSTDLNN 162 (194)
T ss_pred eEecccccccCC
Confidence 676655555544
No 39
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.65 E-value=2.8e-15 Score=124.48 Aligned_cols=108 Identities=23% Similarity=0.389 Sum_probs=89.0
Q ss_pred CCeEEEEcCchhHHHHHHH-HhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLL-KHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la-~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|.++..++ ...|+.+++|+|+|+.+++.|+++++..++. +++|.++|+ .+ ++..+. ++||
T Consensus 4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~-----~~-l~~~~~-~~~D 75 (152)
T PF13847_consen 4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDI-----ED-LPQELE-EKFD 75 (152)
T ss_dssp TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBT-----TC-GCGCSS-TTEE
T ss_pred CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeeh-----hc-cccccC-CCee
Confidence 3799999999999999999 4567899999999999999999999999987 699999999 44 432222 7899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
+|++++++....+ ...+++.+.++|++||.+++....
T Consensus 76 ~I~~~~~l~~~~~--------------------------~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 76 IIISNGVLHHFPD--------------------------PEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEESTGGGTSH--------------------------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEEEcCchhhccC--------------------------HHHHHHHHHHHcCCCcEEEEEECC
Confidence 9999988744332 347899999999999999886554
No 40
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.64 E-value=7.5e-15 Score=139.28 Aligned_cols=147 Identities=20% Similarity=0.240 Sum_probs=107.5
Q ss_pred ecCeEEEeCCCCcc--cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFI--PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 104 f~~~~~~v~~~~~i--prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.|.+|.++++.|+ ++...+.+.+.+.+.+.... +.+|||+|||+|.+++.++.. +.+|+|+|+++.+++.|++
T Consensus 198 ~~g~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~--~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~ 273 (374)
T TIGR02085 198 FNDVPLVIRPQSFFQTNPKVAAQLYATARQWVREIP--VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQ 273 (374)
T ss_pred ECCEEEEECCCccccCCHHHHHHHHHHHHHHHHhcC--CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHH
Confidence 55778999999997 33444556666666554222 268999999999999999975 5799999999999999999
Q ss_pred HHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 182 n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
|++.+++. +++++++|+ .+.+.. ...+||+|++||||... . ..+
T Consensus 274 N~~~~~~~-~~~~~~~d~-----~~~~~~--~~~~~D~vi~DPPr~G~------~----------------------~~~ 317 (374)
T TIGR02085 274 SAQMLGLD-NLSFAALDS-----AKFATA--QMSAPELVLVNPPRRGI------G----------------------KEL 317 (374)
T ss_pred HHHHcCCC-cEEEEECCH-----HHHHHh--cCCCCCEEEECCCCCCC------c----------------------HHH
Confidence 99999885 699999998 433321 12469999999998411 1 133
Q ss_pred HHHHhccCccCcEEEEEEcCCCHHHHHHHH
Q psy7093 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWL 291 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l 291 (322)
++.+. .++|++++++++++.....--..|
T Consensus 318 l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 318 CDYLS-QMAPKFILYSSCNAQTMAKDIAEL 346 (374)
T ss_pred HHHHH-hcCCCeEEEEEeCHHHHHHHHHHh
Confidence 33333 378999999999876544433344
No 41
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.64 E-value=5.9e-15 Score=142.80 Aligned_cols=166 Identities=20% Similarity=0.272 Sum_probs=120.6
Q ss_pred CCCceeEeccee----ecCeEEEeCCCCccc--CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCE
Q psy7093 92 RMPVQYIIKEWN----FRDLTLKMTPPVFIP--RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLK 165 (322)
Q Consensus 92 ~~p~~yi~g~~~----f~~~~~~v~~~~~ip--rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~ 165 (322)
|++...+.|... +.+..|.++++.|+. +..++.+++.+.+.+.... +.+|||+|||+|.+++.+++. ..+
T Consensus 241 g~~~~~l~G~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~--~~~vLDl~cG~G~~sl~la~~--~~~ 316 (431)
T TIGR00479 241 GEETEQIAGEGPIYEKSGDLSFSLSARDFFQVNSGQNEKLVDRALEALELQG--EELVVDAYCGVGTFTLPLAKQ--AKS 316 (431)
T ss_pred CCceEEEeCCCeEEEEECCEEEEECCCceeecCHHHHHHHHHHHHHHhccCC--CCEEEEcCCCcCHHHHHHHHh--CCE
Confidence 455566666543 347899999999983 4566778888877775432 268999999999999999987 468
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC-cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccc
Q psy7093 166 AIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD-LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYED 244 (322)
Q Consensus 166 v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~-~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep 244 (322)
|+|+|+++.+++.|++|+..+++. +++++++|+ .+.++.. ....+||+|+.|||+....
T Consensus 317 V~~vE~~~~av~~a~~n~~~~~~~-nv~~~~~d~-----~~~l~~~~~~~~~~D~vi~dPPr~G~~-------------- 376 (431)
T TIGR00479 317 VVGIEVVPESVEKAQQNAELNGIA-NVEFLAGTL-----ETVLPKQPWAGQIPDVLLLDPPRKGCA-------------- 376 (431)
T ss_pred EEEEEcCHHHHHHHHHHHHHhCCC-ceEEEeCCH-----HHHHHHHHhcCCCCCEEEECcCCCCCC--------------
Confidence 999999999999999999998875 599999998 4332211 1235799999999974211
Q ss_pred cccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 245 IKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 245 ~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
..+++.+. .++|++++++.+.+.....-.+.+.+.|+
T Consensus 377 --------------~~~l~~l~-~l~~~~ivyvsc~p~tlard~~~l~~~gy 413 (431)
T TIGR00479 377 --------------AEVLRTII-ELKPERIVYVSCNPATLARDLEFLCKEGY 413 (431)
T ss_pred --------------HHHHHHHH-hcCCCEEEEEcCCHHHHHHHHHHHHHCCe
Confidence 13444433 37899988887776555555555666553
No 42
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.64 E-value=9.8e-15 Score=133.15 Aligned_cols=161 Identities=24% Similarity=0.385 Sum_probs=116.1
Q ss_pred eEEEeCCCCcc---cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 107 LTLKMTPPVFI---PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 107 ~~~~v~~~~~i---prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
..+.++|+.-+ -.|.|...++.+.+.... +.+|||+|||||.++++.++. +..+|+|+|+++.|++.|++|+
T Consensus 130 ~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~----g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~ 204 (295)
T PF06325_consen 130 IVIEIDPGMAFGTGHHPTTRLCLELLEKYVKP----GKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENA 204 (295)
T ss_dssp EEEEESTTSSS-SSHCHHHHHHHHHHHHHSST----TSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHH
T ss_pred EEEEECCCCcccCCCCHHHHHHHHHHHHhccC----CCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHH
Confidence 45778888665 457777777777666443 279999999999999998886 6678999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
..+++.+++.+. .. ... ..++||+|++|-- . +++..++.
T Consensus 205 ~~N~~~~~~~v~--~~------~~~----~~~~~dlvvANI~-----------~------------------~vL~~l~~ 243 (295)
T PF06325_consen 205 ELNGVEDRIEVS--LS------EDL----VEGKFDLVVANIL-----------A------------------DVLLELAP 243 (295)
T ss_dssp HHTT-TTCEEES--CT------SCT----CCS-EEEEEEES------------H------------------HHHHHHHH
T ss_pred HHcCCCeeEEEE--Ee------ccc----ccccCCEEEECCC-----------H------------------HHHHHHHH
Confidence 999998877663 11 111 3479999999831 1 23567888
Q ss_pred HHhccCccCcEEEEE-EcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 264 FGSNYLKPNGSIFLE-TNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e-~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
...++|+|||++++. +-..+.+.+.+.+++ | |..++... .|....+.++|
T Consensus 244 ~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~-g----~~~~~~~~--~~~W~~l~~~K 294 (295)
T PF06325_consen 244 DIASLLKPGGYLILSGILEEQEDEVIEAYKQ-G----FELVEERE--EGEWVALVFKK 294 (295)
T ss_dssp HCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT-T----EEEEEEEE--ETTEEEEEEEE
T ss_pred HHHHhhCCCCEEEEccccHHHHHHHHHHHHC-C----CEEEEEEE--ECCEEEEEEEe
Confidence 889999999999883 346778888888865 5 56554443 24444444443
No 43
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.63 E-value=2.4e-14 Score=138.26 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=114.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|..++.++...++.+|+++|+++.+++.+++|++++++. ++++++|+ .+. ......++||.
T Consensus 245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~-----~~~-~~~~~~~~fD~ 316 (427)
T PRK10901 245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDA-----RDP-AQWWDGQPFDR 316 (427)
T ss_pred CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCc-----ccc-hhhcccCCCCE
Confidence 47999999999999999999877689999999999999999999998875 78899998 322 11123467999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCCh----hHHHHHHHHHHhccCccCcEEEEEEc----CCCHHHHHHHH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDG----LNIIKPICVFGSNYLKPNGSIFLETN----HDHLDKIKEWL 291 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~g----l~~~~~~l~~~~~~Lk~gG~l~~e~~----~~~~~~~~~~l 291 (322)
|++|||+.....+.. .|...+...... ....+.++..+.++|+|||.+++.++ ......+...+
T Consensus 317 Vl~D~Pcs~~G~~~~--------~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l 388 (427)
T PRK10901 317 ILLDAPCSATGVIRR--------HPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFL 388 (427)
T ss_pred EEECCCCCccccccc--------CccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHH
Confidence 999999986544322 111111111111 13467899999999999999998776 34456677777
Q ss_pred HHcCCCCceee----------EEEecCCCCCCeEEEE
Q psy7093 292 GICGHHMKLKL----------VENYKDFNNKDRFVEL 318 (322)
Q Consensus 292 ~~~~~~~~~~~----------v~~~~D~~g~~R~~~~ 318 (322)
+++.. |.. ..++.+..+.+-|.++
T Consensus 389 ~~~~~---~~~~~~~~~~~~~~~~~P~~~~~dGff~a 422 (427)
T PRK10901 389 ARHPD---AELLDTGTPQQPGRQLLPGEEDGDGFFYA 422 (427)
T ss_pred HhCCC---CEEecCCCCCCCceEECCCCCCCCCeEEE
Confidence 77642 432 2355555566666654
No 44
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.63 E-value=5e-15 Score=130.59 Aligned_cols=110 Identities=20% Similarity=0.300 Sum_probs=92.2
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
++.+|||+|||||-+++.+++..+..+|+|+|+|+.||+.|++.+...+..+ ++++++|+ +.+| +++++||
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dA------e~LP--f~D~sFD 121 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDA------ENLP--FPDNSFD 121 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEech------hhCC--CCCCccC
Confidence 3489999999999999999999888999999999999999999999888777 99999998 5565 6789999
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE-EEEEcCCC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI-FLETNHDH 283 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l-~~e~~~~~ 283 (322)
+|.+.--.....+ +.+.++++.|+|||||.+ ++|+....
T Consensus 122 ~vt~~fglrnv~d--------------------------~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 122 AVTISFGLRNVTD--------------------------IDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred EEEeeehhhcCCC--------------------------HHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 9998543333222 568999999999999976 45665543
No 45
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.62 E-value=4.6e-14 Score=125.21 Aligned_cols=153 Identities=16% Similarity=0.182 Sum_probs=113.3
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
+.+++.+... ++.+|||+|||+|.++..+++.. +..+|+|+|+|+.+++.|++++...++. +++++++|+ .
T Consensus 35 ~~~l~~l~~~--~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~-----~ 106 (231)
T TIGR02752 35 KDTMKRMNVQ--AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNA-----M 106 (231)
T ss_pred HHHHHhcCCC--CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEech-----h
Confidence 4445555433 23799999999999999999876 5679999999999999999999877764 699999998 3
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE-cCCC-
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET-NHDH- 283 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~-~~~~- 283 (322)
+ ++ ++.++||+|+++.++....+ +..+++++.++|+|||.+++.. +..+
T Consensus 107 ~-~~--~~~~~fD~V~~~~~l~~~~~--------------------------~~~~l~~~~~~Lk~gG~l~~~~~~~~~~ 157 (231)
T TIGR02752 107 E-LP--FDDNSFDYVTIGFGLRNVPD--------------------------YMQVLREMYRVVKPGGKVVCLETSQPTI 157 (231)
T ss_pred c-CC--CCCCCccEEEEecccccCCC--------------------------HHHHHHHHHHHcCcCeEEEEEECCCCCC
Confidence 3 22 24578999999765433221 3478899999999999987643 2111
Q ss_pred -----------------------------------------HHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 284 -----------------------------------------LDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 284 -----------------------------------------~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
.+.+.+++++.| |..+++..-..|.-.+++++|
T Consensus 158 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG----f~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 158 PGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAG----FKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred hHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC----CCeeEEEEcccceEEEEEEEC
Confidence 145677888775 787877766668887777765
No 46
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.62 E-value=3.4e-15 Score=141.99 Aligned_cols=129 Identities=21% Similarity=0.286 Sum_probs=97.4
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccCCCcccccccCcC-cCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA-NQLQVFHAEIDSKGQVKNLQPD-LLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~-~~~~~fD 218 (322)
.+|||+|||||.++++++.. +..+|+++|+|+.+++.|++|++.+++. ++++++++|+ ++.+... ...++||
T Consensus 222 ~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~-----~~~l~~~~~~~~~fD 295 (396)
T PRK15128 222 KRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDV-----FKLLRTYRDRGEKFD 295 (396)
T ss_pred CeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccH-----HHHHHHHHhcCCCCC
Confidence 78999999999999987764 4569999999999999999999999986 4799999999 6544221 1245899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHHHHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLDKIKEWLG 292 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l~ 292 (322)
+||+||||...... ++. .+..-|..++..+.++|+|||.++...+. -..+...+++.
T Consensus 296 lVilDPP~f~~~k~--------------~l~---~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~ 354 (396)
T PRK15128 296 VIVMDPPKFVENKS--------------QLM---GACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIA 354 (396)
T ss_pred EEEECCCCCCCChH--------------HHH---HHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHH
Confidence 99999999764320 111 22344788999999999999998875443 33444555443
No 47
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.61 E-value=2.9e-14 Score=132.42 Aligned_cols=147 Identities=18% Similarity=0.256 Sum_probs=106.8
Q ss_pred ecCeEEEeCCCCcccC--chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPR--SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 104 f~~~~~~v~~~~~ipr--p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+..|.+.++.|+.. ...+.+.+.+.+++.... +.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++
T Consensus 138 ~~~~~~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~--~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~ 213 (315)
T PRK03522 138 FNGVPLFIRPQSFFQTNPAVAAQLYATARDWVRELP--PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQ 213 (315)
T ss_pred ECCEEEEECCCeeeecCHHHHHHHHHHHHHHHHhcC--CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHH
Confidence 4577899999999743 345667777767665332 378999999999999999986 5799999999999999999
Q ss_pred HHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 182 n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
|++.+++. +++++++|+ .+.... ..++||+|++|||+... .. .+
T Consensus 214 n~~~~~l~-~v~~~~~D~-----~~~~~~--~~~~~D~Vv~dPPr~G~------~~----------------------~~ 257 (315)
T PRK03522 214 SAAELGLT-NVQFQALDS-----TQFATA--QGEVPDLVLVNPPRRGI------GK----------------------EL 257 (315)
T ss_pred HHHHcCCC-ceEEEEcCH-----HHHHHh--cCCCCeEEEECCCCCCc------cH----------------------HH
Confidence 99999984 699999998 332211 23479999999995321 11 22
Q ss_pred HHHHhccCccCcEEEEEEcCCCHHHHHHHH
Q psy7093 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWL 291 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l 291 (322)
++. ...++|++++++.+++.....-.+.+
T Consensus 258 ~~~-l~~~~~~~ivyvsc~p~t~~rd~~~l 286 (315)
T PRK03522 258 CDY-LSQMAPRFILYSSCNAQTMAKDLAHL 286 (315)
T ss_pred HHH-HHHcCCCeEEEEECCcccchhHHhhc
Confidence 222 23367889999988876544333334
No 48
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.61 E-value=1.5e-14 Score=140.39 Aligned_cols=139 Identities=19% Similarity=0.205 Sum_probs=104.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 141 TRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
.+|||+|||+|..++.+++.. +..+|+++|+++.+++.+++|++++++.+ ++++++|+ .... ..+. ++||+
T Consensus 252 ~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~-----~~~~-~~~~-~~fD~ 323 (444)
T PRK14902 252 DTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDA-----RKVH-EKFA-EKFDK 323 (444)
T ss_pred CEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCc-----cccc-chhc-ccCCE
Confidence 789999999999999999986 56799999999999999999999999875 99999998 3321 1122 67999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChh----HHHHHHHHHHhccCccCcEEEEEEcCC----CHHHHHHHH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL----NIIKPICVFGSNYLKPNGSIFLETNHD----HLDKIKEWL 291 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl----~~~~~~l~~~~~~Lk~gG~l~~e~~~~----~~~~~~~~l 291 (322)
|++|||+...+.+. +.|...+.....++ ...+.++..+.++|||||.+++.++.- ....+..++
T Consensus 324 Vl~D~Pcsg~G~~~--------~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l 395 (444)
T PRK14902 324 ILVDAPCSGLGVIR--------RKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFL 395 (444)
T ss_pred EEEcCCCCCCeeec--------cCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHH
Confidence 99999987544332 23333333333332 235689999999999999999876543 244566677
Q ss_pred HHcC
Q psy7093 292 GICG 295 (322)
Q Consensus 292 ~~~~ 295 (322)
++++
T Consensus 396 ~~~~ 399 (444)
T PRK14902 396 EEHP 399 (444)
T ss_pred HhCC
Confidence 7654
No 49
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.60 E-value=8e-15 Score=127.64 Aligned_cols=132 Identities=18% Similarity=0.206 Sum_probs=98.9
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..+++..|..+|+|+|+|+.+++.|++|+...++. ++.++++|+ .+.++..+..+.||+|
T Consensus 42 ~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~-~v~~~~~d~-----~~~l~~~~~~~~~D~V 115 (202)
T PRK00121 42 PIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLT-NLRLLCGDA-----VEVLLDMFPDGSLDRI 115 (202)
T ss_pred CeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCC-CEEEEecCH-----HHHHHHHcCccccceE
Confidence 7899999999999999999888889999999999999999999888774 599999997 3433322345789999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-CCHHHHHHHHHHcCC
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-DHLDKIKEWLGICGH 296 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-~~~~~~~~~l~~~~~ 296 (322)
++|.|.......+.. ....+..+++.+.++|+|||.+++.+.. .....+.+.+++.|+
T Consensus 116 ~~~~~~p~~~~~~~~------------------~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~g~ 174 (202)
T PRK00121 116 YLNFPDPWPKKRHHK------------------RRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVLSAEGG 174 (202)
T ss_pred EEECCCCCCCccccc------------------cccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHhCcc
Confidence 998653211110000 0001357899999999999999986643 445667777777764
No 50
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.60 E-value=8.2e-14 Score=125.25 Aligned_cols=147 Identities=20% Similarity=0.316 Sum_probs=104.7
Q ss_pred eEEEeCCCCcc---cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 107 LTLKMTPPVFI---PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 107 ~~~~v~~~~~i---prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
..+.++|+.-+ ..+.|...++.+..... ++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|+
T Consensus 88 ~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~----~~~~VLDiGcGsG~l~i~~~~~-g~~~v~giDis~~~l~~A~~n~ 162 (250)
T PRK00517 88 INIELDPGMAFGTGTHPTTRLCLEALEKLVL----PGKTVLDVGCGSGILAIAAAKL-GAKKVLAVDIDPQAVEAARENA 162 (250)
T ss_pred EEEEECCCCccCCCCCHHHHHHHHHHHhhcC----CCCEEEEeCCcHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHH
Confidence 34566666444 24556665555554432 2379999999999999987765 4457999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
..+++..++.+..+| .+||+|++|... +.+..+++
T Consensus 163 ~~~~~~~~~~~~~~~----------------~~fD~Vvani~~-----------------------------~~~~~l~~ 197 (250)
T PRK00517 163 ELNGVELNVYLPQGD----------------LKADVIVANILA-----------------------------NPLLELAP 197 (250)
T ss_pred HHcCCCceEEEccCC----------------CCcCEEEEcCcH-----------------------------HHHHHHHH
Confidence 988864434332221 269999998421 12457889
Q ss_pred HHhccCccCcEEEEE-EcCCCHHHHHHHHHHcCCCCceeeEEEec
Q psy7093 264 FGSNYLKPNGSIFLE-TNHDHLDKIKEWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e-~~~~~~~~~~~~l~~~~~~~~~~~v~~~~ 307 (322)
.+.++|+|||.+++. +...+.+.+.+.+.++| |..+.+..
T Consensus 198 ~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~G----f~~~~~~~ 238 (250)
T PRK00517 198 DLARLLKPGGRLILSGILEEQADEVLEAYEEAG----FTLDEVLE 238 (250)
T ss_pred HHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCC----CEEEEEEE
Confidence 999999999999885 34566778888888876 56555544
No 51
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.60 E-value=6.3e-14 Score=130.30 Aligned_cols=168 Identities=20% Similarity=0.209 Sum_probs=118.4
Q ss_pred eeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHH
Q psy7093 96 QYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHA 175 (322)
Q Consensus 96 ~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~a 175 (322)
|+.....+|++.--.+...++.|++.++.+.+.+++...... ++.+|||+|||+|.++..+++..+..+|+++|+|+.+
T Consensus 71 ~h~~~~~~~y~~lA~~YD~~~~~~~~~e~~r~~~l~~~~l~~-~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~m 149 (340)
T PLN02490 71 QHKKEAFWFYRFLSIVYDHIINPGHWTEDMRDDALEPADLSD-RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQ 149 (340)
T ss_pred hhhhcceeEccceeeecCCCeecCcchHHHHHHHHhhcccCC-CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHH
Confidence 333333344444333444455577778888887776554321 2379999999999999999998878899999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChh
Q psy7093 176 CDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL 255 (322)
Q Consensus 176 l~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl 255 (322)
++.|+++... .+++++.+|+ . .++ +..+.||+|+++..+....+
T Consensus 150 L~~A~~k~~~----~~i~~i~gD~-----e-~lp--~~~~sFDvVIs~~~L~~~~d------------------------ 193 (340)
T PLN02490 150 LAKAKQKEPL----KECKIIEGDA-----E-DLP--FPTDYADRYVSAGSIEYWPD------------------------ 193 (340)
T ss_pred HHHHHHhhhc----cCCeEEeccH-----H-hCC--CCCCceeEEEEcChhhhCCC------------------------
Confidence 9999987642 3478899998 2 222 24578999999765543221
Q ss_pred HHHHHHHHHHhccCccCcEEEEEE-c----------------CCCHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 256 NIIKPICVFGSNYLKPNGSIFLET-N----------------HDHLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 256 ~~~~~~l~~~~~~Lk~gG~l~~e~-~----------------~~~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
...+++++.++|+|||.+++.. . ..+.+++.+++++.| |..+++.
T Consensus 194 --~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl~~lL~~aG----F~~V~i~ 255 (340)
T PLN02490 194 --PQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEYIEWFTKAG----FKDVKLK 255 (340)
T ss_pred --HHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHHHHHHHHCC----CeEEEEE
Confidence 2368999999999999987632 1 124577788888876 6777654
No 52
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.60 E-value=4.9e-14 Score=129.23 Aligned_cols=145 Identities=23% Similarity=0.309 Sum_probs=106.7
Q ss_pred CeEEEeCCCCcc---cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFI---PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 106 ~~~~~v~~~~~i---prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
...+.++|+..+ ..|.|....+.+..... ++.+|||+|||+|.+++.+++. +..+|+|+|+|+.+++.|++|
T Consensus 127 ~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~----~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n 201 (288)
T TIGR00406 127 ALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDL----KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKN 201 (288)
T ss_pred cEEEEECCCCcccCCCCHHHHHHHHHHHhhcC----CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHH
Confidence 355777787665 23555444444333222 2379999999999999988765 567999999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+..+++.+++.+...+. ... ..++||+|++|... +.+..++
T Consensus 202 ~~~n~~~~~~~~~~~~~-----~~~-----~~~~fDlVvan~~~-----------------------------~~l~~ll 242 (288)
T TIGR00406 202 AELNQVSDRLQVKLIYL-----EQP-----IEGKADVIVANILA-----------------------------EVIKELY 242 (288)
T ss_pred HHHcCCCcceEEEeccc-----ccc-----cCCCceEEEEecCH-----------------------------HHHHHHH
Confidence 99998877777777665 211 34689999998531 1245788
Q ss_pred HHHhccCccCcEEEE-EEcCCCHHHHHHHHHHc
Q psy7093 263 VFGSNYLKPNGSIFL-ETNHDHLDKIKEWLGIC 294 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~-e~~~~~~~~~~~~l~~~ 294 (322)
..+.++|+|||++++ .+...+...+.+.+++.
T Consensus 243 ~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~ 275 (288)
T TIGR00406 243 PQFSRLVKPGGWLILSGILETQAQSVCDAYEQG 275 (288)
T ss_pred HHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc
Confidence 999999999999988 35566777777777653
No 53
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.59 E-value=2.2e-13 Score=123.22 Aligned_cols=105 Identities=13% Similarity=0.193 Sum_probs=80.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVM--HNVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~--~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+|||+|||+|.++..+++.. +..+|+|+|+|+++++.|+++... .+...+++++++|+ ..++ +++++
T Consensus 74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~------~~lp--~~~~s 145 (261)
T PLN02233 74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDA------TDLP--FDDCY 145 (261)
T ss_pred CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccc------ccCC--CCCCC
Confidence 3799999999999999998875 457999999999999999877542 22234699999998 3333 35678
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
||+|+++--++...+ ...+++++.++|||||.+++.
T Consensus 146 fD~V~~~~~l~~~~d--------------------------~~~~l~ei~rvLkpGG~l~i~ 181 (261)
T PLN02233 146 FDAITMGYGLRNVVD--------------------------RLKAMQEMYRVLKPGSRVSIL 181 (261)
T ss_pred EeEEEEecccccCCC--------------------------HHHHHHHHHHHcCcCcEEEEE
Confidence 999999754433221 347899999999999998663
No 54
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.58 E-value=8.2e-14 Score=110.88 Aligned_cols=118 Identities=24% Similarity=0.312 Sum_probs=91.0
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+...+++.+.... +.+|||+|||+|.++..+++..|..+|+++|+|+.+++.+++|++.+++. +++++.+|+
T Consensus 5 ~~~~~~~~~~~~~~~--~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~--- 78 (124)
T TIGR02469 5 REVRALTLSKLRLRP--GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDA--- 78 (124)
T ss_pred HHHHHHHHHHcCCCC--CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccc---
Confidence 344455666554332 36999999999999999999988899999999999999999999988765 589999987
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
...+.. ..++||.|++..+. ..+..+++.+.+.|+|||.+++..
T Consensus 79 --~~~~~~--~~~~~D~v~~~~~~-----------------------------~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 79 --PEALED--SLPEPDRVFIGGSG-----------------------------GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred --cccChh--hcCCCCEEEECCcc-----------------------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 322211 23589999985321 014578999999999999999864
No 55
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=99.58 E-value=2.9e-14 Score=121.67 Aligned_cols=147 Identities=20% Similarity=0.253 Sum_probs=101.5
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCE---------EEEEeCCHHHHHHHHHHHHHcC
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLK---------AIAIDQSKHACDLTEQNAVMHN 187 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~---------v~~vDis~~al~~A~~n~~~~~ 187 (322)
.|.|-.+.+...++....... +..++|.+||||.+.+..+....+.. ++|+|+++.+++.|+.|++..+
T Consensus 8 ~~a~L~~~lA~~ll~la~~~~--~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag 85 (179)
T PF01170_consen 8 GPAPLRPTLAAALLNLAGWRP--GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAG 85 (179)
T ss_dssp SSTSS-HHHHHHHHHHTT--T--TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHhCCCC--CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcc
Confidence 356666778888877766543 37899999999999999887755555 8999999999999999999999
Q ss_pred CCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhc
Q psy7093 188 VANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSN 267 (322)
Q Consensus 188 l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~ 267 (322)
+...+.+.+.|+ ..++ +..+.+|.||+||||...... ..+.-.+|+.+++.+.+
T Consensus 86 ~~~~i~~~~~D~------~~l~--~~~~~~d~IvtnPPyG~r~~~------------------~~~~~~ly~~~~~~~~~ 139 (179)
T PF01170_consen 86 VEDYIDFIQWDA------RELP--LPDGSVDAIVTNPPYGRRLGS------------------KKDLEKLYRQFLRELKR 139 (179)
T ss_dssp -CGGEEEEE--G------GGGG--GTTSBSCEEEEE--STTSHCH------------------HHHHHHHHHHHHHHHHC
T ss_pred cCCceEEEecch------hhcc--cccCCCCEEEECcchhhhccC------------------HHHHHHHHHHHHHHHHH
Confidence 988899999998 3333 245689999999999754321 01124679999999999
Q ss_pred cCccCcEEEEEEcCCCHHHHHHHHHHcC
Q psy7093 268 YLKPNGSIFLETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 268 ~Lk~gG~l~~e~~~~~~~~~~~~l~~~~ 295 (322)
.|++ ..+++-.+... +.+.+...+
T Consensus 140 ~l~~-~~v~l~~~~~~---~~~~~~~~~ 163 (179)
T PF01170_consen 140 VLKP-RAVFLTTSNRE---LEKALGLKG 163 (179)
T ss_dssp HSTT-CEEEEEESCCC---HHHHHTSTT
T ss_pred HCCC-CEEEEEECCHH---HHHHhcchh
Confidence 9999 44444454443 344455443
No 56
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.57 E-value=8.7e-14 Score=121.39 Aligned_cols=118 Identities=15% Similarity=0.251 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
..++..+++.+.... +.+|||+|||+|..+..+++..+ ..+|+++|+++.+++.|++|+..+++.++++++.+|.
T Consensus 58 p~~~~~~~~~l~~~~--~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~-- 133 (205)
T PRK13944 58 PHMVAMMCELIEPRP--GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDG-- 133 (205)
T ss_pred HHHHHHHHHhcCCCC--CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCc--
Confidence 345566666665432 37999999999999999998764 5699999999999999999999988877799999998
Q ss_pred cccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
.+.++ ..++||+|+++.+.. .+.+.+.+.|+|||.+++.++.
T Consensus 134 ---~~~~~---~~~~fD~Ii~~~~~~--------------------------------~~~~~l~~~L~~gG~lvi~~~~ 175 (205)
T PRK13944 134 ---KRGLE---KHAPFDAIIVTAAAS--------------------------------TIPSALVRQLKDGGVLVIPVEE 175 (205)
T ss_pred ---ccCCc---cCCCccEEEEccCcc--------------------------------hhhHHHHHhcCcCcEEEEEEcC
Confidence 44332 246899999975421 1223466889999999987765
Q ss_pred C
Q psy7093 282 D 282 (322)
Q Consensus 282 ~ 282 (322)
.
T Consensus 176 ~ 176 (205)
T PRK13944 176 G 176 (205)
T ss_pred C
Confidence 4
No 57
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.57 E-value=2.2e-13 Score=131.60 Aligned_cols=146 Identities=15% Similarity=0.107 Sum_probs=105.0
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|..+..++...+..+|+++|+++.+++.+++|+++.++..++.+..+|. ..... ....++||.
T Consensus 239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~-----~~~~~-~~~~~~fD~ 312 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG-----RGPSQ-WAENEQFDR 312 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc-----ccccc-cccccccCE
Confidence 379999999999999999998877899999999999999999999998764455567776 22110 113467999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC----CHHHHHHHHHHcC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD----HLDKIKEWLGICG 295 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~----~~~~~~~~l~~~~ 295 (322)
|++|||+...+.+...+.-.....|.. -.+-....+.++..+.++|||||.+++.++.- ....+..+++++.
T Consensus 313 VllDaPcSg~G~~~~~p~~~~~~~~~~----~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~ 388 (426)
T TIGR00563 313 ILLDAPCSATGVIRRHPDIKWLRKPRD----IAELAELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHP 388 (426)
T ss_pred EEEcCCCCCCcccccCcchhhcCCHHH----HHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCC
Confidence 999999988776543221111111100 00112335789999999999999999987653 4566777887764
No 58
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.56 E-value=3.8e-13 Score=113.06 Aligned_cols=135 Identities=29% Similarity=0.362 Sum_probs=106.4
Q ss_pred hhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCC
Q psy7093 121 ETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200 (322)
Q Consensus 121 ~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~ 200 (322)
..+++.-..+..+...+ +.+++|+|||||.+++.++...|..+|+++|.++++++..++|+++++++ ++.++.+|+
T Consensus 18 TK~EIRal~ls~L~~~~--g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~-n~~vv~g~A- 93 (187)
T COG2242 18 TKEEIRALTLSKLRPRP--GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVD-NLEVVEGDA- 93 (187)
T ss_pred cHHHHHHHHHHhhCCCC--CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCC-cEEEEeccc-
Confidence 44566666677776654 38999999999999999998889999999999999999999999999965 599999999
Q ss_pred CcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 201 ~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
-+.++. ..+||.|+.. |..+ +..+++.+...|+|||.+++..-
T Consensus 94 ----p~~L~~---~~~~daiFIG---------------------------Gg~~---i~~ile~~~~~l~~ggrlV~nai 136 (187)
T COG2242 94 ----PEALPD---LPSPDAIFIG---------------------------GGGN---IEEILEAAWERLKPGGRLVANAI 136 (187)
T ss_pred ----hHhhcC---CCCCCEEEEC---------------------------CCCC---HHHHHHHHHHHcCcCCeEEEEee
Confidence 444431 2268999873 2222 56899999999999999998654
Q ss_pred C-CCHHHHHHHHHHcCC
Q psy7093 281 H-DHLDKIKEWLGICGH 296 (322)
Q Consensus 281 ~-~~~~~~~~~l~~~~~ 296 (322)
. .......+.+++.|.
T Consensus 137 tlE~~~~a~~~~~~~g~ 153 (187)
T COG2242 137 TLETLAKALEALEQLGG 153 (187)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 3 345556677777763
No 59
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.56 E-value=1.9e-13 Score=118.54 Aligned_cols=136 Identities=24% Similarity=0.315 Sum_probs=101.6
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
+++...++..+... ++.+|||+|||+|.+++.+++.. +..+|+++|+++.+++.|++|++.+++.+++.++.+|.
T Consensus 26 ~~~r~~~l~~l~~~--~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~-- 101 (198)
T PRK00377 26 EEIRALALSKLRLR--KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEA-- 101 (198)
T ss_pred HHHHHHHHHHcCCC--CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEech--
Confidence 44444444555443 33799999999999999998875 45799999999999999999999998666799999998
Q ss_pred cccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN- 280 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~- 280 (322)
.+.++. ..++||.|+++... ..+..+++.+.+.|+|||.++++..
T Consensus 102 ---~~~l~~--~~~~~D~V~~~~~~-----------------------------~~~~~~l~~~~~~LkpgG~lv~~~~~ 147 (198)
T PRK00377 102 ---PEILFT--INEKFDRIFIGGGS-----------------------------EKLKEIISASWEIIKKGGRIVIDAIL 147 (198)
T ss_pred ---hhhHhh--cCCCCCEEEECCCc-----------------------------ccHHHHHHHHHHHcCCCcEEEEEeec
Confidence 332221 23579999996411 1145789999999999999988553
Q ss_pred CCCHHHHHHHHHHcCC
Q psy7093 281 HDHLDKIKEWLGICGH 296 (322)
Q Consensus 281 ~~~~~~~~~~l~~~~~ 296 (322)
..+...+.+.+++.|+
T Consensus 148 ~~~~~~~~~~l~~~g~ 163 (198)
T PRK00377 148 LETVNNALSALENIGF 163 (198)
T ss_pred HHHHHHHHHHHHHcCC
Confidence 3455677778877764
No 60
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.55 E-value=6.1e-14 Score=124.47 Aligned_cols=117 Identities=18% Similarity=0.283 Sum_probs=80.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||||.++..+++.. |..+|+|+|+|+.+++.|++++...+.. +++++++|+ +.++ +++++||
T Consensus 48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da------~~lp--~~d~sfD 118 (233)
T PF01209_consen 48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDA------EDLP--FPDNSFD 118 (233)
T ss_dssp --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BT------TB----S-TT-EE
T ss_pred CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCH------HHhc--CCCCcee
Confidence 3799999999999999999875 4679999999999999999999888765 699999998 4444 4678999
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE-EEEcCCCHHHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF-LETNHDHLDKIKEWL 291 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~-~e~~~~~~~~~~~~l 291 (322)
+|++---+....+ ..+.++++.++|||||.++ +|++......+..+.
T Consensus 119 ~v~~~fglrn~~d--------------------------~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~ 166 (233)
T PF01209_consen 119 AVTCSFGLRNFPD--------------------------RERALREMYRVLKPGGRLVILEFSKPRNPLLRALY 166 (233)
T ss_dssp EEEEES-GGG-SS--------------------------HHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHH
T ss_pred EEEHHhhHHhhCC--------------------------HHHHHHHHHHHcCCCeEEEEeeccCCCCchhhcee
Confidence 9998433222111 4578999999999999864 577655444454443
No 61
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.55 E-value=3.3e-13 Score=131.06 Aligned_cols=138 Identities=11% Similarity=0.130 Sum_probs=103.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|..+..++...+ ..+|+++|+|+.+++.+++|+++.|+. +++++++|+ .... ..++||
T Consensus 251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da-----~~~~----~~~~fD 320 (445)
T PRK14904 251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDA-----RSFS----PEEQPD 320 (445)
T ss_pred CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcc-----cccc----cCCCCC
Confidence 37899999999999999988653 469999999999999999999999986 499999998 3321 345799
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChh----HHHHHHHHHHhccCccCcEEEEEEcCCC----HHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL----NIIKPICVFGSNYLKPNGSIFLETNHDH----LDKIKEW 290 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl----~~~~~~l~~~~~~Lk~gG~l~~e~~~~~----~~~~~~~ 290 (322)
+|++|||+.....+..- |...+.-....+ .....++..+.++|+|||.+++.++.-. ...+..+
T Consensus 321 ~Vl~D~Pcsg~g~~~r~--------p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~ 392 (445)
T PRK14904 321 AILLDAPCTGTGVLGRR--------AELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAF 392 (445)
T ss_pred EEEEcCCCCCcchhhcC--------cchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHH
Confidence 99999999776554321 111111111111 2356799999999999999999887543 4556777
Q ss_pred HHHcC
Q psy7093 291 LGICG 295 (322)
Q Consensus 291 l~~~~ 295 (322)
++.+.
T Consensus 393 l~~~~ 397 (445)
T PRK14904 393 LQRHP 397 (445)
T ss_pred HHhCC
Confidence 87764
No 62
>PLN02244 tocopherol O-methyltransferase
Probab=99.54 E-value=3.8e-13 Score=126.17 Aligned_cols=120 Identities=17% Similarity=0.224 Sum_probs=92.0
Q ss_pred HHHHHHHHHhccC---CCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCC
Q psy7093 124 ELIDIITDKLESS---NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200 (322)
Q Consensus 124 ~lv~~i~~~~~~~---~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~ 200 (322)
.+++.+++.+... ..++.+|||+|||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...++.++++++++|+
T Consensus 100 ~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~- 177 (340)
T PLN02244 100 RMIEESLAWAGVPDDDEKRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADA- 177 (340)
T ss_pred HHHHHHHHhcCCCcccCCCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCc-
Confidence 3455555555321 1234789999999999999999986 6799999999999999999998888877899999998
Q ss_pred CcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 201 ~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
.+ ++ ++.++||+|+++-......+ ...+++++.++|||||.+++.
T Consensus 178 ----~~-~~--~~~~~FD~V~s~~~~~h~~d--------------------------~~~~l~e~~rvLkpGG~lvi~ 222 (340)
T PLN02244 178 ----LN-QP--FEDGQFDLVWSMESGEHMPD--------------------------KRKFVQELARVAAPGGRIIIV 222 (340)
T ss_pred ----cc-CC--CCCCCccEEEECCchhccCC--------------------------HHHHHHHHHHHcCCCcEEEEE
Confidence 32 22 35678999999643222111 247889999999999999874
No 63
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.54 E-value=1.4e-13 Score=124.80 Aligned_cols=160 Identities=17% Similarity=0.224 Sum_probs=105.4
Q ss_pred ecCeEEEeCCCCcc---cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFI---PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 104 f~~~~~~v~~~~~i---prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
-.|..|.++....- --.+......++.+... +++|||++|-||.+++.++.. +..+|+.||.|..++++|+
T Consensus 90 E~gl~f~v~l~~gqktGlFlDqR~nR~~v~~~~~-----gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~ 163 (286)
T PF10672_consen 90 ENGLKFRVDLTDGQKTGLFLDQRENRKWVRKYAK-----GKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAK 163 (286)
T ss_dssp ETTEEEEEESSSSSSTSS-GGGHHHHHHHHHHCT-----TCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHH
T ss_pred ECCEEEEEEcCCCCcceEcHHHHhhHHHHHHHcC-----CCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHH
Confidence 35777777642110 01255555555555432 279999999999999998876 4458999999999999999
Q ss_pred HHHHHcCCC-CcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHH
Q psy7093 181 QNAVMHNVA-NQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK 259 (322)
Q Consensus 181 ~n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~ 259 (322)
+|+..++++ +++++++.|+ ++.+......++||+||++||=...... .+ -.-|.
T Consensus 164 ~N~~lNg~~~~~~~~~~~Dv-----f~~l~~~~~~~~fD~IIlDPPsF~k~~~-----~~---------------~~~y~ 218 (286)
T PF10672_consen 164 ENAALNGLDLDRHRFIQGDV-----FKFLKRLKKGGRFDLIILDPPSFAKSKF-----DL---------------ERDYK 218 (286)
T ss_dssp HHHHHTT-CCTCEEEEES-H-----HHHHHHHHHTT-EEEEEE--SSEESSTC-----EH---------------HHHHH
T ss_pred HHHHHcCCCccceEEEecCH-----HHHHHHHhcCCCCCEEEECCCCCCCCHH-----HH---------------HHHHH
Confidence 999999986 6799999999 6655321134689999999995543221 00 12378
Q ss_pred HHHHHHhccCccCcEEEEEEcCCC--HHHHHHHHHHc
Q psy7093 260 PICVFGSNYLKPNGSIFLETNHDH--LDKIKEWLGIC 294 (322)
Q Consensus 260 ~~l~~~~~~Lk~gG~l~~e~~~~~--~~~~~~~l~~~ 294 (322)
.++..+.++|+|||.+++..+... .+.+.+.+.+.
T Consensus 219 ~L~~~a~~ll~~gG~l~~~scs~~i~~~~l~~~~~~~ 255 (286)
T PF10672_consen 219 KLLRRAMKLLKPGGLLLTCSCSHHISPDFLLEAVAEA 255 (286)
T ss_dssp HHHHHHHHTEEEEEEEEEEE--TTS-HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCEEEEEcCCcccCHHHHHHHHHHh
Confidence 999999999999999988665443 34455544443
No 64
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.53 E-value=7.4e-14 Score=122.13 Aligned_cols=142 Identities=14% Similarity=0.209 Sum_probs=93.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|.++..+++..+ ..+|+|+|+++. .... .++++++|+.+......+...+..++||
T Consensus 52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~-~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIV-GVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCC-CcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 36899999999999999998864 469999999981 1223 3899999993211100000112457899
Q ss_pred EEEEcC-CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-CCCHHHHHHHHHHcCC
Q psy7093 219 LVVSNP-PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-HDHLDKIKEWLGICGH 296 (322)
Q Consensus 219 lIv~NP-Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-~~~~~~~~~~l~~~~~ 296 (322)
+|+||+ |+...... .+ +.. -......+++.+.++|+|||.+++.+- ......+...++.
T Consensus 120 ~V~S~~~~~~~g~~~----~d---~~~---------~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~~--- 180 (209)
T PRK11188 120 VVMSDMAPNMSGTPA----VD---IPR---------AMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS--- 180 (209)
T ss_pred EEecCCCCccCCChH----HH---HHH---------HHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHHh---
Confidence 999997 54422110 00 000 011235789999999999999998543 3333444333333
Q ss_pred CCceeeEEEecCCCCCCe
Q psy7093 297 HMKLKLVENYKDFNNKDR 314 (322)
Q Consensus 297 ~~~~~~v~~~~D~~g~~R 314 (322)
.|..+++.||.+++.|
T Consensus 181 --~f~~v~~~Kp~ssr~~ 196 (209)
T PRK11188 181 --LFTKVKVRKPDSSRAR 196 (209)
T ss_pred --CceEEEEECCcccccc
Confidence 3899999999999876
No 65
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.53 E-value=2.6e-13 Score=122.88 Aligned_cols=138 Identities=17% Similarity=0.169 Sum_probs=100.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|..++.++...+ ...|+++|+++.+++.+++|++++++.+ +++++.|. .. +.. ..+.||
T Consensus 72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~-----~~-~~~--~~~~fD 142 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDG-----RV-FGA--AVPKFD 142 (264)
T ss_pred cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCH-----HH-hhh--hccCCC
Confidence 37899999999999999998764 3689999999999999999999999864 99999997 22 211 234699
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChh----HHHHHHHHHHhccCccCcEEEEEEcCCC----HHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL----NIIKPICVFGSNYLKPNGSIFLETNHDH----LDKIKEW 290 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl----~~~~~~l~~~~~~Lk~gG~l~~e~~~~~----~~~~~~~ 290 (322)
.|++|||+.....+.. +|...+.-.++.+ .....+++.+.++|||||++++.++.-. ...+..+
T Consensus 143 ~Vl~D~Pcsg~G~~~~--------~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~ 214 (264)
T TIGR00446 143 AILLDAPCSGEGVIRK--------DPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYL 214 (264)
T ss_pred EEEEcCCCCCCccccc--------ChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHH
Confidence 9999999876544322 2222111111111 2346799999999999999999877544 3345666
Q ss_pred HHHc
Q psy7093 291 LGIC 294 (322)
Q Consensus 291 l~~~ 294 (322)
++++
T Consensus 215 l~~~ 218 (264)
T TIGR00446 215 LEKR 218 (264)
T ss_pred HHhC
Confidence 6665
No 66
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.53 E-value=1.3e-13 Score=123.69 Aligned_cols=104 Identities=21% Similarity=0.248 Sum_probs=84.0
Q ss_pred CeEEEEcCchhHHHHHHHHh--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKH--FPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~--~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.+|||+|||+|..+..+++. .|+.+++|+|+|+.+++.|++++...+..++++++++|+ .+ + +.+.+|
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~-----~~-~----~~~~~D 127 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDI-----RD-I----AIENAS 127 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCCh-----hh-C----CCCCCC
Confidence 78999999999999998884 478999999999999999999998888777899999998 32 2 234589
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+|++|..++... ++ -...+++++.+.|+|||.+++-
T Consensus 128 ~vv~~~~l~~l~------~~------------------~~~~~l~~i~~~LkpGG~l~l~ 163 (247)
T PRK15451 128 MVVLNFTLQFLE------PS------------------ERQALLDKIYQGLNPGGALVLS 163 (247)
T ss_pred EEehhhHHHhCC------HH------------------HHHHHHHHHHHhcCCCCEEEEE
Confidence 999986543221 11 1347899999999999998773
No 67
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.52 E-value=1.5e-13 Score=129.46 Aligned_cols=120 Identities=19% Similarity=0.303 Sum_probs=98.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEEccCCCcccccccCcCcC-CCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA-NQLQVFHAEIDSKGQVKNLQPDLL-EQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~-~~i~~~~~D~~~~~~~~~l~~~~~-~~~fD 218 (322)
++|||++|-||.+++.+|.. +..+|++||+|..++++|++|++.+++. .++.++++|+ ++.+..... ..+||
T Consensus 219 krvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dv-----f~~l~~~~~~g~~fD 292 (393)
T COG1092 219 KRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDV-----FKWLRKAERRGEKFD 292 (393)
T ss_pred CeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhH-----HHHHHHHHhcCCccc
Confidence 89999999999999999987 3449999999999999999999999984 5689999999 877654222 34899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
+||.+||=...+.... .++...|..++..+.++|+|||.+++..+...
T Consensus 293 lIilDPPsF~r~k~~~-----------------~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 293 LIILDPPSFARSKKQE-----------------FSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred EEEECCcccccCcccc-----------------hhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 9999999554433211 13456689999999999999999999877654
No 68
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.52 E-value=2.1e-13 Score=131.53 Aligned_cols=143 Identities=17% Similarity=0.240 Sum_probs=108.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|..++.++... +..+|+++|+|+.+++.+++|+++.++.+ +++.++|+ .. ++. ...++||
T Consensus 238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~Da-----~~-l~~-~~~~~fD 309 (431)
T PRK14903 238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIADA-----ER-LTE-YVQDTFD 309 (431)
T ss_pred CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECch-----hh-hhh-hhhccCC
Confidence 3789999999999999999886 35799999999999999999999999864 89999998 22 211 1246799
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChh-HHHHHHHHHHhccCccCcEEEEEEcCCC----HHHHHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL-NIIKPICVFGSNYLKPNGSIFLETNHDH----LDKIKEWLGI 293 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl-~~~~~~l~~~~~~Lk~gG~l~~e~~~~~----~~~~~~~l~~ 293 (322)
.|++|||+...+.+.. .++++.+.+...+ .++ ...++++..+.++|+|||.+++.++.-+ .+.+..++++
T Consensus 310 ~Vl~DaPCsg~G~~~~-~p~~~~~~~~~~~----~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~ 384 (431)
T PRK14903 310 RILVDAPCTSLGTARN-HPEVLRRVNKEDF----KKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYE 384 (431)
T ss_pred EEEECCCCCCCccccC-ChHHHHhCCHHHH----HHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHh
Confidence 9999999987765432 4454444332211 122 2468899999999999999999987654 4556666666
Q ss_pred cC
Q psy7093 294 CG 295 (322)
Q Consensus 294 ~~ 295 (322)
+.
T Consensus 385 ~~ 386 (431)
T PRK14903 385 QK 386 (431)
T ss_pred CC
Confidence 54
No 69
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.52 E-value=3.7e-13 Score=118.30 Aligned_cols=115 Identities=15% Similarity=0.195 Sum_probs=88.5
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
.++..+++.+... ++.+|||+|||+|.++..+++..+ ..+|+++|+++.+++.|++|+..+++. +++++++|.
T Consensus 64 ~~~~~~~~~l~~~--~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~-~v~~~~~d~--- 137 (215)
T TIGR00080 64 HMVAMMTELLELK--PGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLD-NVIVIVGDG--- 137 (215)
T ss_pred HHHHHHHHHhCCC--CcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCC-CeEEEECCc---
Confidence 4455666666544 337999999999999999998854 467999999999999999999999874 599999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
.+... ...+||+|+++++.. .+...+.+.|+|||++++.++.
T Consensus 138 --~~~~~---~~~~fD~Ii~~~~~~--------------------------------~~~~~~~~~L~~gG~lv~~~~~ 179 (215)
T TIGR00080 138 --TQGWE---PLAPYDRIYVTAAGP--------------------------------KIPEALIDQLKEGGILVMPVGE 179 (215)
T ss_pred --ccCCc---ccCCCCEEEEcCCcc--------------------------------cccHHHHHhcCcCcEEEEEEcC
Confidence 44322 245899999986531 1223456789999999987765
No 70
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.52 E-value=3.7e-13 Score=127.17 Aligned_cols=135 Identities=15% Similarity=0.235 Sum_probs=101.8
Q ss_pred eEEEeCCCCcc--cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 107 LTLKMTPPVFI--PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 107 ~~~~v~~~~~i--prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
..|.+.++.|+ .+..++.+++++.+.+... +.++||+|||+|.+++.+++. ..+|+|+|+++.+++.|++|+.
T Consensus 175 ~~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~---~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~ 249 (362)
T PRK05031 175 FIYRQVENSFTQPNAAVNEKMLEWALDATKGS---KGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIA 249 (362)
T ss_pred EEEEeCCCCeeccCHHHHHHHHHHHHHHhhcC---CCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHH
Confidence 67888888887 3445788888888877532 147999999999999999987 4589999999999999999999
Q ss_pred HcCCCCcEEEEEccCCCcccccccCcCc-------------CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCC
Q psy7093 185 MHNVANQLQVFHAEIDSKGQVKNLQPDL-------------LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGG 251 (322)
Q Consensus 185 ~~~l~~~i~~~~~D~~~~~~~~~l~~~~-------------~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g 251 (322)
.+++. +++++++|+ .+.+.... ...+||+|+.|||+.- +
T Consensus 250 ~~~~~-~v~~~~~d~-----~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR~G------~---------------- 301 (362)
T PRK05031 250 ANGID-NVQIIRMSA-----EEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPRAG------L---------------- 301 (362)
T ss_pred HhCCC-cEEEEECCH-----HHHHHHHhhcccccccccccccCCCCCEEEECCCCCC------C----------------
Confidence 99886 599999998 44332100 0125899999999731 1
Q ss_pred CChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 252 HDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 252 ~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
...+++.+.+ +++++++++++..
T Consensus 302 ------~~~~l~~l~~---~~~ivyvSC~p~t 324 (362)
T PRK05031 302 ------DDETLKLVQA---YERILYISCNPET 324 (362)
T ss_pred ------cHHHHHHHHc---cCCEEEEEeCHHH
Confidence 1234444433 6889999998744
No 71
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.51 E-value=3.1e-13 Score=121.88 Aligned_cols=104 Identities=24% Similarity=0.318 Sum_probs=84.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++.. +.+|+++|+|+.+++.|++++...++.++++++++|+ .+ +.. ...++||+
T Consensus 45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~-----~~-l~~-~~~~~fD~ 115 (255)
T PRK11036 45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAA-----QD-IAQ-HLETPVDL 115 (255)
T ss_pred CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCH-----HH-Hhh-hcCCCCCE
Confidence 379999999999999999987 6899999999999999999999888877899999998 32 211 23568999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
|+++..+....+ ...+++.+.++|||||.+++.
T Consensus 116 V~~~~vl~~~~~--------------------------~~~~l~~~~~~LkpgG~l~i~ 148 (255)
T PRK11036 116 ILFHAVLEWVAD--------------------------PKSVLQTLWSVLRPGGALSLM 148 (255)
T ss_pred EEehhHHHhhCC--------------------------HHHHHHHHHHHcCCCeEEEEE
Confidence 999755432211 236888999999999999764
No 72
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.51 E-value=9.6e-13 Score=127.41 Aligned_cols=162 Identities=14% Similarity=0.133 Sum_probs=114.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+.+|||+|||+|..+..++...+ ..+|+++|+++.+++.+++|++++|+.+ ++++++|+ ... ... ...++
T Consensus 253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~-----~~~-~~~~~~~~~~ 325 (434)
T PRK14901 253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADS-----RNL-LELKPQWRGY 325 (434)
T ss_pred cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCCh-----hhc-cccccccccc
Confidence 37999999999999999998754 4699999999999999999999999875 99999998 222 110 12468
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChh----HHHHHHHHHHhccCccCcEEEEEEcCCC----HHHHH
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL----NIIKPICVFGSNYLKPNGSIFLETNHDH----LDKIK 288 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl----~~~~~~l~~~~~~Lk~gG~l~~e~~~~~----~~~~~ 288 (322)
||.|++|||....+.+...+...... ....+ .....++..+.++|||||.+++.++.-. ...+.
T Consensus 326 fD~Vl~DaPCSg~G~~~r~p~~~~~~--------~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~ 397 (434)
T PRK14901 326 FDRILLDAPCSGLGTLHRHPDARWRQ--------TPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIE 397 (434)
T ss_pred CCEEEEeCCCCcccccccCcchhhhC--------CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHH
Confidence 99999999986544433222111110 00111 1246899999999999999998776433 45577
Q ss_pred HHHHHcCCCCceeeEE----EecCCCCCCeEEEEE
Q psy7093 289 EWLGICGHHMKLKLVE----NYKDFNNKDRFVELK 319 (322)
Q Consensus 289 ~~l~~~~~~~~~~~v~----~~~D~~g~~R~~~~~ 319 (322)
.+++++. +|.... ++.+..|.|-|.+++
T Consensus 398 ~~l~~~~---~~~~~~~~~~~~P~~~~~dGfF~a~ 429 (434)
T PRK14901 398 QFLARHP---DWKLEPPKQKIWPHRQDGDGFFMAV 429 (434)
T ss_pred HHHHhCC---CcEecCCCCccCCCCCCCCcEEEEE
Confidence 7787775 355332 456666777777653
No 73
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.51 E-value=2.2e-13 Score=122.77 Aligned_cols=107 Identities=18% Similarity=0.254 Sum_probs=84.3
Q ss_pred HHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccc
Q psy7093 128 IITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207 (322)
Q Consensus 128 ~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~ 207 (322)
.+++.+... ++.+|||+|||+|.++..++..+|+.+|+|+|+|+.+++.|+++ +++++++|+ .+
T Consensus 20 ~ll~~l~~~--~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~-----~~- 83 (255)
T PRK14103 20 DLLARVGAE--RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDV-----RD- 83 (255)
T ss_pred HHHHhCCCC--CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcCh-----hh-
Confidence 444555433 23799999999999999999998889999999999999999752 377889998 32
Q ss_pred cCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 208 LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 208 l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+. ..++||+|++|..++...+ ...+++++.+.|||||.+++.+
T Consensus 84 ~~---~~~~fD~v~~~~~l~~~~d--------------------------~~~~l~~~~~~LkpgG~l~~~~ 126 (255)
T PRK14103 84 WK---PKPDTDVVVSNAALQWVPE--------------------------HADLLVRWVDELAPGSWIAVQV 126 (255)
T ss_pred CC---CCCCceEEEEehhhhhCCC--------------------------HHHHHHHHHHhCCCCcEEEEEc
Confidence 22 3468999999987654332 2478889999999999999865
No 74
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=99.50 E-value=1.2e-12 Score=118.80 Aligned_cols=208 Identities=17% Similarity=0.218 Sum_probs=105.2
Q ss_pred ecCeEE-EeCCCCcccC-chhHHHHHHHHHHhccCCC---CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHH
Q psy7093 104 FRDLTL-KMTPPVFIPR-SETEELIDIITDKLESSNH---TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDL 178 (322)
Q Consensus 104 f~~~~~-~v~~~~~ipr-p~te~lv~~i~~~~~~~~~---~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~ 178 (322)
++|+.+ .+.++.+.|. |..-.++.++.+.+..... ...++||||||..||--.|+....+++++|+|+++.+++.
T Consensus 62 dfgl~~wdiP~~~LcP~iP~R~nYi~~i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~ 141 (299)
T PF05971_consen 62 DFGLDVWDIPEGRLCPPIPNRLNYIHWIADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLES 141 (299)
T ss_dssp HH--------TTS----HHHHHHHHHHHHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHH
T ss_pred hcCCccccCCCCCcCCCCchhHHHHHHHHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHH
Confidence 467776 7888999876 6666677777777654321 1358999999999996555555458999999999999999
Q ss_pred HHHHHHHc-CCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhh-----c-----cccccc
Q psy7093 179 TEQNAVMH-NVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIA-----L-----YEDIKA 247 (322)
Q Consensus 179 A~~n~~~~-~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~-----~-----~ep~~a 247 (322)
|++|+..+ ++.++|+++...- +..-+..+. .....||+.+|||||+.+.+...-..+.+ . -.|..+
T Consensus 142 A~~nv~~N~~L~~~I~l~~~~~-~~~i~~~i~--~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~ 218 (299)
T PF05971_consen 142 ARENVERNPNLESRIELRKQKN-PDNIFDGII--QPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLN 218 (299)
T ss_dssp HHHHHHHT-T-TTTEEEEE--S-T-SSTTTST--T--S-EEEEEE-----SS----------------------------
T ss_pred HHHHHHhccccccceEEEEcCC-ccccchhhh--cccceeeEEecCCccccChhhhcccccccccccccccccccCcccc
Confidence 99999999 9999999986642 000023222 13458999999999998775332111111 1 134444
Q ss_pred ccCCCC-------hhHHHHHHHHHHhccCccCcEEEEE--Ec-CCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEE
Q psy7093 248 LDGGHD-------GLNIIKPICVFGSNYLKPNGSIFLE--TN-HDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVE 317 (322)
Q Consensus 248 l~~g~~-------gl~~~~~~l~~~~~~Lk~gG~l~~e--~~-~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~ 317 (322)
..|... -+.|..++++++..+-. -+.++. +| ...-..+.+.|++.+. ..+..+++.+- ...-|+|.
T Consensus 219 ~~G~~~El~~~GGEv~FV~rMI~ES~~~~~--~v~WfTsmvgKkssL~~l~~~L~~~~~-~~~~~~e~~QG-~t~rw~lA 294 (299)
T PF05971_consen 219 FTGQSNELWCEGGEVAFVKRMIKESLQLKD--QVRWFTSMVGKKSSLKPLKKELKKLGA-TNYKVTEMCQG-QTKRWILA 294 (299)
T ss_dssp ----TTTTHHHHTHHHHHHHHHHHHHHHGG--GEEEEEEEESSGGGHHHHHHHHHHTT--SEEEEEEEEET-TEEEEEEE
T ss_pred CCCCcceEEcCCccHHHHHHHHHHHHHhCC--CcEEEeecccCcccHHHHHHHHHhcCC-ceEEEEEccCC-ceEEEEEE
Confidence 333211 16788999999886533 345553 44 3456778888888764 23445555543 23344444
Q ss_pred E
Q psy7093 318 L 318 (322)
Q Consensus 318 ~ 318 (322)
|
T Consensus 295 W 295 (299)
T PF05971_consen 295 W 295 (299)
T ss_dssp E
T ss_pred E
Confidence 4
No 75
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.49 E-value=2.5e-13 Score=120.77 Aligned_cols=119 Identities=15% Similarity=0.186 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 121 ETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 121 ~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
++..++..+.+..+. .+|||+|||+|+.+++++...+ +.+|+++|+++++++.|++|++..++.++++++.+|+
T Consensus 55 ~~g~~L~~l~~~~~~-----~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda 129 (234)
T PLN02781 55 DEGLFLSMLVKIMNA-----KNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDA 129 (234)
T ss_pred HHHHHHHHHHHHhCC-----CEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccH
Confidence 455555555554432 7899999999999999998765 6799999999999999999999999988999999999
Q ss_pred CCcccccccCcC---cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 200 DSKGQVKNLQPD---LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 200 ~~~~~~~~l~~~---~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
.+.++.. ...++||+|+.|.+- ..|..+++.+.++|+|||.++
T Consensus 130 -----~~~L~~l~~~~~~~~fD~VfiDa~k-----------------------------~~y~~~~~~~~~ll~~GG~ii 175 (234)
T PLN02781 130 -----LSALDQLLNNDPKPEFDFAFVDADK-----------------------------PNYVHFHEQLLKLVKVGGIIA 175 (234)
T ss_pred -----HHHHHHHHhCCCCCCCCEEEECCCH-----------------------------HHHHHHHHHHHHhcCCCeEEE
Confidence 5543321 124689999997431 125678889999999999988
Q ss_pred EE
Q psy7093 277 LE 278 (322)
Q Consensus 277 ~e 278 (322)
+.
T Consensus 176 ~d 177 (234)
T PLN02781 176 FD 177 (234)
T ss_pred EE
Confidence 74
No 76
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.49 E-value=5.2e-13 Score=115.59 Aligned_cols=101 Identities=15% Similarity=0.189 Sum_probs=79.9
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++. +.+...|+ .. .+ ..++||+|
T Consensus 32 ~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~-----~~-~~---~~~~fD~I 98 (195)
T TIGR00477 32 CKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDI-----NA-AA---LNEDYDFI 98 (195)
T ss_pred CcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccc-----hh-cc---ccCCCCEE
Confidence 79999999999999999986 679999999999999999998877764 77777776 21 11 13579999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+++.+++.... + ....+++.+.++|+|||++++.
T Consensus 99 ~~~~~~~~~~~------~------------------~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 99 FSTVVFMFLQA------G------------------RVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred EEecccccCCH------H------------------HHHHHHHHHHHHhCCCcEEEEE
Confidence 99988754321 1 1357899999999999985553
No 77
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.49 E-value=5.3e-13 Score=120.41 Aligned_cols=112 Identities=19% Similarity=0.244 Sum_probs=86.8
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
+.++..+... ++.+|||+|||+|.++..++..+|+.+|+|+|+|+.+++.|+++. .++.++.+|+ ..
T Consensus 21 ~~ll~~~~~~--~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~-----~~ 87 (258)
T PRK01683 21 RDLLARVPLE--NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADI-----AS 87 (258)
T ss_pred HHHHhhCCCc--CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECch-----hc
Confidence 3444444333 237999999999999999999988899999999999999998764 2478889998 32
Q ss_pred ccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 207 ~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
.. ...+||+|++|..+....+ ...+++.+.+.|+|||.+++.+..
T Consensus 88 ~~----~~~~fD~v~~~~~l~~~~d--------------------------~~~~l~~~~~~LkpgG~~~~~~~~ 132 (258)
T PRK01683 88 WQ----PPQALDLIFANASLQWLPD--------------------------HLELFPRLVSLLAPGGVLAVQMPD 132 (258)
T ss_pred cC----CCCCccEEEEccChhhCCC--------------------------HHHHHHHHHHhcCCCcEEEEECCC
Confidence 21 3458999999987654332 347889999999999999997643
No 78
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.48 E-value=1.7e-12 Score=112.48 Aligned_cols=142 Identities=24% Similarity=0.287 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+...+++.+... ++.+|||+|||+|.+++.+++..++.+|+++|+|+.+++.|++|++.+++. +++++.+|+
T Consensus 26 ~~v~~~l~~~l~~~--~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~-~v~~~~~d~--- 99 (196)
T PRK07402 26 REVRLLLISQLRLE--PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVK-NVEVIEGSA--- 99 (196)
T ss_pred HHHHHHHHHhcCCC--CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-CeEEEECch---
Confidence 33444455665533 237999999999999999998778889999999999999999999988875 599999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
.+.+.. ....+|.++.+.. . -+..+++.+.++|+|||.+++.....
T Consensus 100 --~~~~~~--~~~~~d~v~~~~~----~--------------------------~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 100 --PECLAQ--LAPAPDRVCIEGG----R--------------------------PIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred --HHHHhh--CCCCCCEEEEECC----c--------------------------CHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 332211 1123566555310 0 03578899999999999999987654
Q ss_pred C-HHHHHHHHHHcCCCCceeeEEE
Q psy7093 283 H-LDKIKEWLGICGHHMKLKLVEN 305 (322)
Q Consensus 283 ~-~~~~~~~l~~~~~~~~~~~v~~ 305 (322)
. ...+.+.+++.+. .++..+++
T Consensus 146 ~~~~~~~~~~~~~~~-~~~~~~~~ 168 (196)
T PRK07402 146 EGLYAISEGLAQLQA-RNIEVVQA 168 (196)
T ss_pred HHHHHHHHHHHhcCC-CCceEEEE
Confidence 3 3445566665432 13455554
No 79
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.47 E-value=1.1e-12 Score=123.24 Aligned_cols=127 Identities=19% Similarity=0.163 Sum_probs=99.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..+||+|||+|.+++.+|...|+..++|+|+++.+++.|.+++...++.+ +.++++|+ ...+ ..++.+.+|.|
T Consensus 124 p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA-----~~ll-~~~~~~s~D~I 196 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDA-----RLLL-ELLPSNSVEKI 196 (390)
T ss_pred CeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCH-----HHhh-hhCCCCceeEE
Confidence 68999999999999999999999999999999999999999999988865 99999998 3221 23457899999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC-CHHHHHHHHHHc
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD-HLDKIKEWLGIC 294 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~-~~~~~~~~l~~~ 294 (322)
++|.|..+....+ . .+ +...++..+.++|+|||.+.+-+.+. ....+.+.+.+.
T Consensus 197 ~lnFPdPW~KkrH---R---------Rl--------v~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~ 251 (390)
T PRK14121 197 FVHFPVPWDKKPH---R---------RV--------ISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKL 251 (390)
T ss_pred EEeCCCCccccch---h---------hc--------cHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhC
Confidence 9998754433211 0 01 14589999999999999998877643 344555555554
No 80
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.47 E-value=9.1e-13 Score=120.84 Aligned_cols=135 Identities=21% Similarity=0.247 Sum_probs=104.9
Q ss_pred cccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy7093 116 FIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF 195 (322)
Q Consensus 116 ~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~ 195 (322)
+-|-+-...+...+.+...-.. +..|||..||||.+.+.+... +++++|+|++..+++-|+.|++.+++.+ ..+.
T Consensus 176 ~~p~s~~P~lAR~mVNLa~v~~--G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~ 250 (347)
T COG1041 176 FRPGSMDPRLARAMVNLARVKR--GELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIED-YPVL 250 (347)
T ss_pred cCcCCcCHHHHHHHHHHhcccc--CCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCc-eeEE
Confidence 3344444556666766665553 379999999999999998877 8999999999999999999999999765 5555
Q ss_pred Ec-cCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 196 HA-EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 196 ~~-D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
.. |+ ..++ +....+|.|+++|||..+....... =.++|+.+++.+.+.|++||+
T Consensus 251 ~~~Da------~~lp--l~~~~vdaIatDPPYGrst~~~~~~-----------------l~~Ly~~~le~~~evLk~gG~ 305 (347)
T COG1041 251 KVLDA------TNLP--LRDNSVDAIATDPPYGRSTKIKGEG-----------------LDELYEEALESASEVLKPGGR 305 (347)
T ss_pred Eeccc------ccCC--CCCCccceEEecCCCCccccccccc-----------------HHHHHHHHHHHHHHHhhcCcE
Confidence 55 87 3344 4555799999999998776543211 125689999999999999999
Q ss_pred EEEEEc
Q psy7093 275 IFLETN 280 (322)
Q Consensus 275 l~~e~~ 280 (322)
++|-..
T Consensus 306 ~vf~~p 311 (347)
T COG1041 306 IVFAAP 311 (347)
T ss_pred EEEecC
Confidence 999666
No 81
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.47 E-value=2.6e-13 Score=102.47 Aligned_cols=95 Identities=21% Similarity=0.269 Sum_probs=74.0
Q ss_pred EEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEc
Q psy7093 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223 (322)
Q Consensus 144 LDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~N 223 (322)
||+|||+|..+..+++. +..+|+++|+++.+++.++++.... ++.+.++|+ ..++ +++++||+|+++
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~------~~l~--~~~~sfD~v~~~ 67 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDA------EDLP--FPDNSFDVVFSN 67 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBT------TSSS--S-TT-EEEEEEE
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhccccc----CchheeehH------HhCc--cccccccccccc
Confidence 79999999999999998 8899999999999999999877543 366899998 3333 467899999996
Q ss_pred CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 224 PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 224 PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
--+.... -..++++++.++|||||+++|
T Consensus 68 ~~~~~~~--------------------------~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 68 SVLHHLE--------------------------DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp SHGGGSS--------------------------HHHHHHHHHHHHEEEEEEEEE
T ss_pred cceeecc--------------------------CHHHHHHHHHHHcCcCeEEeC
Confidence 4433221 156899999999999999986
No 82
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.47 E-value=9.8e-13 Score=114.04 Aligned_cols=101 Identities=16% Similarity=0.261 Sum_probs=80.4
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|..+..+++. +.+|+|+|+|+.+++.+++++...++. ++++...|+ .+. + ..++||+|
T Consensus 32 ~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~-~v~~~~~d~-----~~~-~---~~~~fD~I 99 (197)
T PRK11207 32 GKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLD-NLHTAVVDL-----NNL-T---FDGEYDFI 99 (197)
T ss_pred CcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCC-cceEEecCh-----hhC-C---cCCCcCEE
Confidence 78999999999999999987 679999999999999999999888775 488888998 322 1 23579999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+++..++.. +++ ....+++.+.++|+|||++++
T Consensus 100 ~~~~~~~~~------~~~------------------~~~~~l~~i~~~LkpgG~~~~ 132 (197)
T PRK11207 100 LSTVVLMFL------EAK------------------TIPGLIANMQRCTKPGGYNLI 132 (197)
T ss_pred EEecchhhC------CHH------------------HHHHHHHHHHHHcCCCcEEEE
Confidence 998654221 111 145899999999999999655
No 83
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.47 E-value=1.7e-13 Score=119.15 Aligned_cols=106 Identities=21% Similarity=0.328 Sum_probs=84.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||.|.++..+|+. +++|+|+|+++++++.|+..+...++. +.+.+..+ +.+.. ..++||+
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~------edl~~--~~~~FDv 127 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATV------EDLAS--AGGQFDV 127 (243)
T ss_pred CCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhH------HHHHh--cCCCccE
Confidence 489999999999999999999 799999999999999999999888865 66777766 22221 2379999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
|+|. ||..|=|. .+.+++.+.+++||||.+++.+-++.
T Consensus 128 V~cm--------------EVlEHv~d------------p~~~~~~c~~lvkP~G~lf~STinrt 165 (243)
T COG2227 128 VTCM--------------EVLEHVPD------------PESFLRACAKLVKPGGILFLSTINRT 165 (243)
T ss_pred EEEh--------------hHHHccCC------------HHHHHHHHHHHcCCCcEEEEeccccC
Confidence 9994 33333222 34799999999999999999876554
No 84
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.46 E-value=5.8e-12 Score=116.26 Aligned_cols=181 Identities=17% Similarity=0.141 Sum_probs=115.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHc-CCCceeEecceeecCeEEEeCCCCcccCch-hHHHHHHHHHHhccCCCCCCeEEEEc
Q psy7093 70 KNTELTNDQITHLNKLCECRLA-RMPVQYIIKEWNFRDLTLKMTPPVFIPRSE-TEELIDIITDKLESSNHTPTRMIEIG 147 (322)
Q Consensus 70 ~~~~l~~~~~~~~~~~~~rr~~-~~p~~yi~g~~~f~~~~~~v~~~~~iprp~-te~lv~~i~~~~~~~~~~~~~iLDlg 147 (322)
...++++++.+.++..+++... +.| . |.. .++.+|... .+...+.++..+... ++.+|||+|
T Consensus 66 ~~~~~~~~~~~~l~~~l~~l~p~~~~------~-------~~l-~~~~~~~e~~s~~~~~~~l~~l~~~--~g~~VLDvG 129 (314)
T TIGR00452 66 KSNPLSAGQIKRILEEIMALMPWRKG------P-------FEL-SGIKIDSEWRSDIKWDRVLPHLSPL--KGRTILDVG 129 (314)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCC------C-------ccc-ccccCCHHHHHHHHHHHHHHhcCCC--CCCEEEEec
Confidence 4567899999999888766431 111 1 111 122332111 222234455555433 337999999
Q ss_pred CchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCC
Q psy7093 148 SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYV 227 (322)
Q Consensus 148 ~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~ 227 (322)
||+|.++..++... ...|+|+|.|+.++..++...+..+...++.+...++ +.++ ....||+|+|+--..
T Consensus 130 CG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~i------e~lp---~~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 130 CGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGI------EQLH---ELYAFDTVFSMGVLY 199 (314)
T ss_pred cCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCH------HHCC---CCCCcCEEEEcchhh
Confidence 99999999888773 3479999999999877654333333334688888887 3333 234799999964322
Q ss_pred CCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc----CC--------------------C
Q psy7093 228 PSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN----HD--------------------H 283 (322)
Q Consensus 228 ~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~----~~--------------------~ 283 (322)
...+ ...+++++.+.|+|||.+++++- .. .
T Consensus 200 H~~d--------------------------p~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~k~~nv~flpS 253 (314)
T TIGR00452 200 HRKS--------------------------PLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYAKMKNVYFIPS 253 (314)
T ss_pred ccCC--------------------------HHHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHHhccccccCCC
Confidence 2111 23688999999999999998731 10 2
Q ss_pred HHHHHHHHHHcCCCCceeeEEEe
Q psy7093 284 LDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 284 ~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
...+..++++.| |..+++.
T Consensus 254 ~~~L~~~L~~aG----F~~V~i~ 272 (314)
T TIGR00452 254 VSALKNWLEKVG----FENFRIL 272 (314)
T ss_pred HHHHHHHHHHCC----CeEEEEE
Confidence 356677888875 7877655
No 85
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=5.3e-12 Score=105.88 Aligned_cols=75 Identities=24% Similarity=0.469 Sum_probs=65.4
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..|+|+|||||.+++.++.. +..+|+|+|+++++++.+++|+... ..++.|+.+|+ .. ..+++|.+
T Consensus 47 ~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~~l--~g~v~f~~~dv------~~-----~~~~~dtv 112 (198)
T COG2263 47 KTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAEEL--LGDVEFVVADV------SD-----FRGKFDTV 112 (198)
T ss_pred CEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHHhh--CCceEEEEcch------hh-----cCCccceE
Confidence 68999999999999998876 5689999999999999999999884 45699999999 22 35789999
Q ss_pred EEcCCCCCC
Q psy7093 221 VSNPPYVPS 229 (322)
Q Consensus 221 v~NPPy~~~ 229 (322)
+.||||...
T Consensus 113 imNPPFG~~ 121 (198)
T COG2263 113 IMNPPFGSQ 121 (198)
T ss_pred EECCCCccc
Confidence 999999865
No 86
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.46 E-value=2.3e-12 Score=117.19 Aligned_cols=127 Identities=19% Similarity=0.213 Sum_probs=95.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|..++.+++.. +..+|+++|+++.+++.|++|....++. +++++.+|+ . .++ +..+.||
T Consensus 78 g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~-~v~~~~~d~-----~-~l~--~~~~~fD 148 (272)
T PRK11873 78 GETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYT-NVEFRLGEI-----E-ALP--VADNSVD 148 (272)
T ss_pred CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCC-CEEEEEcch-----h-hCC--CCCCcee
Confidence 3799999999999888777764 4468999999999999999999888875 689999998 2 232 2456899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE-------------------
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET------------------- 279 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~------------------- 279 (322)
+|++|..+....+ ...+++++.++|||||.+++.-
T Consensus 149 ~Vi~~~v~~~~~d--------------------------~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~~~~~~~~~ 202 (272)
T PRK11873 149 VIISNCVINLSPD--------------------------KERVFKEAFRVLKPGGRFAISDVVLRGELPEEIRNDAELYA 202 (272)
T ss_pred EEEEcCcccCCCC--------------------------HHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHHHHhHHHHh
Confidence 9999864432221 2478999999999999998731
Q ss_pred ----cCCCHHHHHHHHHHcCCCCceeeEEE
Q psy7093 280 ----NHDHLDKIKEWLGICGHHMKLKLVEN 305 (322)
Q Consensus 280 ----~~~~~~~~~~~l~~~~~~~~~~~v~~ 305 (322)
+..+...+.++++..| |..+++
T Consensus 203 ~~~~~~~~~~e~~~~l~~aG----f~~v~i 228 (272)
T PRK11873 203 GCVAGALQEEEYLAMLAEAG----FVDITI 228 (272)
T ss_pred ccccCCCCHHHHHHHHHHCC----CCceEE
Confidence 1124556777888776 555544
No 87
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.46 E-value=1.7e-12 Score=114.61 Aligned_cols=120 Identities=18% Similarity=0.237 Sum_probs=93.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
++|||+|||+|..+..+++.+|+.+|+|+|+|+.+++.|++++...++.++++++..|+ ... + ..++||+|
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~-----~~~-~---~~~~fD~I 71 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDS-----AKD-P---FPDTYDLV 71 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccc-----ccC-C---CCCCCCEe
Confidence 36999999999999999999888899999999999999999999888888899999998 332 1 23589999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC----------------CCH
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH----------------DHL 284 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~----------------~~~ 284 (322)
+++-.+....+ ...+++.+.++|+|||.+++.... ...
T Consensus 72 ~~~~~l~~~~~--------------------------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~s~ 125 (224)
T smart00828 72 FGFEVIHHIKD--------------------------KMDLFSNISRHLKDGGHLVLADFIANLLSAIEHEETTSYLVTR 125 (224)
T ss_pred ehHHHHHhCCC--------------------------HHHHHHHHHHHcCCCCEEEEEEcccccCccccccccccccCCH
Confidence 98532222111 347899999999999998874211 113
Q ss_pred HHHHHHHHHcC
Q psy7093 285 DKIKEWLGICG 295 (322)
Q Consensus 285 ~~~~~~l~~~~ 295 (322)
..+.+++.+.|
T Consensus 126 ~~~~~~l~~~G 136 (224)
T smart00828 126 EEWAELLARNN 136 (224)
T ss_pred HHHHHHHHHCC
Confidence 55667787776
No 88
>KOG1271|consensus
Probab=99.46 E-value=6.3e-12 Score=104.37 Aligned_cols=146 Identities=22% Similarity=0.320 Sum_probs=101.5
Q ss_pred hHHHHHHHHHHhc----cCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 122 TEELIDIITDKLE----SSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 122 te~lv~~i~~~~~----~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.+.+++++.+... ... ..+|||+|||.|.+...|+++--....+|+|.|+.|+++|+.-+++.++++.|+|.+.
T Consensus 48 e~riv~wl~d~~~~~rv~~~--A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~ 125 (227)
T KOG1271|consen 48 EERIVDWLKDLIVISRVSKQ--ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQL 125 (227)
T ss_pred HHHHHHHHHhhhhhhhhccc--ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEe
Confidence 4566777776655 221 1499999999999999999984445699999999999999988889999999999999
Q ss_pred cCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 198 EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 198 D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+ +.+ .+..++||+|.----|-.. .|.++- ..|. ....+....++|+|||++++
T Consensus 126 DI-----~~~---~~~~~qfdlvlDKGT~DAi----sLs~d~------------~~~r--~~~Y~d~v~~ll~~~gifvI 179 (227)
T KOG1271|consen 126 DI-----TDP---DFLSGQFDLVLDKGTLDAI----SLSPDG------------PVGR--LVVYLDSVEKLLSPGGIFVI 179 (227)
T ss_pred ec-----cCC---cccccceeEEeecCceeee----ecCCCC------------cccc--eeeehhhHhhccCCCcEEEE
Confidence 99 433 1245677777642111100 011110 0110 01344556788999999999
Q ss_pred EEcCCCHHHHHHHHHHcC
Q psy7093 278 ETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 278 e~~~~~~~~~~~~l~~~~ 295 (322)
--++-..+++.+.+...+
T Consensus 180 tSCN~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 180 TSCNFTKDELVEEFENFN 197 (227)
T ss_pred EecCccHHHHHHHHhcCC
Confidence 777878888888888765
No 89
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.45 E-value=2.3e-12 Score=112.95 Aligned_cols=116 Identities=14% Similarity=0.198 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
..++..+++.+... ++.+|||+|||||+++..+++..+ ..+|+++|+++++++.|++|++..+.. +++++++|.
T Consensus 62 p~~~~~~~~~l~~~--~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~-~v~~~~gd~-- 136 (212)
T PRK13942 62 IHMVAIMCELLDLK--EGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYD-NVEVIVGDG-- 136 (212)
T ss_pred HHHHHHHHHHcCCC--CcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCc--
Confidence 34555666666544 237999999999999999988753 469999999999999999999988875 599999998
Q ss_pred cccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
....+ ..++||+|+++-.. . .+...+.+.|+|||.+++.++.
T Consensus 137 ---~~~~~---~~~~fD~I~~~~~~------~--------------------------~~~~~l~~~LkpgG~lvi~~~~ 178 (212)
T PRK13942 137 ---TLGYE---ENAPYDRIYVTAAG------P--------------------------DIPKPLIEQLKDGGIMVIPVGS 178 (212)
T ss_pred ---ccCCC---cCCCcCEEEECCCc------c--------------------------cchHHHHHhhCCCcEEEEEEcC
Confidence 44332 34689999985211 0 1223345679999999998764
No 90
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.45 E-value=1.6e-12 Score=116.14 Aligned_cols=105 Identities=22% Similarity=0.297 Sum_probs=82.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
+.+|||+|||+|..+..+++.+ |+.+++|+|+|+.+++.|++++...+...+++++++|+ .+ + +...+
T Consensus 54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~-----~~-~----~~~~~ 123 (239)
T TIGR00740 54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDI-----RH-V----EIKNA 123 (239)
T ss_pred CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECCh-----hh-C----CCCCC
Confidence 3689999999999999999864 68899999999999999999998776656799999998 32 2 22358
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
|+|+++-..+. ++++ -...+++++.+.|+|||.+++-
T Consensus 124 d~v~~~~~l~~------~~~~------------------~~~~~l~~i~~~LkpgG~l~i~ 160 (239)
T TIGR00740 124 SMVILNFTLQF------LPPE------------------DRIALLTKIYEGLNPNGVLVLS 160 (239)
T ss_pred CEEeeecchhh------CCHH------------------HHHHHHHHHHHhcCCCeEEEEe
Confidence 99998654322 1111 1347899999999999998874
No 91
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.45 E-value=8.3e-12 Score=110.76 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=109.1
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
..++..+... ++.+|||+|||+|.++..++...| ..+++++|+++.+++.+++++...++..++.++.+|+ .
T Consensus 41 ~~~~~~~~~~--~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~-----~ 113 (239)
T PRK00216 41 RKTIKWLGVR--PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDA-----E 113 (239)
T ss_pred HHHHHHhCCC--CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEeccc-----c
Confidence 3344444333 237999999999999999999876 6899999999999999999987766666799999998 3
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE-EcCC--
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE-TNHD-- 282 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e-~~~~-- 282 (322)
+. + ...+.||+|+++--.....+ ...+++.+.++|+|||.+++. +...
T Consensus 114 ~~-~--~~~~~~D~I~~~~~l~~~~~--------------------------~~~~l~~~~~~L~~gG~li~~~~~~~~~ 164 (239)
T PRK00216 114 AL-P--FPDNSFDAVTIAFGLRNVPD--------------------------IDKALREMYRVLKPGGRLVILEFSKPTN 164 (239)
T ss_pred cC-C--CCCCCccEEEEecccccCCC--------------------------HHHHHHHHHHhccCCcEEEEEEecCCCc
Confidence 32 1 23568999998532221111 347889999999999988653 2111
Q ss_pred ----------------------------------------CHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 283 ----------------------------------------HLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 283 ----------------------------------------~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
..+.+.+++++.| |..+++.....|.--++.+.|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG----f~~~~~~~~~~~~~~~~~~~~ 238 (239)
T PRK00216 165 PPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAG----FERVRYRNLTGGIVALHVGYK 238 (239)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCC----CceeeeeeeecCcEEEEEEec
Confidence 1234666777775 677777776667666666554
No 92
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.45 E-value=1.5e-12 Score=120.68 Aligned_cols=104 Identities=22% Similarity=0.299 Sum_probs=81.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++. +.+|+|+|.++++++.|+.++...+...+++++++|+ +.++ ...++||+
T Consensus 132 g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~da------e~l~--~~~~~FD~ 201 (322)
T PLN02396 132 GLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTA------EKLA--DEGRKFDA 201 (322)
T ss_pred CCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCH------HHhh--hccCCCCE
Confidence 368999999999999999875 7899999999999999999877655555799999997 3332 23568999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|++.-......+ ...+++.+.++|||||.+++.+
T Consensus 202 Vi~~~vLeHv~d--------------------------~~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 202 VLSLEVIEHVAN--------------------------PAEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred EEEhhHHHhcCC--------------------------HHHHHHHHHHHcCCCcEEEEEE
Confidence 999422211111 2478999999999999999875
No 93
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=99.44 E-value=8.6e-13 Score=122.35 Aligned_cols=159 Identities=17% Similarity=0.317 Sum_probs=97.0
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEE
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-------PKLKAIAIDQSKHACDLTEQNAVMHNVANQ-LQVF 195 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-------~~~~v~~vDis~~al~~A~~n~~~~~l~~~-i~~~ 195 (322)
.+++.+.+.+... ++.+|+|+|||+|.+.+++.... +..+++|+|+++.++.+|+.|+..++.... ..+.
T Consensus 33 ~i~~l~~~~~~~~--~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~ 110 (311)
T PF02384_consen 33 EIVDLMVKLLNPK--KGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINII 110 (311)
T ss_dssp HHHHHHHHHHTT---TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEE
T ss_pred HHHHHHHhhhhcc--ccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccc
Confidence 3444444554433 23689999999999999988743 678999999999999999999887765432 4688
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
++|. +..... ....+||+|++||||....-...-.....+|... .......+. .++..+.+.|++||.+
T Consensus 111 ~~d~-----l~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~Fi~~~l~~Lk~~G~~ 179 (311)
T PF02384_consen 111 QGDS-----LENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY---FPPKSNAEY--AFIEHALSLLKPGGRA 179 (311)
T ss_dssp ES-T-----TTSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCCTTC---SSSTTEHHH--HHHHHHHHTEEEEEEE
T ss_pred cccc-----cccccc-ccccccccccCCCCcccccccccccccccccccc---CCCccchhh--hhHHHHHhhcccccce
Confidence 8888 443211 1246899999999998762111000000011111 222223332 4889999999999998
Q ss_pred EEEEcC------CCHHHHHHHHHHcC
Q psy7093 276 FLETNH------DHLDKIKEWLGICG 295 (322)
Q Consensus 276 ~~e~~~------~~~~~~~~~l~~~~ 295 (322)
.+.++. .....+++.+-+.+
T Consensus 180 ~~Ilp~~~L~~~~~~~~iR~~ll~~~ 205 (311)
T PF02384_consen 180 AIILPNGFLFSSSSEKKIRKYLLENG 205 (311)
T ss_dssp EEEEEHHHHHGSTHHHHHHHHHHHHE
T ss_pred eEEecchhhhccchHHHHHHHHHhhc
Confidence 887643 23456777665544
No 94
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.44 E-value=7.9e-13 Score=119.95 Aligned_cols=116 Identities=22% Similarity=0.361 Sum_probs=84.5
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
++.+++.+.-. ++.+|||+|||.|.+++.+|+++ +++|+|+.+|+...+.|++.++..|+.+++++...|.
T Consensus 51 ~~~~~~~~~l~--~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~------ 121 (273)
T PF02353_consen 51 LDLLCEKLGLK--PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDY------ 121 (273)
T ss_dssp HHHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-G------
T ss_pred HHHHHHHhCCC--CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeec------
Confidence 34455555444 34899999999999999999997 7899999999999999999999999999999999998
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
..+ ..+||.|||= +.++++ |...+..+++.+.++|+|||.+++..
T Consensus 122 ~~~-----~~~fD~IvSi------~~~Ehv------------------g~~~~~~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 122 RDL-----PGKFDRIVSI------EMFEHV------------------GRKNYPAFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp GG--------S-SEEEEE------SEGGGT------------------CGGGHHHHHHHHHHHSETTEEEEEEE
T ss_pred ccc-----CCCCCEEEEE------echhhc------------------ChhHHHHHHHHHHHhcCCCcEEEEEe
Confidence 222 2389999992 111111 22337799999999999999998864
No 95
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.44 E-value=1.5e-12 Score=117.10 Aligned_cols=115 Identities=21% Similarity=0.386 Sum_probs=93.3
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
++.+.+.+.-. ++.++||+|||.|.+++.+|+++ +.+|+|+++|++..+.+++.++..|++.++++...|.
T Consensus 61 ~~~~~~kl~L~--~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~------ 131 (283)
T COG2230 61 LDLILEKLGLK--PGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY------ 131 (283)
T ss_pred HHHHHHhcCCC--CCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc------
Confidence 35566666655 34899999999999999999997 7999999999999999999999999998899999998
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
..+ .++||.|||= + .||- -|.+-|..+++.+.++|+|||.+++-
T Consensus 132 rd~-----~e~fDrIvSv------g----------mfEh--------vg~~~~~~ff~~~~~~L~~~G~~llh 175 (283)
T COG2230 132 RDF-----EEPFDRIVSV------G----------MFEH--------VGKENYDDFFKKVYALLKPGGRMLLH 175 (283)
T ss_pred ccc-----ccccceeeeh------h----------hHHH--------hCcccHHHHHHHHHhhcCCCceEEEE
Confidence 222 3459999991 1 1221 12234789999999999999998774
No 96
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.43 E-value=4.1e-12 Score=119.65 Aligned_cols=144 Identities=16% Similarity=0.301 Sum_probs=103.2
Q ss_pred eEEEeCCCCcc-c-CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 107 LTLKMTPPVFI-P-RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 107 ~~~~v~~~~~i-p-rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
..+.++++.|. + ....+.+++.+.+.+...+ .+|||+|||+|.+++.+++.. .+|+|+|+++.+++.|++|+.
T Consensus 166 ~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~---~~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~ 240 (353)
T TIGR02143 166 FIYRQVENSFTQPNAAVNIKMLEWACEVTQGSK---GDLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIA 240 (353)
T ss_pred EEEEECCCCcccCCHHHHHHHHHHHHHHhhcCC---CcEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHH
Confidence 67888888887 2 3345777888888775321 469999999999999999884 589999999999999999999
Q ss_pred HcCCCCcEEEEEccCCCcccccccCcC-----c---C-----CCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCC
Q psy7093 185 MHNVANQLQVFHAEIDSKGQVKNLQPD-----L---L-----EQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGG 251 (322)
Q Consensus 185 ~~~l~~~i~~~~~D~~~~~~~~~l~~~-----~---~-----~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g 251 (322)
.+++.+ ++++++|+ .+.+... + . ..+||+|+.|||.. + +.
T Consensus 241 ~~~~~~-v~~~~~d~-----~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPPR~--G----~~--------------- 293 (353)
T TIGR02143 241 ANNIDN-VQIIRMSA-----EEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPRA--G----LD--------------- 293 (353)
T ss_pred HcCCCc-EEEEEcCH-----HHHHHHHhhccccccccccccccCCCCEEEECCCCC--C----Cc---------------
Confidence 999864 99999998 4333210 0 0 12489999999942 1 11
Q ss_pred CChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHH
Q psy7093 252 HDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLG 292 (322)
Q Consensus 252 ~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~ 292 (322)
..+++.+.+ |++++++++++.....--..|.
T Consensus 294 -------~~~l~~l~~---~~~ivYvsC~p~tlaRDl~~L~ 324 (353)
T TIGR02143 294 -------PDTCKLVQA---YERILYISCNPETLKANLEQLS 324 (353)
T ss_pred -------HHHHHHHHc---CCcEEEEEcCHHHHHHHHHHHh
Confidence 134443333 7899999998765433333343
No 97
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.43 E-value=7.8e-13 Score=111.85 Aligned_cols=112 Identities=23% Similarity=0.253 Sum_probs=82.2
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
+.+++.+.... +.+|||+|||+|.++..+++. ..+++++|+++.+++.+++|+.. .++++++++|+ .+
T Consensus 3 ~~i~~~~~~~~--~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~-----~~ 70 (169)
T smart00650 3 DKIVRAANLRP--GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDA-----LK 70 (169)
T ss_pred HHHHHhcCCCC--cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECch-----hc
Confidence 44555554432 268999999999999999988 57999999999999999998854 24699999998 43
Q ss_pred ccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 207 ~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
.. +...+||.|++||||.... .++.++++. ..+.++|+++++..
T Consensus 71 ~~---~~~~~~d~vi~n~Py~~~~-------------------------~~i~~~l~~--~~~~~~~~l~~q~e 114 (169)
T smart00650 71 FD---LPKLQPYKVVGNLPYNIST-------------------------PILFKLLEE--PPAFRDAVLMVQKE 114 (169)
T ss_pred CC---ccccCCCEEEECCCcccHH-------------------------HHHHHHHhc--CCCcceEEEEEEHH
Confidence 32 1334699999999997432 123445443 22558899988763
No 98
>PRK04457 spermidine synthase; Provisional
Probab=99.42 E-value=7.8e-12 Score=113.04 Aligned_cols=115 Identities=14% Similarity=0.256 Sum_probs=88.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++..|..+++++|+++.+++.|++++...+..++++++.+|. .+.+.. ..++||+
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da-----~~~l~~--~~~~yD~ 139 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADG-----AEYIAV--HRHSTDV 139 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCH-----HHHHHh--CCCCCCE
Confidence 478999999999999999999999999999999999999999876554456799999998 444432 2358999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
|++|. |.... .+. .+ ....+++.+.+.|+|||++++.+....
T Consensus 140 I~~D~-~~~~~----~~~---------~l--------~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 140 ILVDG-FDGEG----IID---------AL--------CTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred EEEeC-CCCCC----Ccc---------cc--------CcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 99984 22211 000 00 135899999999999999998764433
No 99
>PRK00811 spermidine synthase; Provisional
Probab=99.42 E-value=8e-12 Score=114.26 Aligned_cols=148 Identities=18% Similarity=0.271 Sum_probs=101.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--C--CCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN--V--ANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~--l--~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
+.+||++|||+|.++..+++..+..+|+++|+++.+++.|++++...+ . ..+++++.+|. ...+.. ..+
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da-----~~~l~~--~~~ 149 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDG-----IKFVAE--TEN 149 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECch-----HHHHhh--CCC
Confidence 479999999999999999887556799999999999999999886532 2 45799999998 554432 356
Q ss_pred CeeEEEEcC--CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHHHHHHHH
Q psy7093 216 KFDLVVSNP--PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLDKIKEWL 291 (322)
Q Consensus 216 ~fDlIv~NP--Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l 291 (322)
+||+|++|. |+.+... | +.+.+++.+.+.|+|||++++..+. .+...+..+.
T Consensus 150 ~yDvIi~D~~dp~~~~~~----------------l--------~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~ 205 (283)
T PRK00811 150 SFDVIIVDSTDPVGPAEG----------------L--------FTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMH 205 (283)
T ss_pred cccEEEECCCCCCCchhh----------------h--------hHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHH
Confidence 899999974 4422110 0 1357888899999999999987653 2344444444
Q ss_pred HHcCCCCceeeEEEecC----C-CCCCeEEEEEE
Q psy7093 292 GICGHHMKLKLVENYKD----F-NNKDRFVELKL 320 (322)
Q Consensus 292 ~~~~~~~~~~~v~~~~D----~-~g~~R~~~~~~ 320 (322)
+.-.. -|..+..+.. . .|..-|+.+.+
T Consensus 206 ~tl~~--~F~~v~~~~~~vp~~~~~~w~f~~as~ 237 (283)
T PRK00811 206 RKLKE--VFPIVRPYQAAIPTYPSGLWSFTFASK 237 (283)
T ss_pred HHHHH--HCCCEEEEEeECCcccCchheeEEeec
Confidence 33221 2444544432 1 24455666654
No 100
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.42 E-value=4.1e-12 Score=114.17 Aligned_cols=112 Identities=19% Similarity=0.195 Sum_probs=84.5
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
...+.+++.+... .+.+|||+|||+|.++..++.. +.+|+++|+|+.+++.|+++.. ...++++|+
T Consensus 29 ~~a~~l~~~l~~~--~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~---- 94 (251)
T PRK10258 29 QSADALLAMLPQR--KFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDA------ADHYLAGDI---- 94 (251)
T ss_pred HHHHHHHHhcCcc--CCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCc----
Confidence 3445555555543 2378999999999999888775 6799999999999999987642 246788888
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+.++ +..++||+|++|.++....+ ...++.++.++|+|||.+++.+
T Consensus 95 --~~~~--~~~~~fD~V~s~~~l~~~~d--------------------------~~~~l~~~~~~Lk~gG~l~~~~ 140 (251)
T PRK10258 95 --ESLP--LATATFDLAWSNLAVQWCGN--------------------------LSTALRELYRVVRPGGVVAFTT 140 (251)
T ss_pred --ccCc--CCCCcEEEEEECchhhhcCC--------------------------HHHHHHHHHHHcCCCeEEEEEe
Confidence 2222 34568999999987654332 3478899999999999998864
No 101
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.42 E-value=1.6e-11 Score=107.77 Aligned_cols=151 Identities=16% Similarity=0.167 Sum_probs=108.4
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
..+++.+... ++.+|||+|||+|.++..+++..+. .+++++|+++.+++.++++.. ...++.++.+|+ .
T Consensus 29 ~~~~~~~~~~--~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~-----~ 98 (223)
T TIGR01934 29 RRAVKLIGVF--KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADA-----E 98 (223)
T ss_pred HHHHHHhccC--CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecch-----h
Confidence 3344444333 3479999999999999999999876 699999999999999998875 345689999998 3
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE-c-CC-
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET-N-HD- 282 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~-~-~~- 282 (322)
+. + +..++||+|+++-.+....+ ...+++.+.+.|+|||.+++.. . ..
T Consensus 99 ~~-~--~~~~~~D~i~~~~~~~~~~~--------------------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~ 149 (223)
T TIGR01934 99 AL-P--FEDNSFDAVTIAFGLRNVTD--------------------------IQKALREMYRVLKPGGRLVILEFSKPAN 149 (223)
T ss_pred cC-C--CCCCcEEEEEEeeeeCCccc--------------------------HHHHHHHHHHHcCCCcEEEEEEecCCCc
Confidence 32 2 23568999998643322111 3478999999999999987621 1 00
Q ss_pred ----------------------------------------CHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 283 ----------------------------------------HLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 283 ----------------------------------------~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
..+.+.+++.+.| |..+.+...-.|...++++++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG----f~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 150 ALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAG----FEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred hhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcC----CccceeeeeecceeeEEEecC
Confidence 2344667777775 677777777777778887754
No 102
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.42 E-value=2.1e-11 Score=113.43 Aligned_cols=183 Identities=17% Similarity=0.183 Sum_probs=114.9
Q ss_pred cCCCCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCc
Q psy7093 70 KNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSG 149 (322)
Q Consensus 70 ~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~G 149 (322)
...+++.++.+.+........ .|--|...+.+... .. ........+.+...+.... +.+|||+|||
T Consensus 67 ~~~~~~~~~~~~l~~~l~~~~-----pwrkg~~~~~~~~~--~~-----ew~s~~k~~~l~~~l~~l~--g~~VLDIGCG 132 (322)
T PRK15068 67 SEEPLSEGQRKRIENLLRALM-----PWRKGPFSLFGIHI--DT-----EWRSDWKWDRVLPHLSPLK--GRTVLDVGCG 132 (322)
T ss_pred cCCCCCHHHHHHHHHHHHhhc-----CcccCCccccCeee--cc-----eehHHhHHHHHHHhhCCCC--CCEEEEeccC
Confidence 356788888888877665543 23333322222111 10 0011222344555554332 3799999999
Q ss_pred hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCC
Q psy7093 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPS 229 (322)
Q Consensus 150 sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~ 229 (322)
+|.++..++... ...|+|+|.|+.++..++......+...++.++.+|+ +.++ . .++||+|+|+--....
T Consensus 133 ~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~------e~lp--~-~~~FD~V~s~~vl~H~ 202 (322)
T PRK15068 133 NGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGI------EQLP--A-LKAFDTVFSMGVLYHR 202 (322)
T ss_pred CcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCH------HHCC--C-cCCcCEEEECChhhcc
Confidence 999999999884 3469999999998876554433333344699999997 3333 1 5689999995221111
Q ss_pred CCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc---C-C--------------------CHH
Q psy7093 230 LDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN---H-D--------------------HLD 285 (322)
Q Consensus 230 ~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~---~-~--------------------~~~ 285 (322)
.+ ...+++++.+.|+|||.++++.- . . ...
T Consensus 203 ~d--------------------------p~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~~~~~~~lps~~ 256 (322)
T PRK15068 203 RS--------------------------PLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAKMRNVYFIPSVP 256 (322)
T ss_pred CC--------------------------HHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhcCccceeCCCHH
Confidence 11 34789999999999999998731 0 0 235
Q ss_pred HHHHHHHHcCCCCceeeEEEe
Q psy7093 286 KIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 286 ~~~~~l~~~~~~~~~~~v~~~ 306 (322)
.+.+++++.| |..+++.
T Consensus 257 ~l~~~L~~aG----F~~i~~~ 273 (322)
T PRK15068 257 ALKNWLERAG----FKDVRIV 273 (322)
T ss_pred HHHHHHHHcC----CceEEEE
Confidence 6788888886 6766654
No 103
>PRK08317 hypothetical protein; Provisional
Probab=99.41 E-value=1.5e-11 Score=108.93 Aligned_cols=123 Identities=17% Similarity=0.235 Sum_probs=92.1
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
||..+.+.+.+++.+.... +.+|||+|||+|.++..++..+ |..+++|+|+|+.+++.|+++... ...++++..+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~--~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~--~~~~~~~~~~ 76 (241)
T PRK08317 1 LPDFRRYRARTFELLAVQP--GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG--LGPNVEFVRG 76 (241)
T ss_pred CchHHHHHHHHHHHcCCCC--CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--CCCceEEEec
Confidence 3455666677777666543 3799999999999999999987 678999999999999999988332 2345899999
Q ss_pred cCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 198 EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 198 D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+ .. .+ +..++||+|+++-.+....+ ...+++.+.++|+|||.+++
T Consensus 77 d~-----~~-~~--~~~~~~D~v~~~~~~~~~~~--------------------------~~~~l~~~~~~L~~gG~l~~ 122 (241)
T PRK08317 77 DA-----DG-LP--FPDGSFDAVRSDRVLQHLED--------------------------PARALAEIARVLRPGGRVVV 122 (241)
T ss_pred cc-----cc-CC--CCCCCceEEEEechhhccCC--------------------------HHHHHHHHHHHhcCCcEEEE
Confidence 87 22 21 24578999999754432221 24788999999999999887
Q ss_pred EE
Q psy7093 278 ET 279 (322)
Q Consensus 278 e~ 279 (322)
+.
T Consensus 123 ~~ 124 (241)
T PRK08317 123 LD 124 (241)
T ss_pred Ee
Confidence 54
No 104
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=5.7e-12 Score=120.87 Aligned_cols=151 Identities=20% Similarity=0.298 Sum_probs=115.0
Q ss_pred CeEEEeCCCCcc--cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFI--PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 106 ~~~~~v~~~~~i--prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
+..+.+.++.|+ ...-++.+++++++++..... .++||+.||.|.|++.+|+. ..+|+|+|+++++++.|++|+
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~--~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA 335 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWLELAGG--ERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENA 335 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhcCC--CEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHH
Confidence 477888888887 345667888999999887533 78999999999999999976 689999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
+.+++.| ++|..+|+ .+..........+|.||.|||=--.. +.+++
T Consensus 336 ~~n~i~N-~~f~~~~a-----e~~~~~~~~~~~~d~VvvDPPR~G~~----------------------------~~~lk 381 (432)
T COG2265 336 AANGIDN-VEFIAGDA-----EEFTPAWWEGYKPDVVVVDPPRAGAD----------------------------REVLK 381 (432)
T ss_pred HHcCCCc-EEEEeCCH-----HHHhhhccccCCCCEEEECCCCCCCC----------------------------HHHHH
Confidence 9999987 99999998 44333211235789999999943211 13444
Q ss_pred HHhccCccCcEEEEEEcCCCHHHHHHHHHHcC
Q psy7093 264 FGSNYLKPNGSIFLETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~ 295 (322)
.+. .++|..++++.+.+.....-...+.+.|
T Consensus 382 ~l~-~~~p~~IvYVSCNP~TlaRDl~~L~~~g 412 (432)
T COG2265 382 QLA-KLKPKRIVYVSCNPATLARDLAILASTG 412 (432)
T ss_pred HHH-hcCCCcEEEEeCCHHHHHHHHHHHHhCC
Confidence 443 4678889999888766555555555555
No 105
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.41 E-value=1.9e-12 Score=111.41 Aligned_cols=142 Identities=15% Similarity=0.292 Sum_probs=91.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||+|||+|.++..++... +..+|+++|+|+.+ .. .+++++++|+.+......+......++||
T Consensus 33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 4799999999999999998876 45689999999853 12 23788888882211000000112356799
Q ss_pred EEEEcCC--CCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-CCHHHHHHHHHHcC
Q psy7093 219 LVVSNPP--YVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-DHLDKIKEWLGICG 295 (322)
Q Consensus 219 lIv~NPP--y~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-~~~~~~~~~l~~~~ 295 (322)
+|++|++ +........+ ......+.++..+.++|+|||.+++++.. .....+-..++..
T Consensus 101 ~V~~~~~~~~~g~~~~~~~-----------------~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~~~- 162 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHL-----------------RSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELRKL- 162 (188)
T ss_pred EEEcCCCCCCCCCccccHH-----------------HHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHHhh-
Confidence 9999853 3211111000 00122468899999999999999997633 2233344444442
Q ss_pred CCCceeeEEEecCCCCCCeE
Q psy7093 296 HHMKLKLVENYKDFNNKDRF 315 (322)
Q Consensus 296 ~~~~~~~v~~~~D~~g~~R~ 315 (322)
|..+++.+|..|+++-
T Consensus 163 ----~~~~~~~~~~~~~~~~ 178 (188)
T TIGR00438 163 ----FEKVKVTKPQASRKRS 178 (188)
T ss_pred ----hceEEEeCCCCCCccc
Confidence 6788999999998753
No 106
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.41 E-value=9.7e-12 Score=112.62 Aligned_cols=115 Identities=19% Similarity=0.302 Sum_probs=85.0
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
...++..+... ++.+|||+|||+|..+..++..+ +.+|+|+|+|+.+++.|+++... .+++.+.++|+ .
T Consensus 41 ~~~~l~~l~l~--~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~-----~ 109 (263)
T PTZ00098 41 TTKILSDIELN--ENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDI-----L 109 (263)
T ss_pred HHHHHHhCCCC--CCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCc-----c
Confidence 34555555443 23799999999999999998764 67999999999999999987653 34699999998 3
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
. . .++.++||+|+++..+.... . +-...+++++.++|||||.+++.
T Consensus 110 ~-~--~~~~~~FD~V~s~~~l~h~~------~------------------~d~~~~l~~i~r~LkPGG~lvi~ 155 (263)
T PTZ00098 110 K-K--DFPENTFDMIYSRDAILHLS------Y------------------ADKKKLFEKCYKWLKPNGILLIT 155 (263)
T ss_pred c-C--CCCCCCeEEEEEhhhHHhCC------H------------------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 2 1 13467899999964322111 0 01347999999999999999874
No 107
>PRK06922 hypothetical protein; Provisional
Probab=99.41 E-value=1.9e-12 Score=127.73 Aligned_cols=120 Identities=17% Similarity=0.281 Sum_probs=90.0
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|..+..++..+|+.+|+|+|+|+.+++.|+++....+ .++.++++|. .+ ++..++.++||+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa-----~d-Lp~~fedeSFDv 490 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDA-----IN-LSSSFEKESVDT 490 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcch-----Hh-CccccCCCCEEE
Confidence 479999999999999999998899999999999999999998876554 3488899998 32 332245678999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
|++|++++.... |-| ..++..+......+++.+.+.|||||.+++.-+
T Consensus 491 VVsn~vLH~L~s----------yIp---~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 491 IVYSSILHELFS----------YIE---YEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred EEEchHHHhhhh----------hcc---cccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 999987653211 000 001112234467899999999999999988543
No 108
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.40 E-value=4.3e-12 Score=116.40 Aligned_cols=101 Identities=15% Similarity=0.222 Sum_probs=80.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|..++.+++. +.+|+|+|+|+.+++.+++++...++ ++++...|+ ... . ..++||+|
T Consensus 122 ~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~-----~~~-~---~~~~fD~I 188 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDI-----NSA-S---IQEEYDFI 188 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEech-----hcc-c---ccCCccEE
Confidence 68999999999999999986 68999999999999999999988887 488888887 221 1 25689999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+++..++... + +-...+++.+.++|+|||++++.
T Consensus 189 ~~~~vl~~l~------~------------------~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 189 LSTVVLMFLN------R------------------ERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred EEcchhhhCC------H------------------HHHHHHHHHHHHhcCCCcEEEEE
Confidence 9976543211 1 11457899999999999996653
No 109
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.39 E-value=5.2e-13 Score=103.04 Aligned_cols=97 Identities=27% Similarity=0.494 Sum_probs=72.7
Q ss_pred EEEEcCchhHHHHHHHHhC---CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 143 MIEIGSGTGAITISLLKHF---PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 143 iLDlg~GsG~~~~~la~~~---~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
|||+|||+|..+..++..+ |..+++|+|+|+.+++.++++....+. +++++++|+ . .++ ...++||+
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~-----~-~l~--~~~~~~D~ 70 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADA-----R-DLP--FSDGKFDL 70 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCT-----T-CHH--HHSSSEEE
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCH-----h-HCc--ccCCCeeE
Confidence 7999999999999999986 458999999999999999999887665 589999998 2 232 24569999
Q ss_pred EEEc-CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 220 VVSN-PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 220 Iv~N-PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
|++. -.+. .++++ ..+.+++++.++|+|||
T Consensus 71 v~~~~~~~~------~~~~~------------------~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 71 VVCSGLSLH------HLSPE------------------ELEALLRRIARLLRPGG 101 (101)
T ss_dssp EEE-TTGGG------GSSHH------------------HHHHHHHHHHHTEEEEE
T ss_pred EEEcCCccC------CCCHH------------------HHHHHHHHHHHHhCCCC
Confidence 9993 2121 12222 25689999999999998
No 110
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.39 E-value=1e-11 Score=108.77 Aligned_cols=111 Identities=19% Similarity=0.198 Sum_probs=85.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
++..+++.+.... +.+|||+|||+|.++..+++.. .+|+++|+++.+++.|++|+...++.+ +++.++|.
T Consensus 66 ~~~~l~~~l~~~~--~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~----- 135 (212)
T PRK00312 66 MVARMTELLELKP--GDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDG----- 135 (212)
T ss_pred HHHHHHHhcCCCC--CCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCc-----
Confidence 4455555555442 3799999999999999888773 489999999999999999999988765 99999998
Q ss_pred ccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
.+.++ ..++||+|+++.+.. .+.+.+.+.|+|||.+++.++
T Consensus 136 ~~~~~---~~~~fD~I~~~~~~~--------------------------------~~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 136 WKGWP---AYAPFDRILVTAAAP--------------------------------EIPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred ccCCC---cCCCcCEEEEccCch--------------------------------hhhHHHHHhcCCCcEEEEEEc
Confidence 44332 246899999975421 123345688999999999887
No 111
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.39 E-value=2e-11 Score=113.06 Aligned_cols=101 Identities=26% Similarity=0.489 Sum_probs=81.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.+++.+++.+|+.+++++|. +.+++.+++|+...++.++++++.+|+ ++.. + +.+|+|
T Consensus 151 ~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~-----~~~~---~--~~~D~v 219 (306)
T TIGR02716 151 KKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDI-----YKES---Y--PEADAV 219 (306)
T ss_pred CEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCc-----cCCC---C--CCCCEE
Confidence 7999999999999999999999999999998 789999999999999988999999998 5321 1 236887
Q ss_pred EE-cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 221 VS-NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 221 v~-NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
++ +-.+. ..+ +....+++++.+.|+|||.+++
T Consensus 220 ~~~~~lh~-------~~~------------------~~~~~il~~~~~~L~pgG~l~i 252 (306)
T TIGR02716 220 LFCRILYS-------ANE------------------QLSTIMCKKAFDAMRSGGRLLI 252 (306)
T ss_pred EeEhhhhc-------CCh------------------HHHHHHHHHHHHhcCCCCEEEE
Confidence 65 32111 111 1135799999999999999866
No 112
>PLN02476 O-methyltransferase
Probab=99.38 E-value=4.1e-12 Score=114.75 Aligned_cols=121 Identities=14% Similarity=0.278 Sum_probs=98.8
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.|++..+...+....+. ++|||+|||+|+.++++|...| +.+|+++|.+++..+.|++|+++.|+.++++++.+
T Consensus 103 ~~~~g~lL~~L~~~~~a-----k~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~G 177 (278)
T PLN02476 103 SPDQAQLLAMLVQILGA-----ERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHG 177 (278)
T ss_pred CHHHHHHHHHHHHhcCC-----CeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEc
Confidence 56777777777666543 7999999999999999999875 56899999999999999999999999989999999
Q ss_pred cCCCcccccccCcCc---CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 198 EIDSKGQVKNLQPDL---LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 198 D~~~~~~~~~l~~~~---~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
|+ .+.++... ..++||+|+.+++- .-|..+++.+.++|+|||.
T Consensus 178 dA-----~e~L~~l~~~~~~~~FD~VFIDa~K-----------------------------~~Y~~y~e~~l~lL~~GGv 223 (278)
T PLN02476 178 LA-----AESLKSMIQNGEGSSYDFAFVDADK-----------------------------RMYQDYFELLLQLVRVGGV 223 (278)
T ss_pred CH-----HHHHHHHHhcccCCCCCEEEECCCH-----------------------------HHHHHHHHHHHHhcCCCcE
Confidence 98 55543211 13589999997642 1267888999999999999
Q ss_pred EEEE
Q psy7093 275 IFLE 278 (322)
Q Consensus 275 l~~e 278 (322)
+++.
T Consensus 224 IV~D 227 (278)
T PLN02476 224 IVMD 227 (278)
T ss_pred EEEe
Confidence 9884
No 113
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.38 E-value=5.7e-12 Score=109.76 Aligned_cols=111 Identities=13% Similarity=0.216 Sum_probs=80.9
Q ss_pred eEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhcc---CCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCH
Q psy7093 97 YIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLES---SNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSK 173 (322)
Q Consensus 97 yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~---~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~ 173 (322)
++++...||+-.| ...+++|..++.++...++.+.. ...++.+|||+|||+|.++..++...|+.+++|+|+|+
T Consensus 1 ~~~~~~~fw~~~~---g~~~~~rn~~~~~~~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~ 77 (204)
T TIGR03587 1 MKTEQEQFWAGEF---GKEYIDRNSRQSLVAAKLAMFARALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINE 77 (204)
T ss_pred CcchHHHHhcCcc---cchhhhccccHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCH
Confidence 3566677887776 22367787777665544443321 11133689999999999999999887889999999999
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCC
Q psy7093 174 HACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPP 225 (322)
Q Consensus 174 ~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPP 225 (322)
.+++.|+++.. ++.+.++|+ .++ +..++||+|+++--
T Consensus 78 ~~l~~A~~~~~------~~~~~~~d~-----~~~----~~~~sfD~V~~~~v 114 (204)
T TIGR03587 78 YAVEKAKAYLP------NINIIQGSL-----FDP----FKDNFFDLVLTKGV 114 (204)
T ss_pred HHHHHHHhhCC------CCcEEEeec-----cCC----CCCCCEEEEEECCh
Confidence 99999987642 367788888 442 24678999999744
No 114
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=99.38 E-value=1.2e-11 Score=122.57 Aligned_cols=173 Identities=16% Similarity=0.225 Sum_probs=109.1
Q ss_pred CCcccCchhHHHHHHHHHHhccC-CCCCCeEEEEcCchhHHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHH
Q psy7093 114 PVFIPRSETEELIDIITDKLESS-NHTPTRMIEIGSGTGAITISLLKHFP--------KLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 114 ~~~iprp~te~lv~~i~~~~~~~-~~~~~~iLDlg~GsG~~~~~la~~~~--------~~~v~~vDis~~al~~A~~n~~ 184 (322)
..|+|..-++.+++.+....... .....+|||+|||+|.+.++++..++ ...++|+|+++.++..|+.|+.
T Consensus 5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 45678777777777765443211 00236899999999999999998764 2578999999999999999998
Q ss_pred HcCCCCcEEEEEccCCCcccccccC--cCcCCCCeeEEEEcCCCCCCCCCC-CCC------------------hhhhcc-
Q psy7093 185 MHNVANQLQVFHAEIDSKGQVKNLQ--PDLLEQKFDLVVSNPPYVPSLDIP-KLE------------------PEIALY- 242 (322)
Q Consensus 185 ~~~l~~~i~~~~~D~~~~~~~~~l~--~~~~~~~fDlIv~NPPy~~~~~~~-~l~------------------~~v~~~- 242 (322)
..+. ..+.+.+.|. +.... .....++||+||+||||....... ... ......
T Consensus 85 ~~~~-~~~~i~~~d~-----l~~~~~~~~~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (524)
T TIGR02987 85 EFAL-LEINVINFNS-----LSYVLLNIESYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVL 158 (524)
T ss_pred hcCC-CCceeeeccc-----ccccccccccccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhc
Confidence 7752 2356666665 22110 001235899999999999754211 100 000000
Q ss_pred ---cccccccCCCChhHHHHHH-HHHHhccCccCcEEEEEEcC-----CCHHHHHHHHHHcC
Q psy7093 243 ---EDIKALDGGHDGLNIIKPI-CVFGSNYLKPNGSIFLETNH-----DHLDKIKEWLGICG 295 (322)
Q Consensus 243 ---ep~~al~~g~~gl~~~~~~-l~~~~~~Lk~gG~l~~e~~~-----~~~~~~~~~l~~~~ 295 (322)
.|...+ .|-. ..|..+ ++.+.++|++||.+.+.++. ...+.+++.+-+..
T Consensus 159 ~~~~~~~~~-~g~~--~~y~~~f~~~~~~lL~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~~ 217 (524)
T TIGR02987 159 PYSDPIRKY-AGVG--TEYSRVFEEISLEIANKNGYVSIISPASWLGDKTGENLREYIFNNR 217 (524)
T ss_pred chhhhhccc-CCcc--cHHHHHHHHHHHHhcCCCCEEEEEEChHHhcCccHHHHHHHHHhCC
Confidence 011111 1111 245554 57899999999999987754 34567877776654
No 115
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.37 E-value=2.4e-12 Score=111.87 Aligned_cols=121 Identities=20% Similarity=0.291 Sum_probs=95.7
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.|++..++..+++..+. ++||++||++|+-++++|..+| +.+|+.+|++++..+.|++|+++.|+.++|+++.+
T Consensus 30 ~~~~g~lL~~l~~~~~~-----k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~g 104 (205)
T PF01596_consen 30 SPETGQLLQMLVRLTRP-----KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEG 104 (205)
T ss_dssp HHHHHHHHHHHHHHHT------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES
T ss_pred CHHHHHHHHHHHHhcCC-----ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEe
Confidence 34566666666665543 7999999999999999999887 58999999999999999999999999899999999
Q ss_pred cCCCcccccccCcC---cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 198 EIDSKGQVKNLQPD---LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 198 D~~~~~~~~~l~~~---~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
|+ .+.++.. ...++||+|+.+-.- .-|..+++.+.++|+|||+
T Consensus 105 da-----~~~l~~l~~~~~~~~fD~VFiDa~K-----------------------------~~y~~y~~~~~~ll~~ggv 150 (205)
T PF01596_consen 105 DA-----LEVLPELANDGEEGQFDFVFIDADK-----------------------------RNYLEYFEKALPLLRPGGV 150 (205)
T ss_dssp -H-----HHHHHHHHHTTTTTSEEEEEEESTG-----------------------------GGHHHHHHHHHHHEEEEEE
T ss_pred cc-----HhhHHHHHhccCCCceeEEEEcccc-----------------------------cchhhHHHHHhhhccCCeE
Confidence 98 5544321 123589999996310 1166788888999999999
Q ss_pred EEEE
Q psy7093 275 IFLE 278 (322)
Q Consensus 275 l~~e 278 (322)
+++.
T Consensus 151 ii~D 154 (205)
T PF01596_consen 151 IIAD 154 (205)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 9984
No 116
>PRK04266 fibrillarin; Provisional
Probab=99.37 E-value=2.8e-11 Score=106.94 Aligned_cols=126 Identities=13% Similarity=0.133 Sum_probs=88.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccC-cCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ-PDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~-~~~~~~~fD 218 (322)
+.+|||+|||+|.++..+++..+..+|+|+|+++.+++.+.++++.. .++.++.+|+ ..+.. ..+ .++||
T Consensus 73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~-----~~~~~~~~l-~~~~D 143 (226)
T PRK04266 73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADA-----RKPERYAHV-VEKVD 143 (226)
T ss_pred CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCC-----CCcchhhhc-cccCC
Confidence 37999999999999999999876678999999999999888877653 3488899998 22110 011 24699
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-----CCC-----HHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-----HDH-----LDKIK 288 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-----~~~-----~~~~~ 288 (322)
+|+++.+. | +....+++.+.++|||||.+++.+. ... .+...
T Consensus 144 ~i~~d~~~-----------------p-----------~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~ 195 (226)
T PRK04266 144 VIYQDVAQ-----------------P-----------NQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEI 195 (226)
T ss_pred EEEECCCC-----------------h-----------hHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCHHHHHHHHH
Confidence 99986331 0 0023568899999999999998532 111 12244
Q ss_pred HHHHHcCCCCceeeEEEe
Q psy7093 289 EWLGICGHHMKLKLVENY 306 (322)
Q Consensus 289 ~~l~~~~~~~~~~~v~~~ 306 (322)
++++..| |..++..
T Consensus 196 ~~l~~aG----F~~i~~~ 209 (226)
T PRK04266 196 RKLEEGG----FEILEVV 209 (226)
T ss_pred HHHHHcC----CeEEEEE
Confidence 7777776 6665543
No 117
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.37 E-value=1.2e-11 Score=105.87 Aligned_cols=103 Identities=20% Similarity=0.265 Sum_probs=78.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.++||+|||.|.-++.+|+. +..|+++|+|+.+++.+++-+...+++ ++..+.|+ .+.. ..+.||+
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl-----~~~~----~~~~yD~ 97 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADL-----NDFD----FPEEYDF 97 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BG-----CCBS-----TTTEEE
T ss_pred CCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecc-----hhcc----ccCCcCE
Confidence 489999999999999999999 899999999999999999888888876 89999998 2221 2468999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|++.-. +..++++. ...+++.....++|||++++++
T Consensus 98 I~st~v------~~fL~~~~------------------~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 98 IVSTVV------FMFLQREL------------------RPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp EEEESS------GGGS-GGG------------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEEEE------eccCCHHH------------------HHHHHHHHHhhcCCcEEEEEEE
Confidence 998311 11222322 3578999999999999988865
No 118
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.37 E-value=7.5e-12 Score=108.94 Aligned_cols=119 Identities=20% Similarity=0.362 Sum_probs=99.0
Q ss_pred chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE-c
Q psy7093 120 SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH-A 197 (322)
Q Consensus 120 p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~-~ 197 (322)
|++-.++..++.... +++|||+||+.|+-++.+|..+| +.+++++|++++..+.|++|+++.|+.+++.++. +
T Consensus 45 ~e~g~~L~~L~~~~~-----~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~g 119 (219)
T COG4122 45 PETGALLRLLARLSG-----PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG 119 (219)
T ss_pred hhHHHHHHHHHHhcC-----CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecC
Confidence 677777777766653 27999999999999999999999 7899999999999999999999999999999998 5
Q ss_pred cCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 198 EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 198 D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+ ++.+.. ...++||+|+.+-- . .-|..+++.+.++|+|||++++
T Consensus 120 da-----l~~l~~-~~~~~fDliFIDad------K-----------------------~~yp~~le~~~~lLr~GGliv~ 164 (219)
T COG4122 120 DA-----LDVLSR-LLDGSFDLVFIDAD------K-----------------------ADYPEYLERALPLLRPGGLIVA 164 (219)
T ss_pred cH-----HHHHHh-ccCCCccEEEEeCC------h-----------------------hhCHHHHHHHHHHhCCCcEEEE
Confidence 88 665543 34689999998520 0 1156899999999999999988
Q ss_pred E
Q psy7093 278 E 278 (322)
Q Consensus 278 e 278 (322)
.
T Consensus 165 D 165 (219)
T COG4122 165 D 165 (219)
T ss_pred e
Confidence 4
No 119
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.37 E-value=6.8e-12 Score=108.35 Aligned_cols=127 Identities=24% Similarity=0.351 Sum_probs=89.5
Q ss_pred cCeEEEeCCC--CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 105 RDLTLKMTPP--VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 105 ~~~~~~v~~~--~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
.|..|.++.. .|.||-.+|. ..+.+.+.. +..|+|++||.|.+++.+|+..+...|+++|++|.+++..++|
T Consensus 71 ~G~~f~~D~~kvyfs~rl~~Er--~Ri~~~v~~----~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~N 144 (200)
T PF02475_consen 71 NGIRFKVDLSKVYFSPRLSTER--RRIANLVKP----GEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKEN 144 (200)
T ss_dssp TTEEEEEETTTS---GGGHHHH--HHHHTC--T----T-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHH
T ss_pred CCEEEEEccceEEEccccHHHH--HHHHhcCCc----ceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHH
Confidence 5777877754 3346655554 345544433 3799999999999999999966678999999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
++.+++.+++..+++|. .+.+ ..+.||-|++|.|.... .++
T Consensus 145 i~lNkv~~~i~~~~~D~-----~~~~----~~~~~drvim~lp~~~~------------------------------~fl 185 (200)
T PF02475_consen 145 IRLNKVENRIEVINGDA-----REFL----PEGKFDRVIMNLPESSL------------------------------EFL 185 (200)
T ss_dssp HHHTT-TTTEEEEES-G-----GG-------TT-EEEEEE--TSSGG------------------------------GGH
T ss_pred HHHcCCCCeEEEEcCCH-----HHhc----CccccCEEEECChHHHH------------------------------HHH
Confidence 99999999999999998 3332 26789999999885431 477
Q ss_pred HHHhccCccCcEEE
Q psy7093 263 VFGSNYLKPNGSIF 276 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~ 276 (322)
..+..++++||++-
T Consensus 186 ~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 186 DAALSLLKEGGIIH 199 (200)
T ss_dssp HHHHHHEEEEEEEE
T ss_pred HHHHHHhcCCcEEE
Confidence 77889999999864
No 120
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.36 E-value=2.9e-12 Score=109.23 Aligned_cols=112 Identities=20% Similarity=0.247 Sum_probs=88.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|.|+|||+|..+-.+++++|.+.++|+|.|++|++.|+... . +.+|..+|+ ..+. +...+|+
T Consensus 31 ~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p-~~~f~~aDl------~~w~---p~~~~dl 95 (257)
T COG4106 31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----P-DATFEEADL------RTWK---PEQPTDL 95 (257)
T ss_pred cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----C-CCceecccH------hhcC---CCCccch
Confidence 47899999999999999999999999999999999999986542 3 388999998 2222 4678999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLG 292 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~ 292 (322)
+++|--+..-.+ .-.++.+....|.|||++.+.+..+..+....+++
T Consensus 96 lfaNAvlqWlpd--------------------------H~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr 142 (257)
T COG4106 96 LFANAVLQWLPD--------------------------HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMR 142 (257)
T ss_pred hhhhhhhhhccc--------------------------cHHHHHHHHHhhCCCceEEEECCCccCchhHHHHH
Confidence 999987655333 12678888899999999999998766544444443
No 121
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=1.7e-11 Score=105.24 Aligned_cols=133 Identities=19% Similarity=0.278 Sum_probs=100.4
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
|.+..+.+..+..+-.|. ++..+++.+.... +.+|||||||||+.+..+|+. ..+|+.+|+.+...+.|++|+
T Consensus 42 Y~d~~lpi~~gqtis~P~---~vA~m~~~L~~~~--g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L 114 (209)
T COG2518 42 YEDRALPIGCGQTISAPH---MVARMLQLLELKP--GDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNL 114 (209)
T ss_pred ccCCcccCCCCceecCcH---HHHHHHHHhCCCC--CCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHH
Confidence 345556666777765554 5566677776653 389999999999999999998 459999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH
Q psy7093 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~ 263 (322)
+.+|..| +.+.++|- ...++ ...+||.|+.+--. .. +-+
T Consensus 115 ~~lg~~n-V~v~~gDG-----~~G~~---~~aPyD~I~Vtaaa------~~--------------------------vP~ 153 (209)
T COG2518 115 ETLGYEN-VTVRHGDG-----SKGWP---EEAPYDRIIVTAAA------PE--------------------------VPE 153 (209)
T ss_pred HHcCCCc-eEEEECCc-----ccCCC---CCCCcCEEEEeecc------CC--------------------------CCH
Confidence 9999877 99999998 44443 35799999985211 11 112
Q ss_pred HHhccCccCcEEEEEEcCCCH
Q psy7093 264 FGSNYLKPNGSIFLETNHDHL 284 (322)
Q Consensus 264 ~~~~~Lk~gG~l~~e~~~~~~ 284 (322)
...+.|++||.+++-+|....
T Consensus 154 ~Ll~QL~~gGrlv~PvG~~~~ 174 (209)
T COG2518 154 ALLDQLKPGGRLVIPVGSGPA 174 (209)
T ss_pred HHHHhcccCCEEEEEEccCCc
Confidence 245679999999999984443
No 122
>PLN03075 nicotianamine synthase; Provisional
Probab=99.36 E-value=9.5e-12 Score=113.06 Aligned_cols=111 Identities=17% Similarity=0.253 Sum_probs=84.5
Q ss_pred CCCeEEEEcCchhHH-HH-HHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 139 TPTRMIEIGSGTGAI-TI-SLLKHFPKLKAIAIDQSKHACDLTEQNAVM-HNVANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~-~~-~la~~~~~~~v~~vDis~~al~~A~~n~~~-~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
.+.+|+|+|||.|.+ ++ .++..+|+.+++++|+|+++++.|++++.. .++.++++|..+|+ .+... ..+
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da-----~~~~~---~l~ 194 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADV-----MDVTE---SLK 194 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECch-----hhccc---ccC
Confidence 348999999997744 33 334567899999999999999999999964 78888999999999 44221 246
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
+||+|+++ -.+.... + -+.++++++.+.|+|||++++-.+.+
T Consensus 195 ~FDlVF~~-ALi~~dk------~------------------~k~~vL~~l~~~LkPGG~Lvlr~~~G 236 (296)
T PLN03075 195 EYDVVFLA-ALVGMDK------E------------------EKVKVIEHLGKHMAPGALLMLRSAHG 236 (296)
T ss_pred CcCEEEEe-ccccccc------c------------------cHHHHHHHHHHhcCCCcEEEEecccc
Confidence 89999997 3222110 0 15689999999999999999977543
No 123
>KOG1540|consensus
Probab=99.36 E-value=2.5e-11 Score=106.01 Aligned_cols=128 Identities=19% Similarity=0.269 Sum_probs=94.5
Q ss_pred HHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC------CEEEEEeCCHHHHHHHHHHHHHcCCCC--cEEEEEccCC
Q psy7093 129 ITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK------LKAIAIDQSKHACDLTEQNAVMHNVAN--QLQVFHAEID 200 (322)
Q Consensus 129 i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~------~~v~~vDis~~al~~A~~n~~~~~l~~--~i~~~~~D~~ 200 (322)
.+..+... +..++||+|||||-++.-+.+..+. .+|+..|+|+++|..+++.+++.++.. ++.++.+|+
T Consensus 92 ~v~~L~p~--~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dA- 168 (296)
T KOG1540|consen 92 FVSKLGPG--KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDA- 168 (296)
T ss_pred hhhccCCC--CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCc-
Confidence 33444443 3379999999999999999998766 899999999999999999997777654 489999998
Q ss_pred CcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE-EEE
Q psy7093 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF-LET 279 (322)
Q Consensus 201 ~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~-~e~ 279 (322)
+.++ ++...||...+---.-... ...+.++++.|+|||||.+. +|.
T Consensus 169 -----E~Lp--Fdd~s~D~yTiafGIRN~t--------------------------h~~k~l~EAYRVLKpGGrf~cLeF 215 (296)
T KOG1540|consen 169 -----EDLP--FDDDSFDAYTIAFGIRNVT--------------------------HIQKALREAYRVLKPGGRFSCLEF 215 (296)
T ss_pred -----ccCC--CCCCcceeEEEecceecCC--------------------------CHHHHHHHHHHhcCCCcEEEEEEc
Confidence 5665 5788999887621111111 14689999999999999864 455
Q ss_pred cCCCHHHHHHHHH
Q psy7093 280 NHDHLDKIKEWLG 292 (322)
Q Consensus 280 ~~~~~~~~~~~l~ 292 (322)
.....+.+..+..
T Consensus 216 skv~~~~l~~fy~ 228 (296)
T KOG1540|consen 216 SKVENEPLKWFYD 228 (296)
T ss_pred cccccHHHHHHHH
Confidence 5444444544443
No 124
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=99.36 E-value=1.2e-11 Score=114.98 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=104.4
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC--------------------------------C-
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK--------------------------------L- 164 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~--------------------------------~- 164 (322)
|.|-.|.+...++........ ..++|+-||||.+.+..|..-++ +
T Consensus 172 ~ApLketLAaAil~lagw~~~--~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~ 249 (381)
T COG0116 172 PAPLKETLAAAILLLAGWKPD--EPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERAR 249 (381)
T ss_pred CCCchHHHHHHHHHHcCCCCC--CccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHh
Confidence 557788888888877665543 68999999999999999876431 1
Q ss_pred ------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChh
Q psy7093 165 ------KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPE 238 (322)
Q Consensus 165 ------~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~ 238 (322)
.++|+|+++.+++.|+.|+...|+.+.|+|.++|+ ..+...+ ..+|+|||||||...-.-. ..
T Consensus 250 ~~~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~------~~l~~~~--~~~gvvI~NPPYGeRlg~~---~~ 318 (381)
T COG0116 250 RGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADA------TDLKEPL--EEYGVVISNPPYGERLGSE---AL 318 (381)
T ss_pred hcCccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcch------hhCCCCC--CcCCEEEeCCCcchhcCCh---hh
Confidence 37899999999999999999999999999999998 3443211 6899999999997432211 00
Q ss_pred hhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 239 IALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 239 v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
--.+|+.+.+.+.+.++--+..+| +++.
T Consensus 319 ---------------v~~LY~~fg~~lk~~~~~ws~~v~-tt~e 346 (381)
T COG0116 319 ---------------VAKLYREFGRTLKRLLAGWSRYVF-TTSE 346 (381)
T ss_pred ---------------HHHHHHHHHHHHHHHhcCCceEEE-EccH
Confidence 113689999999999988888777 4443
No 125
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.35 E-value=3.2e-11 Score=111.44 Aligned_cols=109 Identities=17% Similarity=0.096 Sum_probs=84.1
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccC-CCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESS-NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~-~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
+|+....++...+.+++.++..++.+++.+... ..++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|
T Consensus 108 iy~~~d~v~~~~l~~~~~~~~~v~~~l~~l~~~~~~~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~ 185 (315)
T PLN02585 108 IYGETDEVNKVQLDIRLGHAQTVEKVLLWLAEDGSLAGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERR 185 (315)
T ss_pred hcCCccccCceeeecccChHHHHHHHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHH
Confidence 456656666667778888888888888887643 113479999999999999999987 67999999999999999999
Q ss_pred HHHcCC----CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCC
Q psy7093 183 AVMHNV----ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPP 225 (322)
Q Consensus 183 ~~~~~l----~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPP 225 (322)
+...+. ..++.+...|+ . .+ .++||+|+|.-.
T Consensus 186 ~~~~~~~~~~~~~~~f~~~Dl-----~-~l-----~~~fD~Vv~~~v 221 (315)
T PLN02585 186 AKEALAALPPEVLPKFEANDL-----E-SL-----SGKYDTVTCLDV 221 (315)
T ss_pred HHhcccccccccceEEEEcch-----h-hc-----CCCcCEEEEcCE
Confidence 876521 13478888887 2 21 468999998643
No 126
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.34 E-value=1.5e-11 Score=108.91 Aligned_cols=101 Identities=32% Similarity=0.437 Sum_probs=80.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++...+..+++++|+++.+++.++.+.. .++.++.+|+ .+ .+ +..++||+
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~-----~~-~~--~~~~~fD~ 101 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDA-----EK-LP--LEDSSFDL 101 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecch-----hh-CC--CCCCceeE
Confidence 368999999999999999999888899999999999999887653 2588899998 22 22 24568999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|+++-......+ ...++..+.++|+|||.+++..
T Consensus 102 vi~~~~l~~~~~--------------------------~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 102 IVSNLALQWCDD--------------------------LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred EEEhhhhhhccC--------------------------HHHHHHHHHHHcCCCcEEEEEe
Confidence 999765443222 3478999999999999998864
No 127
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.33 E-value=2.2e-11 Score=124.34 Aligned_cols=106 Identities=22% Similarity=0.211 Sum_probs=81.9
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC------------------------------------
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF------------------------------------ 161 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~------------------------------------ 161 (322)
|.|-.|.+...++....... .+..++|++||||.+.+..|...
T Consensus 170 ~Apl~etlAaa~l~~a~w~~-~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~ 248 (702)
T PRK11783 170 EAPLKENLAAAILLRSGWPQ-EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERA 248 (702)
T ss_pred CCCCcHHHHHHHHHHcCCCC-CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHH
Confidence 56778888888887654311 23789999999999999887631
Q ss_pred ------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCC
Q psy7093 162 ------PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 162 ------~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~ 230 (322)
...+++|+|+++.+++.|++|+..+|+.+++++.++|+ .+ ++.....++||+||+||||...-
T Consensus 249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~-----~~-~~~~~~~~~~d~IvtNPPYg~r~ 317 (702)
T PRK11783 249 RAGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDV-----AD-LKNPLPKGPTGLVISNPPYGERL 317 (702)
T ss_pred hhcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCCh-----hh-cccccccCCCCEEEECCCCcCcc
Confidence 11369999999999999999999999988899999998 33 22111235799999999998643
No 128
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.33 E-value=4.3e-13 Score=103.00 Aligned_cols=99 Identities=22% Similarity=0.322 Sum_probs=62.5
Q ss_pred EEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEc
Q psy7093 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223 (322)
Q Consensus 144 LDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~N 223 (322)
||+|||+|.++..++..+|..+++++|+|+.+++.|+++.......+ ......+. .+... ....++||+|+++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~-~~~~~~~~-----~~~~~-~~~~~~fD~V~~~ 73 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN-FERLRFDV-----LDLFD-YDPPESFDLVVAS 73 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--S-----SS----CCC----SEEEEE
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc-eeEEEeec-----CChhh-cccccccceehhh
Confidence 79999999999999999999999999999999998988887766432 33444333 11111 1123589999996
Q ss_pred CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 224 PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 224 PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
-..+...+ .+.+++++.++|+|||++
T Consensus 74 ~vl~~l~~--------------------------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 74 NVLHHLED--------------------------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -TTS--S---------------------------HHHHHHHHTTT-TSS-EE
T ss_pred hhHhhhhh--------------------------HHHHHHHHHHHcCCCCCC
Confidence 44333211 458999999999999986
No 129
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=2.5e-11 Score=106.50 Aligned_cols=118 Identities=19% Similarity=0.294 Sum_probs=97.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++.+|+|.|+|||.++..+|... |..+|+.+|+.++.++.|++|++..++.+++++..+|+ .+.. ....|
T Consensus 94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv-----~~~~----~~~~v 164 (256)
T COG2519 94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDV-----REGI----DEEDV 164 (256)
T ss_pred CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccc-----cccc----ccccc
Confidence 44899999999999999999754 55899999999999999999999999998899999999 3332 23489
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-CCCHHHHHHHHHHcCC
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-HDHLDKIKEWLGICGH 296 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-~~~~~~~~~~l~~~~~ 296 (322)
|.|+.+.|=. -.+++.+.+.|+|||.+++-.+ -+|.+.+.+.+++.|+
T Consensus 165 Dav~LDmp~P-------------------------------W~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~ 213 (256)
T COG2519 165 DAVFLDLPDP-------------------------------WNVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGF 213 (256)
T ss_pred CEEEEcCCCh-------------------------------HHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 9999986521 1688999999999999888665 3677777777888764
No 130
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.30 E-value=6.8e-11 Score=105.28 Aligned_cols=137 Identities=23% Similarity=0.345 Sum_probs=99.1
Q ss_pred HHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 128 IITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 128 ~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
.++..+.-. ++.+|+|.|+|||.++.++++.. |..+|+..|+.++..+.|++|++.+++.+++++.+.|+...+.
T Consensus 31 ~I~~~l~i~--pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~-- 106 (247)
T PF08704_consen 31 YILMRLDIR--PGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGF-- 106 (247)
T ss_dssp HHHHHTT----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG----
T ss_pred HHHHHcCCC--CCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccc--
Confidence 344444444 34899999999999999999764 6789999999999999999999999998889999999932111
Q ss_pred ccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccC-ccCcEEEEEEc-CCCH
Q psy7093 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL-KPNGSIFLETN-HDHL 284 (322)
Q Consensus 207 ~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~L-k~gG~l~~e~~-~~~~ 284 (322)
... .+..+|.|+.+.|- |. ..+..+.+.| ++||.+++=.+ -.|-
T Consensus 107 --~~~-~~~~~DavfLDlp~-----------------Pw--------------~~i~~~~~~L~~~gG~i~~fsP~ieQv 152 (247)
T PF08704_consen 107 --DEE-LESDFDAVFLDLPD-----------------PW--------------EAIPHAKRALKKPGGRICCFSPCIEQV 152 (247)
T ss_dssp --STT--TTSEEEEEEESSS-----------------GG--------------GGHHHHHHHE-EEEEEEEEEESSHHHH
T ss_pred --ccc-ccCcccEEEEeCCC-----------------HH--------------HHHHHHHHHHhcCCceEEEECCCHHHH
Confidence 111 13679999998763 22 3567788889 89999877554 3677
Q ss_pred HHHHHHHHHcCCCCceeeEEEe
Q psy7093 285 DKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 285 ~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
+...+.|++.| |..++++
T Consensus 153 ~~~~~~L~~~g----f~~i~~~ 170 (247)
T PF08704_consen 153 QKTVEALREHG----FTDIETV 170 (247)
T ss_dssp HHHHHHHHHTT----EEEEEEE
T ss_pred HHHHHHHHHCC----CeeeEEE
Confidence 77788888875 6666543
No 131
>KOG2187|consensus
Probab=99.30 E-value=3.9e-11 Score=114.19 Aligned_cols=147 Identities=21% Similarity=0.333 Sum_probs=108.5
Q ss_pred cCCCCCHHHHHHHHHHHHHHHc-------------------------CCCceeEecc----eeecCeEEEeCCCCcc--c
Q psy7093 70 KNTELTNDQITHLNKLCECRLA-------------------------RMPVQYIIKE----WNFRDLTLKMTPPVFI--P 118 (322)
Q Consensus 70 ~~~~l~~~~~~~~~~~~~rr~~-------------------------~~p~~yi~g~----~~f~~~~~~v~~~~~i--p 118 (322)
....++.++...+++.++.|.. +.|++++-|+ ..+.|++|.++|+.|+ .
T Consensus 285 ~~~~l~~e~l~e~~~ki~~~f~~~~~~a~~l~~l~~q~~~~ts~~~~~~~~~l~~~~~~I~E~l~~ltF~iSp~AFFQ~N 364 (534)
T KOG2187|consen 285 HPCKLATEELTELKKKIEQRFLSGPGFASGLRVLYLQESGHTSDGQEGKPLQLVGGDPYITESLLGLTFRISPGAFFQTN 364 (534)
T ss_pred EeecccHHHHHHHHHHHHHHHhcccccccceeEEEEecccccccCCCCCCeEEEccccEEEeecCCeEEEECCchhhccC
Confidence 3455666666666665555442 2455665554 3578999999999998 4
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
.+..|.+...+-++...... +.++|+|||||.+++++|+. ..+|+|+|+++++++-|++|++.+|++| .+|+++-
T Consensus 365 t~~aevLys~i~e~~~l~~~--k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gq 439 (534)
T KOG2187|consen 365 TSAAEVLYSTIGEWAGLPAD--KTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQ 439 (534)
T ss_pred cHHHHHHHHHHHHHhCCCCC--cEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccc-eeeeecc
Confidence 56777777888887766543 78999999999999999988 6789999999999999999999999886 9999995
Q ss_pred CCCcccccccCcCcC--CCCee-EEEEcCCC
Q psy7093 199 IDSKGQVKNLQPDLL--EQKFD-LVVSNPPY 226 (322)
Q Consensus 199 ~~~~~~~~~l~~~~~--~~~fD-lIv~NPPy 226 (322)
+ .+.++..+. .+.-+ ++|.|||-
T Consensus 440 a-----E~~~~sl~~~~~~~~~~v~iiDPpR 465 (534)
T KOG2187|consen 440 A-----EDLFPSLLTPCCDSETLVAIIDPPR 465 (534)
T ss_pred h-----hhccchhcccCCCCCceEEEECCCc
Confidence 4 222222111 12334 77889985
No 132
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.30 E-value=2.7e-11 Score=105.65 Aligned_cols=132 Identities=16% Similarity=0.241 Sum_probs=93.7
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n 182 (322)
|.+..+.++.+..+..| .++..+++.+.-. ++.+|||+|||||+.+..++.... ...|+++|+++..++.|++|
T Consensus 42 Y~d~~l~i~~~~~is~P---~~~a~~l~~L~l~--pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~ 116 (209)
T PF01135_consen 42 YEDRPLPIGCGQTISAP---SMVARMLEALDLK--PGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRN 116 (209)
T ss_dssp TSSS-EEEETTEEE--H---HHHHHHHHHTTC---TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHH
T ss_pred CCCCCeeecceeechHH---HHHHHHHHHHhcC--CCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHH
Confidence 44566666666666444 4566777777655 348999999999999999998754 34799999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
+..++.. ++.++++|. ...++ ...+||.|+++.... .+-
T Consensus 117 l~~~~~~-nv~~~~gdg-----~~g~~---~~apfD~I~v~~a~~--------------------------------~ip 155 (209)
T PF01135_consen 117 LARLGID-NVEVVVGDG-----SEGWP---EEAPFDRIIVTAAVP--------------------------------EIP 155 (209)
T ss_dssp HHHHTTH-SEEEEES-G-----GGTTG---GG-SEEEEEESSBBS--------------------------------S--
T ss_pred HHHhccC-ceeEEEcch-----hhccc---cCCCcCEEEEeeccc--------------------------------hHH
Confidence 9999876 599999998 44443 356899999975331 122
Q ss_pred HHHhccCccCcEEEEEEcC
Q psy7093 263 VFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e~~~ 281 (322)
....+.|++||.|++-++.
T Consensus 156 ~~l~~qL~~gGrLV~pi~~ 174 (209)
T PF01135_consen 156 EALLEQLKPGGRLVAPIGQ 174 (209)
T ss_dssp HHHHHTEEEEEEEEEEESS
T ss_pred HHHHHhcCCCcEEEEEEcc
Confidence 2355679999999998875
No 133
>PRK03612 spermidine synthase; Provisional
Probab=99.28 E-value=7.7e-11 Score=116.47 Aligned_cols=127 Identities=20% Similarity=0.337 Sum_probs=89.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHH--c---CC-CCcEEEEEccCCCcccccccCcCc
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVM--H---NV-ANQLQVFHAEIDSKGQVKNLQPDL 212 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~--~---~l-~~~i~~~~~D~~~~~~~~~l~~~~ 212 (322)
+++|||+|||+|..+..+++. +. .+|+++|+|+++++.|++|... . .+ .++++++.+|. .+.+..
T Consensus 298 ~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da-----~~~l~~-- 369 (521)
T PRK03612 298 PRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDA-----FNWLRK-- 369 (521)
T ss_pred CCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChH-----HHHHHh--
Confidence 479999999999999999875 54 7999999999999999985321 1 12 35799999998 544432
Q ss_pred CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHH---HH
Q psy7093 213 LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLD---KI 287 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~---~~ 287 (322)
..++||+|++|+|......... + +.+.+++.+.+.|+|||.+++..+. .+.+ .+
T Consensus 370 ~~~~fDvIi~D~~~~~~~~~~~-------------L--------~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i 428 (521)
T PRK03612 370 LAEKFDVIIVDLPDPSNPALGK-------------L--------YSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSI 428 (521)
T ss_pred CCCCCCEEEEeCCCCCCcchhc-------------c--------chHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHH
Confidence 2468999999987543211000 0 1346888899999999999987642 2233 34
Q ss_pred HHHHHHcC
Q psy7093 288 KEWLGICG 295 (322)
Q Consensus 288 ~~~l~~~~ 295 (322)
.+.+++.|
T Consensus 429 ~~~l~~~g 436 (521)
T PRK03612 429 EATLEAAG 436 (521)
T ss_pred HHHHHHcC
Confidence 44555553
No 134
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.28 E-value=5.6e-11 Score=104.13 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=75.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCcEEEEEccCCCcccccccC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH-----------NVANQLQVFHAEIDSKGQVKNLQ 209 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~-----------~l~~~i~~~~~D~~~~~~~~~l~ 209 (322)
.+|||+|||.|.-++.+|.+ +..|+|+|+|+.|++.+....... .-..+++++++|+ ++...
T Consensus 36 ~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~-----~~~~~ 108 (213)
T TIGR03840 36 ARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDF-----FALTA 108 (213)
T ss_pred CeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccC-----CCCCc
Confidence 69999999999999999987 899999999999999864321100 0023589999999 44321
Q ss_pred cCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 210 PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 210 ~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
. ..++||.|+-.--++ .++++. -..+++.+.++|+|||.+++++
T Consensus 109 ~--~~~~fD~i~D~~~~~------~l~~~~------------------R~~~~~~l~~lLkpgG~~ll~~ 152 (213)
T TIGR03840 109 A--DLGPVDAVYDRAALI------ALPEEM------------------RQRYAAHLLALLPPGARQLLIT 152 (213)
T ss_pred c--cCCCcCEEEechhhc------cCCHHH------------------HHHHHHHHHHHcCCCCeEEEEE
Confidence 0 135789888643322 333433 3478999999999999866653
No 135
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.28 E-value=1.5e-10 Score=101.85 Aligned_cols=89 Identities=24% Similarity=0.350 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 122 te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
.+.+.+.+++.+.....++.+|||+|||+|.++..++.. +.+|+|+|+|+.++..|++++...+..+++.+.++|+
T Consensus 38 ~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-- 113 (219)
T TIGR02021 38 RAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDL-- 113 (219)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCh--
Confidence 345556666666521113479999999999999999886 5799999999999999999998777656799999998
Q ss_pred cccccccCcCcCCCCeeEEEEc
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSN 223 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~N 223 (322)
.. + . ++||+|++.
T Consensus 114 ---~~-~----~-~~fD~ii~~ 126 (219)
T TIGR02021 114 ---LS-L----C-GEFDIVVCM 126 (219)
T ss_pred ---hh-C----C-CCcCEEEEh
Confidence 22 1 2 689999984
No 136
>KOG1270|consensus
Probab=99.28 E-value=4.6e-12 Score=111.15 Aligned_cols=100 Identities=25% Similarity=0.414 Sum_probs=76.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEEccCCCcccccccCcCcCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN-----QLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~-----~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
.+|||+|||+|.++..||+. +++|+|+|+++++++.|++.....-..+ ++++.+.|+ +.+ .+
T Consensus 91 ~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~------E~~-----~~ 157 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDV------EGL-----TG 157 (282)
T ss_pred ceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcch------hhc-----cc
Confidence 67999999999999999999 7999999999999999999954432222 366777776 222 35
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+||.|+|---+....+ .+.++..+.++|||||.+++.+
T Consensus 158 ~fDaVvcsevleHV~d--------------------------p~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 158 KFDAVVCSEVLEHVKD--------------------------PQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred ccceeeeHHHHHHHhC--------------------------HHHHHHHHHHHhCCCCceEeee
Confidence 6999999322211111 3578999999999999999965
No 137
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.28 E-value=3e-10 Score=96.51 Aligned_cols=138 Identities=20% Similarity=0.243 Sum_probs=91.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.++||+|||.|.++..||.+ ..+++++|+|+.|++.|++..... + +|++++.|+ -+. .+.++||+|
T Consensus 45 ~~alEvGCs~G~lT~~LA~r--Cd~LlavDis~~Al~~Ar~Rl~~~--~-~V~~~~~dv-----p~~----~P~~~FDLI 110 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPR--CDRLLAVDISPRALARARERLAGL--P-HVEWIQADV-----PEF----WPEGRFDLI 110 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGG--EEEEEEEES-HHHHHHHHHHTTT---S-SEEEEES-T-----TT-------SS-EEEE
T ss_pred ceeEecCCCccHHHHHHHHh--hCceEEEeCCHHHHHHHHHhcCCC--C-CeEEEECcC-----CCC----CCCCCeeEE
Confidence 68999999999999999999 468999999999999999887643 3 599999998 332 367899999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-------C---CHHHHHHH
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-------D---HLDKIKEW 290 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-------~---~~~~~~~~ 290 (322)
|.- ||..|=. ..+-.+.++..+...|+|||.+++.+-. . ..+.+.++
T Consensus 111 V~S--------------EVlYYL~---------~~~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wgh~~ga~tv~~~ 167 (201)
T PF05401_consen 111 VLS--------------EVLYYLD---------DAEDLRAALDRLVAALAPGGHLVFGHARDANCRRWGHAAGAETVLEM 167 (201)
T ss_dssp EEE--------------S-GGGSS---------SHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT-S--HHHHHHH
T ss_pred EEe--------------hHhHcCC---------CHHHHHHHHHHHHHHhCCCCEEEEEEecCCcccccCcccchHHHHHH
Confidence 882 2222211 1123568899999999999999997622 1 25678888
Q ss_pred HHHcCCCCceeeEEEecCCCCCCeEEE
Q psy7093 291 LGICGHHMKLKLVENYKDFNNKDRFVE 317 (322)
Q Consensus 291 l~~~~~~~~~~~v~~~~D~~g~~R~~~ 317 (322)
+.+.-. -...+++.-...+-|.++.
T Consensus 168 ~~~~~~--~~~~~~~~~~~~~~~~~~~ 192 (201)
T PF05401_consen 168 LQEHLT--EVERVECRGGSPNEDCLLA 192 (201)
T ss_dssp HHHHSE--EEEEEEEE-SSTTSEEEEE
T ss_pred HHHHhh--heeEEEEcCCCCCCceEee
Confidence 887631 1334445554555444443
No 138
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.27 E-value=2.5e-10 Score=103.79 Aligned_cols=150 Identities=17% Similarity=0.202 Sum_probs=99.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN--V-ANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~--l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+||++|||+|.++..+++..+..+++++|+++.+++.|++++...+ + ..+++++.+|. .+.+.. ..++
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~-----~~~l~~--~~~~ 145 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDG-----FKFLAD--TENT 145 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECch-----HHHHHh--CCCC
Confidence 469999999999999999887656799999999999999999875542 1 24688888887 444332 2468
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHHHHHHHHHHc
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLDKIKEWLGIC 294 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l~~~ 294 (322)
||+||+|++...... . .| +...+++.+.+.|+|||.+++..+. .+...+..+.+.-
T Consensus 146 yDvIi~D~~~~~~~~-~-------------~l--------~~~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~tl 203 (270)
T TIGR00417 146 FDVIIVDSTDPVGPA-E-------------TL--------FTKEFYELLKKALNEDGIFVAQSESPWIQLELITDLKRDV 203 (270)
T ss_pred ccEEEEeCCCCCCcc-c-------------ch--------hHHHHHHHHHHHhCCCcEEEEcCCCcccCHHHHHHHHHHH
Confidence 999999987432111 0 00 1357888899999999999986543 2244444433322
Q ss_pred CCCCceeeEEEecC-----CCCCCeEEEEEE
Q psy7093 295 GHHMKLKLVENYKD-----FNNKDRFVELKL 320 (322)
Q Consensus 295 ~~~~~~~~v~~~~D-----~~g~~R~~~~~~ 320 (322)
.. .|..+..+.- ..|..-|+++.+
T Consensus 204 ~~--~F~~v~~~~~~vp~~~~g~~~~~~as~ 232 (270)
T TIGR00417 204 KE--AFPITEYYTANIPTYPSGLWTFTIGSK 232 (270)
T ss_pred HH--HCCCeEEEEEEcCccccchhEEEEEEC
Confidence 11 1444443322 125556666654
No 139
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.26 E-value=6.4e-11 Score=89.63 Aligned_cols=103 Identities=24% Similarity=0.430 Sum_probs=80.4
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEE
Q psy7093 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv 221 (322)
+++|+|||+|.++..++. .+..+++++|+++.++..++++....+ ..++++...|+ .+... ...++||+|+
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~--~~~~~~d~i~ 71 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALL-ADNVEVLKGDA-----EELPP--EADESFDVII 71 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhccc-ccceEEEEcCh-----hhhcc--ccCCceEEEE
Confidence 489999999999999988 467899999999999999986443333 34689999998 33321 1356899999
Q ss_pred EcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 222 SNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 222 ~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+|+|+.... .....+++.+.+.|+|||.+++.
T Consensus 72 ~~~~~~~~~-------------------------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 72 SDPPLHHLV-------------------------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred Eccceeehh-------------------------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 999976520 12568899999999999999875
No 140
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.26 E-value=5.5e-11 Score=111.96 Aligned_cols=115 Identities=23% Similarity=0.447 Sum_probs=77.9
Q ss_pred CeEEEeCCCCcc--cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 106 DLTLKMTPPVFI--PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 106 ~~~~~v~~~~~i--prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
+..|.++|+.|+ ....++.+++.+++++.... ..+||++||+|.+++.+|.. ..+|+|+|+++.+++.|++|+
T Consensus 164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~---~~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na 238 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSK---GDVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENA 238 (352)
T ss_dssp TEEEEEETTS---SBHHHHHHHHHHHHHHCTT-T---TEEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHH
T ss_pred ceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCC---CcEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHH
Confidence 467889999997 45667888899988887642 47999999999999999998 578999999999999999999
Q ss_pred HHcCCCCcEEEEEccCCCcc-------cccccCc-CcCCCCeeEEEEcCCC
Q psy7093 184 VMHNVANQLQVFHAEIDSKG-------QVKNLQP-DLLEQKFDLVVSNPPY 226 (322)
Q Consensus 184 ~~~~l~~~i~~~~~D~~~~~-------~~~~l~~-~~~~~~fDlIv~NPPy 226 (322)
+.+++.+ ++|+++++.+-. .+..+.. .+....+|+|+.|||=
T Consensus 239 ~~N~i~n-~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~d~vilDPPR 288 (352)
T PF05958_consen 239 KLNGIDN-VEFIRGDAEDFAKALAKAREFNRLKGIDLKSFKFDAVILDPPR 288 (352)
T ss_dssp HHTT--S-EEEEE--SHHCCCHHCCS-GGTTGGGS-GGCTTESEEEE---T
T ss_pred HHcCCCc-ceEEEeeccchhHHHHhhHHHHhhhhhhhhhcCCCEEEEcCCC
Confidence 9999875 999988761100 0000000 0122368999999994
No 141
>PRK05785 hypothetical protein; Provisional
Probab=99.26 E-value=1.4e-10 Score=102.67 Aligned_cols=98 Identities=15% Similarity=0.256 Sum_probs=74.2
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||||.++..+++.. +.+|+|+|+|+++++.|+++ ..++++|+ ..++ +++++||+|
T Consensus 53 ~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~------~~lp--~~d~sfD~v 114 (226)
T PRK05785 53 KKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA---------DDKVVGSF------EALP--FRDKSFDVV 114 (226)
T ss_pred CeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc---------cceEEech------hhCC--CCCCCEEEE
Confidence 799999999999999999886 57999999999999999753 12467777 3333 357899999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
+++.......+ ....++++.++||| +..++|++...
T Consensus 115 ~~~~~l~~~~d--------------------------~~~~l~e~~RvLkp-~~~ile~~~p~ 150 (226)
T PRK05785 115 MSSFALHASDN--------------------------IEKVIAEFTRVSRK-QVGFIAMGKPD 150 (226)
T ss_pred EecChhhccCC--------------------------HHHHHHHHHHHhcC-ceEEEEeCCCC
Confidence 99754432221 34789999999999 45567776543
No 142
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.25 E-value=2.8e-11 Score=109.55 Aligned_cols=110 Identities=17% Similarity=0.290 Sum_probs=77.8
Q ss_pred CCeEEEEcCchhH----HHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHHHH----cC-------------------
Q psy7093 140 PTRMIEIGSGTGA----ITISLLKHFP-----KLKAIAIDQSKHACDLTEQNAVM----HN------------------- 187 (322)
Q Consensus 140 ~~~iLDlg~GsG~----~~~~la~~~~-----~~~v~~vDis~~al~~A~~n~~~----~~------------------- 187 (322)
+.+|+|+|||||. +++.++...+ +.+|+|+|+|+.+++.|++.+.. .+
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 4799999999995 5666666544 47899999999999999986421 01
Q ss_pred ---CCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHH
Q psy7093 188 ---VANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVF 264 (322)
Q Consensus 188 ---l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~ 264 (322)
+.++++|.+.|+ .+.. .+.++||+|+|.--++ .++++. ..++++.
T Consensus 180 ~~~ir~~V~F~~~dl-----~~~~---~~~~~fD~I~crnvl~------yf~~~~------------------~~~~l~~ 227 (264)
T smart00138 180 KPELKERVRFAKHNL-----LAES---PPLGDFDLIFCRNVLI------YFDEPT------------------QRKLLNR 227 (264)
T ss_pred ChHHhCcCEEeeccC-----CCCC---CccCCCCEEEechhHH------hCCHHH------------------HHHHHHH
Confidence 123688999998 4322 2357899999942221 111111 3479999
Q ss_pred HhccCccCcEEEEEEcC
Q psy7093 265 GSNYLKPNGSIFLETNH 281 (322)
Q Consensus 265 ~~~~Lk~gG~l~~e~~~ 281 (322)
+.+.|+|||++++....
T Consensus 228 l~~~L~pGG~L~lg~~E 244 (264)
T smart00138 228 FAEALKPGGYLFLGHSE 244 (264)
T ss_pred HHHHhCCCeEEEEECcc
Confidence 99999999999985443
No 143
>PRK01581 speE spermidine synthase; Validated
Probab=99.25 E-value=6.6e-10 Score=103.38 Aligned_cols=183 Identities=14% Similarity=0.166 Sum_probs=110.2
Q ss_pred EEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH--H-
Q psy7093 108 TLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA--V- 184 (322)
Q Consensus 108 ~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~--~- 184 (322)
.+..+....+-..+-..+.+.+....-.....+.+||++|||+|..+..+++..+..+|++||+++.+++.|++.- .
T Consensus 119 ~L~LDG~~Q~se~DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~ 198 (374)
T PRK01581 119 RLYLDKQLQFSSVDEQIYHEALVHPIMSKVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVS 198 (374)
T ss_pred EEEECCeeccccccHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccch
Confidence 4555554444333333344544442211112347999999999999888888755679999999999999999631 1
Q ss_pred --HcCC-CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 185 --MHNV-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 185 --~~~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
...+ .+|++++.+|. .+.+.. ..++||+|++|+|-...... ..| +-..+
T Consensus 199 ~~~~~~~DpRV~vvi~Da-----~~fL~~--~~~~YDVIIvDl~DP~~~~~-------------~~L--------yT~EF 250 (374)
T PRK01581 199 LNKSAFFDNRVNVHVCDA-----KEFLSS--PSSLYDVIIIDFPDPATELL-------------STL--------YTSEL 250 (374)
T ss_pred hccccCCCCceEEEECcH-----HHHHHh--cCCCccEEEEcCCCccccch-------------hhh--------hHHHH
Confidence 1112 46899999998 554432 34689999999763221100 001 12578
Q ss_pred HHHHhccCccCcEEEEEEcCCC--H---HHHHHHHHHcCCCCceeeEE-EecCCCCCCeEEEEEE
Q psy7093 262 CVFGSNYLKPNGSIFLETNHDH--L---DKIKEWLGICGHHMKLKLVE-NYKDFNNKDRFVELKL 320 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e~~~~~--~---~~~~~~l~~~~~~~~~~~v~-~~~D~~g~~R~~~~~~ 320 (322)
++.+.+.|+|||++++..+... . ..+.+.+++.+.. -.... ...-+.+..-|+++.+
T Consensus 251 y~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~--v~~y~t~vPsyg~~WgF~~as~ 313 (374)
T PRK01581 251 FARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLT--VKSYHTIVPSFGTDWGFHIAAN 313 (374)
T ss_pred HHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCc--eEEEEEecCCCCCceEEEEEeC
Confidence 8899999999999887644221 1 2245566666531 11111 2223333366666654
No 144
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.24 E-value=1.9e-10 Score=106.67 Aligned_cols=115 Identities=14% Similarity=0.226 Sum_probs=85.5
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
.++..+++.+...+ +.+|||+|||+|.++..+++..+. ..|+++|+++.+++.|++|++.++.. ++.++++|.
T Consensus 67 ~l~a~ll~~L~i~~--g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~-nV~~i~gD~--- 140 (322)
T PRK13943 67 SLMALFMEWVGLDK--GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIE-NVIFVCGDG--- 140 (322)
T ss_pred HHHHHHHHhcCCCC--CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCh---
Confidence 35555666554432 379999999999999999988653 47999999999999999999998875 599999998
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
.+..+ ..++||+|+++... ..+...+.+.|+|||.+++.++.
T Consensus 141 --~~~~~---~~~~fD~Ii~~~g~--------------------------------~~ip~~~~~~LkpgG~Lvv~~~~ 182 (322)
T PRK13943 141 --YYGVP---EFAPYDVIFVTVGV--------------------------------DEVPETWFTQLKEGGRVIVPINL 182 (322)
T ss_pred --hhccc---ccCCccEEEECCch--------------------------------HHhHHHHHHhcCCCCEEEEEeCC
Confidence 43332 23579999985210 12233456789999999887643
No 145
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.24 E-value=3.8e-10 Score=100.18 Aligned_cols=117 Identities=17% Similarity=0.268 Sum_probs=85.8
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
..++.+....... ++.+|||+|||+|.++..+++. +.+++++|+++.+++.|++++...+. ++.+...|+
T Consensus 35 ~~~~~l~~~~~~~--~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~---- 104 (233)
T PRK05134 35 LRLNYIREHAGGL--FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGL--KIDYRQTTA---- 104 (233)
T ss_pred HHHHHHHHhccCC--CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCH----
Confidence 3345555554433 3478999999999999998886 57899999999999999999877665 377888877
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.. ... ...++||+|+++-.+....+ ...+++.+.++|+|||.+++..
T Consensus 105 -~~-~~~-~~~~~fD~Ii~~~~l~~~~~--------------------------~~~~l~~~~~~L~~gG~l~v~~ 151 (233)
T PRK05134 105 -EE-LAA-EHPGQFDVVTCMEMLEHVPD--------------------------PASFVRACAKLVKPGGLVFFST 151 (233)
T ss_pred -HH-hhh-hcCCCccEEEEhhHhhccCC--------------------------HHHHHHHHHHHcCCCcEEEEEe
Confidence 22 211 13468999999644332221 2368899999999999998864
No 146
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.23 E-value=1.3e-10 Score=110.51 Aligned_cols=111 Identities=21% Similarity=0.343 Sum_probs=83.3
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
+.+++.+... ++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++. ++ .+++...|. .
T Consensus 157 ~~l~~~l~l~--~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~-----~- 223 (383)
T PRK11705 157 DLICRKLQLK--PGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDY-----R- 223 (383)
T ss_pred HHHHHHhCCC--CCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECch-----h-
Confidence 3444444433 33799999999999999999875 5799999999999999999884 32 278888887 2
Q ss_pred ccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 207 ~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.+ .++||.|+++..+.... ...+..+++.+.++|||||.+++..
T Consensus 224 ~l-----~~~fD~Ivs~~~~ehvg------------------------~~~~~~~l~~i~r~LkpGG~lvl~~ 267 (383)
T PRK11705 224 DL-----NGQFDRIVSVGMFEHVG------------------------PKNYRTYFEVVRRCLKPDGLFLLHT 267 (383)
T ss_pred hc-----CCCCCEEEEeCchhhCC------------------------hHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 21 36899999976543221 1225688999999999999998853
No 147
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.23 E-value=9.6e-11 Score=104.56 Aligned_cols=121 Identities=15% Similarity=0.196 Sum_probs=97.0
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.|++..+...+++..+. ++||++||++|+-++++|..+| +.+++++|.+++..+.|++|+++.|+.++|+++.+
T Consensus 64 ~~~~g~lL~~l~~~~~a-----k~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G 138 (247)
T PLN02589 64 SADEGQFLNMLLKLINA-----KNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG 138 (247)
T ss_pred CHHHHHHHHHHHHHhCC-----CEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEec
Confidence 45667777777666543 7899999999999999999874 67999999999999999999999999999999999
Q ss_pred cCCCcccccccCcCcC----CCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 198 EIDSKGQVKNLQPDLL----EQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 198 D~~~~~~~~~l~~~~~----~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
|+ .+.++.... .++||+|+.+-- -+.|..+++.+.++|+|||
T Consensus 139 ~a-----~e~L~~l~~~~~~~~~fD~iFiDad-----------------------------K~~Y~~y~~~~l~ll~~GG 184 (247)
T PLN02589 139 PA-----LPVLDQMIEDGKYHGTFDFIFVDAD-----------------------------KDNYINYHKRLIDLVKVGG 184 (247)
T ss_pred cH-----HHHHHHHHhccccCCcccEEEecCC-----------------------------HHHhHHHHHHHHHhcCCCe
Confidence 98 555443111 368999999521 0126678888889999999
Q ss_pred EEEEE
Q psy7093 274 SIFLE 278 (322)
Q Consensus 274 ~l~~e 278 (322)
++++.
T Consensus 185 viv~D 189 (247)
T PLN02589 185 VIGYD 189 (247)
T ss_pred EEEEc
Confidence 99874
No 148
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.22 E-value=8.5e-11 Score=107.78 Aligned_cols=93 Identities=29% Similarity=0.380 Sum_probs=74.9
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+++.+++...... +.+|||+|||+|.++..++.. ..+|+++|+|+.+++.+++++...+..++++++++|+
T Consensus 23 ~i~~~Iv~~~~~~~--~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Da---- 94 (294)
T PTZ00338 23 LVLDKIVEKAAIKP--TDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDA---- 94 (294)
T ss_pred HHHHHHHHhcCCCC--cCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCH----
Confidence 45566666655432 378999999999999999987 5689999999999999999998777556799999999
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCC
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~ 230 (322)
++. ....||+||+|+||.-+.
T Consensus 95 -l~~-----~~~~~d~VvaNlPY~Ist 115 (294)
T PTZ00338 95 -LKT-----EFPYFDVCVANVPYQISS 115 (294)
T ss_pred -hhh-----cccccCEEEecCCcccCc
Confidence 432 224689999999997654
No 149
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.22 E-value=8.3e-11 Score=101.66 Aligned_cols=137 Identities=19% Similarity=0.220 Sum_probs=97.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..+||+|||.|.+.+.+|...|+..++|+|++...+..|...+...++.| +.++++|+ ...+...+..+++|-|
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da-----~~~l~~~~~~~~v~~i 92 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDA-----RELLRRLFPPGSVDRI 92 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-C-----TTHHHHHSTTTSEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccH-----HHHHhhcccCCchheE
Confidence 48999999999999999999999999999999999999999999988865 99999998 4434333456899999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC-CHHHHHHHHHH-cCCCC
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD-HLDKIKEWLGI-CGHHM 298 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~-~~~~~~~~l~~-~~~~~ 298 (322)
..|-|=......+. .. .|. ...+++...+.|+|||.+.+-+... ....+.+.+.. ++
T Consensus 93 ~i~FPDPWpK~rH~---kr-------Rl~--------~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~~~~--- 151 (195)
T PF02390_consen 93 YINFPDPWPKKRHH---KR-------RLV--------NPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEESHP--- 151 (195)
T ss_dssp EEES-----SGGGG---GG-------STT--------SHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHHHST---
T ss_pred EEeCCCCCcccchh---hh-------hcC--------CchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhcCc---
Confidence 99876433222110 00 111 2478999999999999998877643 35666677777 34
Q ss_pred ceeeEE
Q psy7093 299 KLKLVE 304 (322)
Q Consensus 299 ~~~~v~ 304 (322)
+|..+.
T Consensus 152 ~f~~~~ 157 (195)
T PF02390_consen 152 GFENIE 157 (195)
T ss_dssp TEEEE-
T ss_pred CeEEcc
Confidence 366553
No 150
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=99.22 E-value=2.1e-11 Score=101.44 Aligned_cols=80 Identities=23% Similarity=0.329 Sum_probs=59.2
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEE
Q psy7093 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv 221 (322)
.|+|++||.|.-++++|+. ..+|+++|+++..++.|+.|++.+|+.++|.++++|+ ++.+........+|+|+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~-----~~~~~~~~~~~~~D~vF 74 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDF-----FELLKRLKSNKIFDVVF 74 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-H-----HHHGGGB------SEEE
T ss_pred EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCH-----HHHHhhccccccccEEE
Confidence 6999999999999999999 4689999999999999999999999999999999999 65543211112289999
Q ss_pred EcCCCCC
Q psy7093 222 SNPPYVP 228 (322)
Q Consensus 222 ~NPPy~~ 228 (322)
.+|||.-
T Consensus 75 lSPPWGG 81 (163)
T PF09445_consen 75 LSPPWGG 81 (163)
T ss_dssp E---BSS
T ss_pred ECCCCCC
Confidence 9999975
No 151
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.22 E-value=1.2e-10 Score=110.55 Aligned_cols=99 Identities=21% Similarity=0.239 Sum_probs=81.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||++||+|.+++.++.+.+..+|+++|+++.+++.+++|++.+++.+ ++++++|+ ...+.. .++||+|
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da-----~~~l~~---~~~fD~V 129 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDA-----NALLHE---ERKFDVV 129 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhH-----HHHHhh---cCCCCEE
Confidence 58999999999999999998766699999999999999999999999864 77999998 333321 3579999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+.||| ... ..++..+...+++||++++.
T Consensus 130 ~lDP~-Gs~-----------------------------~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 130 DIDPF-GSP-----------------------------APFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred EECCC-CCc-----------------------------HHHHHHHHHHhcCCCEEEEE
Confidence 99986 211 15667777888999999885
No 152
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.21 E-value=2.2e-10 Score=104.24 Aligned_cols=104 Identities=23% Similarity=0.305 Sum_probs=76.7
Q ss_pred CeEEEEcCchhHHHHHHHHhCCC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPK---LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~---~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
.+|||+|||+|.++..+++.++. ..++|+|+|+.+++.|+++. .++.+..+|+ . .++ +..+.|
T Consensus 87 ~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~-----~-~lp--~~~~sf 152 (272)
T PRK11088 87 TALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASS-----H-RLP--FADQSL 152 (272)
T ss_pred CeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeec-----c-cCC--CcCCce
Confidence 68999999999999999987653 37999999999999997652 2478888887 2 232 346789
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-CCCHHHHHHHH
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-HDHLDKIKEWL 291 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-~~~~~~~~~~l 291 (322)
|+|+++- . | ..++++.++|||||.+++.+. ..+...+++.+
T Consensus 153 D~I~~~~--~----------------~---------------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~ 194 (272)
T PRK11088 153 DAIIRIY--A----------------P---------------CKAEELARVVKPGGIVITVTPGPRHLFELKGLI 194 (272)
T ss_pred eEEEEec--C----------------C---------------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence 9999842 1 0 123567789999999988654 34445555554
No 153
>PLN02366 spermidine synthase
Probab=99.19 E-value=9.7e-10 Score=101.34 Aligned_cols=159 Identities=14% Similarity=0.202 Sum_probs=101.2
Q ss_pred cCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 105 ~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
+|..+.++..+.+..++.....+.+....-.....+++||++|||.|.++..+++..+..+|+.+|+++.+++.|++...
T Consensus 57 ~g~~L~lDg~~q~~~~de~~Y~e~l~h~~l~~~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~ 136 (308)
T PLN02366 57 YGKVLVLDGVIQLTERDECAYQEMITHLPLCSIPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFP 136 (308)
T ss_pred CceEEEECCEeeecCccHHHHHHHHHHHHHhhCCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhh
Confidence 45666666554443333222333332211111113489999999999999999887334689999999999999999875
Q ss_pred Hc--CC-CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 185 MH--NV-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 185 ~~--~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
.. ++ .+|++++.+|. ...+.. ...++||+|+++.+-... |... -+.+.+
T Consensus 137 ~~~~~~~dpRv~vi~~Da-----~~~l~~-~~~~~yDvIi~D~~dp~~--------------~~~~--------L~t~ef 188 (308)
T PLN02366 137 DLAVGFDDPRVNLHIGDG-----VEFLKN-APEGTYDAIIVDSSDPVG--------------PAQE--------LFEKPF 188 (308)
T ss_pred hhccccCCCceEEEEChH-----HHHHhh-ccCCCCCEEEEcCCCCCC--------------chhh--------hhHHHH
Confidence 43 22 35899999998 444432 124689999997532110 0000 124578
Q ss_pred HHHHhccCccCcEEEEEEcC--CCHHHHHHHH
Q psy7093 262 CVFGSNYLKPNGSIFLETNH--DHLDKIKEWL 291 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l 291 (322)
++.+.+.|+|||+++...+. .+.+.+..++
T Consensus 189 ~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~ 220 (308)
T PLN02366 189 FESVARALRPGGVVCTQAESMWLHMDLIEDLI 220 (308)
T ss_pred HHHHHHhcCCCcEEEECcCCcccchHHHHHHH
Confidence 89999999999999875442 3344444443
No 154
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.19 E-value=2.7e-10 Score=100.18 Aligned_cols=101 Identities=12% Similarity=0.101 Sum_probs=73.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCcEEEEEccCCCccccc
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV--------------ANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l--------------~~~i~~~~~D~~~~~~~~ 206 (322)
.+|||+|||.|..++.+|.. +.+|+|+|+|+.|++.+.. ..++ ..++++.++|+ ++
T Consensus 39 ~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~-----~~ 108 (218)
T PRK13255 39 SRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDF-----FA 108 (218)
T ss_pred CeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcc-----cC
Confidence 79999999999999999987 8899999999999998642 1111 34689999999 44
Q ss_pred ccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 207 ~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
..+. ..+.||.|+--- .+..++++. -..+++.+.++|+|||.+++
T Consensus 109 l~~~--~~~~fd~v~D~~------~~~~l~~~~------------------R~~~~~~l~~lL~pgG~~~l 153 (218)
T PRK13255 109 LTAA--DLADVDAVYDRA------ALIALPEEM------------------RERYVQQLAALLPAGCRGLL 153 (218)
T ss_pred CCcc--cCCCeeEEEehH------hHhhCCHHH------------------HHHHHHHHHHHcCCCCeEEE
Confidence 3221 235789988521 122333433 34889999999999997544
No 155
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.17 E-value=1.2e-09 Score=96.70 Aligned_cols=91 Identities=22% Similarity=0.345 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhccC-CCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 123 EELIDIITDKLESS-NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 123 e~lv~~i~~~~~~~-~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
+...+.+.+.+... ..++.+|||+|||+|.++..+++. +..|+|+|+|+.+++.|+++....+..+++.+..+|+
T Consensus 46 ~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~--~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-- 121 (230)
T PRK07580 46 QRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARR--GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL-- 121 (230)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc--
Confidence 34444555555431 112378999999999999999987 4679999999999999999988877656799999987
Q ss_pred cccccccCcCcCCCCeeEEEEcCCC
Q psy7093 202 KGQVKNLQPDLLEQKFDLVVSNPPY 226 (322)
Q Consensus 202 ~~~~~~l~~~~~~~~fDlIv~NPPy 226 (322)
.. ..+.||+|+++-.+
T Consensus 122 ----~~-----~~~~fD~v~~~~~l 137 (230)
T PRK07580 122 ----ES-----LLGRFDTVVCLDVL 137 (230)
T ss_pred ----hh-----ccCCcCEEEEcchh
Confidence 11 24679999986443
No 156
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.17 E-value=6e-10 Score=92.51 Aligned_cols=96 Identities=21% Similarity=0.301 Sum_probs=69.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..++.. +.+++|+|+++.+++. ..+.....+. .... .+.++||+
T Consensus 23 ~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~-----------~~~~~~~~~~-----~~~~---~~~~~fD~ 81 (161)
T PF13489_consen 23 GKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK-----------RNVVFDNFDA-----QDPP---FPDGSFDL 81 (161)
T ss_dssp TSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH-----------TTSEEEEEEC-----HTHH---CHSSSEEE
T ss_pred CCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh-----------hhhhhhhhhh-----hhhh---ccccchhh
Confidence 489999999999999999776 4599999999999887 1123333322 1111 24679999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
|+++--+.. ++. ...+++.+.++|||||++++.+...
T Consensus 82 i~~~~~l~~------~~d--------------------~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 82 IICNDVLEH------LPD--------------------PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp EEEESSGGG------SSH--------------------HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred HhhHHHHhh------ccc--------------------HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 999733222 111 3589999999999999999977543
No 157
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.17 E-value=2.8e-10 Score=111.61 Aligned_cols=113 Identities=21% Similarity=0.264 Sum_probs=82.2
Q ss_pred HHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccc
Q psy7093 128 IITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207 (322)
Q Consensus 128 ~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~ 207 (322)
.+++.+.... +.+|||+|||+|.++..+++. ..+|+|+|+++.+++.++.. .+...+++++++|+ ...
T Consensus 28 ~il~~l~~~~--~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~---~~~~~~i~~~~~d~-----~~~ 95 (475)
T PLN02336 28 EILSLLPPYE--GKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESI---NGHYKNVKFMCADV-----TSP 95 (475)
T ss_pred HHHhhcCccC--CCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHH---hccCCceEEEEecc-----ccc
Confidence 3444444332 368999999999999999987 46899999999999876542 23234689999998 321
Q ss_pred cCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 208 LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 208 l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
...++.++||+|+++.++....+ + -...+++++.++|+|||++++
T Consensus 96 -~~~~~~~~fD~I~~~~~l~~l~~------~------------------~~~~~l~~~~r~Lk~gG~l~~ 140 (475)
T PLN02336 96 -DLNISDGSVDLIFSNWLLMYLSD------K------------------EVENLAERMVKWLKVGGYIFF 140 (475)
T ss_pred -ccCCCCCCEEEEehhhhHHhCCH------H------------------HHHHHHHHHHHhcCCCeEEEE
Confidence 11134578999999987654321 1 135789999999999999987
No 158
>PTZ00146 fibrillarin; Provisional
Probab=99.17 E-value=1.7e-09 Score=98.17 Aligned_cols=160 Identities=12% Similarity=0.115 Sum_probs=98.9
Q ss_pred cCchhHHHHHHHHHHhccCC-CCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy7093 118 PRSETEELIDIITDKLESSN-HTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF 195 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~-~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~ 195 (322)
+.|-...|...++.-+.... .+..+|||+|||+|.++..++.... ...|+++|+++.+.+...+.++.. .++.++
T Consensus 110 w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I 186 (293)
T PTZ00146 110 WNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPI 186 (293)
T ss_pred eCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEE
Confidence 45556667666655544321 1346999999999999999999864 458999999987664443333221 248888
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
..|+. .+..-....+.||+|+++-.. | +-.+.++.++.++|||||.+
T Consensus 187 ~~Da~-----~p~~y~~~~~~vDvV~~Dva~-----------------p-----------dq~~il~~na~r~LKpGG~~ 233 (293)
T PTZ00146 187 IEDAR-----YPQKYRMLVPMVDVIFADVAQ-----------------P-----------DQARIVALNAQYFLKNGGHF 233 (293)
T ss_pred ECCcc-----ChhhhhcccCCCCEEEEeCCC-----------------c-----------chHHHHHHHHHHhccCCCEE
Confidence 99983 221001123479999997531 0 01345667889999999999
Q ss_pred EEEEcCCC------HHHH----HHHHHHcCCCCceeeEEEe-cCCCCCCeEEE
Q psy7093 276 FLETNHDH------LDKI----KEWLGICGHHMKLKLVENY-KDFNNKDRFVE 317 (322)
Q Consensus 276 ~~e~~~~~------~~~~----~~~l~~~~~~~~~~~v~~~-~D~~g~~R~~~ 317 (322)
++.+.... ++.+ .+++++.+ |+.++.. -+.+.++..++
T Consensus 234 vI~ika~~id~g~~pe~~f~~ev~~L~~~G----F~~~e~v~L~Py~~~h~~v 282 (293)
T PTZ00146 234 IISIKANCIDSTAKPEVVFASEVQKLKKEG----LKPKEQLTLEPFERDHAVV 282 (293)
T ss_pred EEEEeccccccCCCHHHHHHHHHHHHHHcC----CceEEEEecCCccCCcEEE
Confidence 99653221 1222 36677765 5655433 33344454443
No 159
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=99.16 E-value=2.1e-10 Score=98.99 Aligned_cols=135 Identities=16% Similarity=0.316 Sum_probs=102.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+|||-|+|-|+.++..+++ +..+|+.+|.++..+++|+-|--..++ +.+++++.+|+ .+..+ .+.+.+||
T Consensus 135 G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~-----~e~V~-~~~D~sfD 207 (287)
T COG2521 135 GERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDA-----YEVVK-DFDDESFD 207 (287)
T ss_pred CCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccH-----HHHHh-cCCccccc
Confidence 489999999999999999988 344999999999999999988654443 23589999998 55543 35678899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC--------HHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH--------LDKIKEW 290 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~--------~~~~~~~ 290 (322)
+||-+||-.+... .| .-..+.++..+.|+|||.++--+|+.. ...+.+.
T Consensus 208 aIiHDPPRfS~Ag--eL---------------------YseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~R 264 (287)
T COG2521 208 AIIHDPPRFSLAG--EL---------------------YSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAER 264 (287)
T ss_pred eEeeCCCccchhh--hH---------------------hHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHH
Confidence 9999999655332 11 124677788999999999988776432 5668888
Q ss_pred HHHcCCCCceeeEEEecC
Q psy7093 291 LGICGHHMKLKLVENYKD 308 (322)
Q Consensus 291 l~~~~~~~~~~~v~~~~D 308 (322)
|++.| |..+...+-
T Consensus 265 Lr~vG----F~~v~~~~~ 278 (287)
T COG2521 265 LRRVG----FEVVKKVRE 278 (287)
T ss_pred HHhcC----ceeeeeehh
Confidence 88876 676665543
No 160
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.16 E-value=2.7e-10 Score=102.91 Aligned_cols=89 Identities=28% Similarity=0.443 Sum_probs=70.0
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+++.+++.+.... +.+|||+|||+|.++..+++. ..+|+++|+++.+++.+++++.. .++++++++|+
T Consensus 16 ~~~~~iv~~~~~~~--~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~---- 84 (258)
T PRK14896 16 RVVDRIVEYAEDTD--GDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDA---- 84 (258)
T ss_pred HHHHHHHHhcCCCC--cCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEecc----
Confidence 45556666654432 378999999999999999998 56899999999999999988754 24699999998
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCC
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPS 229 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~ 229 (322)
.+. ....||.|++||||..+
T Consensus 85 -~~~-----~~~~~d~Vv~NlPy~i~ 104 (258)
T PRK14896 85 -LKV-----DLPEFNKVVSNLPYQIS 104 (258)
T ss_pred -ccC-----CchhceEEEEcCCcccC
Confidence 432 12358999999999754
No 161
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=99.15 E-value=1.1e-09 Score=101.43 Aligned_cols=128 Identities=18% Similarity=0.266 Sum_probs=99.2
Q ss_pred cCeEEEeCCC--CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 105 RDLTLKMTPP--VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 105 ~~~~~~v~~~--~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
.|..|+++.. .|.||-.+|. ..+.+.... +.+|+|+++|.|.+++.+|+. ...+|+++|++|.|++..++|
T Consensus 158 ~G~~f~vD~~Kv~Fsprl~~ER--~Rva~~v~~----GE~V~DmFAGVGpfsi~~Ak~-g~~~V~A~diNP~A~~~L~eN 230 (341)
T COG2520 158 NGCRFKVDVAKVYFSPRLSTER--ARVAELVKE----GETVLDMFAGVGPFSIPIAKK-GRPKVYAIDINPDAVEYLKEN 230 (341)
T ss_pred CCEEEEEchHHeEECCCchHHH--HHHHhhhcC----CCEEEEccCCcccchhhhhhc-CCceEEEEecCHHHHHHHHHH
Confidence 3566777654 4457666654 345555544 279999999999999999998 344599999999999999999
Q ss_pred HHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 183 ~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
++.+++.+++..+++|. .+..+ ..+.+|-|++|-|... ..++
T Consensus 231 i~LN~v~~~v~~i~gD~-----rev~~---~~~~aDrIim~~p~~a------------------------------~~fl 272 (341)
T COG2520 231 IRLNKVEGRVEPILGDA-----REVAP---ELGVADRIIMGLPKSA------------------------------HEFL 272 (341)
T ss_pred HHhcCccceeeEEeccH-----HHhhh---ccccCCEEEeCCCCcc------------------------------hhhH
Confidence 99999999999999998 44332 1278999999877532 2577
Q ss_pred HHHhccCccCcEEEE
Q psy7093 263 VFGSNYLKPNGSIFL 277 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~ 277 (322)
..+.+.+++||++-+
T Consensus 273 ~~A~~~~k~~g~iHy 287 (341)
T COG2520 273 PLALELLKDGGIIHY 287 (341)
T ss_pred HHHHHHhhcCcEEEE
Confidence 788899999998755
No 162
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.15 E-value=1.3e-09 Score=96.10 Aligned_cols=104 Identities=18% Similarity=0.280 Sum_probs=79.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++...+.. ++++...|+ .+.... ..++||+
T Consensus 46 ~~~vLdlG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~-----~~~~~~--~~~~~D~ 115 (224)
T TIGR01983 46 GLRVLDVGCGGGLLSEPLARL--GANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSV-----EDLAEK--GAKSFDV 115 (224)
T ss_pred CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCH-----HHhhcC--CCCCccE
Confidence 478999999999999998886 457999999999999999998876653 488888887 322211 1368999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|+++-.+....+ ...+++.+.+.|+|||.+++..
T Consensus 116 i~~~~~l~~~~~--------------------------~~~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 116 VTCMEVLEHVPD--------------------------PQAFIRACAQLLKPGGILFFST 149 (224)
T ss_pred EEehhHHHhCCC--------------------------HHHHHHHHHHhcCCCcEEEEEe
Confidence 999644322211 3478899999999999988754
No 163
>KOG3420|consensus
Probab=99.14 E-value=1.2e-10 Score=93.25 Aligned_cols=81 Identities=21% Similarity=0.365 Sum_probs=66.7
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.++.++|+|||+|.++++.+. +....|+|+|++++|++.+.+|+....++ +.+.++|+ .+.. +..+.||
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdi-----ldle---~~~g~fD 116 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDI-----LDLE---LKGGIFD 116 (185)
T ss_pred cCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeec-----cchh---ccCCeEe
Confidence 348999999999999965544 35678999999999999999999988765 78999999 4332 2458899
Q ss_pred EEEEcCCCCCCC
Q psy7093 219 LVVSNPPYVPSL 230 (322)
Q Consensus 219 lIv~NPPy~~~~ 230 (322)
..|.||||....
T Consensus 117 taviNppFGTk~ 128 (185)
T KOG3420|consen 117 TAVINPPFGTKK 128 (185)
T ss_pred eEEecCCCCccc
Confidence 999999998654
No 164
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.13 E-value=1.1e-09 Score=101.20 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=84.0
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
|.|.+.+-+..-+...... ++.+|||+|||||..+..+++.++ ..+++++|+|+++++.|++++......-++.++++
T Consensus 44 r~E~~il~~~~~~ia~~~~-~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~g 122 (301)
T TIGR03438 44 RTEAAILERHADEIAAATG-AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICA 122 (301)
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEE
Confidence 4455444443333322111 236899999999999999999876 58999999999999999998765332224778899
Q ss_pred cCCCcccccccC--cCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 198 EIDSKGQVKNLQ--PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 198 D~~~~~~~~~l~--~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
|+ .+.++ .....+...++++.-+. ..+.++ -...+++.+.++|+|||.+
T Consensus 123 D~-----~~~~~~~~~~~~~~~~~~~~gs~~------~~~~~~------------------e~~~~L~~i~~~L~pgG~~ 173 (301)
T TIGR03438 123 DF-----TQPLALPPEPAAGRRLGFFPGSTI------GNFTPE------------------EAVAFLRRIRQLLGPGGGL 173 (301)
T ss_pred cc-----cchhhhhcccccCCeEEEEecccc------cCCCHH------------------HHHHHHHHHHHhcCCCCEE
Confidence 98 33221 10001122233332221 111121 1358999999999999999
Q ss_pred EEEEc
Q psy7093 276 FLETN 280 (322)
Q Consensus 276 ~~e~~ 280 (322)
++-+.
T Consensus 174 lig~d 178 (301)
T TIGR03438 174 LIGVD 178 (301)
T ss_pred EEecc
Confidence 98664
No 165
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.13 E-value=2.4e-10 Score=104.01 Aligned_cols=90 Identities=26% Similarity=0.369 Sum_probs=68.0
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
+++.+++.+.... +.+|||+|||+|.++..++... .+|+|+|+|+.+++.++++... .+++++++|+
T Consensus 30 i~~~i~~~l~~~~--~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~----- 96 (272)
T PRK00274 30 ILDKIVDAAGPQP--GDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETFAE----DNLTIIEGDA----- 96 (272)
T ss_pred HHHHHHHhcCCCC--cCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhhcc----CceEEEEChh-----
Confidence 4556666655432 3789999999999999999984 4899999999999999987642 4699999998
Q ss_pred ccccCcCcCCCCeeEEEEcCCCCCCC
Q psy7093 205 VKNLQPDLLEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~NPPy~~~~ 230 (322)
.+. + +..-.+|.||+||||..+.
T Consensus 97 ~~~-~--~~~~~~~~vv~NlPY~iss 119 (272)
T PRK00274 97 LKV-D--LSELQPLKVVANLPYNITT 119 (272)
T ss_pred hcC-C--HHHcCcceEEEeCCccchH
Confidence 332 1 1111159999999997643
No 166
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.11 E-value=6.4e-10 Score=97.92 Aligned_cols=118 Identities=16% Similarity=0.195 Sum_probs=94.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..+||||||.|.+.+.+|...|...++|+|+....+..|.+.+...++. ++.+++.|+ ...+....+.++.|-|
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA-----~~~l~~~~~~~sl~~I 123 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDA-----VEVLDYLIPDGSLDKI 123 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCH-----HHHHHhcCCCCCeeEE
Confidence 5899999999999999999999999999999999999999999999986 499999998 4444433455699999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
..|.|=......+.--+ + ++..+++...+.|+|||.+.+-+.+.
T Consensus 124 ~i~FPDPWpKkRH~KRR--------l----------~~~~fl~~~a~~Lk~gG~l~~aTD~~ 167 (227)
T COG0220 124 YINFPDPWPKKRHHKRR--------L----------TQPEFLKLYARKLKPGGVLHFATDNE 167 (227)
T ss_pred EEECCCCCCCccccccc--------c----------CCHHHHHHHHHHccCCCEEEEEecCH
Confidence 99887554443321111 0 14589999999999999998877653
No 167
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=7.6e-09 Score=97.49 Aligned_cols=144 Identities=18% Similarity=0.163 Sum_probs=105.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcC-CCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPK--LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLL-EQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~--~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~-~~~ 216 (322)
+.+|||+|++.|.=+.++|...++ ..|+++|+|+.-++..++|++++|+.+ +.+++.|. . ..+.... .++
T Consensus 157 ge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~-----~-~~~~~~~~~~~ 229 (355)
T COG0144 157 GERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDA-----R-RLAELLPGGEK 229 (355)
T ss_pred cCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEeccc-----c-cccccccccCc
Confidence 489999999999999999998765 567999999999999999999999987 78888876 2 1221112 236
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCCh-hHHHHHHHHHHhccCccCcEEEEEEcCCC----HHHHHHHH
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDG-LNIIKPICVFGSNYLKPNGSIFLETNHDH----LDKIKEWL 291 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~g-l~~~~~~l~~~~~~Lk~gG~l~~e~~~~~----~~~~~~~l 291 (322)
||.|+.++|....+.+..-+.-.+...+... .. ..+-.+++..+.++|||||.|++.++.-. .+.+..++
T Consensus 230 fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i-----~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L 304 (355)
T COG0144 230 FDRILLDAPCSGTGVIRRDPDVKWRRTPEDI-----AELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFL 304 (355)
T ss_pred CcEEEECCCCCCCcccccCccccccCCHHHH-----HHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHH
Confidence 9999999998877765433222222222100 01 13357899999999999999999887543 55677777
Q ss_pred HHcC
Q psy7093 292 GICG 295 (322)
Q Consensus 292 ~~~~ 295 (322)
+++.
T Consensus 305 ~~~~ 308 (355)
T COG0144 305 ERHP 308 (355)
T ss_pred HhCC
Confidence 7763
No 168
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=99.09 E-value=2.5e-09 Score=103.85 Aligned_cols=145 Identities=14% Similarity=0.148 Sum_probs=104.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++.+|||+|+|.|.-+..+|..+++ ..++++|+++..++..++|+++.|+.+ +.+.+.|. . .+... ..+.|
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~-----~-~~~~~-~~~~f 184 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDG-----R-VFGAA-LPETF 184 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCch-----h-hhhhh-chhhc
Confidence 3479999999999999999998754 589999999999999999999999865 88888887 2 22111 23579
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC----HHHHHHHHHH
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH----LDKIKEWLGI 293 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~----~~~~~~~l~~ 293 (322)
|.|+.++|......+..-+.-...+.+..-. .=...-++++..+.++|||||.|++.++.-. .+.+..++++
T Consensus 185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~----~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~ 260 (470)
T PRK11933 185 DAILLDAPCSGEGTVRKDPDALKNWSPESNL----EIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKET 260 (470)
T ss_pred CeEEEcCCCCCCcccccCHHHhhhCCHHHHH----HHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999999988766654432222222111000 0012347999999999999999999888644 3345556666
Q ss_pred cC
Q psy7093 294 CG 295 (322)
Q Consensus 294 ~~ 295 (322)
+.
T Consensus 261 ~~ 262 (470)
T PRK11933 261 YP 262 (470)
T ss_pred CC
Confidence 54
No 169
>PLN02823 spermine synthase
Probab=99.07 E-value=4.1e-09 Score=98.25 Aligned_cols=115 Identities=17% Similarity=0.317 Sum_probs=84.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN---VANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~---l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+||.+|+|.|..+..+++..+..+|+.||+++..++.|+++....+ -..|++++.+|. ...+.. ..++
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da-----~~~L~~--~~~~ 176 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDA-----RAELEK--RDEK 176 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChh-----HHHHhh--CCCC
Confidence 478999999999999999887667799999999999999999875432 146899999998 665532 3568
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHH-HHhccCccCcEEEEEEcC
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV-FGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~-~~~~~Lk~gG~l~~e~~~ 281 (322)
||+|+++.+- +... .|...|+ .+.+++ .+.+.|+|||++++..+.
T Consensus 177 yDvIi~D~~d-p~~~-----------~~~~~Ly--------t~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 177 FDVIIGDLAD-PVEG-----------GPCYQLY--------TKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred ccEEEecCCC-cccc-----------Ccchhhc--------cHHHHHHHHHHhcCCCcEEEEeccC
Confidence 9999998532 1100 0000111 235666 788999999999987654
No 170
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.06 E-value=1.1e-09 Score=93.06 Aligned_cols=131 Identities=20% Similarity=0.348 Sum_probs=80.3
Q ss_pred CchhHHHHHHHHHHh----ccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcE
Q psy7093 119 RSETEELIDIITDKL----ESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN--VANQL 192 (322)
Q Consensus 119 rp~te~lv~~i~~~~----~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~--l~~~i 192 (322)
+|....+.+++.... .....++.+|||||||+|..++.++...+..+|+.+|.++ +++..+.|++.++ ...++
T Consensus 21 W~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v 99 (173)
T PF10294_consen 21 WPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRV 99 (173)
T ss_dssp --HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------
T ss_pred echHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccc
Confidence 455666777776643 1222245899999999999999999987788999999999 9999999999887 56679
Q ss_pred EEEEccCCCccccccc-CcCcCCCCeeEEEE-cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCc
Q psy7093 193 QVFHAEIDSKGQVKNL-QPDLLEQKFDLVVS-NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLK 270 (322)
Q Consensus 193 ~~~~~D~~~~~~~~~l-~~~~~~~~fDlIv~-NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk 270 (322)
.+...||. +.. .......+||+|++ +--| .+ +.+..++.-+.++|+
T Consensus 100 ~v~~L~Wg-----~~~~~~~~~~~~~D~IlasDv~Y----------------~~-----------~~~~~L~~tl~~ll~ 147 (173)
T PF10294_consen 100 SVRPLDWG-----DELDSDLLEPHSFDVILASDVLY----------------DE-----------ELFEPLVRTLKRLLK 147 (173)
T ss_dssp EEEE--TT-----S-HHHHHHS-SSBSEEEEES--S-----------------G-----------GGHHHHHHHHHHHBT
T ss_pred cCcEEEec-----CcccccccccccCCEEEEecccc----------------hH-----------HHHHHHHHHHHHHhC
Confidence 99999983 222 11123468999987 2222 22 125688888999999
Q ss_pred cCcEEEEEEcCC
Q psy7093 271 PNGSIFLETNHD 282 (322)
Q Consensus 271 ~gG~l~~e~~~~ 282 (322)
++|.+++-...+
T Consensus 148 ~~~~vl~~~~~R 159 (173)
T PF10294_consen 148 PNGKVLLAYKRR 159 (173)
T ss_dssp T-TTEEEEEE-S
T ss_pred CCCEEEEEeCEe
Confidence 999877655544
No 171
>KOG4300|consensus
Probab=99.05 E-value=1.1e-09 Score=92.95 Aligned_cols=166 Identities=18% Similarity=0.115 Sum_probs=101.6
Q ss_pred CCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHH
Q psy7093 74 LTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAI 153 (322)
Q Consensus 74 l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~ 153 (322)
..+..+..+-..+++++...++-+.....+++...... -.+++..-+...+-.. ....+|++|||||.-
T Consensus 22 ~~p~~l~nfv~n~~~~~~~~~~~p~~~ft~~yne~~~~---------ykrelFs~i~~~~gk~--~K~~vLEvgcGtG~N 90 (252)
T KOG4300|consen 22 AVPWRLRNFVLNYESRQKSDLLIPNSNFTSIYNEIADS---------YKRELFSGIYYFLGKS--GKGDVLEVGCGTGAN 90 (252)
T ss_pred ccHHHHHHHHHHHHhcCccccccchhHHHHHHHHHHHH---------HHHHHHhhhHHHhccc--CccceEEecccCCCC
Confidence 34455555666666666666654443333333211100 0111222222222222 125689999999976
Q ss_pred HHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEE-EEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCC
Q psy7093 154 TISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQ-VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDI 232 (322)
Q Consensus 154 ~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~-~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~ 232 (322)
--..-. -|..+|+++|.++.+-+.|.+.++... +.++. |+.++. +.+++ +.++++|.||+-.-.-+..+
T Consensus 91 fkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~g------e~l~~-l~d~s~DtVV~TlvLCSve~- 160 (252)
T KOG4300|consen 91 FKFYPW-KPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADG------ENLPQ-LADGSYDTVVCTLVLCSVED- 160 (252)
T ss_pred cccccC-CCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeech------hcCcc-cccCCeeeEEEEEEEeccCC-
Confidence 433222 267899999999999999999987764 33466 888887 55542 46789999998432222111
Q ss_pred CCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE-EEEcCCCHH
Q psy7093 233 PKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF-LETNHDHLD 285 (322)
Q Consensus 233 ~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~-~e~~~~~~~ 285 (322)
..+.+++..++|+|||.++ +|++..+-.
T Consensus 161 -------------------------~~k~L~e~~rlLRpgG~iifiEHva~~y~ 189 (252)
T KOG4300|consen 161 -------------------------PVKQLNEVRRLLRPGGRIIFIEHVAGEYG 189 (252)
T ss_pred -------------------------HHHHHHHHHHhcCCCcEEEEEecccccch
Confidence 3588999999999999865 477765533
No 172
>KOG2361|consensus
Probab=99.04 E-value=5.3e-10 Score=97.09 Aligned_cols=150 Identities=22% Similarity=0.354 Sum_probs=101.1
Q ss_pred eeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC--CEEEEEeCCH
Q psy7093 96 QYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK--LKAIAIDQSK 173 (322)
Q Consensus 96 ~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~--~~v~~vDis~ 173 (322)
.|......+|+.-+..+.+-|++ +.+.+....-+.+......+.+||++|||.|.....+.+..|+ .+|++.|.|+
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfk--dR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp 107 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHENRFFK--DRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSP 107 (264)
T ss_pred hhhcchhhhhhhhhhhccccccc--hhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCCh
Confidence 34444455677777777776653 3333333333333322222247999999999999999998777 8999999999
Q ss_pred HHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCC
Q psy7093 174 HACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHD 253 (322)
Q Consensus 174 ~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~ 253 (322)
.|++..++|..... .++.....|++.+. +......+.+|+|++=. .+.+++++-
T Consensus 108 ~Ai~~vk~~~~~~e--~~~~afv~Dlt~~~----~~~~~~~~svD~it~IF------vLSAi~pek-------------- 161 (264)
T KOG2361|consen 108 RAIELVKKSSGYDE--SRVEAFVWDLTSPS----LKEPPEEGSVDIITLIF------VLSAIHPEK-------------- 161 (264)
T ss_pred HHHHHHHhccccch--hhhcccceeccchh----ccCCCCcCccceEEEEE------EEeccChHH--------------
Confidence 99999998876543 45777777874332 22334567899877621 122233332
Q ss_pred hhHHHHHHHHHHhccCccCcEEEE
Q psy7093 254 GLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 254 gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
..+.++++.++|||||.+++
T Consensus 162 ----~~~a~~nl~~llKPGG~llf 181 (264)
T KOG2361|consen 162 ----MQSVIKNLRTLLKPGGSLLF 181 (264)
T ss_pred ----HHHHHHHHHHHhCCCcEEEE
Confidence 45899999999999999988
No 173
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.04 E-value=1.9e-08 Score=90.89 Aligned_cols=182 Identities=21% Similarity=0.222 Sum_probs=112.0
Q ss_pred cCCCCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCc
Q psy7093 70 KNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSG 149 (322)
Q Consensus 70 ~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~G 149 (322)
....++.++.+.++..+.... |-. -|-..++|.. ++.. +|+ ..-.+.+...+.+- .+++|||||||
T Consensus 60 ~~~~l~~~~~~~l~~~l~~l~---PWR--KGPf~l~gi~--IDtE---WrS--d~KW~rl~p~l~~L--~gk~VLDIGC~ 125 (315)
T PF08003_consen 60 SASDLSAEQRQQLEQLLKALM---PWR--KGPFSLFGIH--IDTE---WRS--DWKWDRLLPHLPDL--KGKRVLDIGCN 125 (315)
T ss_pred CCCCCCHHHHHHHHHHHHhhC---Ccc--cCCcccCCEe--eccc---ccc--cchHHHHHhhhCCc--CCCEEEEecCC
Confidence 355688888888887765543 210 1111222322 2211 122 22334556666544 34899999999
Q ss_pred hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcC-CCCC
Q psy7093 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNP-PYVP 228 (322)
Q Consensus 150 sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NP-Py~~ 228 (322)
+|+.+..++.+ +...|+|+|-+...+...+--....+...++.+.. .- .+.++. .+.||+|+|== -|+.
T Consensus 126 nGY~~frM~~~-GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lg-----vE~Lp~---~~~FDtVF~MGVLYHr 195 (315)
T PF08003_consen 126 NGYYSFRMLGR-GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LG-----VEDLPN---LGAFDTVFSMGVLYHR 195 (315)
T ss_pred CcHHHHHHhhc-CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC-cc-----hhhccc---cCCcCEEEEeeehhcc
Confidence 99999999988 45689999998877655443223334333233321 22 355542 56899999832 2332
Q ss_pred CCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc----C--------------------CCH
Q psy7093 229 SLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN----H--------------------DHL 284 (322)
Q Consensus 229 ~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~----~--------------------~~~ 284 (322)
.+ .-..+.++.+.|++||.+++|+- . ...
T Consensus 196 r~---------------------------Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~ 248 (315)
T PF08003_consen 196 RS---------------------------PLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSV 248 (315)
T ss_pred CC---------------------------HHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCH
Confidence 22 12578889999999999999871 1 125
Q ss_pred HHHHHHHHHcCCCCceeeEEEe
Q psy7093 285 DKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 285 ~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
..+..++++.| |..|++.
T Consensus 249 ~~L~~wl~r~g----F~~v~~v 266 (315)
T PF08003_consen 249 AALKNWLERAG----FKDVRCV 266 (315)
T ss_pred HHHHHHHHHcC----CceEEEe
Confidence 77899999986 7777765
No 174
>KOG1499|consensus
Probab=99.04 E-value=6.7e-10 Score=101.63 Aligned_cols=106 Identities=22% Similarity=0.407 Sum_probs=81.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+.+.|||+|||||.+++..|+. +..+|+|||.|.-+ +.|++.+..+++.+.|+++++.+ +.+ .++.++.|
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA-GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkv------Edi--~LP~eKVD 129 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA-GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKV------EDI--ELPVEKVD 129 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh-CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecce------EEE--ecCcccee
Confidence 4489999999999999999998 57799999999766 99999999999999999999998 333 24567999
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+|||- +......||.. +..++-.--++|+|||.++=
T Consensus 130 iIvSE-----------WMGy~Ll~EsM------------ldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 130 IIVSE-----------WMGYFLLYESM------------LDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred EEeeh-----------hhhHHHHHhhh------------hhhhhhhhhhccCCCceEcc
Confidence 99992 11122222321 33555566799999998754
No 175
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.03 E-value=4.2e-09 Score=99.54 Aligned_cols=100 Identities=15% Similarity=0.217 Sum_probs=82.2
Q ss_pred CeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
.+|||++||||..++.++++.+ ..+|+++|+++.+++.+++|++.+++. ++++.+.|+ ...+.. ...+||+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da-----~~~l~~--~~~~fDv 117 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDA-----ANVLRY--RNRKFHV 117 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhH-----HHHHHH--hCCCCCE
Confidence 5899999999999999999853 468999999999999999999998876 488999998 444321 1357999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
|..|| |... ..++..+.+.+++||++++.
T Consensus 118 IdlDP-fGs~-----------------------------~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 118 IDIDP-FGTP-----------------------------APFVDSAIQASAERGLLLVT 146 (374)
T ss_pred EEeCC-CCCc-----------------------------HHHHHHHHHhcccCCEEEEE
Confidence 99999 4321 15778888999999999885
No 176
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.02 E-value=2.8e-09 Score=93.72 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=78.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH------------HcCCCCcEEEEEccCCCcccccc
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV------------MHNVANQLQVFHAEIDSKGQVKN 207 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~------------~~~l~~~i~~~~~D~~~~~~~~~ 207 (322)
+.+||++|||.|.-+..||.. +.+|+|+|+|+.|++.+.+... ... ..+++++++|+ ++.
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~-~~~i~~~~gD~-----f~l 115 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYK-GDDIEIYVADI-----FNL 115 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceec-cCceEEEEccC-----cCC
Confidence 379999999999999999998 8899999999999999865210 011 23589999999 553
Q ss_pred cCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 208 LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 208 l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
-+..-..++||+|+- ...+..++++.+ .++++.+.++|+|||.+++.+
T Consensus 116 ~~~~~~~~~fD~VyD------ra~~~Alpp~~R------------------~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 116 PKIANNLPVFDIWYD------RGAYIALPNDLR------------------TNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred CccccccCCcCeeee------ehhHhcCCHHHH------------------HHHHHHHHHHhCCCcEEEEEE
Confidence 211112368999875 233445556554 488999999999999876643
No 177
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=99.02 E-value=2.7e-09 Score=104.56 Aligned_cols=168 Identities=15% Similarity=0.199 Sum_probs=106.0
Q ss_pred CCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHcCC
Q psy7093 113 PPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP----KLKAIAIDQSKHACDLTEQNAVMHNV 188 (322)
Q Consensus 113 ~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~----~~~v~~vDis~~al~~A~~n~~~~~l 188 (322)
...|+||..++.+++.+ ... +..+|+|.+||||.+.+..++.+. ...++|.|+++....+|+.|.-.++.
T Consensus 166 GEfyTP~~v~~liv~~l----~~~--~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi 239 (489)
T COG0286 166 GEFYTPREVSELIVELL----DPE--PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGI 239 (489)
T ss_pred CccCChHHHHHHHHHHc----CCC--CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCC
Confidence 34667877666655544 322 226899999999999888887753 26799999999999999999999987
Q ss_pred CCcEEEEEccCCCcccccccCc--CcCCCCeeEEEEcCCCCCCCCCCCCChhh--hcccccccccCCCChhHHHHHHHHH
Q psy7093 189 ANQLQVFHAEIDSKGQVKNLQP--DLLEQKFDLVVSNPPYVPSLDIPKLEPEI--ALYEDIKALDGGHDGLNIIKPICVF 264 (322)
Q Consensus 189 ~~~i~~~~~D~~~~~~~~~l~~--~~~~~~fDlIv~NPPy~~~~~~~~l~~~v--~~~ep~~al~~g~~gl~~~~~~l~~ 264 (322)
...+....+|. +..... ....++||.|++||||............. .++.+...+.....+ +..++..
T Consensus 240 ~~~~~i~~~dt-----l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~af~~h 311 (489)
T COG0286 240 EGDANIRHGDT-----LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSA---DLAFLQH 311 (489)
T ss_pred Ccccccccccc-----ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCch---HHHHHHH
Confidence 64456677776 332211 11346899999999997332222111111 111111111111222 2578889
Q ss_pred HhccCccCcEEEEEEcCC------CHHHHHHHHHHc
Q psy7093 265 GSNYLKPNGSIFLETNHD------HLDKIKEWLGIC 294 (322)
Q Consensus 265 ~~~~Lk~gG~l~~e~~~~------~~~~~~~~l~~~ 294 (322)
+...|+|||...+.+..+ -...+++.+-+.
T Consensus 312 ~~~~l~~~g~aaivl~~gvlfr~~~e~~IR~~l~~~ 347 (489)
T COG0286 312 ILYKLKPGGRAAIVLPDGVLFRGGAEKDIRKDLLED 347 (489)
T ss_pred HHHhcCCCceEEEEecCCcCcCCCchHHHHHHHHhc
Confidence 999999998877665431 245566555443
No 178
>PRK06202 hypothetical protein; Provisional
Probab=99.01 E-value=2e-09 Score=95.60 Aligned_cols=77 Identities=26% Similarity=0.377 Sum_probs=56.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF----PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~----~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
+.+|||+|||+|.++..++... ++.+|+|+|+|+.+++.|+++....+ +++...+. +.++. ..+
T Consensus 61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~------~~l~~--~~~ 128 (232)
T PRK06202 61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVS------DELVA--EGE 128 (232)
T ss_pred CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEec------ccccc--cCC
Confidence 3799999999999998887642 35699999999999999988764333 45555544 12221 356
Q ss_pred CeeEEEEcCCCCC
Q psy7093 216 KFDLVVSNPPYVP 228 (322)
Q Consensus 216 ~fDlIv~NPPy~~ 228 (322)
+||+|++|..++.
T Consensus 129 ~fD~V~~~~~lhh 141 (232)
T PRK06202 129 RFDVVTSNHFLHH 141 (232)
T ss_pred CccEEEECCeeec
Confidence 8999999866543
No 179
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=99.01 E-value=1.1e-08 Score=88.99 Aligned_cols=139 Identities=20% Similarity=0.283 Sum_probs=101.1
Q ss_pred EEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEE
Q psy7093 143 MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVS 222 (322)
Q Consensus 143 iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~ 222 (322)
|.|+||--|.+++.|.+.....+++++|+++..++.|++|+...++.+++++..+|- ++.++ +....|.||.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdG-----L~~l~---~~e~~d~ivI 72 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDG-----LEVLK---PGEDVDTIVI 72 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SG-----GGG-----GGG---EEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCc-----ccccC---CCCCCCEEEE
Confidence 689999999999999999666789999999999999999999999999999999998 66654 2233677765
Q ss_pred cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceee
Q psy7093 223 NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKL 302 (322)
Q Consensus 223 NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~ 302 (322)
+|..| ..+..|++.....++....+++ .+..+...+++++.++|+ .+..
T Consensus 73 ---------------------------AGMGG-~lI~~ILe~~~~~~~~~~~lIL-qP~~~~~~LR~~L~~~gf--~I~~ 121 (205)
T PF04816_consen 73 ---------------------------AGMGG-ELIIEILEAGPEKLSSAKRLIL-QPNTHAYELRRWLYENGF--EIID 121 (205)
T ss_dssp ---------------------------EEE-H-HHHHHHHHHTGGGGTT--EEEE-EESS-HHHHHHHHHHTTE--EEEE
T ss_pred ---------------------------ecCCH-HHHHHHHHhhHHHhccCCeEEE-eCCCChHHHHHHHHHCCC--EEEE
Confidence 23333 3477899988888877667776 677889999999999985 4555
Q ss_pred EEEecCCCCCCeEEEEEE
Q psy7093 303 VENYKDFNNKDRFVELKL 320 (322)
Q Consensus 303 v~~~~D~~g~~R~~~~~~ 320 (322)
-.+..|--..+-++.+.+
T Consensus 122 E~lv~e~~~~YeIi~~~~ 139 (205)
T PF04816_consen 122 EDLVEENGRFYEIIVAER 139 (205)
T ss_dssp EEEEEETTEEEEEEEEEE
T ss_pred eEEEeECCEEEEEEEEEe
Confidence 556666655555555554
No 180
>KOG2899|consensus
Probab=99.00 E-value=2.6e-09 Score=92.72 Aligned_cols=48 Identities=19% Similarity=0.386 Sum_probs=44.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH 186 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~ 186 (322)
.+..+||+||-+|.+++++|+.+....|.|+||++..++.|++|++..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 447899999999999999999999899999999999999999997654
No 181
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.00 E-value=5.2e-09 Score=94.24 Aligned_cols=90 Identities=30% Similarity=0.399 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+++.+++.+.... +.+|||+|||+|.++..+++.. ..|+++|+++.+++.++.+... ..+++++++|+
T Consensus 15 ~~i~~~i~~~~~~~~--~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~--- 84 (253)
T TIGR00755 15 ESVIQKIVEAANVLE--GDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDA--- 84 (253)
T ss_pred HHHHHHHHHhcCCCC--cCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHhCc---CCcEEEEECch---
Confidence 345566666665432 3799999999999999999985 4699999999999999987643 34699999998
Q ss_pred ccccccCcCcCCCCee---EEEEcCCCCCC
Q psy7093 203 GQVKNLQPDLLEQKFD---LVVSNPPYVPS 229 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fD---lIv~NPPy~~~ 229 (322)
.+. + ...+| +|++|+||...
T Consensus 85 --~~~-~----~~~~d~~~~vvsNlPy~i~ 107 (253)
T TIGR00755 85 --LKV-D----LPDFPKQLKVVSNLPYNIS 107 (253)
T ss_pred --hcC-C----hhHcCCcceEEEcCChhhH
Confidence 332 1 12455 99999999753
No 182
>KOG2915|consensus
Probab=98.99 E-value=3.1e-08 Score=87.51 Aligned_cols=175 Identities=18% Similarity=0.230 Sum_probs=127.4
Q ss_pred cCCCceeEecceeecCeEEEeCCCCcc----cCchhHHH-------------HHHHHHHhccCCCCCCeEEEEcCchhHH
Q psy7093 91 ARMPVQYIIKEWNFRDLTLKMTPPVFI----PRSETEEL-------------IDIITDKLESSNHTPTRMIEIGSGTGAI 153 (322)
Q Consensus 91 ~~~p~~yi~g~~~f~~~~~~v~~~~~i----prp~te~l-------------v~~i~~~~~~~~~~~~~iLDlg~GsG~~ 153 (322)
.-.|-.-|+|+ +||..+..+.|-|+ |.||...+ +..++.++... ++.+|++-|+|||.+
T Consensus 44 Ga~~h~~iIGK--~~G~~v~sskG~~vylL~PTpELWTl~LphRTQI~Yt~Dia~I~~~L~i~--PGsvV~EsGTGSGSl 119 (314)
T KOG2915|consen 44 GALPHSDIIGK--PYGSKVASSKGKFVYLLQPTPELWTLALPHRTQILYTPDIAMILSMLEIR--PGSVVLESGTGSGSL 119 (314)
T ss_pred cccchhheecC--CccceeeecCCcEEEEecCChHHhhhhccCcceEEecccHHHHHHHhcCC--CCCEEEecCCCcchH
Confidence 35666778887 68888888877333 44443333 34556666655 348999999999999
Q ss_pred HHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCC
Q psy7093 154 TISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDI 232 (322)
Q Consensus 154 ~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~ 232 (322)
+.++++.. |..+++..|......+.|.+..+.+++.+++++.+-|+...+. ......+|.|+.+.|-..
T Consensus 120 ShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF------~~ks~~aDaVFLDlPaPw---- 189 (314)
T KOG2915|consen 120 SHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF------LIKSLKADAVFLDLPAPW---- 189 (314)
T ss_pred HHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc------cccccccceEEEcCCChh----
Confidence 99999986 6679999999999999999999999999999999999832111 112568999999876321
Q ss_pred CCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC--CCHHHHHHHHHHcCCCCceeeEEEecCCC
Q psy7093 233 PKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLDKIKEWLGICGHHMKLKLVENYKDFN 310 (322)
Q Consensus 233 ~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l~~~~~~~~~~~v~~~~D~~ 310 (322)
..+..+...||.+|.-++.+.+ .|-+...+.+.+.| |..+.+..++.
T Consensus 190 ---------------------------~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~g----f~~i~~vEv~~ 238 (314)
T KOG2915|consen 190 ---------------------------EAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLG----FIEIETVEVLL 238 (314)
T ss_pred ---------------------------hhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCC----CceEEEEEeeh
Confidence 2344566688888865555543 66778888888886 56666666665
No 183
>KOG1541|consensus
Probab=98.98 E-value=1.1e-08 Score=87.85 Aligned_cols=137 Identities=16% Similarity=0.138 Sum_probs=91.7
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+.+..++.+....+.+.-|||||||||.-+..+... +...+|+|+|+.|++.|.+. .. + -.+..+|+
T Consensus 35 em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~--e~--e--gdlil~DM---- 102 (270)
T KOG1541|consen 35 EMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVER--EL--E--GDLILCDM---- 102 (270)
T ss_pred HHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHh--hh--h--cCeeeeec----
Confidence 3455666666544334578999999999988877766 68899999999999999862 22 1 24677887
Q ss_pred cccccCcCcCCCCeeEEEEc--CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 204 QVKNLQPDLLEQKFDLVVSN--PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~N--PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
-+.++ +..+.||-+|+= --|....+ -..+.|... +..|+.....+|++|+..++..-+
T Consensus 103 -G~Glp--frpGtFDg~ISISAvQWLcnA~-------~s~~~P~~R----------l~~FF~tLy~~l~rg~raV~QfYp 162 (270)
T KOG1541|consen 103 -GEGLP--FRPGTFDGVISISAVQWLCNAD-------KSLHVPKKR----------LLRFFGTLYSCLKRGARAVLQFYP 162 (270)
T ss_pred -CCCCC--CCCCccceEEEeeeeeeecccC-------ccccChHHH----------HHHHhhhhhhhhccCceeEEEecc
Confidence 55554 567899977761 11111111 112333332 357888889999999999998876
Q ss_pred CCHHHHHHHHH
Q psy7093 282 DHLDKIKEWLG 292 (322)
Q Consensus 282 ~~~~~~~~~l~ 292 (322)
.....+.-++.
T Consensus 163 en~~q~d~i~~ 173 (270)
T KOG1541|consen 163 ENEAQIDMIMQ 173 (270)
T ss_pred cchHHHHHHHH
Confidence 55554444443
No 184
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.97 E-value=4.6e-08 Score=87.68 Aligned_cols=164 Identities=15% Similarity=0.212 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK--LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~--~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~ 200 (322)
+.++...+..+... ..+.+|||++||.|.-.+-+....|. .+|...|.|+..++..++-++..|+.+-++|.++|++
T Consensus 120 ~~~i~~ai~~L~~~-g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAf 198 (311)
T PF12147_consen 120 EELIRQAIARLREQ-GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAF 198 (311)
T ss_pred HHHHHHHHHHHHhc-CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCC
Confidence 33444444444432 24589999999999998888888876 7999999999999999999999999987799999995
Q ss_pred CcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 201 ~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
+...+..+ ....+++|..--|--..+ -+..+..+....+.+.|||++++.--
T Consensus 199 d~~~l~~l-----~p~P~l~iVsGL~ElF~D-----------------------n~lv~~sl~gl~~al~pgG~lIyTgQ 250 (311)
T PF12147_consen 199 DRDSLAAL-----DPAPTLAIVSGLYELFPD-----------------------NDLVRRSLAGLARALEPGGYLIYTGQ 250 (311)
T ss_pred CHhHhhcc-----CCCCCEEEEecchhhCCc-----------------------HHHHHHHHHHHHHHhCCCcEEEEcCC
Confidence 43333222 335677776333222111 12356778888999999999998321
Q ss_pred --CCCH-----------------------HHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEE
Q psy7093 281 --HDHL-----------------------DKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELK 319 (322)
Q Consensus 281 --~~~~-----------------------~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~ 319 (322)
+.|. .++.++.+.+| |..++.+-|..|+--+-.++
T Consensus 251 PwHPQle~IAr~LtsHr~g~~WvMRrRsq~EmD~Lv~~aG----F~K~~q~ID~~GIFTVSlA~ 310 (311)
T PF12147_consen 251 PWHPQLEMIARVLTSHRDGKAWVMRRRSQAEMDQLVEAAG----FEKIDQRIDEWGIFTVSLAR 310 (311)
T ss_pred CCCcchHHHHHHHhcccCCCceEEEecCHHHHHHHHHHcC----CchhhheeccCCceEEEeec
Confidence 1222 34445555553 67777777888875555554
No 185
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.94 E-value=3.3e-08 Score=84.96 Aligned_cols=163 Identities=17% Similarity=0.247 Sum_probs=102.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
+.+.+.+.+.... .+|||||||||.-+..+|..+|.....-.|.++..+...+..+...++++-..-+..|+..+.-
T Consensus 14 Il~vL~~~l~~~~---~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w 90 (204)
T PF06080_consen 14 ILEVLKQYLPDSG---TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPW 90 (204)
T ss_pred HHHHHHHHhCccC---ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCC
Confidence 3444444454431 2599999999999999999999999999999999987777777776665533345566521100
Q ss_pred ccccCcCcCCCCeeEEEE-cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE-----
Q psy7093 205 VKNLQPDLLEQKFDLVVS-NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE----- 278 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~-NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e----- 278 (322)
--..+.....+.||.|++ |.--+ ++- ...+.+++.+.++|++||.|++-
T Consensus 91 ~~~~~~~~~~~~~D~i~~~N~lHI-------~p~------------------~~~~~lf~~a~~~L~~gG~L~~YGPF~~ 145 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCINMLHI-------SPW------------------SAVEGLFAGAARLLKPGGLLFLYGPFNR 145 (204)
T ss_pred ccccccccCCCCcceeeehhHHHh-------cCH------------------HHHHHHHHHHHHhCCCCCEEEEeCCccc
Confidence 000000113468999998 32111 111 12568999999999999999871
Q ss_pred ---E-------------------cCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 279 ---T-------------------NHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 279 ---~-------------------~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
+ |-+.-+.+.++..++|. ..+ -..|+--+-++++++|
T Consensus 146 ~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL----~l~-~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 146 DGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGL----ELE-EDIDMPANNLLLVFRK 204 (204)
T ss_pred CCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCC----ccC-cccccCCCCeEEEEeC
Confidence 1 22334555556565552 222 2346677777777665
No 186
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.90 E-value=6.2e-08 Score=82.76 Aligned_cols=131 Identities=18% Similarity=0.260 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhcc---CCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 123 EELIDIITDKLES---SNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 123 e~lv~~i~~~~~~---~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
+.+...+++.+.. ......+++|+|+|.|.-++.+|-.+|+.+++.+|.+..-+...+.-+..++++| ++++++++
T Consensus 29 ~~~~~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~ 107 (184)
T PF02527_consen 29 EIWERHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRA 107 (184)
T ss_dssp HHHHHHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-H
T ss_pred HHHHHHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeee
Confidence 3334456555432 1112238999999999999999999999999999999999999999999999975 99999998
Q ss_pred CCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 200 DSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 200 ~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
.+ . ....+||+|++= ...| ...+++.+..+|++||.+++--
T Consensus 108 -----E~--~--~~~~~fd~v~aR-----------------Av~~-------------l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 108 -----EE--P--EYRESFDVVTAR-----------------AVAP-------------LDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp -----HH--T--TTTT-EEEEEEE-----------------SSSS-------------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred -----cc--c--ccCCCccEEEee-----------------hhcC-------------HHHHHHHHHHhcCCCCEEEEEc
Confidence 33 1 246789999992 1111 4578899999999999999988
Q ss_pred cCCCHHHHHHHHHH
Q psy7093 280 NHDHLDKIKEWLGI 293 (322)
Q Consensus 280 ~~~~~~~~~~~l~~ 293 (322)
|....+++.+.-..
T Consensus 149 G~~~~~El~~~~~~ 162 (184)
T PF02527_consen 149 GPDAEEELEEAKKA 162 (184)
T ss_dssp SS--HHHHHTHHHH
T ss_pred CCChHHHHHHHHhH
Confidence 98887777665443
No 187
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.90 E-value=1.1e-07 Score=81.85 Aligned_cols=151 Identities=21% Similarity=0.311 Sum_probs=120.1
Q ss_pred HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 127 ~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
+.+.+.++.. .++.|+||-.|++++.+.+..+...++++|+++..++.|.+|+..+++.+++++..+|. +.
T Consensus 8 ~~va~~V~~~----~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg-----l~ 78 (226)
T COG2384 8 TTVANLVKQG----ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG-----LA 78 (226)
T ss_pred HHHHHHHHcC----CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC-----cc
Confidence 3445555543 45999999999999999999999999999999999999999999999999999999998 66
Q ss_pred ccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHH
Q psy7093 207 NLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDK 286 (322)
Q Consensus 207 ~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~ 286 (322)
.+. .+..+|.|+. +|..| ..++.|+++..+.|+.--.+++ -++.+...
T Consensus 79 ~l~---~~d~~d~ivI---------------------------AGMGG-~lI~~ILee~~~~l~~~~rlIL-QPn~~~~~ 126 (226)
T COG2384 79 VLE---LEDEIDVIVI---------------------------AGMGG-TLIREILEEGKEKLKGVERLIL-QPNIHTYE 126 (226)
T ss_pred ccC---ccCCcCEEEE---------------------------eCCcH-HHHHHHHHHhhhhhcCcceEEE-CCCCCHHH
Confidence 653 3457888776 33444 3477899999998875555665 67888999
Q ss_pred HHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 287 IKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 287 ~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
+++++..++| .+..-.+..+-...+-++++.+
T Consensus 127 LR~~L~~~~~--~I~~E~ileE~~kiYEIlv~e~ 158 (226)
T COG2384 127 LREWLSANSY--EIKAETILEEDGKIYEILVVEK 158 (226)
T ss_pred HHHHHHhCCc--eeeeeeeecccCeEEEEEEEec
Confidence 9999999986 4556667777766777776665
No 188
>KOG1663|consensus
Probab=98.87 E-value=3.3e-08 Score=85.62 Aligned_cols=121 Identities=16% Similarity=0.273 Sum_probs=97.9
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
.|+.-.++..+++.+.. +++||+|+-||+-++++|..+|. .+|+++|+++.+.+++.+-.+..++..+|+++++
T Consensus 58 ~~d~g~fl~~li~~~~a-----k~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g 132 (237)
T KOG1663|consen 58 GPDKGQFLQMLIRLLNA-----KRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEG 132 (237)
T ss_pred ChHHHHHHHHHHHHhCC-----ceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeec
Confidence 34556677777776654 78999999999999999999874 6999999999999999998999999999999999
Q ss_pred cCCCcccccccCc---CcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 198 EIDSKGQVKNLQP---DLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 198 D~~~~~~~~~l~~---~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
+. .+.+.+ ....+.||+++.+- +. +.|....+++.+++++||+
T Consensus 133 ~a-----~esLd~l~~~~~~~tfDfaFvDa------dK-----------------------~nY~~y~e~~l~Llr~GGv 178 (237)
T KOG1663|consen 133 PA-----LESLDELLADGESGTFDFAFVDA------DK-----------------------DNYSNYYERLLRLLRVGGV 178 (237)
T ss_pred ch-----hhhHHHHHhcCCCCceeEEEEcc------ch-----------------------HHHHHHHHHHHhhcccccE
Confidence 98 554433 22457899999852 00 1256888999999999999
Q ss_pred EEEE
Q psy7093 275 IFLE 278 (322)
Q Consensus 275 l~~e 278 (322)
+++.
T Consensus 179 i~~D 182 (237)
T KOG1663|consen 179 IVVD 182 (237)
T ss_pred EEEe
Confidence 9884
No 189
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.86 E-value=2e-08 Score=97.11 Aligned_cols=104 Identities=18% Similarity=0.383 Sum_probs=72.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhC----CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF----PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~----~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
...|+|+|||+|.++...++.. ...+|++||.++.|....++.++.++..++|+++++|+ +.+. ...
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~------r~v~---lpe 257 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDM------REVE---LPE 257 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-T------TTSC---HSS
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcc------cCCC---CCC
Confidence 3689999999999987776652 34699999999999988887778888888999999998 3332 245
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
++|+|||-. ... +|...- .-..+..+.++|||||+++
T Consensus 258 kvDIIVSEl--------------------LGs-fg~nEl---~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 258 KVDIIVSEL--------------------LGS-FGDNEL---SPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -EEEEEE-----------------------BT-TBTTTS---HHHHHHHGGGGEEEEEEEE
T ss_pred ceeEEEEec--------------------cCC-cccccc---CHHHHHHHHhhcCCCCEEe
Confidence 899999932 111 111111 2245677889999999764
No 190
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.85 E-value=2.9e-08 Score=97.83 Aligned_cols=131 Identities=20% Similarity=0.183 Sum_probs=98.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
...+||||||.|.+.+.+|..+|+..++|+|++...+..|.+.+...++.| +.+++.|+ ..+...++.+++|.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~------~~~~~~~~~~sv~~ 420 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNL------DLILNDLPNNSLDG 420 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCH------HHHHHhcCcccccE
Confidence 368999999999999999999999999999999999998888888888765 88888876 33333356778999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC-HHHHHHHHHHcC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH-LDKIKEWLGICG 295 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~-~~~~~~~l~~~~ 295 (322)
|..|.|=.+.+..+.-.. + +...+++...+.|+|||.+.+-+.... ...+.+.+..++
T Consensus 421 i~i~FPDPWpKkrh~krR-l-----------------~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~ 479 (506)
T PRK01544 421 IYILFPDPWIKNKQKKKR-I-----------------FNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNG 479 (506)
T ss_pred EEEECCCCCCCCCCcccc-c-----------------cCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCC
Confidence 999877554443221111 0 134789999999999999988775433 444555666554
No 191
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.85 E-value=1.9e-08 Score=85.43 Aligned_cols=68 Identities=18% Similarity=0.416 Sum_probs=56.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||.|.+...+... .+..++|+|++++.+..+..+ | +.++++|+ .+.+. .+++++||.|
T Consensus 15 srVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dl-----d~gL~-~f~d~sFD~V 79 (193)
T PF07021_consen 15 SRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR----G----VSVIQGDL-----DEGLA-DFPDQSFDYV 79 (193)
T ss_pred CEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc----C----CCEEECCH-----HHhHh-hCCCCCccEE
Confidence 79999999999999888886 589999999999987766533 3 67899999 45554 3578899999
Q ss_pred EEc
Q psy7093 221 VSN 223 (322)
Q Consensus 221 v~N 223 (322)
|.+
T Consensus 80 Ils 82 (193)
T PF07021_consen 80 ILS 82 (193)
T ss_pred ehH
Confidence 984
No 192
>KOG2730|consensus
Probab=98.84 E-value=7e-09 Score=88.83 Aligned_cols=102 Identities=18% Similarity=0.246 Sum_probs=79.5
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~ 196 (322)
.|.+..+.+...+..... ...|+|..||.|.-++..|.. ...|+++|++|.-+..|++|++-+|+++||+|++
T Consensus 77 Tpe~ia~~iA~~v~~~~~-----~~~iidaf~g~gGntiqfa~~--~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~ 149 (263)
T KOG2730|consen 77 TPEKIAEHIANRVVACMN-----AEVIVDAFCGVGGNTIQFALQ--GPYVIAIDIDPVKIACARHNAEVYGVPDRITFIC 149 (263)
T ss_pred ccHHHHHHHHHHHHHhcC-----cchhhhhhhcCCchHHHHHHh--CCeEEEEeccHHHHHHHhccceeecCCceeEEEe
Confidence 355666666666555442 168999999999999999988 5679999999999999999999999999999999
Q ss_pred ccCCCcccccccCc-CcCCCCeeEEEEcCCCCCCC
Q psy7093 197 AEIDSKGQVKNLQP-DLLEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 197 ~D~~~~~~~~~l~~-~~~~~~fDlIv~NPPy~~~~ 230 (322)
+|+ ++.... .+....+|+|...|||..++
T Consensus 150 GD~-----ld~~~~lq~~K~~~~~vf~sppwggp~ 179 (263)
T KOG2730|consen 150 GDF-----LDLASKLKADKIKYDCVFLSPPWGGPS 179 (263)
T ss_pred chH-----HHHHHHHhhhhheeeeeecCCCCCCcc
Confidence 999 443211 12344688999999987544
No 193
>KOG1500|consensus
Probab=98.83 E-value=1.2e-08 Score=92.45 Aligned_cols=122 Identities=18% Similarity=0.359 Sum_probs=86.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.++.|||+|||||.++...+.. +..+|++||.| ++.+.|++-++.+++.+||.++.+.+ +.+. ..++.|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKi------Edie---LPEk~D 245 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKI------EDIE---LPEKVD 245 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcc------cccc---Cchhcc
Confidence 3478999999999999998887 67799999998 57899999998889999999999988 3322 246899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC------CHHHHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD------HLDKIKEWLG 292 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~------~~~~~~~~l~ 292 (322)
+||+.|- ..|--..+. ++.. -.++++|+|+|.++=.+|.- .+....+.+.
T Consensus 246 viISEPM-------G~mL~NERM----------------LEsY-l~Ark~l~P~GkMfPT~gdiHlAPFsDE~Ly~E~~n 301 (517)
T KOG1500|consen 246 VIISEPM-------GYMLVNERM----------------LESY-LHARKWLKPNGKMFPTVGDIHLAPFSDEQLYVEQFN 301 (517)
T ss_pred EEEeccc-------hhhhhhHHH----------------HHHH-HHHHhhcCCCCcccCcccceeecccchHHHHHHHHh
Confidence 9999763 111111111 1122 24569999999988766543 3444455555
Q ss_pred HcC
Q psy7093 293 ICG 295 (322)
Q Consensus 293 ~~~ 295 (322)
+..
T Consensus 302 kAn 304 (517)
T KOG1500|consen 302 KAN 304 (517)
T ss_pred hhh
Confidence 543
No 194
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=98.83 E-value=2.3e-08 Score=86.31 Aligned_cols=74 Identities=15% Similarity=0.372 Sum_probs=56.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|||+|||+|.++..++.. ....++|+|+|+.+++.|+.+ +++++++|+ .+.++. +..++||+|
T Consensus 15 ~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~-----~~~l~~-~~~~sfD~V 79 (194)
T TIGR02081 15 SRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVAR--------GVNVIQGDL-----DEGLEA-FPDKSFDYV 79 (194)
T ss_pred CEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEh-----hhcccc-cCCCCcCEE
Confidence 68999999999999988876 356889999999999887642 267888887 332211 245689999
Q ss_pred EEcCCCCCC
Q psy7093 221 VSNPPYVPS 229 (322)
Q Consensus 221 v~NPPy~~~ 229 (322)
++|.++...
T Consensus 80 i~~~~l~~~ 88 (194)
T TIGR02081 80 ILSQTLQAT 88 (194)
T ss_pred EEhhHhHcC
Confidence 999876543
No 195
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.82 E-value=4.6e-08 Score=85.95 Aligned_cols=120 Identities=20% Similarity=0.265 Sum_probs=82.9
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH-HHHHcC----------CCCcEEEEEccCCCcccccccC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ-NAVMHN----------VANQLQVFHAEIDSKGQVKNLQ 209 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~-n~~~~~----------l~~~i~~~~~D~~~~~~~~~l~ 209 (322)
.+||.+|||.|.-...+|.. +.+|+|+|+|+.|++.+.+ |..... -.++|+++++|+ |..-+
T Consensus 39 ~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDf-----F~l~~ 111 (218)
T PF05724_consen 39 GRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDF-----FELPP 111 (218)
T ss_dssp EEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-T-----TTGGG
T ss_pred CeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccc-----ccCCh
Confidence 69999999999999999998 7899999999999999843 221110 123689999999 65322
Q ss_pred cCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE-E--------c
Q psy7093 210 PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE-T--------N 280 (322)
Q Consensus 210 ~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e-~--------~ 280 (322)
. ..++||+|+= ...+..++++.+ .+..+.+.++|+|||.+++. + |
T Consensus 112 ~--~~g~fD~iyD------r~~l~Alpp~~R------------------~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~G 165 (218)
T PF05724_consen 112 E--DVGKFDLIYD------RTFLCALPPEMR------------------ERYAQQLASLLKPGGRGLLITLEYPQGEMEG 165 (218)
T ss_dssp S--CHHSEEEEEE------CSSTTTS-GGGH------------------HHHHHHHHHCEEEEEEEEEEEEES-CSCSSS
T ss_pred h--hcCCceEEEE------ecccccCCHHHH------------------HHHHHHHHHHhCCCCcEEEEEEEcCCcCCCC
Confidence 1 2358999986 334455666654 48899999999999994332 2 1
Q ss_pred C---CCHHHHHHHHHH
Q psy7093 281 H---DHLDKIKEWLGI 293 (322)
Q Consensus 281 ~---~~~~~~~~~l~~ 293 (322)
+ -..+++.+++..
T Consensus 166 PPf~v~~~ev~~l~~~ 181 (218)
T PF05724_consen 166 PPFSVTEEEVRELFGP 181 (218)
T ss_dssp SS----HHHHHHHHTT
T ss_pred cCCCCCHHHHHHHhcC
Confidence 1 125677777763
No 196
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=98.82 E-value=1.9e-08 Score=86.84 Aligned_cols=122 Identities=14% Similarity=0.251 Sum_probs=87.1
Q ss_pred ecCeEE-EeCCCCcc-cCchhHHHHHHHHHHhccCC----CCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHH
Q psy7093 104 FRDLTL-KMTPPVFI-PRSETEELIDIITDKLESSN----HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACD 177 (322)
Q Consensus 104 f~~~~~-~v~~~~~i-prp~te~lv~~i~~~~~~~~----~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~ 177 (322)
||+.++ .+.++.+- |-|....++..+.+.+...+ .+..++||+|+|.-||--.+..+--+++.+|.|+++.+++
T Consensus 37 fY~v~~wdiPeg~LCPpvPgRAdYih~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~ 116 (292)
T COG3129 37 FYAVRYWDIPEGFLCPPVPGRADYIHHLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLS 116 (292)
T ss_pred hcceeEecCCCCCcCCCCCChhHHHHHHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHH
Confidence 566663 34455555 56788888888887775432 1446899999999999776666555789999999999999
Q ss_pred HHHHHHHHc-CCCCcEEEEEccCCCccccccc-CcCc-CCCCeeEEEEcCCCCCCC
Q psy7093 178 LTEQNAVMH-NVANQLQVFHAEIDSKGQVKNL-QPDL-LEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 178 ~A~~n~~~~-~l~~~i~~~~~D~~~~~~~~~l-~~~~-~~~~fDlIv~NPPy~~~~ 230 (322)
.|+.++..+ ++...|++....= -..+ +... ..+.||+++|||||+.+.
T Consensus 117 sA~~ii~~N~~l~~~I~lr~qk~-----~~~if~giig~nE~yd~tlCNPPFh~s~ 167 (292)
T COG3129 117 SAKAIISANPGLERAIRLRRQKD-----SDAIFNGIIGKNERYDATLCNPPFHDSA 167 (292)
T ss_pred HHHHHHHcCcchhhheeEEeccC-----ccccccccccccceeeeEecCCCcchhH
Confidence 999999887 7777777764321 1111 1111 256899999999998654
No 197
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.80 E-value=6.4e-08 Score=86.44 Aligned_cols=94 Identities=19% Similarity=0.380 Sum_probs=72.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|+|+|+|+|.++..+++++|+.+++..|. |..++.+++ .+|++++.+|+ ++.+ +. +|++
T Consensus 102 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~-----f~~~----P~--~D~~ 162 (241)
T PF00891_consen 102 KTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDF-----FDPL----PV--ADVY 162 (241)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-T-----TTCC----SS--ESEE
T ss_pred cEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccH-----Hhhh----cc--ccce
Confidence 6899999999999999999999999999999 778888876 57899999999 6544 23 9999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccC--cEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPN--GSIFL 277 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~g--G~l~~ 277 (322)
+..- -++..+++. ...+++++.+.|+|| |.+++
T Consensus 163 ~l~~------vLh~~~d~~------------------~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 163 LLRH------VLHDWSDED------------------CVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp EEES------SGGGS-HHH------------------HHHHHHHHHHHSEECTTEEEEE
T ss_pred eeeh------hhhhcchHH------------------HHHHHHHHHHHhCCCCCCeEEE
Confidence 8732 222223322 468999999999999 88765
No 198
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.80 E-value=3.1e-07 Score=79.92 Aligned_cols=186 Identities=20% Similarity=0.261 Sum_probs=120.0
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCceeEecceeecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCC--C-CCeEEEEcCc
Q psy7093 73 ELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNH--T-PTRMIEIGSG 149 (322)
Q Consensus 73 ~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~--~-~~~iLDlg~G 149 (322)
..+.++.+++..+++-..+ |+..+... -++-..+.+...+++.+..... . +.+++|+|+|
T Consensus 15 ~~~~~~~~~l~~Y~~lL~~-------------wN~~~NLt----~~~~~~e~~~rHilDSl~~~~~~~~~~~~~~DIGSG 77 (215)
T COG0357 15 SVTEEQLEKLEAYVELLLK-------------WNKAYNLT----AIRDPEELWQRHILDSLVLLPYLDGKAKRVLDIGSG 77 (215)
T ss_pred CccHHHHHHHHHHHHHHHH-------------hhHhcCCC----CCCCHHHHHHHHHHHHhhhhhcccccCCEEEEeCCC
Confidence 3566777777777665553 22222111 1244445566666665543211 1 3799999999
Q ss_pred hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCC-eeEEEEcCCCCC
Q psy7093 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQK-FDLVVSNPPYVP 228 (322)
Q Consensus 150 sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~-fDlIv~NPPy~~ 228 (322)
.|.-++.+|-.+|+.+|+.+|....-+...+.-...++++| ++++++.+ +... ...+ ||+|+|-
T Consensus 78 aGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~Ra------E~~~---~~~~~~D~vtsR----- 142 (215)
T COG0357 78 AGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRA------EEFG---QEKKQYDVVTSR----- 142 (215)
T ss_pred CCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhH------hhcc---cccccCcEEEee-----
Confidence 99999999988999999999999999999998888999875 99999998 3322 1223 9999982
Q ss_pred CCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc---CCCHHHHHHHHHHcCCCCceeeEEE
Q psy7093 229 SLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN---HDHLDKIKEWLGICGHHMKLKLVEN 305 (322)
Q Consensus 229 ~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~---~~~~~~~~~~l~~~~~~~~~~~v~~ 305 (322)
. +.-...+.+-+..++++||.+++-.+ .+.-..........+. .+..+..
T Consensus 143 --A-----------------------va~L~~l~e~~~pllk~~g~~~~~k~~~~~~e~~e~~~a~~~~~~--~~~~~~~ 195 (215)
T COG0357 143 --A-----------------------VASLNVLLELCLPLLKVGGGFLAYKGLAGKDELPEAEKAILPLGG--QVEKVFS 195 (215)
T ss_pred --h-----------------------ccchHHHHHHHHHhcccCCcchhhhHHhhhhhHHHHHHHHHhhcC--cEEEEEE
Confidence 0 11134788889999999998754333 3444444444444432 2444444
Q ss_pred ecCCCCC-CeEEE
Q psy7093 306 YKDFNNK-DRFVE 317 (322)
Q Consensus 306 ~~D~~g~-~R~~~ 317 (322)
.....+. +|.++
T Consensus 196 ~~~p~~~~~r~l~ 208 (215)
T COG0357 196 LTVPELDGERHLV 208 (215)
T ss_pred eecCCCCCceEEE
Confidence 4443332 34444
No 199
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.79 E-value=4.6e-09 Score=90.57 Aligned_cols=133 Identities=22% Similarity=0.387 Sum_probs=87.6
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
++..++........ .++||+|||||..+..+-.. ..+.+|+|+|..|++.|.+. ++-+ ++.++|+
T Consensus 113 ~l~emI~~~~~g~F--~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea----- 177 (287)
T COG4976 113 LLAEMIGKADLGPF--RRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEA----- 177 (287)
T ss_pred HHHHHHHhccCCcc--ceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc----cchH--HHHHHHH-----
Confidence 34444444443323 78999999999999988777 56899999999999998764 2111 2233443
Q ss_pred ccccCcCcCCCCeeEEEEc--CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc--
Q psy7093 205 VKNLQPDLLEQKFDLVVSN--PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-- 280 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~N--PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-- 280 (322)
...+. .....+||+|++- .||.-. +..++--+..+|+|||.+.|.+.
T Consensus 178 ~~Fl~-~~~~er~DLi~AaDVl~YlG~----------------------------Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 178 VLFLE-DLTQERFDLIVAADVLPYLGA----------------------------LEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred HHHhh-hccCCcccchhhhhHHHhhcc----------------------------hhhHHHHHHHhcCCCceEEEEeccc
Confidence 11111 1245689999983 344321 23678888999999999998651
Q ss_pred ---------CC-----CHHHHHHHHHHcCCCCceeeEEE
Q psy7093 281 ---------HD-----HLDKIKEWLGICGHHMKLKLVEN 305 (322)
Q Consensus 281 ---------~~-----~~~~~~~~l~~~~~~~~~~~v~~ 305 (322)
+. ....++..+...| |..+++
T Consensus 229 ~~~~~f~l~ps~RyAH~~~YVr~~l~~~G----l~~i~~ 263 (287)
T COG4976 229 PDDGGFVLGPSQRYAHSESYVRALLAASG----LEVIAI 263 (287)
T ss_pred CCCCCeecchhhhhccchHHHHHHHHhcC----ceEEEe
Confidence 11 1466888888876 555544
No 200
>KOG0820|consensus
Probab=98.77 E-value=4.3e-08 Score=86.65 Aligned_cols=94 Identities=30% Similarity=0.416 Sum_probs=76.3
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+++.+++...... +..|||+|.|||.++..+... +++|+|+|+++.++....+..+....+++.+++.+|+
T Consensus 45 ~v~~~I~~ka~~k~--tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~---- 116 (315)
T KOG0820|consen 45 LVIDQIVEKADLKP--TDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDF---- 116 (315)
T ss_pred HHHHHHHhccCCCC--CCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccc----
Confidence 45566666655553 379999999999999999998 8999999999999998888877666668899999999
Q ss_pred cccccCcCcCCCCeeEEEEcCCCCCCCC
Q psy7093 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLD 231 (322)
Q Consensus 204 ~~~~l~~~~~~~~fDlIv~NPPy~~~~~ 231 (322)
+.. +...||.+|+|-||--+..
T Consensus 117 -lK~-----d~P~fd~cVsNlPyqISSp 138 (315)
T KOG0820|consen 117 -LKT-----DLPRFDGCVSNLPYQISSP 138 (315)
T ss_pred -ccC-----CCcccceeeccCCccccCH
Confidence 432 3357999999999965443
No 201
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=98.75 E-value=8.4e-08 Score=87.72 Aligned_cols=145 Identities=19% Similarity=0.157 Sum_probs=103.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+..|||+|+|.|.=+..++...+ ...+++.|+++..+...+.|+++.|..+ +.+...|. ....+ ......||
T Consensus 86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~-----~~~~~-~~~~~~fd 158 (283)
T PF01189_consen 86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADA-----RKLDP-KKPESKFD 158 (283)
T ss_dssp TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHH-----HHHHH-HHHTTTEE
T ss_pred cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeecc-----ccccc-cccccccc
Confidence 37899999999999999999876 6799999999999999999999999875 77777776 22211 11234699
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccC----ccCcEEEEEEcC----CCHHHHHHH
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL----KPNGSIFLETNH----DHLDKIKEW 290 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~L----k~gG~l~~e~~~----~~~~~~~~~ 290 (322)
.|+.++|-.....+..-+.-.....|..- +.=..+-+++++.+.+++ +|||.+++.++. .....+..+
T Consensus 159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~----~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~f 234 (283)
T PF01189_consen 159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDI----EKLAELQREILDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKF 234 (283)
T ss_dssp EEEEECSCCCGGGTTTCTTHHHHE-TTHH----HHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHH
T ss_pred hhhcCCCccchhhhhhccchhhccccccc----chHHHHHHHHHHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHH
Confidence 99999998776544432221111111000 000233579999999999 999999998863 446677778
Q ss_pred HHHcC
Q psy7093 291 LGICG 295 (322)
Q Consensus 291 l~~~~ 295 (322)
++++.
T Consensus 235 l~~~~ 239 (283)
T PF01189_consen 235 LKRHP 239 (283)
T ss_dssp HHHST
T ss_pred HHhCC
Confidence 88763
No 202
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=98.75 E-value=1.1e-07 Score=81.33 Aligned_cols=138 Identities=14% Similarity=0.166 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC--CEEEEEeCCHHHHHHHHHHHHHc-------------
Q psy7093 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK--LKAIAIDQSKHACDLTEQNAVMH------------- 186 (322)
Q Consensus 122 te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~--~~v~~vDis~~al~~A~~n~~~~------------- 186 (322)
..++.+..+..+... .+-++.|.|||+|++...+.-.++. ..|+|.|+++++++.|++|+..+
T Consensus 36 AsEi~qR~l~~l~~~--~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~ 113 (246)
T PF11599_consen 36 ASEIFQRALHYLEGK--GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELR 113 (246)
T ss_dssp HHHHHHHHHCTSSS---S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCC--CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHH
Confidence 344445555555443 2378999999999998888877554 48999999999999999994322
Q ss_pred ----------------------------CCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChh
Q psy7093 187 ----------------------------NVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPE 238 (322)
Q Consensus 187 ----------------------------~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~ 238 (322)
|-.....+.+.|++++....... .....|+||.+-||....++..
T Consensus 114 ~~~e~~~kps~~eAl~sA~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~---~~~~~diViTDlPYG~~t~W~g---- 186 (246)
T PF11599_consen 114 ELYEQYGKPSHAEALESADRLRERLAAEGGDEPHAIFRADVFDPSPLAVLD---AGFTPDIVITDLPYGEMTSWQG---- 186 (246)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHTTSS--EEEEE--TT-HHHHHHHH---TT---SEEEEE--CCCSSSTTS----
T ss_pred HHHHHcCCchHHHHHHHHHHHHHHHHhcCCCCchhheeecccCCchhhhhc---cCCCCCEEEecCCCcccccccC----
Confidence 11112567888884433322221 2234699999999987666432
Q ss_pred hhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 239 IALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 239 v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
+.+-+-...++......|-+++++++ +...
T Consensus 187 -------------~~~~~p~~~ml~~l~~vLp~~sVV~v-~~k~ 216 (246)
T PF11599_consen 187 -------------EGSGGPVAQMLNSLAPVLPERSVVAV-SDKG 216 (246)
T ss_dssp ----------------HHHHHHHHHHHHCCS-TT-EEEE-EESS
T ss_pred -------------CCCCCcHHHHHHHHHhhCCCCcEEEE-ecCC
Confidence 12222357899999999944444444 4433
No 203
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=98.73 E-value=4.6e-07 Score=79.49 Aligned_cols=131 Identities=21% Similarity=0.358 Sum_probs=80.4
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+++||-+|-. =..++++|...+..+|+.+|+++..++..++.+++.|++ ++.++.|+ ..++|..+ .++||+
T Consensus 45 gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~Dl-----R~~LP~~~-~~~fD~ 115 (243)
T PF01861_consen 45 GKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDL-----RDPLPEEL-RGKFDV 115 (243)
T ss_dssp T-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---T-----TS---TTT-SS-BSE
T ss_pred CCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecc-----cccCCHHH-hcCCCE
Confidence 4789988844 355566666556789999999999999999999999987 99999999 66676533 479999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc-EEEEEEcCCC--H---HHHHHHHHH
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG-SIFLETNHDH--L---DKIKEWLGI 293 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG-~l~~e~~~~~--~---~~~~~~l~~ 293 (322)
+++||||-..+ ...|+.++...||..| ..++-++... . ..+++.+.+
T Consensus 116 f~TDPPyT~~G---------------------------~~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~ 168 (243)
T PF01861_consen 116 FFTDPPYTPEG---------------------------LKLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLE 168 (243)
T ss_dssp EEE---SSHHH---------------------------HHHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHT
T ss_pred EEeCCCCCHHH---------------------------HHHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHH
Confidence 99999996522 4688999999999766 6677776654 2 246666665
Q ss_pred cCCCCceeeEEEecCCC
Q psy7093 294 CGHHMKLKLVENYKDFN 310 (322)
Q Consensus 294 ~~~~~~~~~v~~~~D~~ 310 (322)
.| |..-.++.|++
T Consensus 169 ~g----l~i~dii~~Fn 181 (243)
T PF01861_consen 169 MG----LVITDIIPDFN 181 (243)
T ss_dssp S------EEEEEEEEEE
T ss_pred CC----cCHHHHHhhhc
Confidence 54 56666666654
No 204
>PRK04148 hypothetical protein; Provisional
Probab=98.73 E-value=6.9e-08 Score=77.69 Aligned_cols=83 Identities=19% Similarity=0.375 Sum_probs=61.5
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhH-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGA-ITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~-~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
.+.+.+.+.+.... +.+|+|+|||+|. ++..+++. +..|+++|+++.+++.|+++. +.++.+|+
T Consensus 3 ~i~~~l~~~~~~~~--~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~--------~~~v~dDl--- 67 (134)
T PRK04148 3 TIAEFIAENYEKGK--NKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLG--------LNAFVDDL--- 67 (134)
T ss_pred HHHHHHHHhccccc--CCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhC--------CeEEECcC---
Confidence 35556666554432 3789999999995 88888876 789999999999988887652 67899999
Q ss_pred ccccccCcCcCCCCeeEEEE-cCC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVS-NPP 225 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~-NPP 225 (322)
+++-.. .-..+|+|.+ +||
T Consensus 68 --f~p~~~--~y~~a~liysirpp 87 (134)
T PRK04148 68 --FNPNLE--IYKNAKLIYSIRPP 87 (134)
T ss_pred --CCCCHH--HHhcCCEEEEeCCC
Confidence 554221 2356899988 665
No 205
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.72 E-value=7.6e-08 Score=89.65 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=74.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCcEEEEEccCCCcccccc-c
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN---------VANQLQVFHAEIDSKGQVKN-L 208 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~---------l~~~i~~~~~D~~~~~~~~~-l 208 (322)
++.+|||+|||-|.-..-.... +-..++|+|++..+++.|++..+... ..-...++.+|. +.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~-----f~~~l 135 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADC-----FSESL 135 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTT-----CCSHH
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccc-----ccchh
Confidence 3479999999988766666555 45799999999999999999883321 011256788887 322 1
Q ss_pred CcCcCC--CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 209 QPDLLE--QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 209 ~~~~~~--~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
...+.. .+||+|-|....+..- |.. +-.+.+++.+..+|+|||+++..+..
T Consensus 136 ~~~~~~~~~~FDvVScQFalHY~F------------ese----------~~ar~~l~Nvs~~Lk~GG~FIgT~~d 188 (331)
T PF03291_consen 136 REKLPPRSRKFDVVSCQFALHYAF------------ESE----------EKARQFLKNVSSLLKPGGYFIGTTPD 188 (331)
T ss_dssp HCTSSSTTS-EEEEEEES-GGGGG------------SSH----------HHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred hhhccccCCCcceeehHHHHHHhc------------CCH----------HHHHHHHHHHHHhcCCCCEEEEEecC
Confidence 111222 5899999965544322 111 12578999999999999999886643
No 206
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.71 E-value=2.1e-07 Score=83.39 Aligned_cols=123 Identities=21% Similarity=0.330 Sum_probs=86.9
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC---CCCcEEEEEccCCCcccccccCcCcCCC-
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN---VANQLQVFHAEIDSKGQVKNLQPDLLEQ- 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~---l~~~i~~~~~D~~~~~~~~~l~~~~~~~- 215 (322)
+.+||=+|.|.|..+..+.+..+..+|+.||+++..++.|++-..... -..|++++.+|. ...+.. ...
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg-----~~~l~~--~~~~ 149 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDG-----RKFLKE--TQEE 149 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTH-----HHHHHT--SSST
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhh-----HHHHHh--ccCC
Confidence 489999999999999999987556899999999999999998765432 146899999998 555543 223
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc--CCCHHHHHHHH
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN--HDHLDKIKEWL 291 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~--~~~~~~~~~~l 291 (322)
+||+|+.+.+- +... ...|+ -+.+++.+.+.|+|||++++..+ ..+...+..+.
T Consensus 150 ~yDvIi~D~~d-p~~~-------------~~~l~--------t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~ 205 (246)
T PF01564_consen 150 KYDVIIVDLTD-PDGP-------------APNLF--------TREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSIL 205 (246)
T ss_dssp -EEEEEEESSS-TTSC-------------GGGGS--------SHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHH
T ss_pred cccEEEEeCCC-CCCC-------------ccccc--------CHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHH
Confidence 89999997653 1111 00011 35788999999999999998764 34455544443
No 207
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1e-07 Score=85.11 Aligned_cols=91 Identities=26% Similarity=0.345 Sum_probs=71.4
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
+++.+++...... +..|||+|+|.|.++..+++. ..+|+++|+++..+...++... ..++++++++|+
T Consensus 18 v~~kIv~~a~~~~--~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~Da----- 85 (259)
T COG0030 18 VIDKIVEAANISP--GDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDA----- 85 (259)
T ss_pred HHHHHHHhcCCCC--CCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCch-----
Confidence 4567777666543 379999999999999999999 6789999999999998887654 245699999999
Q ss_pred ccccCcCcCCC-CeeEEEEcCCCCCCC
Q psy7093 205 VKNLQPDLLEQ-KFDLVVSNPPYVPSL 230 (322)
Q Consensus 205 ~~~l~~~~~~~-~fDlIv~NPPy~~~~ 230 (322)
+..- ++.- .++.||+|.||.-+.
T Consensus 86 Lk~d---~~~l~~~~~vVaNlPY~Iss 109 (259)
T COG0030 86 LKFD---FPSLAQPYKVVANLPYNISS 109 (259)
T ss_pred hcCc---chhhcCCCEEEEcCCCcccH
Confidence 4432 1111 689999999997655
No 208
>PRK10742 putative methyltransferase; Provisional
Probab=98.69 E-value=2e-07 Score=82.47 Aligned_cols=93 Identities=13% Similarity=0.254 Sum_probs=73.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------C--CCCcEEEEEccCCCcccccccCcCc
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH------N--VANQLQVFHAEIDSKGQVKNLQPDL 212 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~------~--l~~~i~~~~~D~~~~~~~~~l~~~~ 212 (322)
.+|||+.+|+|..++.++.. +++|+++|.++.+..+.+.|+++. + +..+++++++|. .+.+..
T Consensus 90 p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da-----~~~L~~-- 160 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS-----LTALTD-- 160 (250)
T ss_pred CEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcH-----HHHHhh--
Confidence 48999999999999999998 778999999999999999999874 2 225799999998 666643
Q ss_pred CCCCeeEEEEcCCCCCCCCCCCCChhhhcc
Q psy7093 213 LEQKFDLVVSNPPYVPSLDIPKLEPEIALY 242 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ 242 (322)
....||+|+.+|||.....-..-..+.+.|
T Consensus 161 ~~~~fDVVYlDPMfp~~~ksa~vkk~mr~~ 190 (250)
T PRK10742 161 ITPRPQVVYLDPMFPHKQKSALVKKEMRVF 190 (250)
T ss_pred CCCCCcEEEECCCCCCCccccchhhhHHHH
Confidence 234799999999998765433333444433
No 209
>KOG3010|consensus
Probab=98.62 E-value=7.5e-08 Score=83.85 Aligned_cols=105 Identities=15% Similarity=0.199 Sum_probs=68.7
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..++|+|||+|..++.+|..+ .+|+|+|+|+.+|+.|++.-.........++...+. ..+.. .+++.|+|
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~------v~L~g--~e~SVDlI 104 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEM------VDLLG--GEESVDLI 104 (261)
T ss_pred ceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcCCCcccccCCcccccccc------ccccC--CCcceeee
Confidence 489999999998888888884 579999999999999886432111111122222222 22211 26789999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~ 282 (322)
++--..+... ..++.+.+.++||+.|-++..-+++
T Consensus 105 ~~Aqa~HWFd---------------------------le~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 105 TAAQAVHWFD---------------------------LERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred hhhhhHHhhc---------------------------hHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 9844333322 4589999999999888444434443
No 210
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.62 E-value=5.9e-07 Score=81.68 Aligned_cols=110 Identities=20% Similarity=0.308 Sum_probs=86.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN--V-ANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~--l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++||-+|.|.|..+..+++..+..+++.||+++..++++++-+.... . ..|++++..|. .+.+.. ...+|
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg-----~~~v~~--~~~~f 150 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG-----VEFLRD--CEEKF 150 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH-----HHHHHh--CCCcC
Confidence 69999999999999999999888899999999999999998775432 2 47899999998 666543 23389
Q ss_pred eEEEEcC--CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 218 DLVVSNP--PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 218 DlIv~NP--Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
|+|++|- |-. |-.+|+ -..+++.+.+.|+++|+++...+.
T Consensus 151 DvIi~D~tdp~g----------------p~~~Lf--------t~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 151 DVIIVDSTDPVG----------------PAEALF--------TEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred CEEEEcCCCCCC----------------cccccC--------CHHHHHHHHHhcCCCcEEEEecCC
Confidence 9999952 211 111222 347899999999999999998554
No 211
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.55 E-value=6.5e-07 Score=80.74 Aligned_cols=126 Identities=21% Similarity=0.303 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhcc-CCCCCCeEEEEcCchh----HHHHHHHHhCC-----CCEEEEEeCCHHHHHHHHHHHHH-----cC
Q psy7093 123 EELIDIITDKLES-SNHTPTRMIEIGSGTG----AITISLLKHFP-----KLKAIAIDQSKHACDLTEQNAVM-----HN 187 (322)
Q Consensus 123 e~lv~~i~~~~~~-~~~~~~~iLDlg~GsG----~~~~~la~~~~-----~~~v~~vDis~~al~~A~~n~~~-----~~ 187 (322)
+.+.+.++..+.. ....+.+|+-.||+|| .+++.+...++ ..+|+|+|+|..+++.|+.-... -+
T Consensus 79 ~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~ 158 (268)
T COG1352 79 EELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRG 158 (268)
T ss_pred HHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhcc
Confidence 4555666654432 2113479999999999 77888887775 47999999999999999863211 11
Q ss_pred C-----------------------CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccc
Q psy7093 188 V-----------------------ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYED 244 (322)
Q Consensus 188 l-----------------------~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep 244 (322)
+ ...|.|.+.|+ +...+ ..+.||+|+|=- .+-.++.+.
T Consensus 159 ~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NL-----l~~~~---~~~~fD~IfCRN------VLIYFd~~~----- 219 (268)
T COG1352 159 LPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNL-----LDDSP---FLGKFDLIFCRN------VLIYFDEET----- 219 (268)
T ss_pred CCHHHHhhhEeecCCCcEEEChHHhcccEEeecCC-----CCCcc---ccCCCCEEEEcc------eEEeeCHHH-----
Confidence 1 12467777787 43321 356899999921 222222332
Q ss_pred cccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 245 IKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 245 ~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
-+++++.....|+|||+|++-..
T Consensus 220 -------------q~~il~~f~~~L~~gG~LflG~s 242 (268)
T COG1352 220 -------------QERILRRFADSLKPGGLLFLGHS 242 (268)
T ss_pred -------------HHHHHHHHHHHhCCCCEEEEccC
Confidence 35899999999999999998443
No 212
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.55 E-value=4e-07 Score=83.09 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=74.6
Q ss_pred CeEEEEcCchh----HHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHH--------------------------c
Q psy7093 141 TRMIEIGSGTG----AITISLLKHFP----KLKAIAIDQSKHACDLTEQNAVM--------------------------H 186 (322)
Q Consensus 141 ~~iLDlg~GsG----~~~~~la~~~~----~~~v~~vDis~~al~~A~~n~~~--------------------------~ 186 (322)
.+|+..||+|| .+++.+....+ ..+|+|+|+|+.+++.|++-... +
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 79999999999 45555555332 36899999999999999876211 0
Q ss_pred ----CCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHH
Q psy7093 187 ----NVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC 262 (322)
Q Consensus 187 ----~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l 262 (322)
.+.++|+|.+.|+ ++... ...++||+|+|.--++.. +++ .-++++
T Consensus 197 ~v~~~lr~~V~F~~~NL-----~~~~~--~~~~~fD~I~cRNvliyF------~~~------------------~~~~vl 245 (287)
T PRK10611 197 RVRQELANYVDFQQLNL-----LAKQW--AVPGPFDAIFCRNVMIYF------DKT------------------TQERIL 245 (287)
T ss_pred EEChHHHccCEEEcccC-----CCCCC--ccCCCcceeeHhhHHhcC------CHH------------------HHHHHH
Confidence 0124578888888 44210 124789999994332221 111 145899
Q ss_pred HHHhccCccCcEEEEEEc
Q psy7093 263 VFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 263 ~~~~~~Lk~gG~l~~e~~ 280 (322)
+...+.|+|||+|++-+.
T Consensus 246 ~~l~~~L~pgG~L~lG~s 263 (287)
T PRK10611 246 RRFVPLLKPDGLLFAGHS 263 (287)
T ss_pred HHHHHHhCCCcEEEEeCc
Confidence 999999999999887553
No 213
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.55 E-value=2.1e-06 Score=79.01 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=128.2
Q ss_pred CCceeEecceeecCeEEEeCCCCcccCchhHHHHHHH----HHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEE
Q psy7093 93 MPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDII----TDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAI 167 (322)
Q Consensus 93 ~p~~yi~g~~~f~~~~~~v~~~~~iprp~te~lv~~i----~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~ 167 (322)
.|.|-|.-+.+=.+++++.+.+-.+...+.....+.+ ++.++.. .++|=+|.|.|.....+.+. | --+|+
T Consensus 243 spYQ~iVvTr~g~d~rLYldG~LQfsTrDe~RYhEsLV~pals~~~~a----~~vLvlGGGDGLAlRellky-P~~~qI~ 317 (508)
T COG4262 243 SPYQRIVVTRRGDDLRLYLDGGLQFSTRDEYRYHESLVYPALSSVRGA----RSVLVLGGGDGLALRELLKY-PQVEQIT 317 (508)
T ss_pred CccceEEEEEecCceEEEEcCceeeeechhhhhhheeeeccccccccc----ceEEEEcCCchHHHHHHHhC-CCcceEE
Confidence 4555555555455777888777655333333333332 2222222 68999999999999998876 7 46899
Q ss_pred EEeCCHHHHHHHHHHHHHc--C---C-CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhc
Q psy7093 168 AIDQSKHACDLTEQNAVMH--N---V-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIAL 241 (322)
Q Consensus 168 ~vDis~~al~~A~~n~~~~--~---l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~ 241 (322)
-||++|.+++.+++|.... + + +.|++++..|+ +..+.. ....||.||.+.|-.....+..+-
T Consensus 318 lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDA-----f~wlr~--a~~~fD~vIVDl~DP~tps~~rlY----- 385 (508)
T COG4262 318 LVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDA-----FQWLRT--AADMFDVVIVDLPDPSTPSIGRLY----- 385 (508)
T ss_pred EEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccH-----HHHHHh--hcccccEEEEeCCCCCCcchhhhh-----
Confidence 9999999999999775332 1 1 35899999999 777754 345899999988755544432221
Q ss_pred ccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC-----HHHHHHHHHHcCCCCceeeEEEecCCCCCCeEE
Q psy7093 242 YEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH-----LDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316 (322)
Q Consensus 242 ~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~-----~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~ 316 (322)
-..+...+.+.|+++|.+++.-+... .-.+...+++.|+ .-....++---+|..-|+
T Consensus 386 ----------------S~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG~--~~~Pyhv~VPTFGeWGf~ 447 (508)
T COG4262 386 ----------------SVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAGY--RVWPYHVHVPTFGEWGFI 447 (508)
T ss_pred ----------------hHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCcc--eeeeeEEecCccccccee
Confidence 12566678899999999999876432 2345666777764 223345555667777777
Q ss_pred EEEE
Q psy7093 317 ELKL 320 (322)
Q Consensus 317 ~~~~ 320 (322)
.+.+
T Consensus 448 l~~~ 451 (508)
T COG4262 448 LAAP 451 (508)
T ss_pred eccc
Confidence 6654
No 214
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.52 E-value=4.9e-06 Score=67.41 Aligned_cols=107 Identities=21% Similarity=0.257 Sum_probs=73.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCC-hhhhccc
Q psy7093 165 KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLE-PEIALYE 243 (322)
Q Consensus 165 ~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~-~~v~~~e 243 (322)
+|+|.||.+.|++.+++.++..++.+++++++.+- +.+....+.+++|+++.|.-|.|.+|..-.. ++.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sH------e~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~T---- 70 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSH------ENLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPET---- 70 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-G------GGGGGT--S--EEEEEEEESB-CTS-TTSB--HHH----
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCH------HHHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHH----
Confidence 69999999999999999999999888999998775 3333333345899999999999988754221 111
Q ss_pred ccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC------HHHHHHHHHHcC
Q psy7093 244 DIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH------LDKIKEWLGICG 295 (322)
Q Consensus 244 p~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~------~~~~~~~l~~~~ 295 (322)
.-..++.+.++|+|||.+.+.+-+++ .+.+.+++..-.
T Consensus 71 --------------Tl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 71 --------------TLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLD 114 (140)
T ss_dssp --------------HHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-
T ss_pred --------------HHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCC
Confidence 33788999999999999988775544 344666666643
No 215
>KOG2912|consensus
Probab=98.52 E-value=2.7e-06 Score=76.86 Aligned_cols=120 Identities=21% Similarity=0.298 Sum_probs=89.4
Q ss_pred cCeEEEeCCCCcccC-chhHHHHHHHHHHhccCCCCCCe---EEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPR-SETEELIDIITDKLESSNHTPTR---MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 105 ~~~~~~v~~~~~ipr-p~te~lv~~i~~~~~~~~~~~~~---iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+|+...+.++-+.|+ |..-.++.++-+.+........+ =+|||+|.-|+--.+.....++...++|++...+..|+
T Consensus 64 fgl~veiP~grLcPtVPnR~nYihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~ 143 (419)
T KOG2912|consen 64 FGLSVEIPLGRLCPTVPNRLNYIHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAK 143 (419)
T ss_pred cCceEecCccccCCCCccchhhHHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhh
Confidence 467888889999986 66666677776666543221223 48999999999888877767789999999999999999
Q ss_pred HHHHHcCCCCcEEEEEccCCCcccccc-cCc---CcCCCCeeEEEEcCCCCCC
Q psy7093 181 QNAVMHNVANQLQVFHAEIDSKGQVKN-LQP---DLLEQKFDLVVSNPPYVPS 229 (322)
Q Consensus 181 ~n~~~~~l~~~i~~~~~D~~~~~~~~~-l~~---~~~~~~fDlIv~NPPy~~~ 229 (322)
.|+..++++.++.+++... ... +.+ ..++..||.+.|||||...
T Consensus 144 snV~qn~lss~ikvV~~~~-----~ktll~d~~~~~~e~~ydFcMcNPPFfe~ 191 (419)
T KOG2912|consen 144 SNVEQNNLSSLIKVVKVEP-----QKTLLMDALKEESEIIYDFCMCNPPFFEN 191 (419)
T ss_pred ccccccccccceeeEEecc-----hhhcchhhhccCccceeeEEecCCchhhc
Confidence 9999999988888877643 111 111 1123469999999999865
No 216
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.51 E-value=3.8e-07 Score=78.74 Aligned_cols=126 Identities=21% Similarity=0.283 Sum_probs=71.6
Q ss_pred HHHHHHHHH-Hhcc-CCCCCCeEEEEcCchh----HHHHHHHHhC----C-CCEEEEEeCCHHHHHHHHHHH--------
Q psy7093 123 EELIDIITD-KLES-SNHTPTRMIEIGSGTG----AITISLLKHF----P-KLKAIAIDQSKHACDLTEQNA-------- 183 (322)
Q Consensus 123 e~lv~~i~~-~~~~-~~~~~~~iLDlg~GsG----~~~~~la~~~----~-~~~v~~vDis~~al~~A~~n~-------- 183 (322)
+.+.+.++. .+.. ....+.+|+..||+|| .+++.+.... + ..+|+|+|+|+.+++.|++-.
T Consensus 13 ~~l~~~vlp~~~~~~~~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~ 92 (196)
T PF01739_consen 13 EALRDEVLPPLLARARPGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRG 92 (196)
T ss_dssp HHHHHHHH-------CS-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTT
T ss_pred HHHHHHHHHhhccccCCCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhh
Confidence 445556662 3322 1124479999999999 4555555521 1 369999999999999998641
Q ss_pred ------HHc-----C--------CCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccc
Q psy7093 184 ------VMH-----N--------VANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYED 244 (322)
Q Consensus 184 ------~~~-----~--------l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep 244 (322)
+++ + +.++|+|.+.|+ ++.. ...+.||+|+|.--.+. ..++.
T Consensus 93 ~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL-----~~~~---~~~~~fD~I~CRNVlIY------F~~~~----- 153 (196)
T PF01739_consen 93 LPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNL-----LDPD---PPFGRFDLIFCRNVLIY------FDPET----- 153 (196)
T ss_dssp S-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--T-----T-S---------EEEEEE-SSGGG------S-HHH-----
T ss_pred hHHHHHHHhccccCCCceeEChHHcCceEEEeccc-----CCCC---cccCCccEEEecCEEEE------eCHHH-----
Confidence 111 0 113688999998 5511 24578999999433222 22222
Q ss_pred cccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 245 IKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 245 ~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
-+++++...+.|+|||+|++-..
T Consensus 154 -------------~~~vl~~l~~~L~pgG~L~lG~s 176 (196)
T PF01739_consen 154 -------------QQRVLRRLHRSLKPGGYLFLGHS 176 (196)
T ss_dssp -------------HHHHHHHHGGGEEEEEEEEE-TT
T ss_pred -------------HHHHHHHHHHHcCCCCEEEEecC
Confidence 46899999999999999998443
No 217
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.50 E-value=3.5e-07 Score=83.70 Aligned_cols=93 Identities=22% Similarity=0.250 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
..+++.+++.+...+ +..++|.+||.|..+..+++.++ ..+|+|+|.++.+++.|++++.. .++++++++|.
T Consensus 5 pVll~Evl~~L~~~p--g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f-- 77 (296)
T PRK00050 5 PVLLDEVVDALAIKP--DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNF-- 77 (296)
T ss_pred cccHHHHHHhhCCCC--CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCH--
Confidence 346677777776542 37999999999999999999985 68999999999999999988754 35799999997
Q ss_pred cccccccCcCcCC--CCeeEEEEcCCC
Q psy7093 202 KGQVKNLQPDLLE--QKFDLVVSNPPY 226 (322)
Q Consensus 202 ~~~~~~l~~~~~~--~~fDlIv~NPPy 226 (322)
..+...... .++|.|+.|.-+
T Consensus 78 ----~~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 78 ----SNLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred ----HHHHHHHHcCCCccCEEEECCCc
Confidence 222111111 279999887653
No 218
>KOG1661|consensus
Probab=98.50 E-value=7.3e-07 Score=76.15 Aligned_cols=137 Identities=14% Similarity=0.207 Sum_probs=90.1
Q ss_pred ecCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC--CCEEEEEeCCHHHHHHHHH
Q psy7093 104 FRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP--KLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 104 f~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~--~~~v~~vDis~~al~~A~~ 181 (322)
+.+..++.+-++-+..|. +...+++.+...-.++.++||+|+|||+++..++.... +..++|+|.-++.++.+++
T Consensus 50 y~d~pq~~G~n~~iSAp~---mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~ 126 (237)
T KOG1661|consen 50 YMDSPQKIGYNLTISAPH---MHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKK 126 (237)
T ss_pred CCCCccccCCceEEcchH---HHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHH
Confidence 344444444344443444 34445555543222347899999999999998886543 3345999999999999999
Q ss_pred HHHHcCC---------CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCC
Q psy7093 182 NAVMHNV---------ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH 252 (322)
Q Consensus 182 n~~~~~l---------~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~ 252 (322)
|+...-- ..++.++.+|. ....+ +..+||.|.+-. .
T Consensus 127 nl~k~i~~~e~~~~~~~~~l~ivvGDg-----r~g~~---e~a~YDaIhvGA------a--------------------- 171 (237)
T KOG1661|consen 127 NLDKDITTSESSSKLKRGELSIVVGDG-----RKGYA---EQAPYDAIHVGA------A--------------------- 171 (237)
T ss_pred HHHhhccCchhhhhhccCceEEEeCCc-----cccCC---ccCCcceEEEcc------C---------------------
Confidence 9876531 23578888887 33322 456899998831 0
Q ss_pred ChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 253 DGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 253 ~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
...+.+...+.|++||.+++-.+..+
T Consensus 172 -----a~~~pq~l~dqL~~gGrllip~~~~~ 197 (237)
T KOG1661|consen 172 -----ASELPQELLDQLKPGGRLLIPVGQDG 197 (237)
T ss_pred -----ccccHHHHHHhhccCCeEEEeecccC
Confidence 01344556778999999999877644
No 219
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.48 E-value=5.3e-07 Score=76.91 Aligned_cols=146 Identities=18% Similarity=0.314 Sum_probs=86.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcC--CCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLL--EQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~--~~~ 216 (322)
+.+|||+||+.|.++..++.+. +..+|+|+|+.+. ... ..+.++++|+++......+...+. ..+
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPL-QNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS--TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccc-cceeeeecccchhhHHHhhhhhccccccC
Confidence 3799999999999999999985 4689999999875 111 236777788744332222222222 268
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc--CCCHHHHHHHHHHc
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN--HDHLDKIKEWLGIC 294 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~--~~~~~~~~~~l~~~ 294 (322)
+|+|+|+--...... ...+.. .-++.....+..+..+|+|||.+++-+- ... ..+...+...
T Consensus 92 ~dlv~~D~~~~~~g~-~~~d~~--------------~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~-~~~~~~l~~~ 155 (181)
T PF01728_consen 92 FDLVLSDMAPNVSGD-RNIDEF--------------ISIRLILSQLLLALELLKPGGTFVIKVFKGPEI-EELIYLLKRC 155 (181)
T ss_dssp ESEEEE-------SS-HHSSHH--------------HHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS-HHHHHHHHHH
T ss_pred cceeccccccCCCCc-hhhHHH--------------HHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH-HHHHHHHHhC
Confidence 999999752111111 001111 1134456667778889999998887653 233 3666666653
Q ss_pred CCCCceeeEEEecCCC----CCCeEEEE
Q psy7093 295 GHHMKLKLVENYKDFN----NKDRFVEL 318 (322)
Q Consensus 295 ~~~~~~~~v~~~~D~~----g~~R~~~~ 318 (322)
|..+.+.+-.. +.++++++
T Consensus 156 -----F~~v~~~Kp~~sr~~s~E~Ylv~ 178 (181)
T PF01728_consen 156 -----FSKVKIVKPPSSRSESSEEYLVC 178 (181)
T ss_dssp -----HHHEEEEE-TTSBTTCBEEEEES
T ss_pred -----CeEEEEEECcCCCCCccEEEEEE
Confidence 67777766543 44555443
No 220
>KOG2671|consensus
Probab=98.47 E-value=3.2e-07 Score=83.56 Aligned_cols=129 Identities=18% Similarity=0.146 Sum_probs=89.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHH-------HHHHHHHHcCCCCc-EEEEEccCCCcccccccCc
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACD-------LTEQNAVMHNVANQ-LQVFHAEIDSKGQVKNLQP 210 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~-------~A~~n~~~~~l~~~-i~~~~~D~~~~~~~~~l~~ 210 (322)
+++.|+|...|||.+.++.|.. ++.|+|.||+-.++. -.+.|.+++|...+ +.++.+|.. .. +
T Consensus 208 pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~s-----n~-~- 278 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFS-----NP-P- 278 (421)
T ss_pred CCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeeccc-----Cc-c-
Confidence 4478999999999999999887 899999999998887 34678888885433 466777861 11 1
Q ss_pred CcCCCCeeEEEEcCCCCCCCCCCCCC----------hhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 211 DLLEQKFDLVVSNPPYVPSLDIPKLE----------PEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 211 ~~~~~~fDlIv~NPPy~~~~~~~~l~----------~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
......||.|||+|||.-.+...... .....|-|....+ .=.+++..++..+.+.|..||.+++=+
T Consensus 279 ~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~y---sl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 279 LRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQY---SLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred hhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchh---HHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 12356899999999997644332221 1112222322211 113557788999999999999998844
No 221
>PRK00536 speE spermidine synthase; Provisional
Probab=98.44 E-value=8.6e-06 Score=73.32 Aligned_cols=146 Identities=8% Similarity=-0.036 Sum_probs=94.5
Q ss_pred eeecCeEEEeCCCCcccCchhH-HHH-HHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHH
Q psy7093 102 WNFRDLTLKMTPPVFIPRSETE-ELI-DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLT 179 (322)
Q Consensus 102 ~~f~~~~~~v~~~~~iprp~te-~lv-~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A 179 (322)
...+|.-+..+ ++.. .+.. -+. |.+....-.....+++||=+|.|-|..+..+++. | .+|+.||+++..++.+
T Consensus 36 s~~fGr~LvLD-~~~~--te~dEfiYHEmLvHppl~~h~~pk~VLIiGGGDGg~~REvLkh-~-~~v~mVeID~~Vv~~~ 110 (262)
T PRK00536 36 SKDFGEIAMLN-KQLL--FKNFLHIESELLAHMGGCTKKELKEVLIVDGFDLELAHQLFKY-D-THVDFVQADEKILDSF 110 (262)
T ss_pred ccccccEEEEe-eeee--ecchhhhHHHHHHHHHHhhCCCCCeEEEEcCCchHHHHHHHCc-C-CeeEEEECCHHHHHHH
Confidence 34567777777 5553 1222 222 3332221112224589999999999999999998 4 4999999999999999
Q ss_pred HHHHHHc--CC-CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhH
Q psy7093 180 EQNAVMH--NV-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLN 256 (322)
Q Consensus 180 ~~n~~~~--~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~ 256 (322)
++..... ++ +.|++++.. + .. ...++||+||++-.|.
T Consensus 111 k~~lP~~~~~~~DpRv~l~~~-~------~~----~~~~~fDVIIvDs~~~----------------------------- 150 (262)
T PRK00536 111 ISFFPHFHEVKNNKNFTHAKQ-L------LD----LDIKKYDLIICLQEPD----------------------------- 150 (262)
T ss_pred HHHCHHHHHhhcCCCEEEeeh-h------hh----ccCCcCCEEEEcCCCC-----------------------------
Confidence 9854322 12 347777652 2 11 1236899999973211
Q ss_pred HHHHHHHHHhccCccCcEEEEEEcC--CCHHHHHHHHHHc
Q psy7093 257 IIKPICVFGSNYLKPNGSIFLETNH--DHLDKIKEWLGIC 294 (322)
Q Consensus 257 ~~~~~l~~~~~~Lk~gG~l~~e~~~--~~~~~~~~~l~~~ 294 (322)
..+.+.+.+.|+|||+++...+. -+.+.+..+.+..
T Consensus 151 --~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l 188 (262)
T PRK00536 151 --IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNM 188 (262)
T ss_pred --hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHH
Confidence 14667789999999999986543 3455555555443
No 222
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.42 E-value=3.9e-06 Score=70.26 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=55.7
Q ss_pred EEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccc
Q psy7093 167 IAIDQSKHACDLTEQNAVMHN--VANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYED 244 (322)
Q Consensus 167 ~~vDis~~al~~A~~n~~~~~--l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep 244 (322)
+|+|+|+++++.|+++....+ ..++++++++|+ ..++ +..++||+|+++--.....+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~------~~lp--~~~~~fD~v~~~~~l~~~~d------------- 59 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDA------IDLP--FDDCEFDAVTMGYGLRNVVD------------- 59 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEech------hhCC--CCCCCeeEEEecchhhcCCC-------------
Confidence 489999999999987765322 234699999998 3343 35678999999532221111
Q ss_pred cccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 245 IKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 245 ~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
...+++++.++|||||.+++
T Consensus 60 -------------~~~~l~ei~rvLkpGG~l~i 79 (160)
T PLN02232 60 -------------RLRAMKEMYRVLKPGSRVSI 79 (160)
T ss_pred -------------HHHHHHHHHHHcCcCeEEEE
Confidence 34789999999999999865
No 223
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.39 E-value=1.9e-06 Score=78.06 Aligned_cols=93 Identities=30% Similarity=0.414 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~ 202 (322)
..+++.+++.+.... +..|+|+|+|.|.++..+++. ..+++++|+++..++..++... ...+++++++|+
T Consensus 16 ~~~~~~Iv~~~~~~~--~~~VlEiGpG~G~lT~~L~~~--~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~--- 85 (262)
T PF00398_consen 16 PNIADKIVDALDLSE--GDTVLEIGPGPGALTRELLKR--GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDF--- 85 (262)
T ss_dssp HHHHHHHHHHHTCGT--TSEEEEESSTTSCCHHHHHHH--SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-T---
T ss_pred HHHHHHHHHhcCCCC--CCEEEEeCCCCccchhhHhcc--cCcceeecCcHhHHHHHHHHhh---hcccceeeecch---
Confidence 566777887776543 379999999999999999998 4899999999999988887554 345799999999
Q ss_pred ccccccCcCcCCCCeeEEEEcCCCC
Q psy7093 203 GQVKNLQPDLLEQKFDLVVSNPPYV 227 (322)
Q Consensus 203 ~~~~~l~~~~~~~~fDlIv~NPPy~ 227 (322)
++.-...........|++|.||.
T Consensus 86 --l~~~~~~~~~~~~~~vv~NlPy~ 108 (262)
T PF00398_consen 86 --LKWDLYDLLKNQPLLVVGNLPYN 108 (262)
T ss_dssp --TTSCGGGHCSSSEEEEEEEETGT
T ss_pred --hccccHHhhcCCceEEEEEeccc
Confidence 43221111124678999999994
No 224
>KOG1975|consensus
Probab=98.34 E-value=3e-06 Score=76.86 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=82.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC-CCC----cEEEEEccCCCcccccc-cCcCc--
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN-VAN----QLQVFHAEIDSKGQVKN-LQPDL-- 212 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~-l~~----~i~~~~~D~~~~~~~~~-l~~~~-- 212 (322)
..++|+|||-|.-.+-.-+. .-..++|+||.+..++.|++..+.+. ... .+.|+.+|. +.. +...+
T Consensus 119 ~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc-----~~~~l~d~~e~ 192 (389)
T KOG1975|consen 119 DDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC-----FKERLMDLLEF 192 (389)
T ss_pred cccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc-----chhHHHHhccC
Confidence 67999999999888777666 34689999999999999999876432 111 267889997 321 11111
Q ss_pred CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHH
Q psy7093 213 LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEW 290 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~ 290 (322)
...+||+|-|-..++..-+ .. +-.+.++.++..+|+|||+++-.+ ++....+..+
T Consensus 193 ~dp~fDivScQF~~HYaFe------------te----------e~ar~~l~Nva~~LkpGG~FIgTi-Pdsd~Ii~rl 247 (389)
T KOG1975|consen 193 KDPRFDIVSCQFAFHYAFE------------TE----------ESARIALRNVAKCLKPGGVFIGTI-PDSDVIIKRL 247 (389)
T ss_pred CCCCcceeeeeeeEeeeec------------cH----------HHHHHHHHHHHhhcCCCcEEEEec-CcHHHHHHHH
Confidence 2345999999766554322 11 114689999999999999988755 3433444433
No 225
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.33 E-value=9.8e-06 Score=69.72 Aligned_cols=126 Identities=21% Similarity=0.275 Sum_probs=71.1
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
++.+++++...+ +...|.|+|||.+.++.++.. ..+|+..|+-.. .+ .+..+|+
T Consensus 60 vd~iI~~l~~~~-~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva~--------------n~--~Vtacdi------ 113 (219)
T PF05148_consen 60 VDVIIEWLKKRP-KSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVAP--------------NP--RVTACDI------ 113 (219)
T ss_dssp HHHHHHHHCTS--TTS-EEEES-TT-HHHHH--S------EEEEESS-S--------------ST--TEEES-T------
T ss_pred HHHHHHHHHhcC-CCEEEEECCCchHHHHHhccc---CceEEEeeccCC--------------CC--CEEEecC------
Confidence 455666665442 236899999999999865532 357999998642 12 2456887
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE-EEcCCC-
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL-ETNHDH- 283 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~-e~~~~~- 283 (322)
..+| ++.+..|++|+......++ +..++++|.|.||+||.|++ |+.++-
T Consensus 114 a~vP--L~~~svDv~VfcLSLMGTn---------------------------~~~fi~EA~RvLK~~G~L~IAEV~SRf~ 164 (219)
T PF05148_consen 114 ANVP--LEDESVDVAVFCLSLMGTN---------------------------WPDFIREANRVLKPGGILKIAEVKSRFE 164 (219)
T ss_dssp TS-S----TT-EEEEEEES---SS----------------------------HHHHHHHHHHHEEEEEEEEEEEEGGG-S
T ss_pred ccCc--CCCCceeEEEEEhhhhCCC---------------------------cHHHHHHHHheeccCcEEEEEEecccCc
Confidence 3343 4678899999864332221 56899999999999999866 776543
Q ss_pred -HHHHHHHHHHcCCCCceeeEEEecCCCCC
Q psy7093 284 -LDKIKEWLGICGHHMKLKLVENYKDFNNK 312 (322)
Q Consensus 284 -~~~~~~~l~~~~~~~~~~~v~~~~D~~g~ 312 (322)
.+...+.++..| |... .+|....
T Consensus 165 ~~~~F~~~~~~~G----F~~~--~~d~~n~ 188 (219)
T PF05148_consen 165 NVKQFIKALKKLG----FKLK--SKDESNK 188 (219)
T ss_dssp -HHHHHHHHHCTT----EEEE--EEE--ST
T ss_pred CHHHHHHHHHHCC----CeEE--ecccCCC
Confidence 444555566654 6654 3565543
No 226
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.24 E-value=1.3e-05 Score=66.17 Aligned_cols=121 Identities=18% Similarity=0.153 Sum_probs=86.3
Q ss_pred chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 120 SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKH-FPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 120 p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~-~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
|....+.+.+...+....+ .-|||+|.|||.++-++.++ .+...++++|.|++-+....+.. ..+.++.+|
T Consensus 31 PsSs~lA~~M~s~I~pesg--lpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gd 102 (194)
T COG3963 31 PSSSILARKMASVIDPESG--LPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGD 102 (194)
T ss_pred CCcHHHHHHHHhccCcccC--CeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC------CCccccccc
Confidence 3445666777766665433 68999999999999999886 34568999999999887766432 126688898
Q ss_pred CCCccccccc--CcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 199 IDSKGQVKNL--QPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 199 ~~~~~~~~~l--~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
+ +..- -.......||.|||--|..... ..+ --++++.+...|..||.++
T Consensus 103 a-----~~l~~~l~e~~gq~~D~viS~lPll~~P------~~~------------------~iaile~~~~rl~~gg~lv 153 (194)
T COG3963 103 A-----FDLRTTLGEHKGQFFDSVISGLPLLNFP------MHR------------------RIAILESLLYRLPAGGPLV 153 (194)
T ss_pred h-----hhHHHHHhhcCCCeeeeEEeccccccCc------HHH------------------HHHHHHHHHHhcCCCCeEE
Confidence 8 3221 1123456799999988876533 111 2378999999999999876
Q ss_pred E
Q psy7093 277 L 277 (322)
Q Consensus 277 ~ 277 (322)
-
T Consensus 154 q 154 (194)
T COG3963 154 Q 154 (194)
T ss_pred E
Confidence 5
No 227
>KOG1122|consensus
Probab=98.23 E-value=1.5e-05 Score=74.78 Aligned_cols=137 Identities=15% Similarity=0.132 Sum_probs=96.5
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++.+|||+|+..|.=+.++|....+ ..|+|.|.+...++..+.|+.++|+.+ ..+.+.|. .+.....++ ++|
T Consensus 241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~-----~ef~~~~~~-~~f 313 (460)
T KOG1122|consen 241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDG-----REFPEKEFP-GSF 313 (460)
T ss_pred CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCc-----ccccccccC-ccc
Confidence 5589999999999888888887654 589999999999999999999999876 55566666 222112233 389
Q ss_pred eEEEEcCCCCCCCCCCC-----CC---hhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC----HH
Q psy7093 218 DLVVSNPPYVPSLDIPK-----LE---PEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH----LD 285 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~-----l~---~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~----~~ 285 (322)
|-|+.+.|..-..-... .. .++..|-+ +-++++..|.+++++||++++.++.-. +.
T Consensus 314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~------------LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~ 381 (460)
T KOG1122|consen 314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAH------------LQRELLLSAIDLVKAGGVLVYSTCSITVEENEA 381 (460)
T ss_pred ceeeecCCCCCCcccccccccccchhHHHHHHhHH------------HHHHHHHHHHhhccCCcEEEEEeeecchhhhHH
Confidence 99999999765333221 11 12222221 247999999999999999999887533 33
Q ss_pred HHHHHHHHc
Q psy7093 286 KIKEWLGIC 294 (322)
Q Consensus 286 ~~~~~l~~~ 294 (322)
.+.-.|.++
T Consensus 382 vV~yaL~K~ 390 (460)
T KOG1122|consen 382 VVDYALKKR 390 (460)
T ss_pred HHHHHHHhC
Confidence 344445555
No 228
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.19 E-value=3.6e-05 Score=66.39 Aligned_cols=142 Identities=15% Similarity=0.201 Sum_probs=91.7
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
..+|+|||+-.|..+..+++..+. ..|+|+|+.|-. ....+.++++|++++..++.+...+...++|
T Consensus 46 ~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 46 GMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred CCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 379999999999999999988643 469999998732 1223999999997666555554445556689
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc-CCCHHHHHHHHHHcCCC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN-HDHLDKIKEWLGICGHH 297 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~-~~~~~~~~~~l~~~~~~ 297 (322)
+|+|++-= ........+... -+.+....++.+..+|+|||.+++-+= ....+.+-..++++
T Consensus 114 vV~sD~ap-~~~g~~~~Dh~r--------------~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~~~~l~~~~~~--- 175 (205)
T COG0293 114 VVLSDMAP-NTSGNRSVDHAR--------------SMYLCELALEFALEVLKPGGSFVAKVFQGEDFEDLLKALRRL--- 175 (205)
T ss_pred eEEecCCC-CcCCCccccHHH--------------HHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCHHHHHHHHHHh---
Confidence 99997521 111111111111 123456788889999999999887542 22233344444443
Q ss_pred CceeeEEEecCCCCCC
Q psy7093 298 MKLKLVENYKDFNNKD 313 (322)
Q Consensus 298 ~~~~~v~~~~D~~g~~ 313 (322)
|..|++.+=.+.+.
T Consensus 176 --F~~v~~~KP~aSR~ 189 (205)
T COG0293 176 --FRKVKIFKPKASRK 189 (205)
T ss_pred --hceeEEecCccccC
Confidence 67788776655444
No 229
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.19 E-value=2.8e-06 Score=71.37 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=58.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..+.|+|+|||.++...|+. .-+|+++|.+|.....|++|+...|.. +++++.+|+ ... .-...|+|
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~-n~evv~gDA-----~~y-----~fe~ADvv 100 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDV-NWEVVVGDA-----RDY-----DFENADVV 100 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCc-ceEEEeccc-----ccc-----ccccccee
Confidence 57999999999999988887 679999999999999999999777765 599999999 222 12467999
Q ss_pred EE
Q psy7093 221 VS 222 (322)
Q Consensus 221 v~ 222 (322)
+|
T Consensus 101 ic 102 (252)
T COG4076 101 IC 102 (252)
T ss_pred HH
Confidence 98
No 230
>KOG4589|consensus
Probab=98.13 E-value=3.1e-05 Score=65.14 Aligned_cols=140 Identities=13% Similarity=0.171 Sum_probs=92.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA-EIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~-D~~~~~~~~~l~~~~~~~~f 217 (322)
..+|||+||..|..+..+-++. |+..|.|||+-.-. ..+ .+.++++ |++|+.....+.+.+++.+.
T Consensus 70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~-----------p~~-Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE-----------PPE-GATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc-----------CCC-CcccccccccCCHHHHHHHHHhCCCCcc
Confidence 3799999999999998777765 88999999985321 112 2556666 88766544444444567889
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC-CCHHHHHHHHHHcCC
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH-DHLDKIKEWLGICGH 296 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-~~~~~~~~~l~~~~~ 296 (322)
|+|+|+.-=-.++ ...++|+.. .++....+..+...++|+|.+++-+-. .+...+...+...
T Consensus 138 dvVlSDMapnaTG------vr~~Dh~~~---------i~LC~s~l~~al~~~~p~g~fvcK~w~g~e~~~l~r~l~~~-- 200 (232)
T KOG4589|consen 138 DVVLSDMAPNATG------VRIRDHYRS---------IELCDSALLFALTLLIPNGSFVCKLWDGSEEALLQRRLQAV-- 200 (232)
T ss_pred cEEEeccCCCCcC------cchhhHHHH---------HHHHHHHHHHhhhhcCCCcEEEEEEecCCchHHHHHHHHHH--
Confidence 9999974221111 122333332 244567778889999999999998754 3345566666554
Q ss_pred CCceeeEEEecCCCC
Q psy7093 297 HMKLKLVENYKDFNN 311 (322)
Q Consensus 297 ~~~~~~v~~~~D~~g 311 (322)
|.+|++.|-.+.
T Consensus 201 ---f~~Vk~vKP~As 212 (232)
T KOG4589|consen 201 ---FTNVKKVKPDAS 212 (232)
T ss_pred ---hhhcEeeCCccc
Confidence 677877665443
No 231
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.09 E-value=8e-06 Score=69.19 Aligned_cols=116 Identities=20% Similarity=0.329 Sum_probs=82.1
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCccc
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~ 204 (322)
+.+++...-..- ++++|||+|+|||..+++.++. ....|++.|+.+......+.|++.+++. +.+...|.
T Consensus 67 lAR~i~~~PetV--rgkrVLd~gagsgLvaIAaa~a-GA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~----- 136 (218)
T COG3897 67 LARYIDDHPETV--RGKRVLDLGAGSGLVAIAAARA-GAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADL----- 136 (218)
T ss_pred HHHHHhcCcccc--ccceeeecccccChHHHHHHHh-hhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccc-----
Confidence 334444433332 3489999999999999999887 5678999999999999999999999965 88999988
Q ss_pred ccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC
Q psy7093 205 VKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH 283 (322)
Q Consensus 205 ~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~ 283 (322)
.. .+..||+|+.-=-+ |++. +..+++. ..+.|+..|..++.-.+..
T Consensus 137 ~g------~~~~~Dl~LagDlf---------------y~~~-----------~a~~l~~-~~~~l~~~g~~vlvgdp~R 182 (218)
T COG3897 137 IG------SPPAFDLLLAGDLF---------------YNHT-----------EADRLIP-WKDRLAEAGAAVLVGDPGR 182 (218)
T ss_pred cC------CCcceeEEEeecee---------------cCch-----------HHHHHHH-HHHHHHhCCCEEEEeCCCC
Confidence 32 35689999872111 1111 1335666 6777778887776443443
No 232
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.09 E-value=6.4e-05 Score=69.71 Aligned_cols=136 Identities=17% Similarity=0.130 Sum_probs=81.7
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEE
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP----KLKAIAIDQSKHACDLTEQNAVMHNVAN-QLQ 193 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~----~~~v~~vDis~~al~~A~~n~~~~~l~~-~i~ 193 (322)
|-|.+.+-+..-+.....+ ++..++|+|||+|.=+..+...+. ...++++|+|.++|+.+..++.....+. .+.
T Consensus 57 r~E~~iL~~~~~~Ia~~i~-~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~ 135 (319)
T TIGR03439 57 NDEIEILKKHSSDIAASIP-SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCA 135 (319)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEE
Confidence 5565555444333332221 235899999999987666666542 4679999999999999999987333332 234
Q ss_pred EEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhc-cCccC
Q psy7093 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSN-YLKPN 272 (322)
Q Consensus 194 ~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~-~Lk~g 272 (322)
-+++|.++. +..++.........+++. +. ..+.+|+|..| ..+++...+ .|+||
T Consensus 136 ~l~gdy~~~--l~~l~~~~~~~~~r~~~f-----lG-------SsiGNf~~~ea-----------~~fL~~~~~~~l~~~ 190 (319)
T TIGR03439 136 GLLGTYDDG--LAWLKRPENRSRPTTILW-----LG-------SSIGNFSRPEA-----------AAFLAGFLATALSPS 190 (319)
T ss_pred EEEecHHHH--HhhcccccccCCccEEEE-----eC-------ccccCCCHHHH-----------HHHHHHHHHhhCCCC
Confidence 478887221 111211001123455554 11 12334555444 478888888 99999
Q ss_pred cEEEEEEc
Q psy7093 273 GSIFLETN 280 (322)
Q Consensus 273 G~l~~e~~ 280 (322)
|.+++-+.
T Consensus 191 d~lLiG~D 198 (319)
T TIGR03439 191 DSFLIGLD 198 (319)
T ss_pred CEEEEecC
Confidence 99998653
No 233
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.08 E-value=1.7e-05 Score=75.27 Aligned_cols=101 Identities=19% Similarity=0.279 Sum_probs=77.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVAN-QLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~-~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.+|||.-+|||.=++-.+++.++ .+|++.|+|+++++..++|++.+++.+ ++++.+.|+ ...+. .....||
T Consensus 51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DA-----n~ll~--~~~~~fD 123 (377)
T PF02005_consen 51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDA-----NVLLY--SRQERFD 123 (377)
T ss_dssp EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-H-----HHHHC--HSTT-EE
T ss_pred ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhH-----HHHhh--hccccCC
Confidence 58999999999999999999654 689999999999999999999999987 799999998 33221 1467899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+|=.+| |.+. ..++..+.+.++.||+|.+.
T Consensus 124 ~IDlDP-fGSp-----------------------------~pfldsA~~~v~~gGll~vT 153 (377)
T PF02005_consen 124 VIDLDP-FGSP-----------------------------APFLDSALQAVKDGGLLCVT 153 (377)
T ss_dssp EEEE---SS-------------------------------HHHHHHHHHHEEEEEEEEEE
T ss_pred EEEeCC-CCCc-----------------------------cHhHHHHHHHhhcCCEEEEe
Confidence 999985 4432 26888999999999999884
No 234
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=98.08 E-value=6.1e-05 Score=74.51 Aligned_cols=150 Identities=19% Similarity=0.305 Sum_probs=88.0
Q ss_pred CcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCC----CCEEEEEeCCHHHHHHHHHHHHHcCCCC
Q psy7093 115 VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFP----KLKAIAIDQSKHACDLTEQNAVMHNVAN 190 (322)
Q Consensus 115 ~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~----~~~v~~vDis~~al~~A~~n~~~~~l~~ 190 (322)
+++|+...+.++ +.+.....+...+.|++||||.+.+...+... ...++|.+..+.+...|+.|...++...
T Consensus 197 ~~Tp~~Iv~l~~----~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~ 272 (501)
T TIGR00497 197 FFTPQDISELLA----RIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDY 272 (501)
T ss_pred eeCcHHHHHHHH----HHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCc
Confidence 445655544443 33332211225799999999999887655432 2468999999999999999987776532
Q ss_pred -cEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCCh---hhhccccccccc-CCCChhHHHHHHHHHH
Q psy7093 191 -QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEP---EIALYEDIKALD-GGHDGLNIIKPICVFG 265 (322)
Q Consensus 191 -~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~---~v~~~ep~~al~-~g~~gl~~~~~~l~~~ 265 (322)
......+|. +... ......+||.|++||||........+++ ..+.|.-+ .+. -...|+ .++...
T Consensus 273 ~t~~~~~~dt-----l~~~-d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~-~l~~~~~~~~----afi~h~ 341 (501)
T TIGR00497 273 ANFNIINADT-----LTTK-EWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAG-TLAPNSKADL----AFVLHA 341 (501)
T ss_pred cccCcccCCc-----CCCc-cccccccCCEEeecCCcccccccccccccccccchhccc-CCCCCchhhH----HHHHHH
Confidence 244445565 3321 1112357999999999975332221221 11111000 010 123343 677777
Q ss_pred hccCccCcEEEEEE
Q psy7093 266 SNYLKPNGSIFLET 279 (322)
Q Consensus 266 ~~~Lk~gG~l~~e~ 279 (322)
...|++||...+..
T Consensus 342 ~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 342 LYVLGQEGTAAIVC 355 (501)
T ss_pred HHhcCCCCeEEEEe
Confidence 88899999866544
No 235
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.07 E-value=3e-05 Score=63.40 Aligned_cols=59 Identities=20% Similarity=0.444 Sum_probs=50.2
Q ss_pred CCeEEEEcCchhHHHHHHHH-----hCCCCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEEccC
Q psy7093 140 PTRMIEIGSGTGAITISLLK-----HFPKLKAIAIDQSKHACDLTEQNAVMHN--VANQLQVFHAEI 199 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~-----~~~~~~v~~vDis~~al~~A~~n~~~~~--l~~~i~~~~~D~ 199 (322)
...|+|+|||.|.++..++. . ++.+|+++|.++..++.+....+..+ ...++++..+++
T Consensus 26 ~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 91 (141)
T PF13679_consen 26 CITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDI 91 (141)
T ss_pred CCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccch
Confidence 47899999999999999999 4 68899999999999999999888776 445566666665
No 236
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.06 E-value=3.6e-05 Score=68.41 Aligned_cols=90 Identities=22% Similarity=0.259 Sum_probs=63.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.++||||+|.|..+..++..+ .+|+++|.|+.|.. .+++.| ++++..|- +.. ...+||+|
T Consensus 96 ~~lLDlGAGdG~VT~~l~~~f--~~v~aTE~S~~Mr~----rL~~kg----~~vl~~~~--------w~~--~~~~fDvI 155 (265)
T PF05219_consen 96 KSLLDLGAGDGEVTERLAPLF--KEVYATEASPPMRW----RLSKKG----FTVLDIDD--------WQQ--TDFKFDVI 155 (265)
T ss_pred CceEEecCCCcHHHHHHHhhc--ceEEeecCCHHHHH----HHHhCC----CeEEehhh--------hhc--cCCceEEE
Confidence 689999999999999999986 46999999998843 344444 33333221 111 24589999
Q ss_pred EE-cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 221 VS-NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 221 v~-NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
.| |- -.+.+.| ..+++.+.+.|+|+|.+++
T Consensus 156 scLNv-------------LDRc~~P--------------~~LL~~i~~~l~p~G~lil 186 (265)
T PF05219_consen 156 SCLNV-------------LDRCDRP--------------LTLLRDIRRALKPNGRLIL 186 (265)
T ss_pred eehhh-------------hhccCCH--------------HHHHHHHHHHhCCCCEEEE
Confidence 98 21 1112233 3788899999999999876
No 237
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.05 E-value=1.7e-05 Score=64.55 Aligned_cols=57 Identities=19% Similarity=0.408 Sum_probs=52.2
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
.++|+|||.|.++..+++..+..+|+++|.++.+.+.+++|++.+++.+ +++++..+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeee
Confidence 4899999999999999999888899999999999999999999888764 88888887
No 238
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.02 E-value=9.5e-06 Score=71.72 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=33.6
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHH
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDL 178 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~ 178 (322)
+.+|||+|||+|.++..+++. +..+|+|+|+++.++..
T Consensus 76 ~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 76 NKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence 368999999999999999987 56789999999987765
No 239
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.02 E-value=3e-06 Score=65.62 Aligned_cols=100 Identities=16% Similarity=0.183 Sum_probs=43.9
Q ss_pred EEEcCchhHHHHHHHHhCCCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 144 IEIGSGTGAITISLLKHFPKL---KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 144 LDlg~GsG~~~~~la~~~~~~---~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
||+||..|..++.+++.++.. +++++|..+. .+.++++++..++.+++++++++. .+.++. +..+++|+|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s-----~~~l~~-~~~~~~dli 73 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDS-----PDFLPS-LPDGPIDLI 73 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-T-----HHHHHH-HHH--EEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCc-----HHHHHH-cCCCCEEEE
Confidence 689999999999988876543 6999999986 445555566567777899999998 444332 224689999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+.+-+-. ......-++.+...|+|||++++
T Consensus 74 ~iDg~H~---------------------------~~~~~~dl~~~~~~l~~ggviv~ 103 (106)
T PF13578_consen 74 FIDGDHS---------------------------YEAVLRDLENALPRLAPGGVIVF 103 (106)
T ss_dssp EEES------------------------------HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EECCCCC---------------------------HHHHHHHHHHHHHHcCCCeEEEE
Confidence 9953100 12245778889999999999887
No 240
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.97 E-value=2.1e-05 Score=68.44 Aligned_cols=94 Identities=20% Similarity=0.281 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-------cCC-CCcEEE
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM-------HNV-ANQLQV 194 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~-------~~l-~~~i~~ 194 (322)
...+..+++.+.-. +...++|||||.|...+.+|...+-.+.+|+|+.+...+.|+.+... ++. ..++++
T Consensus 28 ~~~~~~il~~~~l~--~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l 105 (205)
T PF08123_consen 28 PEFVSKILDELNLT--PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVEL 105 (205)
T ss_dssp HHHHHHHHHHTT----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEE
T ss_pred HHHHHHHHHHhCCC--CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhccccccee
Confidence 34455666666543 23799999999999999998887767799999999999888775433 232 346888
Q ss_pred EEccCCCcccccccCcCcCCCCeeEEEEc
Q psy7093 195 FHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223 (322)
Q Consensus 195 ~~~D~~~~~~~~~l~~~~~~~~fDlIv~N 223 (322)
.++|+.++..... .-...|+|++|
T Consensus 106 ~~gdfl~~~~~~~-----~~s~AdvVf~N 129 (205)
T PF08123_consen 106 IHGDFLDPDFVKD-----IWSDADVVFVN 129 (205)
T ss_dssp ECS-TTTHHHHHH-----HGHC-SEEEE-
T ss_pred eccCccccHhHhh-----hhcCCCEEEEe
Confidence 9999832211111 11346899997
No 241
>KOG2198|consensus
Probab=97.91 E-value=0.00024 Score=66.01 Aligned_cols=168 Identities=20% Similarity=0.220 Sum_probs=104.2
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCC----EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc--cccCcCc
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKL----KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV--KNLQPDL 212 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~----~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~--~~l~~~~ 212 (322)
++.+|||+|+..|.=++.+....-.. .|++-|.++.-+....+-..+..-. .+.+...|+..-... .... ..
T Consensus 155 p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~-~~~v~~~~~~~~p~~~~~~~~-~~ 232 (375)
T KOG2198|consen 155 PGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSP-NLLVTNHDASLFPNIYLKDGN-DK 232 (375)
T ss_pred CCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCc-ceeeecccceeccccccccCc-hh
Confidence 34799999999998888887765333 8999999999998888777555432 344555554110000 0000 01
Q ss_pred CCCCeeEEEEcCCCCCCCCCCCCChhhhcccc-cccccCCCChh-HHHHHHHHHHhccCccCcEEEEEEcC----CCHHH
Q psy7093 213 LEQKFDLVVSNPPYVPSLDIPKLEPEIALYED-IKALDGGHDGL-NIIKPICVFGSNYLKPNGSIFLETNH----DHLDK 286 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep-~~al~~g~~gl-~~~~~~l~~~~~~Lk~gG~l~~e~~~----~~~~~ 286 (322)
....||-|+++-|......+.. +...+.. .... -..|| ..--.++.++.++||+||.+++.++. .....
T Consensus 233 ~~~~fDrVLvDVPCS~Dgt~rk---~~~i~~~~w~~~--~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaV 307 (375)
T KOG2198|consen 233 EQLKFDRVLVDVPCSGDGTLRK---NPNIWKEGWKTQ--RALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAV 307 (375)
T ss_pred hhhhcceeEEecccCCCccccc---CchHhhhhhhhh--hccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHH
Confidence 2347999999999765432222 1111111 1110 01232 22358999999999999999998864 33566
Q ss_pred HHHHHHHcCCCCceeeEEEecCCCCCCeE
Q psy7093 287 IKEWLGICGHHMKLKLVENYKDFNNKDRF 315 (322)
Q Consensus 287 ~~~~l~~~~~~~~~~~v~~~~D~~g~~R~ 315 (322)
+.++++..+. .+.-+.+..|+.+..|+
T Consensus 308 V~~~L~~~~~--~~~lv~~~~~lp~l~r~ 334 (375)
T KOG2198|consen 308 VQEALQKVGG--AVELVDVSGDLPGLKRM 334 (375)
T ss_pred HHHHHHHhcC--cccceeeccccccceec
Confidence 7888888764 35556666666665543
No 242
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=97.89 E-value=4.2e-05 Score=66.38 Aligned_cols=122 Identities=18% Similarity=0.240 Sum_probs=80.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+.||.|+|.|.++-.++..+ -.+|..||..+..++.|++.+.... ..-.++++.-+ +.+. ...++||+|
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gL------Q~f~--P~~~~YDlI 126 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGL------QDFT--PEEGKYDLI 126 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-G------GG------TT-EEEE
T ss_pred ceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCH------hhcc--CCCCcEeEE
Confidence 689999999999998776654 4689999999999999997654311 22245666655 2221 124699999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE----------EcC------CCH
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE----------TNH------DHL 284 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e----------~~~------~~~ 284 (322)
.+. ....+|..+. +-.+++++...|+|||++++- ... +..
T Consensus 127 W~Q------W~lghLTD~d------------------lv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~ 182 (218)
T PF05891_consen 127 WIQ------WCLGHLTDED------------------LVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSD 182 (218)
T ss_dssp EEE------S-GGGS-HHH------------------HHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEH
T ss_pred Eeh------HhhccCCHHH------------------HHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCH
Confidence 984 1222333322 458999999999999999882 111 235
Q ss_pred HHHHHHHHHcCC
Q psy7093 285 DKIKEWLGICGH 296 (322)
Q Consensus 285 ~~~~~~l~~~~~ 296 (322)
+..++++++.|.
T Consensus 183 ~~~~~lF~~AGl 194 (218)
T PF05891_consen 183 EHFRELFKQAGL 194 (218)
T ss_dssp HHHHHHHHHCT-
T ss_pred HHHHHHHHHcCC
Confidence 789999999873
No 243
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.86 E-value=0.00011 Score=68.29 Aligned_cols=100 Identities=19% Similarity=0.277 Sum_probs=79.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|+|.-+|||.=++-.|.+.+..+|+.-|+||+|++.+++|++.+...+ ..+++.|+ ..-+.. ....||+|
T Consensus 54 ~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~-~~v~n~DA-----N~lm~~--~~~~fd~I 125 (380)
T COG1867 54 KRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGED-AEVINKDA-----NALLHE--LHRAFDVI 125 (380)
T ss_pred eEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCccc-ceeecchH-----HHHHHh--cCCCccEE
Confidence 79999999999999999999887799999999999999999999984343 55566777 333321 23789999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
=.+| |.+.. .++..+.+..+.||++.+.
T Consensus 126 DiDP-FGSPa-----------------------------PFlDaA~~s~~~~G~l~vT 153 (380)
T COG1867 126 DIDP-FGSPA-----------------------------PFLDAALRSVRRGGLLCVT 153 (380)
T ss_pred ecCC-CCCCc-----------------------------hHHHHHHHHhhcCCEEEEE
Confidence 8875 44322 5788888899999998873
No 244
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.84 E-value=5.6e-05 Score=65.28 Aligned_cols=140 Identities=16% Similarity=0.175 Sum_probs=73.1
Q ss_pred CCeEEEEcCchhHHHHHHHHh---C-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKH---F-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~---~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
|..|+++|.-.|.-++..|+. + +..+|+|+|++...... .....+.+.++|+++++|..+++.+..+.......
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 379999999888877776653 3 67899999996543221 12233455678999999986555444432211234
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE----------------
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET---------------- 279 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~---------------- 279 (322)
...+|+-+- ++.... .-..++....++++|+++++|=
T Consensus 111 ~~vlVilDs--------~H~~~h-------------------vl~eL~~y~plv~~G~Y~IVeDt~~~~~~~~~~~~~~w 163 (206)
T PF04989_consen 111 HPVLVILDS--------SHTHEH-------------------VLAELEAYAPLVSPGSYLIVEDTIIEDWPESWFPDRPW 163 (206)
T ss_dssp SSEEEEESS------------SS-------------------HHHHHHHHHHT--TT-EEEETSHHHHHHHHS-------
T ss_pred CceEEEECC--------CccHHH-------------------HHHHHHHhCccCCCCCEEEEEeccccccccccccccch
Confidence 456777641 111122 2256666889999999999852
Q ss_pred --cCCCHHHHHHHHHHcCCCCceeeEEEecCCCC
Q psy7093 280 --NHDHLDKIKEWLGICGHHMKLKLVENYKDFNN 311 (322)
Q Consensus 280 --~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g 311 (322)
|++-...+.+++.++. .|...+.+.|..|
T Consensus 164 ~~g~~p~~av~~fL~~~~---~f~iD~~~~~~~~ 194 (206)
T PF04989_consen 164 GPGNNPKTAVKEFLAEHP---DFEIDTYYEDKFG 194 (206)
T ss_dssp ------HHHHHHHHHTTT---TEEEETTTTTS--
T ss_pred hhhhHHHHHHHHHHHHCC---CcEeccccccccc
Confidence 2334677999999886 3665555555544
No 245
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.81 E-value=9.4e-05 Score=67.96 Aligned_cols=94 Identities=18% Similarity=0.264 Sum_probs=71.6
Q ss_pred hHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCC
Q psy7093 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201 (322)
Q Consensus 122 te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~ 201 (322)
+..+.+.+++.+.... +..++|..+|.|.-+..+++.++..+|+|+|.++.|+..|++++..+ .+++++++++.
T Consensus 5 ~pVll~Evl~~L~~~~--ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF-- 78 (305)
T TIGR00006 5 QSVLLDEVVEGLNIKP--DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNF-- 78 (305)
T ss_pred cchhHHHHHHhcCcCC--CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCH--
Confidence 3456778888876543 37999999999999999999987799999999999999999988654 46799999986
Q ss_pred cccccccCcC---cCCCCeeEEEEcCC
Q psy7093 202 KGQVKNLQPD---LLEQKFDLVVSNPP 225 (322)
Q Consensus 202 ~~~~~~l~~~---~~~~~fDlIv~NPP 225 (322)
..+... ....++|.|+.|.-
T Consensus 79 ----~~l~~~l~~~~~~~vDgIl~DLG 101 (305)
T TIGR00006 79 ----ANFFEHLDELLVTKIDGILVDLG 101 (305)
T ss_pred ----HHHHHHHHhcCCCcccEEEEecc
Confidence 222111 12246788877653
No 246
>KOG3115|consensus
Probab=97.81 E-value=0.00017 Score=61.50 Aligned_cols=129 Identities=13% Similarity=0.178 Sum_probs=86.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC------CCCcEEEEEccCCCcccccccCcCcCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN------VANQLQVFHAEIDSKGQVKNLQPDLLE 214 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~------l~~~i~~~~~D~~~~~~~~~l~~~~~~ 214 (322)
..+.|||||=|.+.+.++-.+|+.-+.|.||--...+..++.+..+. .-.++.+...+. +..++..+..
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~na-----mk~lpn~f~k 136 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNA-----MKFLPNFFEK 136 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccc-----hhhccchhhh
Confidence 57999999999999999999999999999999999999888887654 122477777777 6666655555
Q ss_pred CCeeEEEE---cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCC-CHHHHHHH
Q psy7093 215 QKFDLVVS---NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD-HLDKIKEW 290 (322)
Q Consensus 215 ~~fDlIv~---NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~-~~~~~~~~ 290 (322)
++.+-.+. +|-|-..... +.-+...++.+..-+|++||.++..+... -.......
T Consensus 137 gqLskmff~fpdpHfk~~khk---------------------~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~ 195 (249)
T KOG3115|consen 137 GQLSKMFFLFPDPHFKARKHK---------------------WRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKH 195 (249)
T ss_pred cccccceeecCChhHhhhhcc---------------------ceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHH
Confidence 54443332 2222211111 11123467778888999999998755432 23334444
Q ss_pred HHHcC
Q psy7093 291 LGICG 295 (322)
Q Consensus 291 l~~~~ 295 (322)
+++++
T Consensus 196 ~e~hp 200 (249)
T KOG3115|consen 196 LEEHP 200 (249)
T ss_pred HHhCc
Confidence 45554
No 247
>KOG3045|consensus
Probab=97.81 E-value=0.00015 Score=64.13 Aligned_cols=113 Identities=18% Similarity=0.308 Sum_probs=73.0
Q ss_pred HHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc
Q psy7093 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205 (322)
Q Consensus 126 v~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~ 205 (322)
++.+++.+...+ ....|.|+|||-+-++. +. ..+|+..|+.+. . -.++.+|+
T Consensus 168 ld~ii~~ik~r~-~~~vIaD~GCGEakiA~---~~--~~kV~SfDL~a~--------------~--~~V~~cDm------ 219 (325)
T KOG3045|consen 168 LDVIIRKIKRRP-KNIVIADFGCGEAKIAS---SE--RHKVHSFDLVAV--------------N--ERVIACDM------ 219 (325)
T ss_pred HHHHHHHHHhCc-CceEEEecccchhhhhh---cc--ccceeeeeeecC--------------C--Cceeeccc------
Confidence 345555555442 23689999999999876 22 346899997531 1 34567887
Q ss_pred cccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE-EEcCCC-
Q psy7093 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL-ETNHDH- 283 (322)
Q Consensus 206 ~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~-e~~~~~- 283 (322)
..+| +.+++.|++|+.....-+ . +..+++++.+.|++||.+++ |+.++-
T Consensus 220 ~~vP--l~d~svDvaV~CLSLMgt--------n-------------------~~df~kEa~RiLk~gG~l~IAEv~SRf~ 270 (325)
T KOG3045|consen 220 RNVP--LEDESVDVAVFCLSLMGT--------N-------------------LADFIKEANRILKPGGLLYIAEVKSRFS 270 (325)
T ss_pred cCCc--CccCcccEEEeeHhhhcc--------c-------------------HHHHHHHHHHHhccCceEEEEehhhhcc
Confidence 3333 467899999885332211 1 45799999999999999977 554432
Q ss_pred -HHHHHHHHHHcC
Q psy7093 284 -LDKIKEWLGICG 295 (322)
Q Consensus 284 -~~~~~~~l~~~~ 295 (322)
.....+.+...|
T Consensus 271 dv~~f~r~l~~lG 283 (325)
T KOG3045|consen 271 DVKGFVRALTKLG 283 (325)
T ss_pred cHHHHHHHHHHcC
Confidence 233444555555
No 248
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=97.72 E-value=0.001 Score=59.69 Aligned_cols=155 Identities=19% Similarity=0.230 Sum_probs=87.0
Q ss_pred HHHHHHHHHh----ccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-----------
Q psy7093 124 ELIDIITDKL----ESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV----------- 188 (322)
Q Consensus 124 ~lv~~i~~~~----~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l----------- 188 (322)
.++...++.+ .....++.++||+|||.-...+..|... -.+|+..|.++...+..++-++.-+.
T Consensus 37 ~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~ 115 (256)
T PF01234_consen 37 EILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVC 115 (256)
T ss_dssp HHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHH
T ss_pred hhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHH
Confidence 4455444433 3222234689999999854433223221 34799999999988766554332111
Q ss_pred -----C-----------CcE-EEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCC
Q psy7093 189 -----A-----------NQL-QVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGG 251 (322)
Q Consensus 189 -----~-----------~~i-~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g 251 (322)
. ..| .++.+|++.+..+.... ....+||+|++-- .|..-
T Consensus 116 ~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~--~~p~~~D~v~s~f----------------------cLE~a 171 (256)
T PF01234_consen 116 ELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPV--VLPPKFDCVISSF----------------------CLESA 171 (256)
T ss_dssp HHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS---SS-SSEEEEEEES----------------------SHHHH
T ss_pred hccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccc--cCccchhhhhhhH----------------------HHHHH
Confidence 0 013 37788984433332200 0123699999831 11111
Q ss_pred CChhHHHHHHHHHHhccCccCcEEEEEE---------cC-------CCHHHHHHHHHHcCCCCceeeEEEec
Q psy7093 252 HDGLNIIKPICVFGSNYLKPNGSIFLET---------NH-------DHLDKIKEWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 252 ~~gl~~~~~~l~~~~~~Lk~gG~l~~e~---------~~-------~~~~~~~~~l~~~~~~~~~~~v~~~~ 307 (322)
..-++-|++.+++..++|||||.|++.- |. -..+.+++.+++.| |..+...+
T Consensus 172 ~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG----~~i~~~~~ 239 (256)
T PF01234_consen 172 CKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAG----FDIEDLEK 239 (256)
T ss_dssp -SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTT----EEEEEEEG
T ss_pred cCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcC----CEEEeccc
Confidence 1235669999999999999999998732 22 23688999999886 55555444
No 249
>KOG3201|consensus
Probab=97.68 E-value=7.5e-05 Score=61.42 Aligned_cols=141 Identities=16% Similarity=0.194 Sum_probs=94.6
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC--cEEEE
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN--QLQVF 195 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~--~i~~~ 195 (322)
.|..|.+.-.++...... .+.+||++|.| +|..++.+|..-|...|..+|-++.+++-.++-...+..+. +..++
T Consensus 11 wpseeala~~~l~~~n~~--rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vl 88 (201)
T KOG3201|consen 11 WPSEEALAWTILRDPNKI--RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVL 88 (201)
T ss_pred cccHHHHHHHHHhchhHH--hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhh
Confidence 566677766666655543 23789999999 67778888888899999999999999988877655543221 23333
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEcC-CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSNP-PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~NP-Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~ 274 (322)
..++ -... ......+||+|++-- -|. -++-..+++.+..+|+|.|.
T Consensus 89 rw~~-----~~aq-sq~eq~tFDiIlaADClFf---------------------------dE~h~sLvdtIk~lL~p~g~ 135 (201)
T KOG3201|consen 89 RWLI-----WGAQ-SQQEQHTFDIILAADCLFF---------------------------DEHHESLVDTIKSLLRPSGR 135 (201)
T ss_pred HHHH-----hhhH-HHHhhCcccEEEeccchhH---------------------------HHHHHHHHHHHHHHhCcccc
Confidence 3333 1110 011235899999821 110 02235778888999999999
Q ss_pred EEEEEcCCCHHHHHHHHHHcC
Q psy7093 275 IFLETNHDHLDKIKEWLGICG 295 (322)
Q Consensus 275 l~~e~~~~~~~~~~~~l~~~~ 295 (322)
.++ ..++.++.+.+++...+
T Consensus 136 Al~-fsPRRg~sL~kF~de~~ 155 (201)
T KOG3201|consen 136 ALL-FSPRRGQSLQKFLDEVG 155 (201)
T ss_pred eeE-ecCcccchHHHHHHHHH
Confidence 665 78888888888877654
No 250
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=97.68 E-value=0.00021 Score=68.96 Aligned_cols=116 Identities=18% Similarity=0.342 Sum_probs=67.9
Q ss_pred hhHHHHHHHHHHhcc--CCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEE---eCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy7093 121 ETEELIDIITDKLES--SNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAI---DQSKHACDLTEQNAVMHNVANQLQVF 195 (322)
Q Consensus 121 ~te~lv~~i~~~~~~--~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~v---Dis~~al~~A~~n~~~~~l~~~i~~~ 195 (322)
....+++.+.+.+.. ....-..+||+|||+|.++..|..+ +..++.+ |..+..++.|-+. |++.-+.+.
T Consensus 97 Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~~ 170 (506)
T PF03141_consen 97 GADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALER----GVPAMIGVL 170 (506)
T ss_pred CHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhhc----Ccchhhhhh
Confidence 345667777666654 2211246899999999999999887 4333322 3344444444322 433211111
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEc---CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccC
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSN---PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPN 272 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~N---PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~g 272 (322)
+. ..++ ++.+.||+|-|- -||+... | .++-++-|+|+||
T Consensus 171 -~s-------~rLP--fp~~~fDmvHcsrc~i~W~~~~-----------------------g-----~~l~evdRvLRpG 212 (506)
T PF03141_consen 171 -GS-------QRLP--FPSNAFDMVHCSRCLIPWHPND-----------------------G-----FLLFEVDRVLRPG 212 (506)
T ss_pred -cc-------cccc--CCccchhhhhcccccccchhcc-----------------------c-----ceeehhhhhhccC
Confidence 11 2233 467899999773 2333322 2 2556678999999
Q ss_pred cEEEEEEc
Q psy7093 273 GSIFLETN 280 (322)
Q Consensus 273 G~l~~e~~ 280 (322)
|++++.-.
T Consensus 213 Gyfv~S~p 220 (506)
T PF03141_consen 213 GYFVLSGP 220 (506)
T ss_pred ceEEecCC
Confidence 99988544
No 251
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=97.68 E-value=0.00011 Score=57.02 Aligned_cols=66 Identities=24% Similarity=0.332 Sum_probs=46.2
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC------CCHHHHHH
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH------DHLDKIKE 289 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~------~~~~~~~~ 289 (322)
+||+||.||||............ .....++|..+++.+.++| +|.+.+.++. .....+++
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~------------~~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~ 67 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKK------------KKKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRK 67 (106)
T ss_pred CcCEEEECCCChhhccccchhhc------------ccccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHH
Confidence 69999999999987653321111 1115678999999999988 9999877653 33566777
Q ss_pred HHHHcC
Q psy7093 290 WLGICG 295 (322)
Q Consensus 290 ~l~~~~ 295 (322)
.+....
T Consensus 68 ~l~~~~ 73 (106)
T PF07669_consen 68 FLLNNT 73 (106)
T ss_pred HHhcCC
Confidence 776544
No 252
>KOG2940|consensus
Probab=97.65 E-value=0.00016 Score=62.85 Aligned_cols=80 Identities=20% Similarity=0.214 Sum_probs=58.4
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..++|+|||-|.+...+..+. --+++-+|.|..+++.++..- ..++ .+....+|- +.++ +.++++|+|
T Consensus 74 p~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~q-dp~i--~~~~~v~DE------E~Ld--f~ens~DLi 141 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQ-DPSI--ETSYFVGDE------EFLD--FKENSVDLI 141 (325)
T ss_pred cceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccC-CCce--EEEEEecch------hccc--ccccchhhh
Confidence 679999999999999998873 558999999999998887421 1121 134445553 3443 467899999
Q ss_pred EEcCCCCCCCCC
Q psy7093 221 VSNPPYVPSLDI 232 (322)
Q Consensus 221 v~NPPy~~~~~~ 232 (322)
++....++.++.
T Consensus 142 isSlslHW~NdL 153 (325)
T KOG2940|consen 142 ISSLSLHWTNDL 153 (325)
T ss_pred hhhhhhhhhccC
Confidence 998877776664
No 253
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.64 E-value=0.00084 Score=61.18 Aligned_cols=47 Identities=19% Similarity=0.348 Sum_probs=39.1
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHH
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVM 185 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~ 185 (322)
.+.+|||+|||.|....++...++ -.+++++|.|+.+++.++.-+..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 458999999999988887777766 34799999999999999876543
No 254
>PRK13699 putative methylase; Provisional
Probab=97.62 E-value=0.00029 Score=62.41 Aligned_cols=87 Identities=13% Similarity=0.251 Sum_probs=59.1
Q ss_pred EEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccC
Q psy7093 193 QVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPN 272 (322)
Q Consensus 193 ~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~g 272 (322)
+++++|. ++.+. .++.+++|+||.+|||...... ... .. ..+.+..+.+..++.++.++||||
T Consensus 3 ~l~~gD~-----le~l~-~lpd~SVDLIiTDPPY~i~~~~-~~~------~~----~~~~~~~ew~~~~l~E~~RVLKpg 65 (227)
T PRK13699 3 RFILGNC-----IDVMA-RFPDNAVDFILTDPPYLVGFRD-RQG------RT----IAGDKTDEWLQPACNEMYRVLKKD 65 (227)
T ss_pred eEEechH-----HHHHH-hCCccccceEEeCCCccccccc-CCC------cc----cccccHHHHHHHHHHHHHHHcCCC
Confidence 5678888 55543 2567899999999999632110 000 00 112234466789999999999999
Q ss_pred cEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 273 GSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 273 G~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
|.+++-++..+...+...+++.|+
T Consensus 66 g~l~if~~~~~~~~~~~al~~~GF 89 (227)
T PRK13699 66 ALMVSFYGWNRVDRFMAAWKNAGF 89 (227)
T ss_pred CEEEEEeccccHHHHHHHHHHCCC
Confidence 999887777766666677777764
No 255
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=97.57 E-value=0.00068 Score=56.64 Aligned_cols=109 Identities=21% Similarity=0.359 Sum_probs=75.7
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+|+-+||=|-...+.- ...+..+++..|++..- ..++ +. .|+.-|...+ ..++..+ .++||+|
T Consensus 27 ~~iaclstPsl~~~l~~-~~~~~~~~~Lle~D~RF--------~~~~--~~-~F~fyD~~~p---~~~~~~l-~~~~d~v 90 (162)
T PF10237_consen 27 TRIACLSTPSLYEALKK-ESKPRIQSFLLEYDRRF--------EQFG--GD-EFVFYDYNEP---EELPEEL-KGKFDVV 90 (162)
T ss_pred CEEEEEeCcHHHHHHHh-hcCCCccEEEEeecchH--------HhcC--Cc-ceEECCCCCh---hhhhhhc-CCCceEE
Confidence 78999999888776655 23467899999999742 2222 22 4556665211 1223233 5799999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHH
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWL 291 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l 291 (322)
|++|||... + ...+....+.-++++++.+++.+|....+.+.+++
T Consensus 91 v~DPPFl~~--------e------------------c~~k~a~ti~~L~k~~~kii~~Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 91 VIDPPFLSE--------E------------------CLTKTAETIRLLLKPGGKIILCTGEEMEELIKKLL 135 (162)
T ss_pred EECCCCCCH--------H------------------HHHHHHHHHHHHhCccceEEEecHHHHHHHHHHHh
Confidence 999999442 2 24566677777778999999999988888888887
No 256
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.53 E-value=0.00046 Score=60.55 Aligned_cols=97 Identities=25% Similarity=0.342 Sum_probs=69.0
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE-EccCCCcccccccCcCcCCCCe
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF-HAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~-~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++..+||+|+-||.|+-.+... +..+|+|+|.....+.+--++ ..|+..+ ..|+ ..+......+..
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~-gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~------r~l~~~~~~~~~ 145 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR-GAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNV------RYLTPEDFTEKP 145 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc-CCcEEEEEEccCCccCHhHhc------CCcEEEEecCCh------hhCCHHHcccCC
Confidence 3489999999999999988876 678999999988766553322 3455443 4454 333221123478
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+++++-.|++ ...++..+..+++|+|.++.
T Consensus 146 d~~v~DvSFIS-----------------------------L~~iLp~l~~l~~~~~~~v~ 176 (245)
T COG1189 146 DLIVIDVSFIS-----------------------------LKLILPALLLLLKDGGDLVL 176 (245)
T ss_pred CeEEEEeehhh-----------------------------HHHHHHHHHHhcCCCceEEE
Confidence 99999887776 34788888889999888766
No 257
>PRK11524 putative methyltransferase; Provisional
Probab=97.52 E-value=0.00026 Score=64.89 Aligned_cols=96 Identities=14% Similarity=0.210 Sum_probs=58.4
Q ss_pred EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc
Q psy7093 192 LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP 271 (322)
Q Consensus 192 i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~ 271 (322)
.+++++|. ++.+. .++.++||+|++||||............ .. ..+=.+....++..+.++|||
T Consensus 9 ~~i~~gD~-----~~~l~-~l~~~siDlIitDPPY~~~~~~~~~~~~---------~~-~~~~~~~l~~~l~~~~rvLK~ 72 (284)
T PRK11524 9 KTIIHGDA-----LTELK-KIPSESVDLIFADPPYNIGKNFDGLIEA---------WK-EDLFIDWLYEWIDECHRVLKK 72 (284)
T ss_pred CEEEeccH-----HHHHH-hcccCcccEEEECCCccccccccccccc---------cc-HHHHHHHHHHHHHHHHHHhCC
Confidence 57889998 55432 2456789999999999653221111000 00 111123457899999999999
Q ss_pred CcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 272 NGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 272 gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
||.+++.++......+..++ +.++ .+...-||
T Consensus 73 ~G~i~i~~~~~~~~~~~~~~-~~~f--~~~~~iiW 104 (284)
T PRK11524 73 QGTMYIMNSTENMPFIDLYC-RKLF--TIKSRIVW 104 (284)
T ss_pred CcEEEEEcCchhhhHHHHHH-hcCc--ceEEEEEE
Confidence 99999987766655444444 3443 24443344
No 258
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=97.46 E-value=0.0014 Score=59.28 Aligned_cols=40 Identities=18% Similarity=0.128 Sum_probs=35.2
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+||-+|||.|.++..+|.. +..+.|.|.|--|+-..+-
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNF 96 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHH
Confidence 478999999999999999999 7899999999988755544
No 259
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.45 E-value=0.00043 Score=60.51 Aligned_cols=60 Identities=15% Similarity=0.313 Sum_probs=46.4
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
.|.+-...+++.+++..... +..|||.+||||..+.++... +.+.+|+|+++..++.|++
T Consensus 172 h~~~kP~~l~~~lI~~~t~~---gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 172 HPTQKPVELIERLIKASTNP---GDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-S-HHHHHHHHHHHS-T---T-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHHH
T ss_pred eeecCCHHHHHHHHHhhhcc---ceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhcC
Confidence 36667788999998887654 379999999999999988887 7899999999999999874
No 260
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=97.39 E-value=0.0009 Score=60.65 Aligned_cols=106 Identities=20% Similarity=0.289 Sum_probs=61.2
Q ss_pred CCeEEEEcCchhHHH-HHHHHh-CCCCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 140 PTRMIEIGSGTGAIT-ISLLKH-FPKLKAIAIDQSKHACDLTEQNAV-MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~-~~la~~-~~~~~v~~vDis~~al~~A~~n~~-~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
+.+|+=+|||.=-++ +.+++. .++..|+++|+++.|++.+++-+. ..++..+++|+.+|. .+. . ..-..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~-----~~~-~--~dl~~ 192 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADV-----LDV-T--YDLKE 192 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-G-----GGG----GG---
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecch-----hcc-c--ccccc
Confidence 469999999966554 444443 357789999999999999998776 567788899999998 322 1 12357
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
||+|+..-- -.+.. || =.+++.+..+.++||..+++=
T Consensus 193 ~DvV~lAal-------Vg~~~-----e~-------------K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 193 YDVVFLAAL-------VGMDA-----EP-------------KEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp -SEEEE-TT--------S---------S-------------HHHHHHHHHHHS-TTSEEEEE
T ss_pred CCEEEEhhh-------ccccc-----ch-------------HHHHHHHHHhhCCCCcEEEEe
Confidence 999887311 00111 11 147999999999999998874
No 261
>PRK11524 putative methyltransferase; Provisional
Probab=97.38 E-value=0.00061 Score=62.42 Aligned_cols=64 Identities=13% Similarity=0.053 Sum_probs=53.7
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM 185 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~ 185 (322)
-|.+-.+.|++.++...... +..|||.++|||..++++.+. +.+.+|+|++++.++.|++.+..
T Consensus 189 HPt~kP~~L~erlI~~~S~~---GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 189 HPTQKPEALLKRIILASSNP---GDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CcccChHHHHHHHHHHhCCC---CCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence 45566688888888877643 379999999999999988777 78999999999999999988753
No 262
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=97.36 E-value=0.00071 Score=59.70 Aligned_cols=81 Identities=16% Similarity=0.279 Sum_probs=49.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--CC------CCcEEEEEccCCCcccccccCcCc
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH--NV------ANQLQVFHAEIDSKGQVKNLQPDL 212 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~--~l------~~~i~~~~~D~~~~~~~~~l~~~~ 212 (322)
.+|||..+|-|.-++.+|.. +.+|+++|.||....+.+.-+++. +. ..|++++++|. .+.+. .
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~-----~~~L~--~ 147 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDA-----LEYLR--Q 147 (234)
T ss_dssp --EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-C-----CCHCC--C
T ss_pred CEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCH-----HHHHh--h
Confidence 48999999999999999876 679999999998876666544332 11 13799999998 66665 3
Q ss_pred CCCCeeEEEEcCCCCCCC
Q psy7093 213 LEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~ 230 (322)
+..+||+|..+|.|....
T Consensus 148 ~~~s~DVVY~DPMFp~~~ 165 (234)
T PF04445_consen 148 PDNSFDVVYFDPMFPERK 165 (234)
T ss_dssp HSS--SEEEE--S-----
T ss_pred cCCCCCEEEECCCCCCcc
Confidence 467899999999997644
No 263
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.33 E-value=0.0034 Score=54.77 Aligned_cols=161 Identities=13% Similarity=0.140 Sum_probs=95.5
Q ss_pred cCchhHHHHHHHHHHhccCCC-CCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy7093 118 PRSETEELIDIITDKLESSNH-TPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF 195 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~-~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~ 195 (322)
+.|-...+...++.-+..... ++.+||-+|..||....+++.-.. ...|+|||.|+...+-.-.-+++- .++-.+
T Consensus 51 W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPI 127 (229)
T PF01269_consen 51 WNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPI 127 (229)
T ss_dssp E-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEE
T ss_pred cCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---Cceeee
Confidence 456667777777666553221 347999999999999999998754 679999999996654433222221 247778
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
..|++-+..... .-+.+|+|+++-.- ++. .+-++.++..+||+||.+
T Consensus 128 l~DAr~P~~Y~~-----lv~~VDvI~~DVaQ----------p~Q------------------a~I~~~Na~~fLk~gG~~ 174 (229)
T PF01269_consen 128 LEDARHPEKYRM-----LVEMVDVIFQDVAQ----------PDQ------------------ARIAALNARHFLKPGGHL 174 (229)
T ss_dssp ES-TTSGGGGTT-----TS--EEEEEEE-SS----------TTH------------------HHHHHHHHHHHEEEEEEE
T ss_pred eccCCChHHhhc-----ccccccEEEecCCC----------hHH------------------HHHHHHHHHhhccCCcEE
Confidence 899843322222 13489999996321 110 346788888999999999
Q ss_pred EEEEcC------CCHH----HHHHHHHHcCCCCceeeEE-EecCCCCCCeEEEE
Q psy7093 276 FLETNH------DHLD----KIKEWLGICGHHMKLKLVE-NYKDFNNKDRFVEL 318 (322)
Q Consensus 276 ~~e~~~------~~~~----~~~~~l~~~~~~~~~~~v~-~~~D~~g~~R~~~~ 318 (322)
++.+.. ..++ ...+.+++.+ |+..+ +.-+-+.++-.++.
T Consensus 175 ~i~iKa~siD~t~~p~~vf~~e~~~L~~~~----~~~~e~i~LePy~~dH~~vv 224 (229)
T PF01269_consen 175 IISIKARSIDSTADPEEVFAEEVKKLKEEG----FKPLEQITLEPYERDHAMVV 224 (229)
T ss_dssp EEEEEHHHH-SSSSHHHHHHHHHHHHHCTT----CEEEEEEE-TTTSTTEEEEE
T ss_pred EEEEecCcccCcCCHHHHHHHHHHHHHHcC----CChheEeccCCCCCCcEEEE
Confidence 987732 1221 1223344433 55543 55666666666554
No 264
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.31 E-value=0.0079 Score=47.66 Aligned_cols=103 Identities=21% Similarity=0.220 Sum_probs=65.7
Q ss_pred EEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccc-cCcCcCC-CCeeE
Q psy7093 143 MIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN-LQPDLLE-QKFDL 219 (322)
Q Consensus 143 iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~-l~~~~~~-~~fDl 219 (322)
++|+|||+|... .++...+. ..++++|.++.++..++......... .+.+...|. ... ++ +.. ..||+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~--~~~~~~~d~ 122 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLG-LVDFVVADA-----LGGVLP--FEDSASFDL 122 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCC-ceEEEEecc-----ccCCCC--CCCCCceeE
Confidence 999999999976 33333222 48999999999998855544332111 157777776 321 21 223 47999
Q ss_pred EEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcC
Q psy7093 220 VVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNH 281 (322)
Q Consensus 220 Iv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~ 281 (322)
+.+........ ....+..+.+.|+|+|.+++....
T Consensus 123 ~~~~~~~~~~~---------------------------~~~~~~~~~~~l~~~g~~~~~~~~ 157 (257)
T COG0500 123 VISLLVLHLLP---------------------------PAKALRELLRVLKPGGRLVLSDLL 157 (257)
T ss_pred EeeeeehhcCC---------------------------HHHHHHHHHHhcCCCcEEEEEecc
Confidence 94433221111 247888889999999998886543
No 265
>PRK13699 putative methylase; Provisional
Probab=97.23 E-value=0.0014 Score=58.08 Aligned_cols=65 Identities=11% Similarity=0.173 Sum_probs=53.7
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc
Q psy7093 117 IPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH 186 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~ 186 (322)
-|.+-...+++.+++..... +..|||.+||||..+++..+. +.+++|+|+++...+.|.+.+...
T Consensus 144 hp~~kP~~l~~~~i~~~s~~---g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 144 HPTEKPVTSLQPLIESFTHP---NAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCcHHHHHHHHHHhCCC---CCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence 36666678888888766543 379999999999999988877 788999999999999999887654
No 266
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=97.21 E-value=0.0052 Score=55.06 Aligned_cols=104 Identities=20% Similarity=0.277 Sum_probs=77.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
+.|+=+| -.-..++++|...-..+|..+|+++..++..++-++..|+.+ ++.+..|+ -.++|+.+ ..+||+.
T Consensus 154 K~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dl-----r~plpe~~-~~kFDvf 225 (354)
T COG1568 154 KEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDL-----RNPLPEDL-KRKFDVF 225 (354)
T ss_pred CeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehh-----cccChHHH-HhhCCee
Confidence 5577777 444555666554335689999999999999999999999864 88999998 56665432 4689999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccC---cEEEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPN---GSIFLET 279 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~g---G~l~~e~ 279 (322)
+.+||+-- .-++.|+.+....||.- |++.+..
T Consensus 226 iTDPpeTi---------------------------~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 226 ITDPPETI---------------------------KALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred ecCchhhH---------------------------HHHHHHHhccHHHhcCCCccceEeeee
Confidence 99999743 22568888888888866 5665544
No 267
>KOG3178|consensus
Probab=97.21 E-value=0.0021 Score=59.45 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=70.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
...+|+|.|.|.++-.+...+|. |-+++.+...+-.+..+.. .| |+.+-+|. |...| +-|+|
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~~-~g----V~~v~gdm-----fq~~P------~~daI 240 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYLA-PG----VEHVAGDM-----FQDTP------KGDAI 240 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhhc-CC----cceecccc-----cccCC------CcCeE
Confidence 57999999999999999998776 6777777777766666654 44 77788998 66643 23687
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+.- .-.+++..+. ..+|++++++.|+|||.+++
T Consensus 241 ~mk------WiLhdwtDed------------------cvkiLknC~~sL~~~GkIiv 273 (342)
T KOG3178|consen 241 WMK------WILHDWTDED------------------CVKILKNCKKSLPPGGKIIV 273 (342)
T ss_pred EEE------eecccCChHH------------------HHHHHHHHHHhCCCCCEEEE
Confidence 762 2233343332 56999999999999998876
No 268
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.20 E-value=0.0018 Score=57.41 Aligned_cols=87 Identities=16% Similarity=0.294 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCC
Q psy7093 121 ETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200 (322)
Q Consensus 121 ~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~ 200 (322)
..+.+.+.+...+. .+.+|+|+|||-=-+++......++..++|+||+...++....-+...+.. .++...|+
T Consensus 91 ~Ld~fY~~if~~~~----~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~--~~~~v~Dl- 163 (251)
T PF07091_consen 91 NLDEFYDEIFGRIP----PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVP--HDARVRDL- 163 (251)
T ss_dssp GHHHHHHHHCCCS-------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-C--EEEEEE-T-
T ss_pred hHHHHHHHHHhcCC----CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCC--cceeEeee-
Confidence 44555555554433 247999999999999998888878899999999999999999888888865 66677788
Q ss_pred CcccccccCcCcCCCCeeEEEE
Q psy7093 201 SKGQVKNLQPDLLEQKFDLVVS 222 (322)
Q Consensus 201 ~~~~~~~l~~~~~~~~fDlIv~ 222 (322)
+... +....|+.+.
T Consensus 164 ----~~~~----~~~~~DlaLl 177 (251)
T PF07091_consen 164 ----LSDP----PKEPADLALL 177 (251)
T ss_dssp ----TTSH----TTSEESEEEE
T ss_pred ----eccC----CCCCcchhhH
Confidence 4432 3556788776
No 269
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.18 E-value=0.0012 Score=61.31 Aligned_cols=68 Identities=21% Similarity=0.309 Sum_probs=51.3
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
++.++||+||++|.++-.+++. +.+|++||..+-.- ++ .-..+|+.+..|. +...+. .+.+|
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~-----~L---~~~~~V~h~~~d~-----fr~~p~---~~~vD 272 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQ-----SL---MDTGQVEHLRADG-----FKFRPP---RKNVD 272 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCH-----hh---hCCCCEEEEeccC-----cccCCC---CCCCC
Confidence 4479999999999999999988 67999999665221 11 1145799999988 665432 56899
Q ss_pred EEEEcC
Q psy7093 219 LVVSNP 224 (322)
Q Consensus 219 lIv~NP 224 (322)
+++|+-
T Consensus 273 wvVcDm 278 (357)
T PRK11760 273 WLVCDM 278 (357)
T ss_pred EEEEec
Confidence 999963
No 270
>KOG4058|consensus
Probab=97.15 E-value=0.0012 Score=53.59 Aligned_cols=77 Identities=14% Similarity=0.264 Sum_probs=65.6
Q ss_pred chhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 120 SETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 120 p~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
|.|.+.++.++..+...+ ..+.+|+|+|.|.+-++.++. .-...+|+|+++-.+..++-.+-+.++.++..|..-|+
T Consensus 55 pAtteQv~nVLSll~~n~--~GklvDlGSGDGRiVlaaar~-g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~Rkdl 131 (199)
T KOG4058|consen 55 PATTEQVENVLSLLRGNP--KGKLVDLGSGDGRIVLAAARC-GLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDL 131 (199)
T ss_pred CccHHHHHHHHHHccCCC--CCcEEeccCCCceeehhhhhh-CCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 456677788888887753 378999999999999999887 24678999999999999999998999988899999888
No 271
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=97.13 E-value=0.0073 Score=50.80 Aligned_cols=131 Identities=21% Similarity=0.261 Sum_probs=80.0
Q ss_pred EcCchhHHHHHHHHhCC-CCEEEEEeCCHH--HHH---HHHHHHHHcCCCCcEEE-EEccCCCcccccccCcCc--CCCC
Q psy7093 146 IGSGTGAITISLLKHFP-KLKAIAIDQSKH--ACD---LTEQNAVMHNVANQLQV-FHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 146 lg~GsG~~~~~la~~~~-~~~v~~vDis~~--al~---~A~~n~~~~~l~~~i~~-~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+|=|.=.++.++++.++ ...++++-.+.. ..+ .+..|+..+.-.+ +.+ +.-|+ ..+...+ ...+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g-~~V~~~VDa------t~l~~~~~~~~~~ 75 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELG-VTVLHGVDA------TKLHKHFRLKNQR 75 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcC-CccccCCCC------CcccccccccCCc
Confidence 45566677888888877 667777655433 222 2346666553222 333 33455 2222222 4578
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCH---HHHHHHHHH
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHL---DKIKEWLGI 293 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~---~~~~~~l~~ 293 (322)
||.||.|-|..... ...-...++. -..++..+++.+..+|+++|.+.+-+...++ -.+.++.++
T Consensus 76 FDrIiFNFPH~G~~-~~~~~~~i~~------------nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~ 142 (166)
T PF10354_consen 76 FDRIIFNFPHVGGG-SEDGKRNIRL------------NRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAE 142 (166)
T ss_pred CCEEEEeCCCCCCC-ccchhHHHHH------------HHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHh
Confidence 99999999987511 1111122211 1245789999999999999999998877665 356677777
Q ss_pred cCC
Q psy7093 294 CGH 296 (322)
Q Consensus 294 ~~~ 296 (322)
.|.
T Consensus 143 ~gl 145 (166)
T PF10354_consen 143 AGL 145 (166)
T ss_pred cCC
Confidence 663
No 272
>KOG1253|consensus
Probab=97.13 E-value=0.00034 Score=67.11 Aligned_cols=105 Identities=18% Similarity=0.311 Sum_probs=85.2
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccC-cCcCCCC
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ-PDLLEQK 216 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~-~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~-~~~~~~~ 216 (322)
.+.+|||.-|+||.-++..|++.|+. +|++.|.++.+++..++|++.++..+.++..+.|+ .-..- .......
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA-----~~lM~~~~~~~~~ 183 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDA-----NVLMYEHPMVAKF 183 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchH-----HHHHHhccccccc
Confidence 34799999999999999999999875 79999999999999999999999888888888887 21111 0112468
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
||+|=.+| |.... .|+..|.+.++.||+|.+.
T Consensus 184 FDvIDLDP-yGs~s-----------------------------~FLDsAvqav~~gGLL~vT 215 (525)
T KOG1253|consen 184 FDVIDLDP-YGSPS-----------------------------PFLDSAVQAVRDGGLLCVT 215 (525)
T ss_pred cceEecCC-CCCcc-----------------------------HHHHHHHHHhhcCCEEEEE
Confidence 99998874 65433 5888899999999999884
No 273
>KOG1709|consensus
Probab=97.12 E-value=0.0057 Score=52.91 Aligned_cols=123 Identities=15% Similarity=0.197 Sum_probs=82.7
Q ss_pred CchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
|.||..+.... +.+.. ++.+||++|-|-|.+...+...-| .+=+.+|..|+.++..+.+.-.. ..+|.++.+-
T Consensus 85 ~WEtpiMha~A-~ai~t---kggrvLnVGFGMgIidT~iQe~~p-~~H~IiE~hp~V~krmr~~gw~e--k~nViil~g~ 157 (271)
T KOG1709|consen 85 RWETPIMHALA-EAIST---KGGRVLNVGFGMGIIDTFIQEAPP-DEHWIIEAHPDVLKRMRDWGWRE--KENVIILEGR 157 (271)
T ss_pred hhhhHHHHHHH-HHHhh---CCceEEEeccchHHHHHHHhhcCC-cceEEEecCHHHHHHHHhccccc--ccceEEEecc
Confidence 55665444332 22222 238999999999999988877744 56678999999998888775432 3458888887
Q ss_pred CCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 199 ~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
| .+.++ .++++.||-|.-+- +..+.. -.+.+.+.+.++|||+|++-+-
T Consensus 158 W-----eDvl~-~L~d~~FDGI~yDT-------y~e~yE-------------------dl~~~hqh~~rLLkP~gv~Syf 205 (271)
T KOG1709|consen 158 W-----EDVLN-TLPDKHFDGIYYDT-------YSELYE-------------------DLRHFHQHVVRLLKPEGVFSYF 205 (271)
T ss_pred h-----Hhhhc-cccccCcceeEeec-------hhhHHH-------------------HHHHHHHHHhhhcCCCceEEEe
Confidence 7 33333 24567899998741 111111 1457778899999999998664
Q ss_pred Ec
Q psy7093 279 TN 280 (322)
Q Consensus 279 ~~ 280 (322)
-+
T Consensus 206 Ng 207 (271)
T KOG1709|consen 206 NG 207 (271)
T ss_pred cC
Confidence 33
No 274
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.08 E-value=0.0013 Score=60.05 Aligned_cols=75 Identities=24% Similarity=0.267 Sum_probs=54.2
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEE
Q psy7093 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv 221 (322)
+++|++||.|.++..+... +-..+.++|+++.+++..+.|... .++++|+ .+.....+ .+.+|+++
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~~-------~~~~~Di-----~~~~~~~~-~~~~D~l~ 67 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFPN-------KLIEGDI-----TKIDEKDF-IPDIDLLT 67 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCCC-------CCccCcc-----ccCchhhc-CCCCCEEE
Confidence 6899999999998888776 334578999999999998888632 1456777 22211111 35799999
Q ss_pred EcCCCCCCC
Q psy7093 222 SNPPYVPSL 230 (322)
Q Consensus 222 ~NPPy~~~~ 230 (322)
..||.-..+
T Consensus 68 ~gpPCq~fS 76 (275)
T cd00315 68 GGFPCQPFS 76 (275)
T ss_pred eCCCChhhh
Confidence 999976544
No 275
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.07 E-value=0.00053 Score=63.07 Aligned_cols=92 Identities=17% Similarity=0.274 Sum_probs=63.5
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcc
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~ 203 (322)
.+++.+++.+...+ +..++|..-|.|.-+.++++.+|+.+++|+|.++.|++.|++++... .+++.++++++
T Consensus 7 Vll~Evl~~L~~~~--~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F---- 78 (310)
T PF01795_consen 7 VLLKEVLEALNPKP--GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNF---- 78 (310)
T ss_dssp TTHHHHHHHHT--T--T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-G----
T ss_pred ccHHHHHHhhCcCC--CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccH----
Confidence 45677777777553 37999999999999999999999999999999999999998876644 57899999986
Q ss_pred cccccCc---Cc-CCCCeeEEEEcCC
Q psy7093 204 QVKNLQP---DL-LEQKFDLVVSNPP 225 (322)
Q Consensus 204 ~~~~l~~---~~-~~~~fDlIv~NPP 225 (322)
..+.. .. ...++|-|+.+.-
T Consensus 79 --~~l~~~l~~~~~~~~~dgiL~DLG 102 (310)
T PF01795_consen 79 --SNLDEYLKELNGINKVDGILFDLG 102 (310)
T ss_dssp --GGHHHHHHHTTTTS-EEEEEEE-S
T ss_pred --HHHHHHHHHccCCCccCEEEEccc
Confidence 22221 11 2357888887653
No 276
>KOG2078|consensus
Probab=97.01 E-value=0.00052 Score=64.71 Aligned_cols=89 Identities=11% Similarity=0.158 Sum_probs=69.0
Q ss_pred cCeEEEeCCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH
Q psy7093 105 RDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184 (322)
Q Consensus 105 ~~~~~~v~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~ 184 (322)
.+.+|..+-+-..+++......+.+....+. +..|.|++||.|-+++.++++ +.+|++-|.+++++++.+.|++
T Consensus 219 ~~~~Fk~DfskVYWnsRL~~Eherlsg~fk~----gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~ 292 (495)
T KOG2078|consen 219 GGERFKFDFSKVYWNSRLSHEHERLSGLFKP----GEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIK 292 (495)
T ss_pred CCeeEEEecceEEeeccchhHHHHHhhccCC----cchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhcc
Confidence 4566666655444555545555555554332 368999999999999999998 6999999999999999999999
Q ss_pred HcCCCCc-EEEEEccC
Q psy7093 185 MHNVANQ-LQVFHAEI 199 (322)
Q Consensus 185 ~~~l~~~-i~~~~~D~ 199 (322)
.+.+... ++++..|+
T Consensus 293 lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 293 LNKVDPSAIEIFNMDA 308 (495)
T ss_pred ccccchhheeeecccH
Confidence 9887665 88888887
No 277
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=96.96 E-value=0.029 Score=50.49 Aligned_cols=145 Identities=12% Similarity=0.182 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhccC-CCCCCeEEEEcCc---hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEcc
Q psy7093 123 EELIDIITDKLESS-NHTPTRMIEIGSG---TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198 (322)
Q Consensus 123 e~lv~~i~~~~~~~-~~~~~~iLDlg~G---sG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D 198 (322)
..++..++..+... +. ..+||+||| .|..--......|.++|+-||++|.++..++.-+.... ..+..++++|
T Consensus 53 R~Fl~RaVr~la~~~GI--rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~-~g~t~~v~aD 129 (267)
T PF04672_consen 53 RAFLRRAVRYLAEEAGI--RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP-RGRTAYVQAD 129 (267)
T ss_dssp HHHHHHHHHHHHCTT-----EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T-TSEEEEEE--
T ss_pred HHHHHHHHHHHHHhcCc--ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC-CccEEEEeCC
Confidence 34455556665544 33 579999999 34544444445689999999999999998886654332 2348899999
Q ss_pred CCCcccccccC---cCcC-CCCeeEEEEc-CCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 199 IDSKGQVKNLQ---PDLL-EQKFDLVVSN-PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 199 ~~~~~~~~~l~---~~~~-~~~fDlIv~N-PPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
+++++.+-.-+ ..+. ..+.-+++.. ..|++..+ + ...++....+.|.||.
T Consensus 130 ~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~---------------------d----p~~iv~~l~d~lapGS 184 (267)
T PF04672_consen 130 LRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDD---------------------D----PAGIVARLRDALAPGS 184 (267)
T ss_dssp TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGC---------------------T----HHHHHHHHHCCS-TT-
T ss_pred CCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCcc---------------------C----HHHHHHHHHHhCCCCc
Confidence 96654321100 0111 2233343332 12222111 1 3588999999999999
Q ss_pred EEEEEEcCC--CH---HHHHHHHHHcC
Q psy7093 274 SIFLETNHD--HL---DKIKEWLGICG 295 (322)
Q Consensus 274 ~l~~e~~~~--~~---~~~~~~l~~~~ 295 (322)
+|++.+... .+ +.+.+++.+.+
T Consensus 185 ~L~ish~t~d~~p~~~~~~~~~~~~~~ 211 (267)
T PF04672_consen 185 YLAISHATDDGAPERAEALEAVYAQAG 211 (267)
T ss_dssp EEEEEEEB-TTSHHHHHHHHHHHHHCC
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHcCC
Confidence 999987532 23 33445555544
No 278
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.83 E-value=0.13 Score=44.19 Aligned_cols=128 Identities=12% Similarity=0.152 Sum_probs=87.2
Q ss_pred ccCchhHHHHHHHHHHhccCC-CCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q psy7093 117 IPRSETEELIDIITDKLESSN-HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF 195 (322)
Q Consensus 117 iprp~te~lv~~i~~~~~~~~-~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~ 195 (322)
.+.|....+...+++-+...+ .++.+||=||..||....+++.-.+...+++||.|+....-.-.-++. -+++-.+
T Consensus 53 ~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PI 129 (231)
T COG1889 53 EWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK---RPNIIPI 129 (231)
T ss_pred eeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh---CCCceee
Confidence 356777778877777665322 134799999999999999999988878899999999876544333332 1346677
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEE
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l 275 (322)
..|+.-+..... .-+..|+|+.+-. + +.. .+-++.++...|++||.+
T Consensus 130 L~DA~~P~~Y~~-----~Ve~VDviy~DVA--------Q--p~Q------------------a~I~~~Na~~FLk~~G~~ 176 (231)
T COG1889 130 LEDARKPEKYRH-----LVEKVDVIYQDVA--------Q--PNQ------------------AEILADNAEFFLKKGGYV 176 (231)
T ss_pred ecccCCcHHhhh-----hcccccEEEEecC--------C--chH------------------HHHHHHHHHHhcccCCeE
Confidence 888822211111 1246899998521 1 110 346788899999999988
Q ss_pred EEEEc
Q psy7093 276 FLETN 280 (322)
Q Consensus 276 ~~e~~ 280 (322)
++.+.
T Consensus 177 ~i~iK 181 (231)
T COG1889 177 VIAIK 181 (231)
T ss_pred EEEEE
Confidence 87664
No 279
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.71 E-value=0.0044 Score=57.32 Aligned_cols=75 Identities=23% Similarity=0.327 Sum_probs=51.6
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEE
Q psy7093 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv 221 (322)
+++|++||.|.+++.+... .-..+.++|+++.+.+.-+.|.. ....+|+ .+.....++. .+|+++
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a-g~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di-----~~~~~~~l~~-~~D~l~ 66 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA-GFEVVWAVEIDPDACETYKANFP--------EVICGDI-----TEIDPSDLPK-DVDLLI 66 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT-TEEEEEEEESSHHHHHHHHHHHT--------EEEESHG-----GGCHHHHHHH-T-SEEE
T ss_pred cEEEEccCccHHHHHHHhc-CcEEEEEeecCHHHHHhhhhccc--------ccccccc-----cccccccccc-cceEEE
Confidence 6899999999999998887 22467899999999999988874 5677888 2211111233 599999
Q ss_pred EcCCCCCCCC
Q psy7093 222 SNPPYVPSLD 231 (322)
Q Consensus 222 ~NPPy~~~~~ 231 (322)
.-||.-+.+.
T Consensus 67 ggpPCQ~fS~ 76 (335)
T PF00145_consen 67 GGPPCQGFSI 76 (335)
T ss_dssp EE---TTTST
T ss_pred eccCCceEec
Confidence 9999765443
No 280
>KOG1099|consensus
Probab=96.68 E-value=0.0026 Score=55.39 Aligned_cols=111 Identities=21% Similarity=0.329 Sum_probs=72.8
Q ss_pred CeEEEEcCchhHHHHHHHHhCCC---------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPK---------LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD 211 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~---------~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~ 211 (322)
.+++|+|...|..+..+++++-. .++++||+.+-+ -+++ |.-+++|++...-.+.+-..
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~G-V~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEG-VIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCc-eEEeecccCCHhHHHHHHHH
Confidence 68999999999999999887521 249999997632 2232 77789998543322222223
Q ss_pred cCCCCeeEEEEcC-CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 212 LLEQKFDLVVSNP-PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 212 ~~~~~fDlIv~NP-Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+...+.|+|||+- |-+ ..++.++..+. .+++...+.-+..+|+|||.++--+
T Consensus 111 fggekAdlVvcDGAPDv--TGlHd~DEy~Q--------------~qLllaAl~i~t~Vlk~Gg~FVaKi 163 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDV--TGLHDLDEYVQ--------------AQLLLAALNIATCVLKPGGSFVAKI 163 (294)
T ss_pred hCCCCccEEEeCCCCCc--cccccHHHHHH--------------HHHHHHHHHHHhheecCCCeeehhh
Confidence 4556899999962 322 22334443332 1334566777889999999988655
No 281
>KOG2793|consensus
Probab=96.58 E-value=0.077 Score=47.36 Aligned_cols=119 Identities=19% Similarity=0.181 Sum_probs=70.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-----cCCCCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM-----HNVANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~-----~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
.+||++|+|+|..++.+|.. ..++|+..|... .+...+.|... .++...+.+...+|.+..+.. ...+
T Consensus 88 ~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~-~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~-----~~~~ 160 (248)
T KOG2793|consen 88 INVLELGSGTGLVGILAALL-LGAEVVLTDLPK-VVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVS-----FRLP 160 (248)
T ss_pred eeEEEecCCccHHHHHHHHH-hcceeccCCchh-hHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHh-----hccC
Confidence 67999999999888888886 478999999854 44444444322 223334666666662221111 1223
Q ss_pred C-eeEEEE-cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCC--HHHHHHHH
Q psy7093 216 K-FDLVVS-NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH--LDKIKEWL 291 (322)
Q Consensus 216 ~-fDlIv~-NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~--~~~~~~~l 291 (322)
. ||+|++ ++-|.+.. +..++.-...+|..+|.++++..-+. .......+
T Consensus 161 ~~~DlilasDvvy~~~~---------------------------~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~~ 213 (248)
T KOG2793|consen 161 NPFDLILASDVVYEEES---------------------------FEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVLL 213 (248)
T ss_pred CcccEEEEeeeeecCCc---------------------------chhHHHHHHHHHhcCCeEEEEEecccchHHHHHHHH
Confidence 3 899987 33333221 33566667778888887777665333 33344444
Q ss_pred HH
Q psy7093 292 GI 293 (322)
Q Consensus 292 ~~ 293 (322)
.+
T Consensus 214 ~~ 215 (248)
T KOG2793|consen 214 FK 215 (248)
T ss_pred hh
Confidence 33
No 282
>KOG3350|consensus
Probab=96.52 E-value=0.071 Score=44.74 Aligned_cols=172 Identities=13% Similarity=0.168 Sum_probs=97.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHc----CCCceeEecceeecCeEEEeCCCCcccCchh-HHHHHHHHHHhccCCCCCCeEEE
Q psy7093 71 NTELTNDQITHLNKLCECRLA----RMPVQYIIKEWNFRDLTLKMTPPVFIPRSET-EELIDIITDKLESSNHTPTRMIE 145 (322)
Q Consensus 71 ~~~l~~~~~~~~~~~~~rr~~----~~p~~yi~g~~~f~~~~~~v~~~~~iprp~t-e~lv~~i~~~~~~~~~~~~~iLD 145 (322)
...|+.+.+..+++++..+.+ .++..++++.. +.++.. +.|.-.++| ..++...++.... ..+|.-
T Consensus 9 ~~~LsA~aLAaL~eF~aEq~k~~e~~~~~~~~i~~~---~eDwQl--sqfwy~~eta~~La~e~v~~s~e----~~rIac 79 (217)
T KOG3350|consen 9 DLQLSADALAALNEFLAEQQKRIEEEENQSDIIEKI---GEDWQL--SQFWYSDETARKLAAERVEASGE----GSRIAC 79 (217)
T ss_pred ccccCHHHHHHHHHHHHHHHhhhhccCchhhhhhhc---ccchhh--hhhhcCHHHHHHHHHHHHhhccc----CceEEE
Confidence 445788888888888766654 34443444321 111111 112222333 3334444443332 267877
Q ss_pred EcCchhHHHHHHHH-hCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcC
Q psy7093 146 IGSGTGAITISLLK-HFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNP 224 (322)
Q Consensus 146 lg~GsG~~~~~la~-~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NP 224 (322)
+.|-|=.+-.-.-. ..|..+|+..|.+.. ...+| -+|+.-|...+ ..++.. ..++||+||++|
T Consensus 80 vS~Psly~y~k~re~~~~~~~v~lfEfDkR--------Fe~yg----~eFvfYDyN~p---~dlp~~-lk~~fdiivaDP 143 (217)
T KOG3350|consen 80 VSCPSLYVYQKKREIEIPHDQVYLFEFDKR--------FELYG----TEFVFYDYNCP---LDLPDE-LKAHFDIIVADP 143 (217)
T ss_pred EeCchHHhhhhhhhccCCceeEEEEEehhh--------HHhcc----ceeEEeccCCC---CCCHHH-HHhcccEEEeCC
Confidence 77776552111111 126778999998753 34444 35666665221 112221 135799999999
Q ss_pred CCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHH
Q psy7093 225 PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGI 293 (322)
Q Consensus 225 Py~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~ 293 (322)
||....- ..+-..-+..+.+++-.+++.+|..-.+.+.+++..
T Consensus 144 PfL~~eC--------------------------l~Kts~tik~L~r~~~kvilCtGeimee~~s~~l~~ 186 (217)
T KOG3350|consen 144 PFLSEEC--------------------------LAKTSETIKRLQRNQKKVILCTGEIMEEWASALLPV 186 (217)
T ss_pred ccccchh--------------------------hhhhHHHHHHHhcCCceEEEechhHhHHHHHHHhhh
Confidence 9987553 334555567778888889998998877777777653
No 283
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.52 E-value=0.025 Score=49.18 Aligned_cols=130 Identities=17% Similarity=0.250 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhccCCC--CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCC
Q psy7093 123 EELIDIITDKLESSNH--TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~--~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~ 200 (322)
-.+++|+.+....... .+.++||+||=+....++. .+-..|+.+|+++. .-.+.+.|+
T Consensus 33 K~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~---~~~fdvt~IDLns~----------------~~~I~qqDF- 92 (219)
T PF11968_consen 33 KWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST---SGWFDVTRIDLNSQ----------------HPGILQQDF- 92 (219)
T ss_pred HHHHHHhhhhccccccccccceEEeecccCCCCcccc---cCceeeEEeecCCC----------------CCCceeecc-
Confidence 4455666555433221 2369999998766544432 23356999999862 134567887
Q ss_pred Ccccccc-cCcCcCCCCeeEEEEcCC--CCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcE---
Q psy7093 201 SKGQVKN-LQPDLLEQKFDLVVSNPP--YVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS--- 274 (322)
Q Consensus 201 ~~~~~~~-l~~~~~~~~fDlIv~NPP--y~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~--- 274 (322)
++. ++. ...++||+|++..- |++... - --.+++.+.++|+|+|.
T Consensus 93 ----m~rplp~-~~~e~FdvIs~SLVLNfVP~p~-------~------------------RG~Ml~r~~~fL~~~g~~~~ 142 (219)
T PF11968_consen 93 ----MERPLPK-NESEKFDVISLSLVLNFVPDPK-------Q------------------RGEMLRRAHKFLKPPGLSLF 142 (219)
T ss_pred ----ccCCCCC-CcccceeEEEEEEEEeeCCCHH-------H------------------HHHHHHHHHHHhCCCCccCc
Confidence 432 332 24678999987321 443221 1 12799999999999999
Q ss_pred --EEEEEcC--------CCHHHHHHHHHHcCCCCceeeEEEe
Q psy7093 275 --IFLETNH--------DHLDKIKEWLGICGHHMKLKLVENY 306 (322)
Q Consensus 275 --l~~e~~~--------~~~~~~~~~l~~~~~~~~~~~v~~~ 306 (322)
|++.++. -..+.+.++++.-| |..++..
T Consensus 143 ~~LFlVlP~~Cv~NSRy~~~~~l~~im~~LG----f~~~~~~ 180 (219)
T PF11968_consen 143 PSLFLVLPLPCVTNSRYMTEERLREIMESLG----FTRVKYK 180 (219)
T ss_pred ceEEEEeCchHhhcccccCHHHHHHHHHhCC----cEEEEEE
Confidence 8887642 23677888998876 6666543
No 284
>KOG1269|consensus
Probab=96.44 E-value=0.0067 Score=57.34 Aligned_cols=103 Identities=17% Similarity=0.206 Sum_probs=74.1
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
..++|+|||.|.....++.. ....++|+|.++.-+..+..-.....+.++-.++.+|+ .... +++..||.+
T Consensus 112 ~~~~~~~~g~~~~~~~i~~f-~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~-----~~~~---fedn~fd~v 182 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAVF-KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADF-----GKMP---FEDNTFDGV 182 (364)
T ss_pred ccccccCcCcCchhHHHHHh-ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhh-----hcCC---CCccccCcE
Confidence 57999999999999888776 56899999999988887777666666666666677776 3221 357789988
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
-+. ++..|.| ++ ...+++..+.++|||+.+.+
T Consensus 183 ~~l--------------d~~~~~~--------~~----~~~y~Ei~rv~kpGG~~i~~ 214 (364)
T KOG1269|consen 183 RFL--------------EVVCHAP--------DL----EKVYAEIYRVLKPGGLFIVK 214 (364)
T ss_pred EEE--------------eecccCC--------cH----HHHHHHHhcccCCCceEEeH
Confidence 762 1112222 22 35667778889999998773
No 285
>KOG3987|consensus
Probab=96.34 E-value=0.00099 Score=57.15 Aligned_cols=92 Identities=24% Similarity=0.352 Sum_probs=59.9
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.+.++||+|+|.|-++..++..+ .+|+++|.|..|....++ .+.. + +-..++ +. .+-+||
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~f--eevyATElS~tMr~rL~k----k~yn--V-l~~~ew--------~~---t~~k~d 171 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTF--EEVYATELSWTMRDRLKK----KNYN--V-LTEIEW--------LQ---TDVKLD 171 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchH--HHHHHHHhhHHHHHHHhh----cCCc--e-eeehhh--------hh---cCceee
Confidence 45899999999999999998874 469999999988655442 2211 1 011122 21 234799
Q ss_pred EEEE-cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc-CcEEEE
Q psy7093 219 LVVS-NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP-NGSIFL 277 (322)
Q Consensus 219 lIv~-NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~-gG~l~~ 277 (322)
+|.| |. -.+.|.| -++++.+..+|.| +|.+++
T Consensus 172 li~clNl-------------LDRc~~p--------------~kLL~Di~~vl~psngrviv 205 (288)
T KOG3987|consen 172 LILCLNL-------------LDRCFDP--------------FKLLEDIHLVLAPSNGRVIV 205 (288)
T ss_pred hHHHHHH-------------HHhhcCh--------------HHHHHHHHHHhccCCCcEEE
Confidence 9987 21 1122333 2678888889998 887655
No 286
>KOG2798|consensus
Probab=96.21 E-value=0.041 Score=50.33 Aligned_cols=39 Identities=18% Similarity=0.167 Sum_probs=31.3
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+.+||-.|||.|.++..+|.. +-++.|-|.|--|+-...
T Consensus 151 ki~iLvPGaGlGRLa~dla~~--G~~~qGNEfSy~Mli~S~ 189 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACL--GFKCQGNEFSYFMLICSS 189 (369)
T ss_pred CceEEecCCCchhHHHHHHHh--cccccccHHHHHHHHHHH
Confidence 368999999999999999998 556777788877764443
No 287
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=96.19 E-value=0.028 Score=52.59 Aligned_cols=151 Identities=17% Similarity=0.120 Sum_probs=85.8
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+++|++||.|.+.+.+... +---+.++|+++.+++.-+.|... ..+...|+ .+.....+....+|++
T Consensus 4 ~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di-----~~~~~~~~~~~~~Dvl 71 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFPH------GDIILGDI-----KELDGEALRKSDVDVL 71 (328)
T ss_pred ceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCCC------CceeechH-----hhcChhhccccCCCEE
Confidence 68999999999999888776 223577999999999888877642 34455666 2221111111178999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc----C---CCHHHHHHHHHH
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN----H---DHLDKIKEWLGI 293 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~----~---~~~~~~~~~l~~ 293 (322)
+.-||.-..+....- ...-+|...|+ -.+ .++...++| -++++|== . ...+.+.+.|++
T Consensus 72 igGpPCQ~FS~aG~r---~~~~D~R~~L~---------~~~-~r~I~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~ 137 (328)
T COG0270 72 IGGPPCQDFSIAGKR---RGYDDPRGSLF---------LEF-IRLIEQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEE 137 (328)
T ss_pred EeCCCCcchhhcCcc---cCCcCccceee---------HHH-HHHHHhhCC-CEEEEecCchHHhcCchHHHHHHHHHHH
Confidence 999997654432211 01112222221 122 233445677 56777621 1 134566677777
Q ss_pred cCCCCceeeEEEecC---CCCCCeEEEE
Q psy7093 294 CGHHMKLKLVENYKD---FNNKDRFVEL 318 (322)
Q Consensus 294 ~~~~~~~~~v~~~~D---~~g~~R~~~~ 318 (322)
.|+. ....+-.-+| -..+.|+++.
T Consensus 138 ~GY~-~~~~ilna~dyGvPQ~ReRvfii 164 (328)
T COG0270 138 LGYG-VEFNILNAADYGVPQSRERVFIV 164 (328)
T ss_pred cCCc-chHheeeHHhcCCCCCccEEEEE
Confidence 7751 1112222233 3456777765
No 288
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.022 Score=52.82 Aligned_cols=39 Identities=23% Similarity=0.490 Sum_probs=30.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCC-EEEEEeCCHHHHH
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACD 177 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~-~v~~vDis~~al~ 177 (322)
.+.+|||+|.|.|.-..++-.-+|.. .++.++.|+..-+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrk 152 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRK 152 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHH
Confidence 45789999999998888887888864 5778888874433
No 289
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.09 E-value=0.035 Score=50.62 Aligned_cols=73 Identities=16% Similarity=0.319 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 123 e~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~-~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
..++..+++.+..... ...+|..-|.|.-+-.+++.+|. .+++|+|.++.|++.|++....++ +|++++++++
T Consensus 9 pVLl~E~i~~L~~~~~--giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F 82 (314)
T COG0275 9 PVLLNEVVELLAPKPD--GIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNF 82 (314)
T ss_pred chHHHHHHHhcccCCC--cEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcH
Confidence 4567788888877643 89999999999999999999875 469999999999999999887665 6799999875
No 290
>KOG1501|consensus
Probab=95.97 E-value=0.014 Score=55.41 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=49.2
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~ 197 (322)
..+||+|+|||.+++.++.+- +-.|+++|.=..+.+.|++-..++|.+++|+++.-
T Consensus 68 v~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred EEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence 469999999999999888884 55799999999999999999999999888887754
No 291
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.81 E-value=0.026 Score=54.81 Aligned_cols=135 Identities=12% Similarity=0.225 Sum_probs=81.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKL--KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~--~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
..|+|+.+|.|.|+.+|... |-+ +|+-+ ..+..+.+. ..-|+-+ ...|+ -+.++. -..+||
T Consensus 367 RNVMDMnAg~GGFAAAL~~~-~VWVMNVVP~-~~~ntL~vI----ydRGLIG----~yhDW-----CE~fsT--YPRTYD 429 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDD-PVWVMNVVPV-SGPNTLPVI----YDRGLIG----VYHDW-----CEAFST--YPRTYD 429 (506)
T ss_pred eeeeeecccccHHHHHhccC-CceEEEeccc-CCCCcchhh----hhcccch----hccch-----hhccCC--CCcchh
Confidence 46999999999999999765 322 23333 222222222 2223321 33566 444432 356899
Q ss_pred EEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCC
Q psy7093 219 LVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHM 298 (322)
Q Consensus 219 lIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~ 298 (322)
+|-+|--|....+. . -...++-+.-|.|+|||++++--...--..++.++..-.|
T Consensus 430 LlHA~~lfs~~~~r-------------C----------~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i~~~lrW-- 484 (506)
T PF03141_consen 430 LLHADGLFSLYKDR-------------C----------EMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKIAKSLRW-- 484 (506)
T ss_pred heehhhhhhhhccc-------------c----------cHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHHHHhCcc--
Confidence 99987544322211 0 1347888899999999999984444445667777777654
Q ss_pred ceeeEEEecCC---CCCCeEEEEEE
Q psy7093 299 KLKLVENYKDF---NNKDRFVELKL 320 (322)
Q Consensus 299 ~~~~v~~~~D~---~g~~R~~~~~~ 320 (322)
+ +.++... .+.+++++++|
T Consensus 485 --~-~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 485 --E-VRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred --e-EEEEecCCCCCCCceEEEEEC
Confidence 2 3333333 44789998876
No 292
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=95.76 E-value=0.0094 Score=51.92 Aligned_cols=68 Identities=26% Similarity=0.356 Sum_probs=40.5
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCC----ChhHHHHHHHHHHhccCccCcEEEEEEcCCCHH--HHHHH
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH----DGLNIIKPICVFGSNYLKPNGSIFLETNHDHLD--KIKEW 290 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~----~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~--~~~~~ 290 (322)
.|+|+.+|||....+... ..-.++. +=++.+...+.++.++|||||.+++-++..... ....+
T Consensus 1 VdliitDPPY~~~~~~~~-----------~~~~~~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~~~~~~~~~~~~~~~ 69 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDYNN-----------YFDYGDNKNHEEYLEWMEEWLKECYRVLKPGGSIFIFIDDREIAGFLFELA 69 (231)
T ss_dssp EEEEEE---TSSSCS----------------CSCHCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE-CCEECTHHHHHH
T ss_pred CCEEEECCCCCCCCCcch-----------hhhccCCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEEecchhhhHHHHHHH
Confidence 489999999987665200 0000111 113456788999999999999999988877654 34444
Q ss_pred HHHcC
Q psy7093 291 LGICG 295 (322)
Q Consensus 291 l~~~~ 295 (322)
.+..|
T Consensus 70 ~~~~g 74 (231)
T PF01555_consen 70 LEIFG 74 (231)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 45444
No 293
>PHA01634 hypothetical protein
Probab=95.53 E-value=0.037 Score=43.97 Aligned_cols=72 Identities=13% Similarity=0.183 Sum_probs=53.6
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
.+++|+|+|.+.|.-++..+.+ +..+|+++|.++...+..++|++.+.+-++. +...+| +. .-+.||
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~k~nnI~DK~-v~~~eW---------~~--~Y~~~D 94 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVCAYFNICDKA-VMKGEW---------NG--EYEDVD 94 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHhhhheeeece-eecccc---------cc--cCCCcc
Confidence 3489999999999999998887 5678999999999999999999877543322 122234 11 235788
Q ss_pred EEEEc
Q psy7093 219 LVVSN 223 (322)
Q Consensus 219 lIv~N 223 (322)
+.+.+
T Consensus 95 i~~iD 99 (156)
T PHA01634 95 IFVMD 99 (156)
T ss_pred eEEEE
Confidence 77763
No 294
>KOG2352|consensus
Probab=95.52 E-value=0.13 Score=49.91 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=72.3
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
.+++-+|||.-.++..+-+. .-..|+.+|+|+.+++.....-.+. ..-..+...|. .. + .++.+.||+|
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~-----~~-l--~fedESFdiV 118 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDM-----DQ-L--VFEDESFDIV 118 (482)
T ss_pred ceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhccccC--CcceEEEEecc-----hh-c--cCCCcceeEE
Confidence 38999999999999888776 4567999999999988776432211 12367778887 22 2 2467889999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhH---HHHHHHHHHhccCccCcEEEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLN---IIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~---~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
+-=+ ..+ +|+.+++..- .....+....++|++||..+..+
T Consensus 119 IdkG------tlD-------------al~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svt 161 (482)
T KOG2352|consen 119 IDKG------TLD-------------ALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVT 161 (482)
T ss_pred EecC------ccc-------------cccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEE
Confidence 8721 111 2222222221 34567788899999999865543
No 295
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=95.06 E-value=0.32 Score=43.18 Aligned_cols=115 Identities=14% Similarity=0.201 Sum_probs=80.7
Q ss_pred EEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcC-CCCeeEEEE
Q psy7093 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLL-EQKFDLVVS 222 (322)
Q Consensus 144 LDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~-~~~fDlIv~ 222 (322)
|..-|||-.++..+.+. +-++.++|+.|+=....+.|.. -..++.+.++|- +..+...++ .++=-+|+.
T Consensus 93 l~~YpGSP~lA~~llR~--qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG-----~~~l~a~LPP~erRglVLI 162 (279)
T COG2961 93 LRYYPGSPLLARQLLRE--QDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDG-----FLALKAHLPPKERRGLVLI 162 (279)
T ss_pred cccCCCCHHHHHHHcch--hceeeeeecCccHHHHHHHHhC---CCcceEEEecCc-----HHHHhhhCCCCCcceEEEe
Confidence 88999999999888776 6789999999988888888876 235699999997 554433333 345679999
Q ss_pred cCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCc--cCcEEEEEEcCCCHHHHHHHHHHc
Q psy7093 223 NPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLK--PNGSIFLETNHDHLDKIKEWLGIC 294 (322)
Q Consensus 223 NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk--~gG~l~~e~~~~~~~~~~~~l~~~ 294 (322)
+|||-...+ |+++++.....++ ++|...+=.+--+.+.++++++..
T Consensus 163 DPPfE~~~e--------------------------Y~rvv~~l~~~~kRf~~g~yaiWYPik~r~~~~~f~~~L 210 (279)
T COG2961 163 DPPFELKDE--------------------------YQRVVEALAEAYKRFATGTYAIWYPIKDRRQIRRFLRAL 210 (279)
T ss_pred CCCcccccH--------------------------HHHHHHHHHHHHHhhcCceEEEEEeecchHHHHHHHHHH
Confidence 999976554 4455554444444 567655544445556666666553
No 296
>KOG1227|consensus
Probab=95.03 E-value=0.011 Score=53.67 Aligned_cols=59 Identities=15% Similarity=0.243 Sum_probs=50.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
..|+|+.+|.|++++...-..+...|++.|.+|.+++..++|+..+++..+..++.+|-
T Consensus 196 eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~ 254 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDN 254 (351)
T ss_pred chhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccc
Confidence 68999999999999944444467899999999999999999999998877777777776
No 297
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=94.80 E-value=0.35 Score=43.35 Aligned_cols=122 Identities=18% Similarity=0.252 Sum_probs=72.7
Q ss_pred CCeEEEEcCchhHHHHHHHHh---C--CCCEEEEEeC--------------------------CHHHHHHHHHHHHHcCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKH---F--PKLKAIAIDQ--------------------------SKHACDLTEQNAVMHNV 188 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~---~--~~~~v~~vDi--------------------------s~~al~~A~~n~~~~~l 188 (322)
+..|+|.||--|..++.++.. + ++.++++.|. ....++..+.|+.++++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 478999999988766655432 2 3556777762 01245566666666664
Q ss_pred -CCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhc
Q psy7093 189 -ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSN 267 (322)
Q Consensus 189 -~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~ 267 (322)
.+++.++.+.+ .+.++. .+..++-++-.+- + .||| ....++....
T Consensus 155 ~~~~v~~vkG~F-----~dTLp~-~p~~~IAll~lD~------D---------lYes-------------T~~aLe~lyp 200 (248)
T PF05711_consen 155 LDDNVRFVKGWF-----PDTLPD-APIERIALLHLDC------D---------LYES-------------TKDALEFLYP 200 (248)
T ss_dssp SSTTEEEEES-H-----HHHCCC--TT--EEEEEE------------------SHHH-------------HHHHHHHHGG
T ss_pred CcccEEEECCcc-----hhhhcc-CCCccEEEEEEec------c---------chHH-------------HHHHHHHHHh
Confidence 45799999998 455543 2344565555531 1 2444 5678889999
Q ss_pred cCccCcEEEEEEcCC---CHHHHHHHHHHcCC
Q psy7093 268 YLKPNGSIFLETNHD---HLDKIKEWLGICGH 296 (322)
Q Consensus 268 ~Lk~gG~l~~e~~~~---~~~~~~~~l~~~~~ 296 (322)
.|.|||++++. .+. ..+.+.+.+.++|.
T Consensus 201 rl~~GGiIi~D-DY~~~gcr~AvdeF~~~~gi 231 (248)
T PF05711_consen 201 RLSPGGIIIFD-DYGHPGCRKAVDEFRAEHGI 231 (248)
T ss_dssp GEEEEEEEEES-STTTHHHHHHHHHHHHHTT-
T ss_pred hcCCCeEEEEe-CCCChHHHHHHHHHHHHcCC
Confidence 99999999883 333 25668888888874
No 298
>KOG1331|consensus
Probab=94.76 E-value=0.042 Score=49.63 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=75.8
Q ss_pred CCCCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q psy7093 112 TPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQ 191 (322)
Q Consensus 112 ~~~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~ 191 (322)
.+..+.|.|.+..+++ .... +..++|.|||.|-... ..|...++|.|++...+..|++. + .
T Consensus 26 s~tr~~~Wp~v~qfl~----~~~~----gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~~----~---~ 86 (293)
T KOG1331|consen 26 SATRAAPWPMVRQFLD----SQPT----GSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKRS----G---G 86 (293)
T ss_pred cccccCccHHHHHHHh----ccCC----cceeeecccCCcccCc----CCCcceeeecchhhhhccccccC----C---C
Confidence 3444555665544332 2222 3689999999996542 23778899999999988877631 1 1
Q ss_pred EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc
Q psy7093 192 LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP 271 (322)
Q Consensus 192 i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~ 271 (322)
..+..+|+ +.. + .....||.+++ ....+.+...-++ ..++++..+.|+|
T Consensus 87 ~~~~~ad~-----l~~-p--~~~~s~d~~ls------iavihhlsT~~RR-----------------~~~l~e~~r~lrp 135 (293)
T KOG1331|consen 87 DNVCRADA-----LKL-P--FREESFDAALS------IAVIHHLSTRERR-----------------ERALEELLRVLRP 135 (293)
T ss_pred ceeehhhh-----hcC-C--CCCCccccchh------hhhhhhhhhHHHH-----------------HHHHHHHHHHhcC
Confidence 24667777 332 2 35678998876 3344455444332 4789999999999
Q ss_pred CcEEEEE
Q psy7093 272 NGSIFLE 278 (322)
Q Consensus 272 gG~l~~e 278 (322)
||...+-
T Consensus 136 gg~~lvy 142 (293)
T KOG1331|consen 136 GGNALVY 142 (293)
T ss_pred CCceEEE
Confidence 9986653
No 299
>KOG2352|consensus
Probab=94.73 E-value=0.065 Score=51.87 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=78.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc----CcCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP----DLLEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~----~~~~~ 215 (322)
...+|-+|-|+|.+...+...+|..++++|+++|.+++.|+.+.....- .+..++-.|- +..+.. .-...
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dG-----l~~~~~~~k~~~~~~ 369 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADG-----LDFLQRTAKSQQEDI 369 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhc-----hHHHHHHhhcccccc
Confidence 3678999999999999999999999999999999999999998754431 2344444444 322211 11345
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
+||+++.+- .+.+.+.+. -|..+ -+...++..+...|.|.|.+++..-
T Consensus 370 ~~dvl~~dv---ds~d~~g~~------~pp~~--------fva~~~l~~~k~~l~p~g~f~inlv 417 (482)
T KOG2352|consen 370 CPDVLMVDV---DSKDSHGMQ------CPPPA--------FVAQVALQPVKMILPPRGMFIINLV 417 (482)
T ss_pred CCcEEEEEC---CCCCcccCc------CCchH--------HHHHHHHHHHhhccCccceEEEEEe
Confidence 899998742 111111111 11111 1246788888999999999988654
No 300
>COG4889 Predicted helicase [General function prediction only]
Probab=94.57 E-value=0.3 Score=50.68 Aligned_cols=259 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHcCCCChHHHHHHHHHHHhCCCCcccccccccCCCCCHHHHHHHHHHHHHHHcCCCceeEecceeec
Q psy7093 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFR 105 (322)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~rr~~~~p~~yi~g~~~f~ 105 (322)
+.+++..-...|..+|.+....+.+-+-+.+-- .-....-...+.+.+..+.++ |+
T Consensus 747 vsqam~kmv~~l~~agle~Et~~Le~lYeSVr~---------rA~~~~sa~~kQ~~Ik~LY~~---------------FF 802 (1518)
T COG4889 747 VSQAMDKMVDKLSDAGLEGETEDLENLYESVRT---------RAAEAKSAKSKQELIKNLYNT---------------FF 802 (1518)
T ss_pred HHHHHHHHHHHHhhccccchhhhHHHHHHHHHH---------HHhhccccccHHHHHHHHHHH---------------HH
Q ss_pred CeEEEeCCCCcccCchhHHHHHHHHHHh---------ccCCCCCCeEEEEcCchhHHHHHHHHhCCC---------CEEE
Q psy7093 106 DLTLKMTPPVFIPRSETEELIDIITDKL---------ESSNHTPTRMIEIGSGTGAITISLLKHFPK---------LKAI 167 (322)
Q Consensus 106 ~~~~~v~~~~~iprp~te~lv~~i~~~~---------~~~~~~~~~iLDlg~GsG~~~~~la~~~~~---------~~v~ 167 (322)
...|+-....+----..-++|+.++... ......+.+|||.++|||.+...++..+-. ....
T Consensus 803 k~aFKkqsE~LGIVyTPiEVVDFIlra~d~vlkkHFg~~l~d~~vhilDpFtGTGtFi~RlL~alIs~edl~rKf~~eLh 882 (1518)
T COG4889 803 KEAFKKQSEKLGIVYTPIEVVDFILRATDDVLKKHFGTDLNDQSVHILDPFTGTGTFIVRLLSALISDEDLKRKFQKELH 882 (1518)
T ss_pred HHHHHHhHhhcceeecchhHhhHHHHhcchHHHHHhCCCcccCCeeeecCCCCccHHHHHHHHHhcCHHHHHHHHHhhhh
Q ss_pred EEeCCHHHHHHHHHHHHHc--------------CCCCcEEEEEccCCCcccccccCcCcCCC---CeeEEEEcCCCCCCC
Q psy7093 168 AIDQSKHACDLTEQNAVMH--------------NVANQLQVFHAEIDSKGQVKNLQPDLLEQ---KFDLVVSNPPYVPSL 230 (322)
Q Consensus 168 ~vDis~~al~~A~~n~~~~--------------~l~~~i~~~~~D~~~~~~~~~l~~~~~~~---~fDlIv~NPPy~~~~ 230 (322)
+.||---+.-.|--|+... -+.+.++....|-.+...+....+.+..+ +.-+|+.||||....
T Consensus 883 A~eIvLLsYYIAaiNIe~t~~~~~gd~~~F~giaLtDtf~~~Eed~~d~~~f~~n~erlkrq~~ipI~VIiGNPPYS~gq 962 (1518)
T COG4889 883 AFEIVLLSYYIAAINIEQTAQNRDGDLKNFKGIALTDTFDYLEEDTLDGDIFGYNNERLKRQKEIPIRVIIGNPPYSAGQ 962 (1518)
T ss_pred HHHHHHHHHHHHHhhHHHHhhhhcCCcccCCCceecchhhhhccccccccccCccHHHHHhhcCCceEEEeCCCCCcccc
Q ss_pred CCCCCChhhhcccccccccCCCCh-----------hHHHHHHHHHHhccCccCcEEEEEEcCCC-----HHHHHHHHHHc
Q psy7093 231 DIPKLEPEIALYEDIKALDGGHDG-----------LNIIKPICVFGSNYLKPNGSIFLETNHDH-----LDKIKEWLGIC 294 (322)
Q Consensus 231 ~~~~l~~~v~~~ep~~al~~g~~g-----------l~~~~~~l~~~~~~Lk~gG~l~~e~~~~~-----~~~~~~~l~~~ 294 (322)
.-+.-...-..|+...+..-..-| .|-|-+.++-+.+.++.+|++-|...... .+-++.-+.+.
T Consensus 963 ks~ndnn~nl~ypkLd~rv~~sy~k~STA~nknsl~Dsyira~RwasDri~d~GVigFV~NggfIDgnsaDG~R~sla~d 1042 (1518)
T COG4889 963 KSENDNNQNLSYPKLDKRVYESYGKNSTATNKNSLRDSYIRAIRWASDRIKDNGVIGFVVNGGFIDGNSADGFRKSLAQD 1042 (1518)
T ss_pred cCcCccccccccchHHHHHHHHHhccchhhcccchHHHHHHHHHHHhhhcccCceEEEEecCceecCccchHHHHHHHHH
Q ss_pred CCCCceeeEEEecCCCCCCe
Q psy7093 295 GHHMKLKLVENYKDFNNKDR 314 (322)
Q Consensus 295 ~~~~~~~~v~~~~D~~g~~R 314 (322)
|..+-+. .+-|..|
T Consensus 1043 -----fs~iYvl-NLrGn~R 1056 (1518)
T COG4889 1043 -----FSHIYVL-NLRGNQR 1056 (1518)
T ss_pred -----hhhheEE-eccCCcc
No 301
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=94.46 E-value=2 Score=38.38 Aligned_cols=134 Identities=18% Similarity=0.180 Sum_probs=79.9
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCC----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK----LKAIAIDQSKHACDLTEQNAVMHNVANQLQ 193 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~----~~v~~vDis~~al~~A~~n~~~~~l~~~i~ 193 (322)
-|.|++.+-....+...... +...+|+|+|+..-+..+...+.. .+.+.+|+|...++..-+.+...-..-.+.
T Consensus 59 TRtEaaIl~~~a~Eia~~~g--~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~ 136 (321)
T COG4301 59 TRTEAAILQARAAEIASITG--ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVN 136 (321)
T ss_pred chhHHHHHHHHHHHHHHhhC--cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEe
Confidence 36677666655555544332 268999999998777666665533 689999999988876555443322111255
Q ss_pred EEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCc
Q psy7093 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNG 273 (322)
Q Consensus 194 ~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG 273 (322)
-+++|. ...+.. ++.+.--+++. ..+.+..+.++. ...|+.+....|+||-
T Consensus 137 ~l~~~~-----~~~La~-~~~~~~Rl~~f-----lGStlGN~tp~e------------------~~~Fl~~l~~a~~pGd 187 (321)
T COG4301 137 ALCGDY-----ELALAE-LPRGGRRLFVF-----LGSTLGNLTPGE------------------CAVFLTQLRGALRPGD 187 (321)
T ss_pred ehhhhH-----HHHHhc-ccCCCeEEEEE-----ecccccCCChHH------------------HHHHHHHHHhcCCCcc
Confidence 667776 333321 22222222222 112223333322 3579999999999999
Q ss_pred EEEEEEcCC
Q psy7093 274 SIFLETNHD 282 (322)
Q Consensus 274 ~l~~e~~~~ 282 (322)
++++-+.-.
T Consensus 188 ~~LlGvDl~ 196 (321)
T COG4301 188 YFLLGVDLR 196 (321)
T ss_pred eEEEecccc
Confidence 998866443
No 302
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.42 E-value=0.4 Score=46.98 Aligned_cols=88 Identities=16% Similarity=0.167 Sum_probs=54.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccc--ccc-----CcCc
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV--KNL-----QPDL 212 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~--~~l-----~~~~ 212 (322)
..+++|++||.|.+...+-.. +...|.++|+++.|.+.-+.|.... + ....+.+|+.+-... ..+ ...+
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G~~~v~a~Eid~~A~~TY~~N~~~~--p-~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-GGQCVFTSEWNKHAVRTYKANWYCD--P-ATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-CCEEEEEEechHHHHHHHHHHcCCC--C-ccceeccChhhCccccccccchhhhhhhh
Confidence 368999999999999988665 3346789999999998888774211 1 133445555110000 000 0000
Q ss_pred --CCCCeeEEEEcCCCCCCCC
Q psy7093 213 --LEQKFDLVVSNPPYVPSLD 231 (322)
Q Consensus 213 --~~~~fDlIv~NPPy~~~~~ 231 (322)
....+|+++.-||.-+.+.
T Consensus 164 ~~~~p~~DvL~gGpPCQ~FS~ 184 (467)
T PRK10458 164 RQHIPDHDVLLAGFPCQPFSL 184 (467)
T ss_pred hccCCCCCEEEEcCCCCccch
Confidence 1135899999999766543
No 303
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.38 E-value=0.12 Score=48.36 Aligned_cols=91 Identities=15% Similarity=0.279 Sum_probs=60.5
Q ss_pred CCeEEEEcC-chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEc-cCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIGS-GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA-EIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg~-GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~-D~~~~~~~~~l~~~~~~~~f 217 (322)
+.+|+=.|+ |.|.+++.+|+... ++|+++|.+++-++.|++ +|.. .++.+ |. +..+.+ .+.|
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~----lGAd---~~i~~~~~---~~~~~~-----~~~~ 230 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKK----LGAD---HVINSSDS---DALEAV-----KEIA 230 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHH----hCCc---EEEEcCCc---hhhHHh-----HhhC
Confidence 466666665 47789999999875 999999999999888874 3432 22332 11 002222 2249
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
|+|+..-| . .-+..+.+.|++||.+++ +|
T Consensus 231 d~ii~tv~-~--------------------------------~~~~~~l~~l~~~G~~v~-vG 259 (339)
T COG1064 231 DAIIDTVG-P--------------------------------ATLEPSLKALRRGGTLVL-VG 259 (339)
T ss_pred cEEEECCC-h--------------------------------hhHHHHHHHHhcCCEEEE-EC
Confidence 99988433 1 345667889999999887 44
No 304
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.24 E-value=0.29 Score=50.24 Aligned_cols=123 Identities=15% Similarity=0.233 Sum_probs=76.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC-------C-----CCEEEEEeCCH---HHHHHHHH-----------HHHH-----cCC-
Q psy7093 141 TRMIEIGSGTGAITISLLKHF-------P-----KLKAIAIDQSK---HACDLTEQ-----------NAVM-----HNV- 188 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~-------~-----~~~v~~vDis~---~al~~A~~-----------n~~~-----~~l- 188 (322)
.+|+|+|=|+|.-.+...+.+ | ..+++++|..| +-+..+.. -... .++
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 789999999997666665443 2 35899999754 22322221 1111 121
Q ss_pred -----CC--cEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHH
Q psy7093 189 -----AN--QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261 (322)
Q Consensus 189 -----~~--~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~ 261 (322)
.+ +++++.+|+ .+.++. + ...+|+++.++ |.+... ++.+ -..+
T Consensus 139 ~~~~~~~~~~l~l~~gd~-----~~~~~~-~-~~~~d~~~lD~-FsP~~n-----p~~W-----------------~~~~ 188 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDA-----NELLPQ-L-DARADAWFLDG-FAPAKN-----PDMW-----------------SPNL 188 (662)
T ss_pred EEEecCCcEEEEEEecCH-----HHHHHh-c-cccccEEEeCC-CCCccC-----hhhc-----------------cHHH
Confidence 11 345667787 443332 1 25699999985 333222 1211 1368
Q ss_pred HHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCC
Q psy7093 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGH 296 (322)
Q Consensus 262 l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~ 296 (322)
++...++++|||.+.= +.....+++-|...|+
T Consensus 189 ~~~l~~~~~~~~~~~t---~t~a~~vr~~l~~~GF 220 (662)
T PRK01747 189 FNALARLARPGATLAT---FTSAGFVRRGLQEAGF 220 (662)
T ss_pred HHHHHHHhCCCCEEEE---eehHHHHHHHHHHcCC
Confidence 8889999999999863 5677889999998874
No 305
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=93.76 E-value=0.15 Score=45.55 Aligned_cols=78 Identities=21% Similarity=0.322 Sum_probs=45.3
Q ss_pred EEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc-CCCCeeEEEE
Q psy7093 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL-LEQKFDLVVS 222 (322)
Q Consensus 144 LDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~-~~~~fDlIv~ 222 (322)
+..-+||=.++..+++. +-+.+..|+.+...+..+.|+.. ..++++++.|- ++.+...+ +..+=-+|+.
T Consensus 62 l~~YPGSP~ia~~llR~--qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG-----~~~l~allPP~~rRglVLI 131 (245)
T PF04378_consen 62 LRFYPGSPAIAARLLRE--QDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDG-----YEGLKALLPPPERRGLVLI 131 (245)
T ss_dssp --EEE-HHHHHHHHS-T--TSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-H-----HHHHHHH-S-TTS-EEEEE
T ss_pred cCcCCCCHHHHHHhCCc--cceEEEEecCchHHHHHHHHhcc---CCccEEEeCch-----hhhhhhhCCCCCCCeEEEE
Confidence 67788999998888776 67899999999999988887654 34799999997 65432222 2345679999
Q ss_pred cCCCCCCCC
Q psy7093 223 NPPYVPSLD 231 (322)
Q Consensus 223 NPPy~~~~~ 231 (322)
+|||-...+
T Consensus 132 DPpYE~~~d 140 (245)
T PF04378_consen 132 DPPYEQKDD 140 (245)
T ss_dssp -----STTH
T ss_pred CCCCCCchH
Confidence 999977655
No 306
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=93.69 E-value=0.068 Score=42.29 Aligned_cols=89 Identities=22% Similarity=0.281 Sum_probs=58.1
Q ss_pred chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCC
Q psy7093 149 GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVP 228 (322)
Q Consensus 149 GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~ 228 (322)
|.|..++.+|+..+ .+|+++|.++..++.+++ +|.. .++..+-. ...+.+........+|+|+-..+
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~Ga~---~~~~~~~~--~~~~~i~~~~~~~~~d~vid~~g--- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----LGAD---HVIDYSDD--DFVEQIRELTGGRGVDVVIDCVG--- 67 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----TTES---EEEETTTS--SHHHHHHHHTTTSSEEEEEESSS---
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----hccc---cccccccc--ccccccccccccccceEEEEecC---
Confidence 57899999999986 999999999998888764 4422 12222110 00111111123357999987422
Q ss_pred CCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEc
Q psy7093 229 SLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETN 280 (322)
Q Consensus 229 ~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~ 280 (322)
....++.+..+|+++|.+++ +|
T Consensus 68 -----------------------------~~~~~~~~~~~l~~~G~~v~-vg 89 (130)
T PF00107_consen 68 -----------------------------SGDTLQEAIKLLRPGGRIVV-VG 89 (130)
T ss_dssp -----------------------------SHHHHHHHHHHEEEEEEEEE-ES
T ss_pred -----------------------------cHHHHHHHHHHhccCCEEEE-EE
Confidence 02577888999999999987 44
No 307
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=93.65 E-value=0.08 Score=40.82 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=26.5
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQS 172 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis 172 (322)
...++|+|||+|.+.--|.++ +...+|+|.-
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R 89 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSE--GYPGWGIDAR 89 (112)
T ss_pred CCceEEccCCchHHHHHHHhC--CCCccccccc
Confidence 367999999999998888887 7788999974
No 308
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.27 E-value=0.15 Score=47.38 Aligned_cols=72 Identities=26% Similarity=0.326 Sum_probs=50.8
Q ss_pred EEEEcCchhHHHHHHHHhCCCCE-EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEE
Q psy7093 143 MIEIGSGTGAITISLLKHFPKLK-AIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221 (322)
Q Consensus 143 iLDlg~GsG~~~~~la~~~~~~~-v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv 221 (322)
|+|++||.|.++..+... +.+ +.++|+++.+.+.-+.|.. + .+..+|+ .+..... ...+|+++
T Consensus 1 vidLF~G~GG~~~Gl~~a--G~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di-----~~~~~~~--~~~~dvl~ 64 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA--GFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDI-----TKISPSD--IPDFDILL 64 (315)
T ss_pred CEEEecCccHHHHHHHHc--CCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccCh-----hhhhhhh--CCCcCEEE
Confidence 589999999999888766 455 5689999999998888752 2 3345777 2211111 23589999
Q ss_pred EcCCCCCCC
Q psy7093 222 SNPPYVPSL 230 (322)
Q Consensus 222 ~NPPy~~~~ 230 (322)
.-||.-..+
T Consensus 65 gg~PCq~fS 73 (315)
T TIGR00675 65 GGFPCQPFS 73 (315)
T ss_pred ecCCCcccc
Confidence 999965544
No 309
>KOG1562|consensus
Probab=93.04 E-value=0.22 Score=45.38 Aligned_cols=125 Identities=21% Similarity=0.282 Sum_probs=83.8
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH--NV-ANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~--~l-~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
.++++|=+|.|-|......+++-.--++.-+|++...++..++-.... +. ..++.++-+|- +..+.. ...+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG-----~~fl~~-~~~~ 194 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDG-----FLFLED-LKEN 194 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccH-----HHHHHH-hccC
Confidence 358999999999999888887722247899999999999988876543 33 34799999987 544432 2467
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE--cCCCHHHHHHHH
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET--NHDHLDKIKEWL 291 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~--~~~~~~~~~~~l 291 (322)
+||+|+.+ +.+. .. |..+ -+.+.++....+.||++|+++..- -+-+...+++..
T Consensus 195 ~~dVii~d-----ssdp--vg-------pa~~--------lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r 250 (337)
T KOG1562|consen 195 PFDVIITD-----SSDP--VG-------PACA--------LFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGR 250 (337)
T ss_pred CceEEEEe-----cCCc--cc-------hHHH--------HHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHH
Confidence 99999984 1111 01 1111 124688889999999999987632 233344444443
No 310
>KOG0024|consensus
Probab=92.71 E-value=0.58 Score=43.26 Aligned_cols=43 Identities=16% Similarity=0.307 Sum_probs=39.3
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
.+.+||=+|+| .|..+...|+.+..++|+.+|+++..++.|++
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 34789999999 68899999999999999999999999999986
No 311
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=92.61 E-value=0.43 Score=44.75 Aligned_cols=73 Identities=19% Similarity=0.312 Sum_probs=50.5
Q ss_pred CCcccCchhH-----HHHHHHHHHhccCCC-CCCeEEEEcCchhHHHHHHHHhC--------CCCEEEEEeCCHHHHHHH
Q psy7093 114 PVFIPRSETE-----ELIDIITDKLESSNH-TPTRMIEIGSGTGAITISLLKHF--------PKLKAIAIDQSKHACDLT 179 (322)
Q Consensus 114 ~~~iprp~te-----~lv~~i~~~~~~~~~-~~~~iLDlg~GsG~~~~~la~~~--------~~~~v~~vDis~~al~~A 179 (322)
+.|+-.|+.. .+..++++.+..... .+..++++|.|+|.++.-+++.. ...++..+|.|+...+.-
T Consensus 46 GDFiTApels~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Q 125 (370)
T COG1565 46 GDFITAPELSQLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQ 125 (370)
T ss_pred CCeeechhHHHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHH
Confidence 4555444443 334555555554332 24689999999999988877653 357999999999988887
Q ss_pred HHHHHHc
Q psy7093 180 EQNAVMH 186 (322)
Q Consensus 180 ~~n~~~~ 186 (322)
+++++..
T Consensus 126 k~~L~~~ 132 (370)
T COG1565 126 KETLKAT 132 (370)
T ss_pred HHHHhcc
Confidence 7777654
No 312
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.55 E-value=0.49 Score=42.30 Aligned_cols=83 Identities=6% Similarity=0.070 Sum_probs=49.4
Q ss_pred CeEEEEcCch-hHHHHHHHHhC--CCCEEEEEeCCH---HHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--
Q psy7093 141 TRMIEIGSGT-GAITISLLKHF--PKLKAIAIDQSK---HACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL-- 212 (322)
Q Consensus 141 ~~iLDlg~Gs-G~~~~~la~~~--~~~~v~~vDis~---~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~-- 212 (322)
+++|=.|.++ +.++.++++.+ .+++|+.++.+. +.++... .... ..++.++..|+.++...+.+....
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~---~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~ 83 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELA---DTLE-GQESLLLPCDVTSDEEITACFETIKE 83 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHH---HHcC-CCceEEEecCCCCHHHHHHHHHHHHH
Confidence 6788888763 66777766654 367888886542 3333222 2221 235788899996655433221111
Q ss_pred CCCCeeEEEEcCCCC
Q psy7093 213 LEQKFDLVVSNPPYV 227 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~ 227 (322)
..+++|++|.|..+.
T Consensus 84 ~~g~ld~lv~nag~~ 98 (257)
T PRK08594 84 EVGVIHGVAHCIAFA 98 (257)
T ss_pred hCCCccEEEECcccC
Confidence 136799999998654
No 313
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=92.48 E-value=0.34 Score=43.46 Aligned_cols=45 Identities=20% Similarity=0.382 Sum_probs=35.7
Q ss_pred CeEEEEcCchhHHHHHHHHhCC--------CCEEEEEeCCHHHHHHHHHHHHH
Q psy7093 141 TRMIEIGSGTGAITISLLKHFP--------KLKAIAIDQSKHACDLTEQNAVM 185 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~--------~~~v~~vDis~~al~~A~~n~~~ 185 (322)
.+|+|+|+|+|.++.-++..+. ..+++.||.|+...+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 6899999999999998888643 35899999999888887777654
No 314
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=92.44 E-value=0.57 Score=42.73 Aligned_cols=64 Identities=13% Similarity=0.145 Sum_probs=50.9
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc
Q psy7093 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH 186 (322)
Q Consensus 118 prp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~ 186 (322)
|.+....+.+..+..... ++..|||..+|||..+++.... +..++|+|+++..++.+.+.+...
T Consensus 204 p~~~P~~l~~r~i~~~s~---~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 204 PAQKPLALIERLIRDYSF---PGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCChHHHHHHHHHhcCC---CCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence 455556777777766332 3489999999999999887776 788999999999999999887654
No 315
>KOG0822|consensus
Probab=92.39 E-value=0.39 Score=47.06 Aligned_cols=74 Identities=19% Similarity=0.334 Sum_probs=53.5
Q ss_pred CeEEEEcCchhHHHHHHHHh----CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKH----FPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~----~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
.+|+=+|.|-|-+.-+..+. ....+++++|.+|.|+...+. .......++|+++.+|. ..++. +..+
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DM------R~w~a--p~eq 439 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDM------RKWNA--PREQ 439 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccc------cccCC--chhh
Confidence 46889999999775544432 234689999999999877654 55556678999999998 33331 2367
Q ss_pred eeEEEEc
Q psy7093 217 FDLVVSN 223 (322)
Q Consensus 217 fDlIv~N 223 (322)
.|++||-
T Consensus 440 ~DI~VSE 446 (649)
T KOG0822|consen 440 ADIIVSE 446 (649)
T ss_pred ccchHHH
Confidence 8999983
No 316
>KOG1201|consensus
Probab=92.21 E-value=0.76 Score=42.00 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=68.8
Q ss_pred CCCeEEEEcCchh---HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cC
Q psy7093 139 TPTRMIEIGSGTG---AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LL 213 (322)
Q Consensus 139 ~~~~iLDlg~GsG---~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~ 213 (322)
.+..||==|.|+| .++..+|++ +++++..|++....+...+.++..| ++..+..|+.+..+...+... -.
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~r--g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKR--GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHh--CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 3467888888888 567777777 6799999999999988888888775 588899998543322221111 13
Q ss_pred CCCeeEEEEcCCCCCCCCCCCCChhh
Q psy7093 214 EQKFDLVVSNPPYVPSLDIPKLEPEI 239 (322)
Q Consensus 214 ~~~fDlIv~NPPy~~~~~~~~l~~~v 239 (322)
.+..|++|.|.--.+....-+++++.
T Consensus 112 ~G~V~ILVNNAGI~~~~~ll~~~d~e 137 (300)
T KOG1201|consen 112 VGDVDILVNNAGIVTGKKLLDCSDEE 137 (300)
T ss_pred cCCceEEEeccccccCCCccCCCHHH
Confidence 46899999998877777666655543
No 317
>PRK07576 short chain dehydrogenase; Provisional
Probab=92.16 E-value=0.88 Score=40.71 Aligned_cols=83 Identities=14% Similarity=0.193 Sum_probs=51.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|++++.+++.+......+...+ .++.++..|+.++.....+.... ..++
T Consensus 10 k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~ 86 (264)
T PRK07576 10 KNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEFGP 86 (264)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5677666 5677777666543 36789999998877655544444333 34778899985544332211100 1246
Q ss_pred eeEEEEcCCC
Q psy7093 217 FDLVVSNPPY 226 (322)
Q Consensus 217 fDlIv~NPPy 226 (322)
.|++|.|...
T Consensus 87 iD~vi~~ag~ 96 (264)
T PRK07576 87 IDVLVSGAAG 96 (264)
T ss_pred CCEEEECCCC
Confidence 8999998753
No 318
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=92.06 E-value=0.46 Score=45.24 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=36.3
Q ss_pred CCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHH
Q psy7093 140 PTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182 (322)
Q Consensus 140 ~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~n 182 (322)
+.+||..|+|+ |.+++.+|+..+..+++++|.+++.++.+++.
T Consensus 185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 46899999998 99999999997655799999999988887753
No 319
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.06 E-value=0.66 Score=41.41 Aligned_cols=85 Identities=13% Similarity=0.173 Sum_probs=50.5
Q ss_pred CeEEEEcCch-hHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGT-GAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~Gs-G~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+.+|=.|+++ +.++.++++.+ .+++|+.++.+....+.+++-.+..+ .+.++..|+.+....+.+.... ..+
T Consensus 11 k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~g 87 (258)
T PRK07533 11 KRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEEWG 87 (258)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHHcC
Confidence 6788888776 36777666654 36789989988654433333222222 2456788985544332221111 125
Q ss_pred CeeEEEEcCCCCC
Q psy7093 216 KFDLVVSNPPYVP 228 (322)
Q Consensus 216 ~fDlIv~NPPy~~ 228 (322)
+.|++|.|.-+.+
T Consensus 88 ~ld~lv~nAg~~~ 100 (258)
T PRK07533 88 RLDFLLHSIAFAP 100 (258)
T ss_pred CCCEEEEcCccCC
Confidence 7899999986543
No 320
>PRK08339 short chain dehydrogenase; Provisional
Probab=92.00 E-value=1 Score=40.29 Aligned_cols=85 Identities=6% Similarity=0.056 Sum_probs=51.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC-cCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD-LLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~-~~~~~f 217 (322)
+++|=.|+ +|.++.++++.+ .+.+|+.++.++..++.+.+.+.... ..++.++..|+.++...+.+... ...++.
T Consensus 9 k~~lItGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~i 86 (263)
T PRK08339 9 KLAFTTAS-SKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGEP 86 (263)
T ss_pred CEEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCCC
Confidence 55665554 445555555543 36799999999887776665554321 23588899999665433322111 112578
Q ss_pred eEEEEcCCCC
Q psy7093 218 DLVVSNPPYV 227 (322)
Q Consensus 218 DlIv~NPPy~ 227 (322)
|++|.|.-..
T Consensus 87 D~lv~nag~~ 96 (263)
T PRK08339 87 DIFFFSTGGP 96 (263)
T ss_pred cEEEECCCCC
Confidence 9999987543
No 321
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.00 E-value=0.79 Score=40.77 Aligned_cols=82 Identities=11% Similarity=0.126 Sum_probs=48.9
Q ss_pred CeEEEEcCch-hHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGT-GAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~Gs-G~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.|.++ +.++.++++.+ .+.+|+.++.+....+.++ ... ..++.++..|+.++...+.+.... ..+
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~----~~~-~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 82 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQ----KLV-DEEDLLVECDVASDESIERAFATIKERVG 82 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHH----hhc-cCceeEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 6788777664 56666666654 3678998887744332222 211 234778899996544333221111 126
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
++|++|.|..+.
T Consensus 83 ~iD~lv~nAg~~ 94 (252)
T PRK06079 83 KIDGIVHAIAYA 94 (252)
T ss_pred CCCEEEEccccc
Confidence 799999998764
No 322
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.56 E-value=0.85 Score=40.37 Aligned_cols=86 Identities=10% Similarity=0.130 Sum_probs=53.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|++ |.++.++++.+ .+.+|+.++.+++.++.....+...+ .++.++..|+.++.....+.... ..++
T Consensus 10 k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T PRK05867 10 KRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAELGG 86 (253)
T ss_pred CEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 677777754 45555555443 26799999999888776665555443 35788899985544332211100 1257
Q ss_pred eeEEEEcCCCCCC
Q psy7093 217 FDLVVSNPPYVPS 229 (322)
Q Consensus 217 fDlIv~NPPy~~~ 229 (322)
.|++|.|......
T Consensus 87 id~lv~~ag~~~~ 99 (253)
T PRK05867 87 IDIAVCNAGIITV 99 (253)
T ss_pred CCEEEECCCCCCC
Confidence 8999999876543
No 323
>KOG2651|consensus
Probab=91.29 E-value=0.77 Score=43.32 Aligned_cols=40 Identities=20% Similarity=0.428 Sum_probs=34.4
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
..++|+|.|-|.++..++-.+ +..|+++|-|..+.+.|++
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence 679999999999999998886 6899999999777666654
No 324
>KOG1596|consensus
Probab=91.29 E-value=0.87 Score=40.38 Aligned_cols=127 Identities=10% Similarity=0.169 Sum_probs=75.9
Q ss_pred CchhHHHHHHHHHHhccCC-CCCCeEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEE
Q psy7093 119 RSETEELIDIITDKLESSN-HTPTRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196 (322)
Q Consensus 119 rp~te~lv~~i~~~~~~~~-~~~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~ 196 (322)
.|-...|...++--+.... .+..+||=||+++|..-..+..-. |...|++||.|+.+=...- |..+.. . +|-.+.
T Consensus 135 nPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~-nmAkkR-t-NiiPIi 211 (317)
T KOG1596|consen 135 NPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLI-NMAKKR-T-NIIPII 211 (317)
T ss_pred ChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHH-HHhhcc-C-Cceeee
Confidence 4445555555543332211 144799999999999877777654 5678999999875533222 211111 2 355566
Q ss_pred ccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEE
Q psy7093 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276 (322)
Q Consensus 197 ~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~ 276 (322)
-|++-+.... ..-+-.|+|+++-|-. +-.+.+.-++..+||+||.++
T Consensus 212 EDArhP~KYR-----mlVgmVDvIFaDvaqp----------------------------dq~RivaLNA~~FLk~gGhfv 258 (317)
T KOG1596|consen 212 EDARHPAKYR-----MLVGMVDVIFADVAQP----------------------------DQARIVALNAQYFLKNGGHFV 258 (317)
T ss_pred ccCCCchhee-----eeeeeEEEEeccCCCc----------------------------hhhhhhhhhhhhhhccCCeEE
Confidence 6762211111 1124689999964311 113456678899999999999
Q ss_pred EEEcC
Q psy7093 277 LETNH 281 (322)
Q Consensus 277 ~e~~~ 281 (322)
+.+..
T Consensus 259 isika 263 (317)
T KOG1596|consen 259 ISIKA 263 (317)
T ss_pred EEEec
Confidence 98754
No 325
>PRK06125 short chain dehydrogenase; Provisional
Probab=90.99 E-value=2.2 Score=37.87 Aligned_cols=88 Identities=14% Similarity=0.206 Sum_probs=54.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
+++|=.|+ +|.++..++..+ .+.+|++++.+++.++.+...+.... ..++.++..|+.++.....+.. ..++.|
T Consensus 8 k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~--~~g~id 83 (259)
T PRK06125 8 KRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAA--EAGDID 83 (259)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHH--HhCCCC
Confidence 56776675 455665555433 26799999999887766655554332 2357888999855443322211 125789
Q ss_pred EEEEcCCCCCCCCC
Q psy7093 219 LVVSNPPYVPSLDI 232 (322)
Q Consensus 219 lIv~NPPy~~~~~~ 232 (322)
.+|.|+-.......
T Consensus 84 ~lv~~ag~~~~~~~ 97 (259)
T PRK06125 84 ILVNNAGAIPGGGL 97 (259)
T ss_pred EEEECCCCCCCCCc
Confidence 99999865443333
No 326
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=90.78 E-value=1.4 Score=38.99 Aligned_cols=90 Identities=17% Similarity=0.127 Sum_probs=53.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++||=.| |+|.++.++++.+ .+.+|+.+|.+...++.....+....-..++.++..|+.+......+.... ..++
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 81 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR 81 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4577766 5666666666544 367999999988766555444332211135888999985433222111100 1257
Q ss_pred eeEEEEcCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLD 231 (322)
Q Consensus 217 fDlIv~NPPy~~~~~ 231 (322)
.|.||.|..+.....
T Consensus 82 id~vv~~ag~~~~~~ 96 (259)
T PRK12384 82 VDLLVYNAGIAKAAF 96 (259)
T ss_pred CCEEEECCCcCCCCC
Confidence 899999986554433
No 327
>PRK07063 short chain dehydrogenase; Provisional
Probab=90.65 E-value=1.8 Score=38.32 Aligned_cols=86 Identities=10% Similarity=0.110 Sum_probs=53.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++.++++.+ .+.+|+.++.+++.++.....+...+...++.++..|+.++.....+.... ..+.
T Consensus 8 k~vlVtGa-s~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 86 (260)
T PRK07063 8 KVALVTGA-AQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAFGP 86 (260)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 56776665 455666555543 367999999998887766665554222345888999995544332211100 1257
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|.+|.|....
T Consensus 87 id~li~~ag~~ 97 (260)
T PRK07063 87 LDVLVNNAGIN 97 (260)
T ss_pred CcEEEECCCcC
Confidence 89999987643
No 328
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=90.10 E-value=0.9 Score=36.20 Aligned_cols=91 Identities=18% Similarity=0.315 Sum_probs=54.7
Q ss_pred EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc
Q psy7093 192 LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP 271 (322)
Q Consensus 192 i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~ 271 (322)
+++..+|+ .+.++. ....||+|+.++ |.+.... +. +. ..+++.+.++++|
T Consensus 33 L~L~~gDa-----~~~l~~--l~~~~Da~ylDg-FsP~~nP-----el--Ws---------------~e~~~~l~~~~~~ 82 (124)
T PF05430_consen 33 LTLWFGDA-----REMLPQ--LDARFDAWYLDG-FSPAKNP-----EL--WS---------------EELFKKLARLSKP 82 (124)
T ss_dssp EEEEES-H-----HHHHHH--B-T-EEEEEE-S-S-TTTSG-----GG--SS---------------HHHHHHHHHHEEE
T ss_pred EEEEEcHH-----HHHHHh--CcccCCEEEecC-CCCcCCc-----cc--CC---------------HHHHHHHHHHhCC
Confidence 56677787 333332 236899999985 5554432 21 11 2688889999999
Q ss_pred CcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCCCeEEEEEE
Q psy7093 272 NGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320 (322)
Q Consensus 272 gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~~R~~~~~~ 320 (322)
||.+.- +.....+++-|...| |. |+..+-.-++.-++.+.+
T Consensus 83 ~~~l~T---ys~a~~Vr~~L~~aG----F~-v~~~~g~g~Kr~~~~a~~ 123 (124)
T PF05430_consen 83 GGTLAT---YSSAGAVRRALQQAG----FE-VEKVPGFGRKREMLRAVK 123 (124)
T ss_dssp EEEEEE---S--BHHHHHHHHHCT----EE-EEEEE-STTSSEEEEEEC
T ss_pred CcEEEE---eechHHHHHHHHHcC----CE-EEEcCCCCCcchheEEEc
Confidence 998754 556677999999987 54 555665555555666654
No 329
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=90.06 E-value=6.2 Score=34.45 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=53.2
Q ss_pred CeEEEEcCchh----HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCC
Q psy7093 141 TRMIEIGSGTG----AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG----~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~ 216 (322)
..|++.+|+.| .++++.|.+.-+.+++++-.++..+...++.+...++.+.++|+.++. .+.+-. .-..
T Consensus 43 kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~-----~e~~~~--~~~~ 115 (218)
T PF07279_consen 43 KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEA-----PEEVMP--GLKG 115 (218)
T ss_pred eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCC-----HHHHHh--hccC
Confidence 67999976644 456666666667899999999888888888887778777789988875 222111 1235
Q ss_pred eeEEEEc
Q psy7093 217 FDLVVSN 223 (322)
Q Consensus 217 fDlIv~N 223 (322)
.|+++.+
T Consensus 116 iDF~vVD 122 (218)
T PF07279_consen 116 IDFVVVD 122 (218)
T ss_pred CCEEEEe
Confidence 7877763
No 330
>KOG3924|consensus
Probab=89.94 E-value=0.44 Score=45.05 Aligned_cols=93 Identities=16% Similarity=0.269 Sum_probs=62.2
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH-------cCC-CCcEEEE
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVM-------HNV-ANQLQVF 195 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~-------~~l-~~~i~~~ 195 (322)
.....+.+.++.. +.....|+|+|.|.....+|..-....-+|+++....-+.|..|... .|- .+.+..+
T Consensus 179 ~ql~si~dEl~~g--~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i 256 (419)
T KOG3924|consen 179 EQLRSIVDELKLG--PADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETI 256 (419)
T ss_pred HHHHHHHHHhccC--CCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeec
Confidence 3344555555544 33789999999999998888876566778999887777777666432 232 4568888
Q ss_pred EccCCCcccccccCcCcCCCCeeEEEEc
Q psy7093 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSN 223 (322)
Q Consensus 196 ~~D~~~~~~~~~l~~~~~~~~fDlIv~N 223 (322)
+++..++.....+ ....++|++|
T Consensus 257 ~gsf~~~~~v~eI-----~~eatvi~vN 279 (419)
T KOG3924|consen 257 HGSFLDPKRVTEI-----QTEATVIFVN 279 (419)
T ss_pred ccccCCHHHHHHH-----hhcceEEEEe
Confidence 9988443322222 3457888886
No 331
>PF05063 MT-A70: MT-A70 ; InterPro: IPR007757 N6-methyladenosine (m6A) is present at internal sites in eukaryotic mRNA. It is present only within a defined sequence context that has been shown to be conserved across species from plants to man. Despite its ubiquity and conserved sequence specificity, the functional significance of this modification remains a mystery [], []. MT-A70 is the S-adenosylmethionine-binding subunit of human mRNA N6-adenosine-methyltransferase (MTase), an enzyme that sequence-specifically methylates adenines in pre-mRNAs. Proteins with sequence similarity to MT-A70 have been identified in eukaryotes and prokaryotes. The resulting family is defined by sequence similarity in the carboxyl-proximal regions of the respective proteins. The amino-proximal regions of the eukaryotic proteins are highly diverse, often Pro-rich, and are conserved only within individual subfamilies []. Corresponding regions are not present in prokaryotic members of the family. MT-A70-like proteins contain examples of some of the consensus methyltransferase motifs that have been derived from mutational and structural studies of bacterial DNA methyltransferases, including the universally conserved motif IV catalytic residues and a proposed motif I (AdoMet binding) element []. The MT-A70-like family comprises four subfamilies with varying degrees of interrelatedness. One subfamily is a small group of bacterial DNA: m6A MTases. The other three are paralogous eukaryotic lineages, two of which have not been associated with MTase activity but include proteins that regulate mRNA levels via unknown mechanisms apparently not involving methylation []. Some proteins known to belong to the MT-A70-like family are listed below: Human N6-adenosine-methyltransferase 70 kDa subunit (MT-A70) (2.1.1.62 from EC). Yeast N6-adenosine-methyltransferase IME4 (2.1.1.62 from EC), which is important for induction of sporulation. Yeast karyogamy protein KAR4, a phosphoprotein required for expression of karyogamy-specific genes during mating and that it also acts during mitosis and meiosis. It has been suggested that KAR4 is inactive for methyltransfer and may not even bind AdoMet. ; GO: 0008168 methyltransferase activity, 0006139 nucleobase-containing compound metabolic process
Probab=89.91 E-value=1.5 Score=37.02 Aligned_cols=73 Identities=23% Similarity=0.353 Sum_probs=40.6
Q ss_pred eeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHH-HHHHHHcC
Q psy7093 217 FDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKI-KEWLGICG 295 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~-~~~l~~~~ 295 (322)
||+|+++||+........- ..-..|.... .+.+.++ -+.+++.++|++++=+.+.+.... .+++..=|
T Consensus 1 fdvI~~DPPW~~~~~~~~~-~~~~~Y~tm~--------~~~i~~L--pv~~l~~~~~~lflWvTn~~~~~~~~~l~~~WG 69 (176)
T PF05063_consen 1 FDVIYADPPWPNKSASRKG-GAEAHYPTMS--------LDEIKSL--PVPQLAAPGALLFLWVTNSQLPEAKLELFPAWG 69 (176)
T ss_pred CCEEEEeCCCCCcCccccc-ccccCCCccC--------HHHHHhC--CHHHhCCCCcEEEEEeccchhhHHHHHHHHhCC
Confidence 7999999999765421110 0000111110 1111111 255777888888886666666666 78887755
Q ss_pred CCCceeeEE
Q psy7093 296 HHMKLKLVE 304 (322)
Q Consensus 296 ~~~~~~~v~ 304 (322)
|..++
T Consensus 70 ----f~~~~ 74 (176)
T PF05063_consen 70 ----FEYVT 74 (176)
T ss_pred ----CEEEE
Confidence 55553
No 332
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=89.90 E-value=2.3 Score=39.69 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=31.9
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+||=.|+| .|.+++.+|+.....+|+++|.+++.++.+++
T Consensus 170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 3677777765 56777888888655579999999998887763
No 333
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.79 E-value=1.8 Score=39.11 Aligned_cols=84 Identities=14% Similarity=0.159 Sum_probs=47.7
Q ss_pred CeEEEEcCch-hHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGT-GAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~Gs-G~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+.+|=.|+++ +.++.++++.+ .+++|+.++.+....+.+++-....+ .+ .++..|+.+....+.+.... ..+
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~~g 82 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKDLG 82 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5777777652 45666666543 36789999988543223332223333 22 46788985544332221111 136
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
++|++|.|.-+.
T Consensus 83 ~iDilVnnAG~~ 94 (274)
T PRK08415 83 KIDFIVHSVAFA 94 (274)
T ss_pred CCCEEEECCccC
Confidence 799999998764
No 334
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=89.72 E-value=0.45 Score=42.46 Aligned_cols=53 Identities=17% Similarity=0.264 Sum_probs=36.1
Q ss_pred HHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 124 ~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
.++.++.+.++... ..+++|++||+|.++..+.. +..+|+.-|+++......+
T Consensus 7 ~l~~~I~~~ip~~~--~~~~vepF~G~g~V~~~~~~--~~~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 7 KLAKWIIELIPKNK--HKTYVEPFAGGGSVFLNLKQ--PGKRVIINDINPDLINFWK 59 (260)
T ss_dssp GGHHHHHHHS-S-S---SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHcCCCC--CCEEEEEecchhHHHHHhcc--cccceeeeechHHHHHHHH
Confidence 35667777777521 27999999999999988766 3678999999997765554
No 335
>PRK07062 short chain dehydrogenase; Provisional
Probab=89.71 E-value=1.9 Score=38.36 Aligned_cols=87 Identities=10% Similarity=0.108 Sum_probs=53.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+.+|=.| |+|.++.++++.+ .+.+|+.++.+++.++.+...+....-..++.++..|+.+......+.... ..++
T Consensus 9 k~~lItG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 87 (265)
T PRK07062 9 RVAVVTG-GSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARFGG 87 (265)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 5677666 4555555555543 367899999998877766655543321235778889985544332211100 1257
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|++|.|..+..
T Consensus 88 id~li~~Ag~~~ 99 (265)
T PRK07062 88 VDMLVNNAGQGR 99 (265)
T ss_pred CCEEEECCCCCC
Confidence 899999976543
No 336
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.12 E-value=1.1 Score=39.89 Aligned_cols=82 Identities=10% Similarity=0.152 Sum_probs=49.5
Q ss_pred CeEEEEcCc-hhHHHHHHHHhC--CCCEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--C
Q psy7093 141 TRMIEIGSG-TGAITISLLKHF--PKLKAIAIDQSK--HACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--L 213 (322)
Q Consensus 141 ~~iLDlg~G-sG~~~~~la~~~--~~~~v~~vDis~--~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~ 213 (322)
++++=.|+| ++.++.++++.+ .+.+|+.++.+. +.++.... ..+ .++.++..|+.++...+.+.... .
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~---~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~ 82 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAK---RLP--EPAPVLELDVTNEEHLASLADRVREH 82 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHH---hcC--CCCcEEeCCCCCHHHHHHHHHHHHHH
Confidence 678888875 677777777654 367899888653 33333222 222 24678889985544332221110 1
Q ss_pred CCCeeEEEEcCCCC
Q psy7093 214 EQKFDLVVSNPPYV 227 (322)
Q Consensus 214 ~~~fDlIv~NPPy~ 227 (322)
.+++|++|.|.-+.
T Consensus 83 ~g~iD~li~nAG~~ 96 (256)
T PRK07889 83 VDGLDGVVHSIGFA 96 (256)
T ss_pred cCCCcEEEEccccc
Confidence 36799999998654
No 337
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.86 E-value=1.8 Score=38.80 Aligned_cols=85 Identities=14% Similarity=0.188 Sum_probs=48.0
Q ss_pred CeEEEEcCch-hHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGT-GAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~Gs-G~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+.+|=.|+++ +.++.++++.+ .+.+|+.++.+....+.+++ +.... .++.++..|+.++...+.+.... ..+
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~-~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 83 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEE-FAAQL--GSDIVLPCDVAEDASIDAMFAELGKVWP 83 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHH-HHhcc--CCceEeecCCCCHHHHHHHHHHHHhhcC
Confidence 5677778765 36665555544 36788888876432222222 21111 23567889986654433321110 135
Q ss_pred CeeEEEEcCCCCC
Q psy7093 216 KFDLVVSNPPYVP 228 (322)
Q Consensus 216 ~fDlIv~NPPy~~ 228 (322)
++|++|.|..+.+
T Consensus 84 ~iD~linnAg~~~ 96 (262)
T PRK07984 84 KFDGFVHSIGFAP 96 (262)
T ss_pred CCCEEEECCccCC
Confidence 7899999987643
No 338
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=88.79 E-value=3 Score=36.94 Aligned_cols=87 Identities=8% Similarity=0.184 Sum_probs=49.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++.++++.+ .+.+|+.++.+.. +.+...+...+ .++.++..|+.++.....+.... ..++
T Consensus 9 k~~lItGa-s~gIG~aia~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 83 (251)
T PRK12481 9 KVAIITGC-NTGLGQGMAIGLAKAGADIVGVGVAEA--PETQAQVEALG--RKFHFITADLIQQKDIDSIVSQAVEVMGH 83 (251)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCchH--HHHHHHHHHcC--CeEEEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 67776664 556666665543 3678988887542 22223333333 45888999996654333221100 1357
Q ss_pred eeEEEEcCCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLDI 232 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~ 232 (322)
.|++|.|..+......
T Consensus 84 iD~lv~~ag~~~~~~~ 99 (251)
T PRK12481 84 IDILINNAGIIRRQDL 99 (251)
T ss_pred CCEEEECCCcCCCCCc
Confidence 8999999876544333
No 339
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.73 E-value=4.1 Score=40.45 Aligned_cols=42 Identities=21% Similarity=0.369 Sum_probs=35.7
Q ss_pred CCCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 139 TPTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 139 ~~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
++.+|+=+|+| .|..++..|+.++ +.|+++|.+++.++.++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aes 206 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHH
Confidence 46899999999 5778888888875 589999999999888774
No 340
>PRK07326 short chain dehydrogenase; Provisional
Probab=88.67 E-value=2.2 Score=37.06 Aligned_cols=81 Identities=10% Similarity=0.176 Sum_probs=50.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
.++|=.| |+|.++..+++.+ .+.+|++++.++.........+... .++.++.+|+.+...+....... ..+.
T Consensus 7 ~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (237)
T PRK07326 7 KVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFGG 82 (237)
T ss_pred CEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5677666 5777777777654 3678999999887766554444322 35888999985443322211100 1246
Q ss_pred eeEEEEcCC
Q psy7093 217 FDLVVSNPP 225 (322)
Q Consensus 217 fDlIv~NPP 225 (322)
+|.||.+..
T Consensus 83 ~d~vi~~ag 91 (237)
T PRK07326 83 LDVLIANAG 91 (237)
T ss_pred CCEEEECCC
Confidence 899998754
No 341
>PRK09242 tropinone reductase; Provisional
Probab=88.63 E-value=3.5 Score=36.42 Aligned_cols=86 Identities=8% Similarity=0.112 Sum_probs=52.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.|+ +|.++..+++.+ .+.+|+.++.+++.++....++....-..++.++..|+.++.....+... ...++
T Consensus 10 k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 88 (257)
T PRK09242 10 QTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWDG 88 (257)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 56776665 455555555543 26789999998887776666654432124588889998544322211110 01357
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|.+|.|..+.
T Consensus 89 id~li~~ag~~ 99 (257)
T PRK09242 89 LHILVNNAGGN 99 (257)
T ss_pred CCEEEECCCCC
Confidence 89999988664
No 342
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.33 E-value=2.2 Score=38.44 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=48.6
Q ss_pred CeEEEEcCc-hhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSG-TGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~G-sG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+.+|=.|++ ++.++.++++.+ .+.+|+.+..+....+.+++.....+ ....++.|+.++...+.+.... ..+
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~~~g 87 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG---AFVAGHCDVTDEASIDAVFETLEKKWG 87 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC---CceEEecCCCCHHHHHHHHHHHHHhcC
Confidence 567777775 466777766654 36788887765433333333333332 2456789986554333221111 235
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
+.|++|.|.-+.
T Consensus 88 ~iD~lv~nAG~~ 99 (272)
T PRK08159 88 KLDFVVHAIGFS 99 (272)
T ss_pred CCcEEEECCccc
Confidence 789999998654
No 343
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.25 E-value=2.4 Score=37.85 Aligned_cols=84 Identities=13% Similarity=0.071 Sum_probs=45.8
Q ss_pred CeEEEEcCchh-HHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTG-AITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG-~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+.+|=.|+++| .++.++++.+ .+++|+.++.++...+.+++.....+ ...++..|+.++...+.+.... ..+
T Consensus 9 k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g---~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (260)
T PRK06603 9 KKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG---CNFVSELDVTNPKSISNLFDDIKEKWG 85 (260)
T ss_pred cEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC---CceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56777777653 4555554433 36789888877533333333322222 1235678986554333221110 136
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
+.|++|.|..+.
T Consensus 86 ~iDilVnnag~~ 97 (260)
T PRK06603 86 SFDFLLHGMAFA 97 (260)
T ss_pred CccEEEEccccC
Confidence 799999998654
No 344
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=88.07 E-value=2.5 Score=37.35 Aligned_cols=85 Identities=11% Similarity=0.092 Sum_probs=55.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.++..++.....+...+ .++.++..|+.+......+... ...++
T Consensus 11 k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (255)
T PRK07523 11 RRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVTDHDAVRAAIDAFEAEIGP 87 (255)
T ss_pred CEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 6777666 6777777777654 36799999999887766655555433 3478888998554433222110 01256
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.+|.|.....
T Consensus 88 ~d~li~~ag~~~ 99 (255)
T PRK07523 88 IDILVNNAGMQF 99 (255)
T ss_pred CCEEEECCCCCC
Confidence 899999986654
No 345
>PRK07109 short chain dehydrogenase; Provisional
Probab=87.81 E-value=3.1 Score=38.82 Aligned_cols=85 Identities=9% Similarity=0.094 Sum_probs=54.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++||=.| |+|.++..+++.+ .+.+|+.++.+++.++...+.+...+ .++.++.+|+.+....+.+.... ..++
T Consensus 9 k~vlITG-as~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~ 85 (334)
T PRK07109 9 QVVVITG-ASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELGP 85 (334)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence 4566555 5566666665543 36799999999988877766666544 35888999996544333221100 1257
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|++|.|.....
T Consensus 86 iD~lInnAg~~~ 97 (334)
T PRK07109 86 IDTWVNNAMVTV 97 (334)
T ss_pred CCEEEECCCcCC
Confidence 899999976543
No 346
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.70 E-value=1.6 Score=35.60 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=33.9
Q ss_pred EEcCchh--HHHHHHH--HhCCCCEEEEEeCCHHHHHHHHHH--HHHcCCCCcEEEEEccC
Q psy7093 145 EIGSGTG--AITISLL--KHFPKLKAIAIDQSKHACDLTEQN--AVMHNVANQLQVFHAEI 199 (322)
Q Consensus 145 Dlg~GsG--~~~~~la--~~~~~~~v~~vDis~~al~~A~~n--~~~~~l~~~i~~~~~D~ 199 (322)
|+|+..| .....++ ...+..+|+++|.++..++..+.| +..++..+.++++...+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 61 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYAV 61 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-S
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEeec
Confidence 8999999 5555443 345778999999999999999999 66554433456555443
No 347
>KOG2782|consensus
Probab=87.57 E-value=0.68 Score=40.41 Aligned_cols=68 Identities=24% Similarity=0.337 Sum_probs=57.7
Q ss_pred CCcccCchhHHHHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 114 PVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 114 ~~~iprp~te~lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
+.-.|.|....+++.+++.+.+.. ....+|..-|+|.-+.++....+..++++.|.+|.|-++|+...
T Consensus 20 ~d~~~~~HVPVm~devl~~lspv~--g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s 87 (303)
T KOG2782|consen 20 GDEVPSSHVPVMLDEVLDILSPVR--GRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHS 87 (303)
T ss_pred cccccccCCceehhhHHHHcCCCC--CceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhh
Confidence 344566666778899999888764 37899999999999999999999999999999999999888765
No 348
>PRK06194 hypothetical protein; Provisional
Probab=87.54 E-value=2.8 Score=37.77 Aligned_cols=86 Identities=12% Similarity=0.110 Sum_probs=53.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++| +-.|+|.++..+++.+ .+.+|+.+|.+...++.....+...+ .++.++.+|+.+....+.+.... ..++
T Consensus 7 k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 83 (287)
T PRK06194 7 KVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSDAAQVEALADAALERFGA 83 (287)
T ss_pred CEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5676 5556677777776644 36789999998877665544443333 34888999995543332211100 1246
Q ss_pred eeEEEEcCCCCCC
Q psy7093 217 FDLVVSNPPYVPS 229 (322)
Q Consensus 217 fDlIv~NPPy~~~ 229 (322)
.|+|+.|......
T Consensus 84 id~vi~~Ag~~~~ 96 (287)
T PRK06194 84 VHLLFNNAGVGAG 96 (287)
T ss_pred CCEEEECCCCCCC
Confidence 8999999876543
No 349
>PRK09072 short chain dehydrogenase; Provisional
Probab=87.45 E-value=3.4 Score=36.71 Aligned_cols=84 Identities=10% Similarity=0.156 Sum_probs=50.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc-CCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL-LEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~-~~~~f 217 (322)
.++|=.| |+|.++..+++.+ .+.+|++++.+++.++.....+ ....++.++..|+.+......+.... ..+..
T Consensus 6 ~~vlItG-~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 81 (263)
T PRK09072 6 KRVLLTG-ASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL---PYPGRHRWVVADLTSEAGREAVLARAREMGGI 81 (263)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH---hcCCceEEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 4566555 4455555555433 3679999999987766554433 12346889999985543322211100 12568
Q ss_pred eEEEEcCCCCC
Q psy7093 218 DLVVSNPPYVP 228 (322)
Q Consensus 218 DlIv~NPPy~~ 228 (322)
|.+|.|..+..
T Consensus 82 d~lv~~ag~~~ 92 (263)
T PRK09072 82 NVLINNAGVNH 92 (263)
T ss_pred CEEEECCCCCC
Confidence 99999976654
No 350
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=87.44 E-value=2.8 Score=36.06 Aligned_cols=31 Identities=26% Similarity=0.232 Sum_probs=24.1
Q ss_pred CCeEEEEcCchhHHHHHHHHhC-CCCEEEEEe
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF-PKLKAIAID 170 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~-~~~~v~~vD 170 (322)
+.+|+|+-.|+|.++.-++... |...|+++=
T Consensus 49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~ 80 (238)
T COG4798 49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYV 80 (238)
T ss_pred CCEEEEEecCCccHhhhhchhcCCceeEEEec
Confidence 3789999999999999888765 334666654
No 351
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=87.42 E-value=2.5 Score=38.80 Aligned_cols=40 Identities=23% Similarity=0.372 Sum_probs=31.3
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+.+||..|+| .|..++.+|+.. +.+|++++.++...+.++
T Consensus 166 ~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~ 206 (338)
T cd08254 166 GETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAK 206 (338)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHH
Confidence 3678888876 488888888886 577999999988776664
No 352
>PRK12939 short chain dehydrogenase; Provisional
Probab=87.18 E-value=2.5 Score=36.93 Aligned_cols=84 Identities=8% Similarity=0.066 Sum_probs=52.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++| +-.|+|.++..+++.+ .+.+|++++.+++.+......++..+ .++.++..|+.+......+.... ..++
T Consensus 8 ~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (250)
T PRK12939 8 KRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAALGG 84 (250)
T ss_pred CEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5676 4456788888877654 35789999988877665555444333 35889999995543222211100 1157
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|.||.|.-..
T Consensus 85 id~vi~~ag~~ 95 (250)
T PRK12939 85 LDGLVNNAGIT 95 (250)
T ss_pred CCEEEECCCCC
Confidence 89999986543
No 353
>PRK05872 short chain dehydrogenase; Provisional
Probab=86.56 E-value=5 Score=36.57 Aligned_cols=88 Identities=11% Similarity=0.131 Sum_probs=51.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.+++.++...+.+ +...++..+..|+.+......+.... ..++
T Consensus 10 k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l---~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 85 (296)
T PRK05872 10 KVVVVTG-AARGIGAELARRLHARGAKLALVDLEEAELAALAAEL---GGDDRVLTVVADVTDLAAMQAAAEEAVERFGG 85 (296)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cCCCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 5677555 5566666666544 3679999999988766544333 21234666678985543322211100 1257
Q ss_pred eeEEEEcCCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLDI 232 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~ 232 (322)
.|++|.|.-......+
T Consensus 86 id~vI~nAG~~~~~~~ 101 (296)
T PRK05872 86 IDVVVANAGIASGGSV 101 (296)
T ss_pred CCEEEECCCcCCCcCc
Confidence 8999999876543333
No 354
>PRK06101 short chain dehydrogenase; Provisional
Probab=86.04 E-value=3.1 Score=36.45 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=46.1
Q ss_pred eEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 142 RMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
++| +..|+|.++..+++.+ .+.+|+.++.+++.++.... .+ .++.++.+|+.+......+..... ...|.
T Consensus 3 ~vl-ItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~----~~--~~~~~~~~D~~~~~~~~~~~~~~~-~~~d~ 74 (240)
T PRK06101 3 AVL-ITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHT----QS--ANIFTLAFDVTDHPGTKAALSQLP-FIPEL 74 (240)
T ss_pred EEE-EEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----hc--CCCeEEEeeCCCHHHHHHHHHhcc-cCCCE
Confidence 455 3445677777777654 36789999998876543322 11 247888999965443332211111 23578
Q ss_pred EEEcCCCC
Q psy7093 220 VVSNPPYV 227 (322)
Q Consensus 220 Iv~NPPy~ 227 (322)
++.|....
T Consensus 75 ~i~~ag~~ 82 (240)
T PRK06101 75 WIFNAGDC 82 (240)
T ss_pred EEEcCccc
Confidence 88887643
No 355
>PRK06139 short chain dehydrogenase; Provisional
Probab=86.03 E-value=3.2 Score=38.75 Aligned_cols=91 Identities=13% Similarity=0.172 Sum_probs=56.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |||.++.++++.+ .+.+|+.++.+++.++...+.++..+ .++.++..|+.+......+.... ..++
T Consensus 8 k~vlITG-As~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 84 (330)
T PRK06139 8 AVVVITG-ASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFGGR 84 (330)
T ss_pred CEEEEcC-CCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 5566555 4566666665543 36799999999998887777766554 34778889985544332221100 1257
Q ss_pred eeEEEEcCCCCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLDIPK 234 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~ 234 (322)
+|++|.|..+.....+..
T Consensus 85 iD~lVnnAG~~~~~~~~~ 102 (330)
T PRK06139 85 IDVWVNNVGVGAVGRFEE 102 (330)
T ss_pred CCEEEECCCcCCCCCccc
Confidence 899999986544433333
No 356
>PRK08324 short chain dehydrogenase; Validated
Probab=86.00 E-value=2.5 Score=43.65 Aligned_cols=87 Identities=16% Similarity=0.129 Sum_probs=52.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+++|.++..++.+...+... .++.++..|+.++......... ...+.
T Consensus 423 k~vLVTG-asggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~ 498 (681)
T PRK08324 423 KVALVTG-AAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFGG 498 (681)
T ss_pred CEEEEec-CCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4566554 4566666666543 3579999999988776655443221 3588899998554432221100 01247
Q ss_pred eeEEEEcCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLD 231 (322)
Q Consensus 217 fDlIv~NPPy~~~~~ 231 (322)
+|+||.|..+.....
T Consensus 499 iDvvI~~AG~~~~~~ 513 (681)
T PRK08324 499 VDIVVSNAGIAISGP 513 (681)
T ss_pred CCEEEECCCCCCCCC
Confidence 899999987654443
No 357
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=85.98 E-value=5.6 Score=37.33 Aligned_cols=21 Identities=19% Similarity=0.542 Sum_probs=15.3
Q ss_pred CCeEEEEcCchhHHHHHHHHh
Q psy7093 140 PTRMIEIGSGTGAITISLLKH 160 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~ 160 (322)
+.+|+|+||.+|.-++.+...
T Consensus 17 ~~~iaD~GcS~G~Nsl~~~~~ 37 (334)
T PF03492_consen 17 PFRIADLGCSSGPNSLLAVSN 37 (334)
T ss_dssp EEEEEEES--SSHHHHHHHHH
T ss_pred ceEEEecCCCCCccHHHHHHH
Confidence 468999999999888777653
No 358
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=85.92 E-value=2.1 Score=38.21 Aligned_cols=85 Identities=8% Similarity=0.108 Sum_probs=47.0
Q ss_pred CeEEEEcCc-hhHHHHHHHHhC--CCCEEEEEeCCHH--HHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--C
Q psy7093 141 TRMIEIGSG-TGAITISLLKHF--PKLKAIAIDQSKH--ACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--L 213 (322)
Q Consensus 141 ~~iLDlg~G-sG~~~~~la~~~--~~~~v~~vDis~~--al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~ 213 (322)
+++|=.|++ ++.++.++++.+ .+.+|+.+..+.+ ..+.....+...+ .++.++..|+.++.....+.... .
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~ 84 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPL--NPSLFLPCDVQDDAQIEETFETIKQK 84 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhcc--CcceEeecCcCCHHHHHHHHHHHHHH
Confidence 678888874 577777777654 3678877754322 1111111121111 23567889985544332221111 1
Q ss_pred CCCeeEEEEcCCCC
Q psy7093 214 EQKFDLVVSNPPYV 227 (322)
Q Consensus 214 ~~~fDlIv~NPPy~ 227 (322)
.++.|++|.|..+.
T Consensus 85 ~g~iD~lv~nag~~ 98 (258)
T PRK07370 85 WGKLDILVHCLAFA 98 (258)
T ss_pred cCCCCEEEEccccc
Confidence 35799999998764
No 359
>PRK06500 short chain dehydrogenase; Provisional
Probab=85.86 E-value=3 Score=36.51 Aligned_cols=82 Identities=15% Similarity=0.178 Sum_probs=47.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=. .|+|.++..+++.+ .+.+|++++.++..+....+. .+ .++.+++.|+.+......+.... ..++
T Consensus 7 k~vlIt-Gasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~---~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (249)
T PRK06500 7 KTALIT-GGTSGIGLETARQFLAEGARVAITGRDPASLEAARAE---LG--ESALVIRADAGDVAAQKALAQALAEAFGR 80 (249)
T ss_pred CEEEEe-CCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH---hC--CceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 445444 45666766666543 357899999987655443322 22 34778888874322211111000 1257
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
+|.+|.|..+..
T Consensus 81 id~vi~~ag~~~ 92 (249)
T PRK06500 81 LDAVFINAGVAK 92 (249)
T ss_pred CCEEEECCCCCC
Confidence 899999987654
No 360
>PRK08265 short chain dehydrogenase; Provisional
Probab=85.63 E-value=5.5 Score=35.41 Aligned_cols=81 Identities=10% Similarity=0.138 Sum_probs=48.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.++..++.... ..+ .++.++.+|+.++.....+.... ..++
T Consensus 7 k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~---~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 80 (261)
T PRK08265 7 KVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVAA---SLG--ERARFIATDITDDAAIERAVATVVARFGR 80 (261)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH---HhC--CeeEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 5666655 5556666666543 36799999998765443332 222 35888999995544332211100 1256
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|..+.
T Consensus 81 id~lv~~ag~~ 91 (261)
T PRK08265 81 VDILVNLACTY 91 (261)
T ss_pred CCEEEECCCCC
Confidence 89999998654
No 361
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=85.62 E-value=2 Score=34.24 Aligned_cols=64 Identities=22% Similarity=0.372 Sum_probs=33.0
Q ss_pred CeEEEEcCchhH-HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 141 TRMIEIGSGTGA-ITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 141 ~~iLDlg~GsG~-~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
.+|+++|-|.=. .+..|+.. +..|+++|+.+. ++. .| +.++..|+ +++-.. .-...|+
T Consensus 15 ~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~-------~a~-~g----~~~v~DDi-----f~P~l~--iY~~a~l 73 (127)
T PF03686_consen 15 GKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR-------KAP-EG----VNFVVDDI-----FNPNLE--IYEGADL 73 (127)
T ss_dssp SEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S------------S----TTEE---S-----SS--HH--HHTTEEE
T ss_pred CcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc-------ccc-cC----cceeeecc-----cCCCHH--HhcCCcE
Confidence 699999998664 44445554 589999999986 222 23 67889999 443111 1236899
Q ss_pred EEE-cCC
Q psy7093 220 VVS-NPP 225 (322)
Q Consensus 220 Iv~-NPP 225 (322)
|.| +||
T Consensus 74 IYSiRPP 80 (127)
T PF03686_consen 74 IYSIRPP 80 (127)
T ss_dssp EEEES--
T ss_pred EEEeCCC
Confidence 998 776
No 362
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.62 E-value=4.7 Score=36.29 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=47.2
Q ss_pred CeEEEEcCch-hHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGT-GAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~Gs-G~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+.+|=.|+++ +.++.++++.+ .+++|+.++.+....+..++-....+ ...++..|+.+....+.+.... ..+
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g---~~~~~~~Dv~d~~~v~~~~~~~~~~~g 84 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG---SDFVLPCDVEDIASVDAVFEALEKKWG 84 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC---CceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence 6788888765 24555555443 36889988877543333333222223 1346788986544333221111 136
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
+.|++|.|.-..
T Consensus 85 ~iD~lVnnAG~~ 96 (271)
T PRK06505 85 KLDFVVHAIGFS 96 (271)
T ss_pred CCCEEEECCccC
Confidence 799999997653
No 363
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=85.54 E-value=3.3 Score=36.61 Aligned_cols=84 Identities=8% Similarity=0.161 Sum_probs=54.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.+...++.....+...+ .++.++.+|+.++...+.+-... ..++
T Consensus 13 k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~ 89 (259)
T PRK08213 13 KTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVADEADIERLAEETLERFGH 89 (259)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 5677666 6777888777654 35789999999887766665554433 35788999995544332111000 1246
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|.||.|....
T Consensus 90 id~vi~~ag~~ 100 (259)
T PRK08213 90 VDILVNNAGAT 100 (259)
T ss_pred CCEEEECCCCC
Confidence 89999997654
No 364
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=85.45 E-value=4 Score=36.01 Aligned_cols=85 Identities=7% Similarity=0.107 Sum_probs=54.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++++=.| |+|.++..+++.+ .+.+|+.++.+++.+......++..+ .++.++.+|+.++.....+.... ..++
T Consensus 12 k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 88 (256)
T PRK06124 12 QVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAEHGR 88 (256)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 6777666 5666666666544 36899999999877766655555443 35888999985544322211100 1257
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.+|.|..+..
T Consensus 89 id~vi~~ag~~~ 100 (256)
T PRK06124 89 LDILVNNVGARD 100 (256)
T ss_pred CCEEEECCCCCC
Confidence 899999987644
No 365
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=85.36 E-value=3.7 Score=35.81 Aligned_cols=86 Identities=12% Similarity=0.153 Sum_probs=52.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
++||=.| |+|.++..+++.+ .+.+|++++.++..+..+...+...+ .++.++.+|+.+......+... ...++
T Consensus 7 ~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (251)
T PRK12826 7 RVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG--GKARARQVDVRDRAALKAAVAAGVEDFGR 83 (251)
T ss_pred CEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 5677544 5677777766543 25789999999776665555554433 3488899998543322211100 01246
Q ss_pred eeEEEEcCCCCCC
Q psy7093 217 FDLVVSNPPYVPS 229 (322)
Q Consensus 217 fDlIv~NPPy~~~ 229 (322)
+|.||.|+.....
T Consensus 84 ~d~vi~~ag~~~~ 96 (251)
T PRK12826 84 LDILVANAGIFPL 96 (251)
T ss_pred CCEEEECCCCCCC
Confidence 8999999866543
No 366
>PRK08251 short chain dehydrogenase; Provisional
Probab=85.28 E-value=5.3 Score=34.97 Aligned_cols=87 Identities=9% Similarity=0.132 Sum_probs=54.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.++..++.....+....-..++.++.+|+.++.....+.... ..+.
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG 81 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4566555 6777777777654 246899999998877666555443322335888999995543322211100 1246
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.+|.|.-+..
T Consensus 82 id~vi~~ag~~~ 93 (248)
T PRK08251 82 LDRVIVNAGIGK 93 (248)
T ss_pred CCEEEECCCcCC
Confidence 899999876543
No 367
>KOG2920|consensus
Probab=85.26 E-value=0.96 Score=41.03 Aligned_cols=57 Identities=12% Similarity=0.198 Sum_probs=40.5
Q ss_pred CchhHHHHHHHHHHh-ccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHH
Q psy7093 119 RSETEELIDIITDKL-ESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHAC 176 (322)
Q Consensus 119 rp~te~lv~~i~~~~-~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al 176 (322)
.--+..++..+.+.+ .......++|||+|||+|..++.+... ....+...|.+.+.+
T Consensus 95 wecS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~-~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 95 WECSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVK-GAVSVHFQDFNAEVL 152 (282)
T ss_pred eecHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhh-ccceeeeEecchhhe
Confidence 334555666666444 111123489999999999999988877 347899999998887
No 368
>PRK06914 short chain dehydrogenase; Provisional
Probab=85.25 E-value=5.4 Score=35.73 Aligned_cols=87 Identities=16% Similarity=0.184 Sum_probs=53.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC-cCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD-LLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~-~~~~~f 217 (322)
+++|=.| |+|.++..+++.+ .+.+|++++.+++.++.........+...++.++.+|+.++...+.+... ...++.
T Consensus 4 k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 82 (280)
T PRK06914 4 KIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI 82 (280)
T ss_pred CEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence 4556555 5556666665432 36789999998877766555444444445689999999654433221100 012578
Q ss_pred eEEEEcCCCCC
Q psy7093 218 DLVVSNPPYVP 228 (322)
Q Consensus 218 DlIv~NPPy~~ 228 (322)
|.||.|+.+..
T Consensus 83 d~vv~~ag~~~ 93 (280)
T PRK06914 83 DLLVNNAGYAN 93 (280)
T ss_pred eEEEECCcccc
Confidence 99999976544
No 369
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=85.16 E-value=3.2 Score=37.77 Aligned_cols=105 Identities=22% Similarity=0.291 Sum_probs=61.1
Q ss_pred EEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccC---CCChhHH-HHHHHHHHhc
Q psy7093 192 LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDG---GHDGLNI-IKPICVFGSN 267 (322)
Q Consensus 192 i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~---g~~gl~~-~~~~l~~~~~ 267 (322)
.+++++|. ++.+.. ++...+|+|+.+|||........+...-.... +.++ ...=..+ ....+....+
T Consensus 17 ~~i~~~d~-----~~~l~~-~~~~svDli~tdppy~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r 87 (302)
T COG0863 17 SKIYKGDC-----LEILKS-LPENSVDLIFTDPPYNNVKAGRKLGFLKRWLD---AWDGWDSRGIYLKFILLQWLAEQKR 87 (302)
T ss_pred hheecchH-----HHHHhh-ccccceeEEEcCCCccccccccccccccccch---hhhhhhhHHHHHHHHHHHHHHHhhh
Confidence 46677877 444432 34558999999999987654211110000000 0000 0001122 3566778899
Q ss_pred cCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEec
Q psy7093 268 YLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYK 307 (322)
Q Consensus 268 ~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~ 307 (322)
.|+++|.+++-.+......+...+++.|+ .+....+|.
T Consensus 88 vl~~~~~~~v~~~~~~~~~~~~~~~~~gf--~~~~~iiw~ 125 (302)
T COG0863 88 VLKPGGSLYVIDPFSNLARIEDIAKKLGF--EILGKIIWK 125 (302)
T ss_pred eecCCCEEEEECCchhhhHHHHHHHhCCC--eEeeeEEEe
Confidence 99999999998887666777777777664 344444443
No 370
>PRK07102 short chain dehydrogenase; Provisional
Probab=85.10 E-value=5.3 Score=34.94 Aligned_cols=85 Identities=11% Similarity=0.112 Sum_probs=51.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
++++=.| |+|.++..+++.+ .+.+|++++.++...+...+++...+ ..++.++.+|+.++.....+-.. ...++|
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~-~~~~~d 78 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-AVAVSTHELDILDTASHAAFLDS-LPALPD 78 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHH-HhhcCC
Confidence 4566555 5677777666654 25789999999877665544443322 23689999999543332221111 113579
Q ss_pred EEEEcCCCCC
Q psy7093 219 LVVSNPPYVP 228 (322)
Q Consensus 219 lIv~NPPy~~ 228 (322)
.++.|..+..
T Consensus 79 ~vv~~ag~~~ 88 (243)
T PRK07102 79 IVLIAVGTLG 88 (243)
T ss_pred EEEECCcCCC
Confidence 9999876543
No 371
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=85.07 E-value=1.9 Score=35.14 Aligned_cols=90 Identities=11% Similarity=0.191 Sum_probs=54.2
Q ss_pred EEEEcCchhHHHHHHHHhC---CCCEEEEEeCC--HHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 143 MIEIGSGTGAITISLLKHF---PKLKAIAIDQS--KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 143 iLDlg~GsG~~~~~la~~~---~~~~v~~vDis--~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+|=.|+ +|.++..+++.+ ....|+.+..+ .+........+...+ .++.+.+.|+.+....+.+-... ..+
T Consensus 3 ~lItGa-~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (167)
T PF00106_consen 3 VLITGA-SSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG--AKITFIECDLSDPESIRALIEEVIKRFG 79 (167)
T ss_dssp EEEETT-TSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT--SEEEEEESETTSHHHHHHHHHHHHHHHS
T ss_pred EEEECC-CCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence 444444 455555555543 45688899988 555555555555445 46999999985544332221111 246
Q ss_pred CeeEEEEcCCCCCCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSLDIPKL 235 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l 235 (322)
+.|++|.|...........+
T Consensus 80 ~ld~li~~ag~~~~~~~~~~ 99 (167)
T PF00106_consen 80 PLDILINNAGIFSDGSLDDL 99 (167)
T ss_dssp SESEEEEECSCTTSBSGGGS
T ss_pred cccccccccccccccccccc
Confidence 89999999887765544444
No 372
>PRK05876 short chain dehydrogenase; Provisional
Probab=85.02 E-value=5.4 Score=35.95 Aligned_cols=88 Identities=15% Similarity=0.147 Sum_probs=53.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.|+ +|.++.++++.+ .+.+|+.++.++..++.+...+...+ .++.++..|+.+......+... ...++
T Consensus 7 k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 83 (275)
T PRK05876 7 RGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVRHREEVTHLADEAFRLLGH 83 (275)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 56665554 566666666543 36789999999877766555444333 2478889998554433221110 01256
Q ss_pred eeEEEEcCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLD 231 (322)
Q Consensus 217 fDlIv~NPPy~~~~~ 231 (322)
.|++|.|..+.....
T Consensus 84 id~li~nAg~~~~~~ 98 (275)
T PRK05876 84 VDVVFSNAGIVVGGP 98 (275)
T ss_pred CCEEEECCCcCCCCC
Confidence 899999987654333
No 373
>KOG2360|consensus
Probab=84.50 E-value=2.8 Score=39.65 Aligned_cols=85 Identities=12% Similarity=0.132 Sum_probs=64.4
Q ss_pred CCCeEEEEcCchhHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 139 TPTRMIEIGSGTGAITISLLKHFP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 139 ~~~~iLDlg~GsG~~~~~la~~~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++.+|+|.||--|.-+.++|.-.+ ..+++|.|.+.+..+..+.-++..|... ++...+|+ ... +....-...
T Consensus 213 ~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df-----~~t-~~~~~~~~v 285 (413)
T KOG2360|consen 213 PGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDF-----LNT-ATPEKFRDV 285 (413)
T ss_pred CCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccc-----cCC-CCcccccce
Confidence 447999999999999999988765 6799999999999999888888888664 66678887 332 211122346
Q ss_pred eEEEEcCCCCCCC
Q psy7093 218 DLVVSNPPYVPSL 230 (322)
Q Consensus 218 DlIv~NPPy~~~~ 230 (322)
..|+++|+..-+.
T Consensus 286 ~~iL~DpscSgSg 298 (413)
T KOG2360|consen 286 TYILVDPSCSGSG 298 (413)
T ss_pred eEEEeCCCCCCCc
Confidence 6899999876544
No 374
>PRK12744 short chain dehydrogenase; Provisional
Probab=84.48 E-value=8.5 Score=33.96 Aligned_cols=84 Identities=18% Similarity=0.215 Sum_probs=46.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCC----HHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--c
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQS----KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--L 212 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis----~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~ 212 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.+ .+..+...+.+...+ .++.++..|+.++.....+... .
T Consensus 9 k~vlItG-a~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~ 85 (257)
T PRK12744 9 KVVLIAG-GAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAG--AKAVAFQADLTTAAAVEKLFDDAKA 85 (257)
T ss_pred cEEEEEC-CCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhC--CcEEEEecCcCCHHHHHHHHHHHHH
Confidence 5677666 5666777777654 25676666532 223333322233222 3588899999554433221110 0
Q ss_pred CCCCeeEEEEcCCCC
Q psy7093 213 LEQKFDLVVSNPPYV 227 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~ 227 (322)
..++.|++|.|.-..
T Consensus 86 ~~~~id~li~~ag~~ 100 (257)
T PRK12744 86 AFGRPDIAINTVGKV 100 (257)
T ss_pred hhCCCCEEEECCccc
Confidence 125789999987643
No 375
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=84.23 E-value=9.3 Score=35.61 Aligned_cols=42 Identities=29% Similarity=0.384 Sum_probs=30.5
Q ss_pred CCeEEEEcCc-hhHHHHHHHHh-CCCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKH-FPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~-~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+||=+|+| .|.+++.+++. .+..+|+++|.++.-++.|+.
T Consensus 164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 4688888875 34455566665 456789999999988888763
No 376
>PRK07454 short chain dehydrogenase; Provisional
Probab=84.12 E-value=4.3 Score=35.44 Aligned_cols=85 Identities=11% Similarity=0.106 Sum_probs=52.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|++++.++.........++.. ..++.++.+|+.+........... ..++
T Consensus 7 k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (241)
T PRK07454 7 PRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRST--GVKAAAYSIDLSNPEAIAPGIAELLEQFGC 83 (241)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhC--CCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5677666 5677777777654 3579999999987665554444332 245888999995543222111000 1246
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.+|.|.-+..
T Consensus 84 id~lv~~ag~~~ 95 (241)
T PRK07454 84 PDVLINNAGMAY 95 (241)
T ss_pred CCEEEECCCccC
Confidence 899999886543
No 377
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=84.08 E-value=3.9 Score=38.34 Aligned_cols=41 Identities=22% Similarity=0.235 Sum_probs=30.7
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+.+||=.|+| .|..++.+|+..+..+|+++|.++...+.++
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~ 218 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAR 218 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 3678777765 4667777888864446999999998887775
No 378
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=84.06 E-value=3.9 Score=38.58 Aligned_cols=41 Identities=15% Similarity=0.194 Sum_probs=30.0
Q ss_pred CeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 141 TRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 141 ~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
.+||=.|+| .|.+++.+|+.....+|+++|.++..++.+++
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 566667765 46677777887644479999999988887753
No 379
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=83.82 E-value=5.5 Score=34.92 Aligned_cols=40 Identities=23% Similarity=0.399 Sum_probs=31.8
Q ss_pred CCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 140 PTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+.+||-.|+|+ |...+.+++.. +.+|++++.++...+.++
T Consensus 135 ~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 135 GDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHH
Confidence 47899999985 77777788775 489999999987766664
No 380
>PRK08177 short chain dehydrogenase; Provisional
Probab=83.65 E-value=4 Score=35.31 Aligned_cols=78 Identities=14% Similarity=0.237 Sum_probs=46.0
Q ss_pred eEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 142 RMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+++=.| |+|.++..+++.+ .+.+|++++.++......+ .. .++.+...|+.+......+...+..+++|.
T Consensus 3 ~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~----~~---~~~~~~~~D~~d~~~~~~~~~~~~~~~id~ 74 (225)
T PRK08177 3 TALIIG-ASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQ----AL---PGVHIEKLDMNDPASLDQLLQRLQGQRFDL 74 (225)
T ss_pred EEEEeC-CCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHH----hc---cccceEEcCCCCHHHHHHHHHHhhcCCCCE
Confidence 455444 4666666666544 2579999998876543322 11 136777889855433322222223357999
Q ss_pred EEEcCCCC
Q psy7093 220 VVSNPPYV 227 (322)
Q Consensus 220 Iv~NPPy~ 227 (322)
|+.|....
T Consensus 75 vi~~ag~~ 82 (225)
T PRK08177 75 LFVNAGIS 82 (225)
T ss_pred EEEcCccc
Confidence 99998654
No 381
>PRK07985 oxidoreductase; Provisional
Probab=83.55 E-value=2.4 Score=38.70 Aligned_cols=83 Identities=6% Similarity=0.033 Sum_probs=46.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCH--HHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSK--HACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLE 214 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~--~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~ 214 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.+. ...+.........+ .++.++..|+.+......+-.. -..
T Consensus 50 k~vlITG-as~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 126 (294)
T PRK07985 50 RKALVTG-GDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHKAL 126 (294)
T ss_pred CEEEEEC-CCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5777777 4566666666543 367888876542 33333333333333 3477888998554322221100 013
Q ss_pred CCeeEEEEcCCC
Q psy7093 215 QKFDLVVSNPPY 226 (322)
Q Consensus 215 ~~fDlIv~NPPy 226 (322)
++.|.+|.|..+
T Consensus 127 g~id~lv~~Ag~ 138 (294)
T PRK07985 127 GGLDIMALVAGK 138 (294)
T ss_pred CCCCEEEECCCC
Confidence 578999998764
No 382
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=83.51 E-value=8.1 Score=34.07 Aligned_cols=82 Identities=7% Similarity=0.137 Sum_probs=50.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.+...++...... ..++.++..|+.++.....+.... ..++
T Consensus 7 ~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (257)
T PRK07067 7 KVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVSLDVTRQDSIDRIVAAAVERFGG 80 (257)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4566555 6677777777654 3679999999887665443322 234888899985544332211100 1246
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.+|.|.....
T Consensus 81 id~li~~ag~~~ 92 (257)
T PRK07067 81 IDILFNNAALFD 92 (257)
T ss_pred CCEEEECCCcCC
Confidence 899999876543
No 383
>PRK08589 short chain dehydrogenase; Validated
Probab=83.43 E-value=7.5 Score=34.82 Aligned_cols=83 Identities=16% Similarity=0.228 Sum_probs=48.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++.++++.+ .+.+|+.++.+ ..++.....+...+ .++.++..|+.++.....+.... ..++
T Consensus 7 k~vlItGa-s~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~ 82 (272)
T PRK08589 7 KVAVITGA-STGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG--GKAKAYHVDISDEQQVKDFASEIKEQFGR 82 (272)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence 45665554 455566655543 36899999998 44444444444333 35888899985543322211100 1257
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|..+.
T Consensus 83 id~li~~Ag~~ 93 (272)
T PRK08589 83 VDVLFNNAGVD 93 (272)
T ss_pred cCEEEECCCCC
Confidence 89999998764
No 384
>KOG1205|consensus
Probab=83.27 E-value=9.7 Score=34.82 Aligned_cols=94 Identities=13% Similarity=0.158 Sum_probs=59.4
Q ss_pred CeEEEEcCchh---HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc--CcCCC
Q psy7093 141 TRMIEIGSGTG---AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP--DLLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG---~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~--~~~~~ 215 (322)
+.|+==||-|| .++..+++. +++++-+-.....++...+-++..+-.+++.++++|+.+..+.....+ ...-+
T Consensus 13 kvVvITGASsGIG~~lA~~la~~--G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~fg 90 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKR--GAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRHFG 90 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhC--CCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHhcC
Confidence 56776677666 344444444 678888888888888886666655433369999999955432221100 01357
Q ss_pred CeeEEEEcCCCCCCCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLE 236 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~ 236 (322)
..|+.|.|--+..........
T Consensus 91 ~vDvLVNNAG~~~~~~~~~~~ 111 (282)
T KOG1205|consen 91 RVDVLVNNAGISLVGFLEDTD 111 (282)
T ss_pred CCCEEEecCccccccccccCc
Confidence 899999998877644333333
No 385
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.23 E-value=6.7 Score=34.12 Aligned_cols=85 Identities=8% Similarity=0.100 Sum_probs=53.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
.+++=.| |+|.++..+++.+ .+.+|++++.++...+.....+...+ .++.++..|+.+.......-... ..+.
T Consensus 8 ~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (239)
T PRK07666 8 KNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYG--VKVVIATADVSDYEEVTAAIEQLKNELGS 84 (239)
T ss_pred CEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5677666 5788888777654 36799999998877665544444332 45888999985443222111000 1246
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.||.|.....
T Consensus 85 id~vi~~ag~~~ 96 (239)
T PRK07666 85 IDILINNAGISK 96 (239)
T ss_pred ccEEEEcCcccc
Confidence 899999876543
No 386
>PRK06701 short chain dehydrogenase; Provisional
Probab=83.17 E-value=6.3 Score=35.85 Aligned_cols=84 Identities=12% Similarity=0.175 Sum_probs=47.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHH-HHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKH-ACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~-al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.|+ +|.++..++..+ .+.+|+.++.++. .++.....+...+ .++.++.+|+.+....+.+.... ..+
T Consensus 47 k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~~ 123 (290)
T PRK06701 47 KVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVRELG 123 (290)
T ss_pred CEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56777664 555566655543 2678988887642 2333333333323 35888999985543322211100 124
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
+.|.||.|..+.
T Consensus 124 ~iD~lI~~Ag~~ 135 (290)
T PRK06701 124 RLDILVNNAAFQ 135 (290)
T ss_pred CCCEEEECCccc
Confidence 689999987653
No 387
>KOG0821|consensus
Probab=83.09 E-value=6.7 Score=34.46 Aligned_cols=70 Identities=21% Similarity=0.335 Sum_probs=47.9
Q ss_pred HHHHHHHHhccCCCCCCeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccC
Q psy7093 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199 (322)
Q Consensus 125 lv~~i~~~~~~~~~~~~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~ 199 (322)
+.+.+.+...... +.-|.++|.|.|.++.++... ..++...||+++..+.-.+.-... .+.+..++++|+
T Consensus 38 lT~KIvK~A~~~~--~~~v~eIgPgpggitR~il~a-~~~RL~vVE~D~RFip~LQ~L~EA--a~~~~~IHh~D~ 107 (326)
T KOG0821|consen 38 LTDKIVKKAGNLT--NAYVYEIGPGPGGITRSILNA-DVARLLVVEKDTRFIPGLQMLSEA--APGKLRIHHGDV 107 (326)
T ss_pred HHHHHHHhccccc--cceeEEecCCCCchhHHHHhc-chhheeeeeeccccChHHHHHhhc--CCcceEEecccc
Confidence 3344554444322 267999999999999999876 456788899888776555543332 234688888887
No 388
>PRK08267 short chain dehydrogenase; Provisional
Probab=82.98 E-value=5.3 Score=35.31 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=51.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc---CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL---LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~---~~~ 215 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.+++.++....... ..++.++++|+.+........... ..+
T Consensus 2 k~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~ 76 (260)
T PRK08267 2 KSIFITG-AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGG 76 (260)
T ss_pred cEEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 3466555 4456666665543 36799999999887666544332 235889999995544322211100 035
Q ss_pred CeeEEEEcCCCCCC
Q psy7093 216 KFDLVVSNPPYVPS 229 (322)
Q Consensus 216 ~fDlIv~NPPy~~~ 229 (322)
++|.+|.|..+...
T Consensus 77 ~id~vi~~ag~~~~ 90 (260)
T PRK08267 77 RLDVLFNNAGILRG 90 (260)
T ss_pred CCCEEEECCCCCCC
Confidence 78999999876543
No 389
>PRK06949 short chain dehydrogenase; Provisional
Probab=82.90 E-value=7.3 Score=34.24 Aligned_cols=84 Identities=8% Similarity=0.104 Sum_probs=52.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
++||=.| |+|.++..+++.+ .+.+|++++.+++.++.........+ .++.++..|+.+......+... ...++
T Consensus 10 k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (258)
T PRK06949 10 KVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVTDYQSIKAAVAHAETEAGT 86 (258)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 5677766 6677777776654 35789999999887766655554332 3588889998443322211100 01246
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|+||.|....
T Consensus 87 ~d~li~~ag~~ 97 (258)
T PRK06949 87 IDILVNNSGVS 97 (258)
T ss_pred CCEEEECCCCC
Confidence 89999987653
No 390
>PRK08862 short chain dehydrogenase; Provisional
Probab=82.87 E-value=6 Score=34.61 Aligned_cols=83 Identities=17% Similarity=0.151 Sum_probs=51.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC-
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ- 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~- 215 (322)
+++|=.|+++| ++.+++..+ .+.+|+.++.+++.++.+.+.+...+ .++..+..|+.++.....+.... ..+
T Consensus 6 k~~lVtGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (227)
T PRK08862 6 SIILITSAGSV-LGRTISCHFARLGATLILCDQDQSALKDTYEQCSALT--DNVYSFQLKDFSQESIRHLFDAIEQQFNR 82 (227)
T ss_pred eEEEEECCccH-HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 56777776665 344444433 37899999999988877666665544 34667778885544332221110 124
Q ss_pred CeeEEEEcCCC
Q psy7093 216 KFDLVVSNPPY 226 (322)
Q Consensus 216 ~fDlIv~NPPy 226 (322)
..|++|.|.-+
T Consensus 83 ~iD~li~nag~ 93 (227)
T PRK08862 83 APDVLVNNWTS 93 (227)
T ss_pred CCCEEEECCcc
Confidence 79999999743
No 391
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=82.53 E-value=0.82 Score=40.24 Aligned_cols=121 Identities=15% Similarity=0.183 Sum_probs=65.3
Q ss_pred cCc-hhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccCCCcccccccCcC-c-CC-CCeeE
Q psy7093 147 GSG-TGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVM-HNVANQLQVFHAEIDSKGQVKNLQPD-L-LE-QKFDL 219 (322)
Q Consensus 147 g~G-sG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~-~~l~~~i~~~~~D~~~~~~~~~l~~~-~-~~-~~fDl 219 (322)
|+| ++.++..+++.+ .+++|+.++.+.+.++.+-+.+.. .+ ..++..|+.++...+.+... . .. ++.|+
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~----~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~ 76 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYG----AEVIQCDLSDEESVEALFDEAVERFGGRIDI 76 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTT----SEEEESCTTSHHHHHHHHHHHHHHHCSSESE
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcC----CceEeecCcchHHHHHHHHHHHhhcCCCeEE
Confidence 344 344555444432 378999999999986555444443 33 23589998655443332110 0 12 78999
Q ss_pred EEEcCCCCCC----CCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 220 VVSNPPYVPS----LDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 220 Iv~NPPy~~~----~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
+|.|..+... ..+..+..+ .|+.... ..+--...+++.+...++++|.+++.
T Consensus 77 lV~~a~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~~~~~~~~gsii~i 132 (241)
T PF13561_consen 77 LVNNAGISPPSNVEKPLLDLSEE--DWDKTFD-----INVFSPFLLAQAALPLMKKGGSIINI 132 (241)
T ss_dssp EEEEEESCTGGGTSSSGGGSHHH--HHHHHHH-----HHTHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred EEecccccccccCCCChHhCCHH--HHHHHHH-----HHHHHHHHHHHHHHHHHhhCCCcccc
Confidence 9998765543 222222111 1111000 01111345666677788899988774
No 392
>PRK06953 short chain dehydrogenase; Provisional
Probab=82.50 E-value=8.3 Score=33.22 Aligned_cols=77 Identities=13% Similarity=0.182 Sum_probs=45.7
Q ss_pred eEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeE
Q psy7093 142 RMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL 219 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDl 219 (322)
+++=.| |+|.++..+++.+ .+.+|++++.++..++..+ ..+ ++++..|+.+......+.......++|+
T Consensus 3 ~vlvtG-~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~~----~~~----~~~~~~D~~~~~~v~~~~~~~~~~~~d~ 73 (222)
T PRK06953 3 TVLIVG-ASRGIGREFVRQYRADGWRVIATARDAAALAALQ----ALG----AEALALDVADPASVAGLAWKLDGEALDA 73 (222)
T ss_pred eEEEEc-CCCchhHHHHHHHHhCCCEEEEEECCHHHHHHHH----hcc----ceEEEecCCCHHHHHHHHHHhcCCCCCE
Confidence 455344 4566666666543 3679999999876554322 122 5678899855443322211122347899
Q ss_pred EEEcCCCC
Q psy7093 220 VVSNPPYV 227 (322)
Q Consensus 220 Iv~NPPy~ 227 (322)
|+.|..+.
T Consensus 74 vi~~ag~~ 81 (222)
T PRK06953 74 AVYVAGVY 81 (222)
T ss_pred EEECCCcc
Confidence 99998765
No 393
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=82.43 E-value=2.2 Score=32.83 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=41.5
Q ss_pred CchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEE
Q psy7093 148 SGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVS 222 (322)
Q Consensus 148 ~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~ 222 (322)
||.|.++..+++.+ .+..|+.+|.+++.++.++.. + +.++.+|..++..++.. .-.+.|.|++
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~~~l~~a----~i~~a~~vv~ 68 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDPEVLERA----GIEKADAVVI 68 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSHHHHHHT----TGGCESEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhhhHHhhc----CccccCEEEE
Confidence 67777887777754 345899999999987776532 2 67899999654443332 2346787776
No 394
>PRK06181 short chain dehydrogenase; Provisional
Probab=81.94 E-value=5.2 Score=35.43 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=50.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
.++|=.| |+|.++..+++.+ .+.+|++++.++...+.....+...+ .++.++..|+.+......+.... ..+.
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3566444 6666777666543 35799999999877666555554433 45888899985433222111000 1246
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|.||.|.-..
T Consensus 79 id~vi~~ag~~ 89 (263)
T PRK06181 79 IDILVNNAGIT 89 (263)
T ss_pred CCEEEECCCcc
Confidence 89999986543
No 395
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=81.87 E-value=32 Score=31.07 Aligned_cols=116 Identities=20% Similarity=0.330 Sum_probs=59.6
Q ss_pred CCeEEEEcCchh---HHHHHHHHh-CC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCC
Q psy7093 140 PTRMIEIGSGTG---AITISLLKH-FP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLE 214 (322)
Q Consensus 140 ~~~iLDlg~GsG---~~~~~la~~-~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~ 214 (322)
+.+|+-+|.||- +-+.++.++ +| ++-++-.|+.+- +++.-..+.+|. ... ..+
T Consensus 62 nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~-------------vSDa~~~~~~Dc-----~t~----~~~ 119 (299)
T PF06460_consen 62 NMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY-------------VSDADQSIVGDC-----RTY----MPP 119 (299)
T ss_dssp T-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS---------------B-SSSEEEES-G-----GGE----EES
T ss_pred CcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh-------------ccccCCceeccc-----ccc----CCC
Confidence 379999999974 445555554 54 456677777642 122234566776 221 246
Q ss_pred CCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCC--ChhHHHHHHHHHHhccCccCcEEEEEEcC-CCHHHHHHHH
Q psy7093 215 QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH--DGLNIIKPICVFGSNYLKPNGSIFLETNH-DHLDKIKEWL 291 (322)
Q Consensus 215 ~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~--~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~-~~~~~~~~~l 291 (322)
.+||+|||+. |.+..--..|+ ..-.++.-+...+.+.|+-||.+++-+.+ .....+-+++
T Consensus 120 ~k~DlIiSDm-----------------Yd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvaiKiTE~Sw~~~Lyel~ 182 (299)
T PF06460_consen 120 DKFDLIISDM-----------------YDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAIKITEHSWNAQLYELM 182 (299)
T ss_dssp S-EEEEEE---------------------TTS-SS-S------THHHHHHHHHHHHEEEEEEEEEEE-SSS--HHHHHHH
T ss_pred CcccEEEEec-----------------ccccccccccccCCccccHHHHHHHHHhhhhcCceEEEEeecccccHHHHHHH
Confidence 7999999963 22222222222 11234666777888999999999997654 4457777777
Q ss_pred HHc
Q psy7093 292 GIC 294 (322)
Q Consensus 292 ~~~ 294 (322)
...
T Consensus 183 ~~F 185 (299)
T PF06460_consen 183 GYF 185 (299)
T ss_dssp TTE
T ss_pred hhc
Confidence 654
No 396
>PRK05854 short chain dehydrogenase; Provisional
Probab=81.74 E-value=6.8 Score=36.08 Aligned_cols=86 Identities=13% Similarity=0.186 Sum_probs=52.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++++=.|+ +|.++.++++.+ .+.+|+.+..+.+..+.+...+....-..++.++..|+.+......+...+ ..++
T Consensus 15 k~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~~ 93 (313)
T PRK05854 15 KRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGRP 93 (313)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence 55665554 566666666543 368999999988777666655543321235888999985543322221110 2357
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|....
T Consensus 94 iD~li~nAG~~ 104 (313)
T PRK05854 94 IHLLINNAGVM 104 (313)
T ss_pred ccEEEECCccc
Confidence 89999997653
No 397
>KOG0725|consensus
Probab=81.73 E-value=13 Score=33.76 Aligned_cols=129 Identities=20% Similarity=0.147 Sum_probs=72.9
Q ss_pred CeEEEEcCchh---HHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCcEEEEEccCCCcccccccCc--CcC-
Q psy7093 141 TRMIEIGSGTG---AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV-ANQLQVFHAEIDSKGQVKNLQP--DLL- 213 (322)
Q Consensus 141 ~~iLDlg~GsG---~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l-~~~i~~~~~D~~~~~~~~~l~~--~~~- 213 (322)
+.+|=-|.++| .++..+++. +++|+.++.+++.++.+.......+. ..++..+.+|+.+....+.+.. ...
T Consensus 9 kvalVTG~s~GIG~aia~~la~~--Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~~ 86 (270)
T KOG0725|consen 9 KVALVTGGSSGIGKAIALLLAKA--GAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEKF 86 (270)
T ss_pred cEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHHh
Confidence 45666665555 445555555 89999999999998887776665544 3468888999843322111111 011
Q ss_pred CCCeeEEEEcCCCCCCC-CCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCcc--CcEEEE
Q psy7093 214 EQKFDLVVSNPPYVPSL-DIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP--NGSIFL 277 (322)
Q Consensus 214 ~~~fDlIv~NPPy~~~~-~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~--gG~l~~ 277 (322)
.++.|++|.|....... ....++.++.+.--..-+.| -+-.+...+..+|+. ||.+++
T Consensus 87 ~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G------~~~~~~~~a~~~~~~~~gg~I~~ 147 (270)
T KOG0725|consen 87 FGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRG------SAFCLKQAARPMLKKSKGGSIVN 147 (270)
T ss_pred CCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchh------HHHHHHHHHHHHHHhcCCceEEE
Confidence 47899999998765544 23334444322111111110 123444455566665 556555
No 398
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=81.45 E-value=1.1 Score=34.80 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=23.1
Q ss_pred ccCCCChhHHHHHHHHHHhccCccCcEEEEEE
Q psy7093 248 LDGGHDGLNIIKPICVFGSNYLKPNGSIFLET 279 (322)
Q Consensus 248 l~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~ 279 (322)
|-.|++|+ ..+++.+.+.|+|||.+++|-
T Consensus 16 Ln~GD~Gl---~~~f~~~~~~L~pGG~lilEp 44 (110)
T PF06859_consen 16 LNWGDEGL---KRFFRRIYSLLRPGGILILEP 44 (110)
T ss_dssp HHHHHHHH---HHHHHHHHHHEEEEEEEEEE-
T ss_pred ecCcCHHH---HHHHHHHHHhhCCCCEEEEeC
Confidence 33455554 699999999999999999986
No 399
>PRK05855 short chain dehydrogenase; Validated
Probab=81.41 E-value=4.8 Score=40.02 Aligned_cols=87 Identities=11% Similarity=0.077 Sum_probs=55.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
.++|=. .|+|.++.++++.+ .+.+|+.++.+...++.+...++..+ .++.++..|+.++.....+.... ..++
T Consensus 316 ~~~lv~-G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 392 (582)
T PRK05855 316 KLVVVT-GAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRAEHGV 392 (582)
T ss_pred CEEEEE-CCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 456544 45777777777655 36789999999887776655555444 25888999996554332221110 1357
Q ss_pred eeEEEEcCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSL 230 (322)
Q Consensus 217 fDlIv~NPPy~~~~ 230 (322)
.|++|.|.-.....
T Consensus 393 id~lv~~Ag~~~~~ 406 (582)
T PRK05855 393 PDIVVNNAGIGMAG 406 (582)
T ss_pred CcEEEECCccCCCC
Confidence 89999997654433
No 400
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=81.28 E-value=7 Score=33.63 Aligned_cols=137 Identities=10% Similarity=0.134 Sum_probs=78.2
Q ss_pred CCeEEEEcCchhHHHHHHHHh---CC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCC
Q psy7093 140 PTRMIEIGSGTGAITISLLKH---FP-KLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQ 215 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~---~~-~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~ 215 (322)
|..|++.|+-.|.-++..|.. .+ ..+|+++|+|-..+.-+... ..+|.|+.++-++++-.+.... ..++
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~-~~~~ 142 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRR-LKNE 142 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHH-HhcC
Confidence 368999999888777766653 22 36899999987665433221 2459999999855542222111 1122
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEE---------------c
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET---------------N 280 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~---------------~ 280 (322)
.--+.++ ....++ ... .-+-++....+|.-|-++++|- |
T Consensus 143 y~kIfvi------lDsdHs-~~h-------------------vLAel~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g 196 (237)
T COG3510 143 YPKIFVI------LDSDHS-MEH-------------------VLAELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFG 196 (237)
T ss_pred CCcEEEE------ecCCch-HHH-------------------HHHHHHHhhhHhhcCceEEEecccccCCCCcccchhcC
Confidence 2222222 011111 111 2245666778888888888863 3
Q ss_pred CCCHHHHHHHHHHcCCCCceeeEEEecCCCC
Q psy7093 281 HDHLDKIKEWLGICGHHMKLKLVENYKDFNN 311 (322)
Q Consensus 281 ~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g 311 (322)
.+-...+...+++++. .|+...-..+.+|
T Consensus 197 ~gP~~AVe~ylr~~p~--~yEiD~~~~~kfg 225 (237)
T COG3510 197 GGPYEAVEAYLREFPQ--DYEIDTSRENKFG 225 (237)
T ss_pred CChHHHHHHHHHhCCc--ccccchhhHhhcc
Confidence 3345778888888873 3554443444333
No 401
>PRK07677 short chain dehydrogenase; Provisional
Probab=81.27 E-value=7.3 Score=34.26 Aligned_cols=82 Identities=11% Similarity=0.221 Sum_probs=49.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++..+++.+ .+.+|++++.++..++.+...+...+ .++.++..|+.++.....+.... ..++
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGR 78 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence 45675665 444555555443 36789999999877666555444333 45888999985544332211100 1256
Q ss_pred eeEEEEcCC
Q psy7093 217 FDLVVSNPP 225 (322)
Q Consensus 217 fDlIv~NPP 225 (322)
.|.+|.|..
T Consensus 79 id~lI~~ag 87 (252)
T PRK07677 79 IDALINNAA 87 (252)
T ss_pred ccEEEECCC
Confidence 899999864
No 402
>PRK08643 acetoin reductase; Validated
Probab=81.18 E-value=5.8 Score=34.94 Aligned_cols=87 Identities=14% Similarity=0.220 Sum_probs=53.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.++..++.....+...+ .++.++..|+.++.....+.... ..++
T Consensus 3 k~~lItG-as~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 3 KVALVTG-AGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG--GKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 4555444 6666777666654 36789999999877766666555433 34788899985543222211100 1256
Q ss_pred eeEEEEcCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSL 230 (322)
Q Consensus 217 fDlIv~NPPy~~~~ 230 (322)
.|.+|.|..+....
T Consensus 80 id~vi~~ag~~~~~ 93 (256)
T PRK08643 80 LNVVVNNAGVAPTT 93 (256)
T ss_pred CCEEEECCCCCCCC
Confidence 89999998765433
No 403
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=81.12 E-value=14 Score=35.47 Aligned_cols=40 Identities=15% Similarity=0.099 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHhccCccCcEEEEEE--cCCCHHHHHHHHHH
Q psy7093 254 GLNIIKPICVFGSNYLKPNGSIFLET--NHDHLDKIKEWLGI 293 (322)
Q Consensus 254 gl~~~~~~l~~~~~~Lk~gG~l~~e~--~~~~~~~~~~~l~~ 293 (322)
.|.+.+...+.....|++|-.+++|- .++.-+.+...+.+
T Consensus 103 Dls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle 144 (436)
T COG0677 103 DLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE 144 (436)
T ss_pred ChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence 35667889999999999999999984 45555555555444
No 404
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=81.04 E-value=5.2 Score=35.11 Aligned_cols=87 Identities=8% Similarity=0.055 Sum_probs=55.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++| +-.|+|.++..+++.+ .+.+|++++.++.........+...+ .++.++.+|+.++.....+.... ..+.
T Consensus 5 ~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK12429 5 KVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETFGG 81 (258)
T ss_pred CEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4555 5556788888888764 35789999999887766655554433 35888999985544322211100 1246
Q ss_pred eeEEEEcCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSL 230 (322)
Q Consensus 217 fDlIv~NPPy~~~~ 230 (322)
.|+||.|..+....
T Consensus 82 ~d~vi~~a~~~~~~ 95 (258)
T PRK12429 82 VDILVNNAGIQHVA 95 (258)
T ss_pred CCEEEECCCCCCCC
Confidence 89999987655443
No 405
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.98 E-value=9.4 Score=33.04 Aligned_cols=81 Identities=7% Similarity=0.086 Sum_probs=48.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++|+=.|+ +|.++..+++.+ .+.+|++++.++..+.......... .++.++.+|+.++.....+.... ..++
T Consensus 6 ~~vlItGa-~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 81 (238)
T PRK05786 6 KKVAIIGV-SEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVLNA 81 (238)
T ss_pred cEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 57777776 465666666543 3679999999987766554433322 24788899985443222211100 1245
Q ss_pred eeEEEEcCC
Q psy7093 217 FDLVVSNPP 225 (322)
Q Consensus 217 fDlIv~NPP 225 (322)
.|.++.|..
T Consensus 82 id~ii~~ag 90 (238)
T PRK05786 82 IDGLVVTVG 90 (238)
T ss_pred CCEEEEcCC
Confidence 788888765
No 406
>PRK07904 short chain dehydrogenase; Provisional
Probab=80.96 E-value=4.9 Score=35.69 Aligned_cols=85 Identities=8% Similarity=0.155 Sum_probs=52.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC---CCCEEEEEeCCHHH-HHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc-CcCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF---PKLKAIAIDQSKHA-CDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP-DLLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~---~~~~v~~vDis~~a-l~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~-~~~~~ 215 (322)
.+||=.|+ +|.++..+++.+ ++.+|+.++.+++. ++.+.+.+...+ ..+++++..|+.+.+....+.. ....+
T Consensus 9 ~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~-~~~v~~~~~D~~~~~~~~~~~~~~~~~g 86 (253)
T PRK07904 9 QTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAG-ASSVEVIDFDALDTDSHPKVIDAAFAGG 86 (253)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcC-CCceEEEEecCCChHHHHHHHHHHHhcC
Confidence 56776665 667777777653 34799999988764 555544554443 2258999999955443221111 11125
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
..|++|.|..+.
T Consensus 87 ~id~li~~ag~~ 98 (253)
T PRK07904 87 DVDVAIVAFGLL 98 (253)
T ss_pred CCCEEEEeeecC
Confidence 799999887653
No 407
>PRK06128 oxidoreductase; Provisional
Probab=80.93 E-value=7.9 Score=35.28 Aligned_cols=127 Identities=12% Similarity=0.091 Sum_probs=63.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHH--HHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHA--CDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLE 214 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~a--l~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~ 214 (322)
+++|=.| |+|.++..+++.+ .+.+|+.+..+... .+.....+...+ .++.++.+|+.+......+... -..
T Consensus 56 k~vlITG-as~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 132 (300)
T PRK06128 56 RKALITG-ADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVKEL 132 (300)
T ss_pred CEEEEec-CCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence 5677666 5666666666654 36788877665332 222222333333 3477889998543322221110 012
Q ss_pred CCeeEEEEcCCCCC-CCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 215 QKFDLVVSNPPYVP-SLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 215 ~~fDlIv~NPPy~~-~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
++.|++|.|..+.. ...+..+..+. ++..... .+.-.-.+++.+...++++|.+++
T Consensus 133 g~iD~lV~nAg~~~~~~~~~~~~~~~--~~~~~~~-----N~~g~~~l~~~~~~~~~~~~~iv~ 189 (300)
T PRK06128 133 GGLDILVNIAGKQTAVKDIADITTEQ--FDATFKT-----NVYAMFWLCKAAIPHLPPGASIIN 189 (300)
T ss_pred CCCCEEEECCcccCCCCChhhCCHHH--HHHHHHH-----HhHHHHHHHHHHHHhcCcCCEEEE
Confidence 46899999986532 12222222211 1100000 011123466667777788887766
No 408
>PRK07814 short chain dehydrogenase; Provisional
Probab=80.90 E-value=6.5 Score=34.94 Aligned_cols=84 Identities=12% Similarity=0.144 Sum_probs=52.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|++++.+++.++.....+...+ .++.++..|+.++.......... ..++
T Consensus 11 ~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 87 (263)
T PRK07814 11 QVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAFGR 87 (263)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5677666 5666777666543 36799999999877665555544333 45888899985443222111000 1247
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
+|.||.|.-+.
T Consensus 88 id~vi~~Ag~~ 98 (263)
T PRK07814 88 LDIVVNNVGGT 98 (263)
T ss_pred CCEEEECCCCC
Confidence 89999987653
No 409
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=80.84 E-value=9.9 Score=34.23 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+||=.|+| .|.+++.+|+.....+|+++|.++..++.+++
T Consensus 121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 4677777764 45666777777644459999999988777654
No 410
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.81 E-value=7.1 Score=34.79 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=45.7
Q ss_pred CeEEEEcC-chhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGS-GTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~-GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.|+ |++.++.++++.+ .+.+|+.++......+..++-....+ . ..++..|+.++...+.+.... ..+
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG--S-DLVFPCDVASDEQIDALFASLGQHWD 83 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcC--C-cceeeccCCCHHHHHHHHHHHHHHhC
Confidence 57777776 4667777766654 36788887653222222221112222 1 335778985544333221111 136
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
++|++|.|..+.
T Consensus 84 ~iD~lvnnAG~~ 95 (260)
T PRK06997 84 GLDGLVHSIGFA 95 (260)
T ss_pred CCcEEEEccccC
Confidence 899999998654
No 411
>PRK07890 short chain dehydrogenase; Provisional
Probab=80.69 E-value=12 Score=32.72 Aligned_cols=84 Identities=13% Similarity=0.048 Sum_probs=51.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.++..++.....+...+ .++.++..|+.++.....+... ...++
T Consensus 6 k~vlItG-a~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 82 (258)
T PRK07890 6 KVVVVSG-VGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFGR 82 (258)
T ss_pred CEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 5677554 5666666666543 36799999999877666555444333 3588899998554332221100 01256
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|.||.|.-+.
T Consensus 83 ~d~vi~~ag~~ 93 (258)
T PRK07890 83 VDALVNNAFRV 93 (258)
T ss_pred ccEEEECCccC
Confidence 89999987543
No 412
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=80.67 E-value=18 Score=32.65 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=36.0
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC--CCcEEEEEccC
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNV--ANQLQVFHAEI 199 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l--~~~i~~~~~D~ 199 (322)
..|+.+|||-=.-..-+... ++..++=+|. |+.++.-++-+...+. ..+.+++..|+
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl 141 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWP-DGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDL 141 (260)
T ss_pred cEEEEeCCccccHHHhcCCC-CCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCc
Confidence 57999999987776655322 2355555555 3455555555555432 45688888898
No 413
>PRK07832 short chain dehydrogenase; Provisional
Probab=80.66 E-value=6.5 Score=35.15 Aligned_cols=84 Identities=12% Similarity=0.079 Sum_probs=47.3
Q ss_pred EEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCCee
Q psy7093 143 MIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQKFD 218 (322)
Q Consensus 143 iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~fD 218 (322)
++=.| |+|.++..+++.+ .+.+|+.++.+++.++.+...+...+ ...+.++..|+.++.....+... ...++.|
T Consensus 3 vlItG-as~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 80 (272)
T PRK07832 3 CFVTG-AASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALG-GTVPEHRALDISDYDAVAAFAADIHAAHGSMD 80 (272)
T ss_pred EEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 33344 4556666655533 36789999998887766655554433 22245567888443322211110 0124689
Q ss_pred EEEEcCCCCC
Q psy7093 219 LVVSNPPYVP 228 (322)
Q Consensus 219 lIv~NPPy~~ 228 (322)
.+|.|..+..
T Consensus 81 ~lv~~ag~~~ 90 (272)
T PRK07832 81 VVMNIAGISA 90 (272)
T ss_pred EEEECCCCCC
Confidence 9999876543
No 414
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=80.46 E-value=11 Score=33.41 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=52.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.|+++ .++.++++.+ .+.+|+.++.++..++.+..+....+ .++.++..|+.+......+... ...++
T Consensus 11 k~~lItGa~~-~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 87 (265)
T PRK07097 11 KIALITGASY-GIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKEVGV 87 (265)
T ss_pred CEEEEeCCCc-hHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 5677766554 4444444432 26789999999888777666665443 3588899999554432221110 01256
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.+|.|..+..
T Consensus 88 id~li~~ag~~~ 99 (265)
T PRK07097 88 IDILVNNAGIIK 99 (265)
T ss_pred CCEEEECCCCCC
Confidence 899999987654
No 415
>PRK06484 short chain dehydrogenase; Validated
Probab=80.15 E-value=8.6 Score=37.99 Aligned_cols=81 Identities=15% Similarity=0.233 Sum_probs=48.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+.+|=.| |+|.++..+++.+ .+.+|+.++.++..++...+.. + .++..+..|+.++.....+.... ..++
T Consensus 270 k~~lItG-as~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 343 (520)
T PRK06484 270 RVVAITG-GARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEAL---G--DEHLSVQADITDEAAVESAFAQIQARWGR 343 (520)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CceeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4555444 4566666666643 3679999999887766554322 2 34667888985544332221100 1257
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|.-+.
T Consensus 344 id~li~nAg~~ 354 (520)
T PRK06484 344 LDVLVNNAGIA 354 (520)
T ss_pred CCEEEECCCCc
Confidence 89999997653
No 416
>PRK06197 short chain dehydrogenase; Provisional
Probab=80.12 E-value=6.4 Score=35.92 Aligned_cols=86 Identities=7% Similarity=0.100 Sum_probs=51.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++|| +-.|+|.++..+++.+ .+.+|+.++.+....+.+.+.+....-..++.++..|+.+......+.... ..++
T Consensus 17 k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~ 95 (306)
T PRK06197 17 RVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAAYPR 95 (306)
T ss_pred CEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhhCCC
Confidence 5666 4446677777777643 257899999887776655555443211235888999985543222211101 1257
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|....
T Consensus 96 iD~li~nAg~~ 106 (306)
T PRK06197 96 IDLLINNAGVM 106 (306)
T ss_pred CCEEEECCccc
Confidence 89999987543
No 417
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=80.02 E-value=7.4 Score=34.26 Aligned_cols=85 Identities=8% Similarity=0.049 Sum_probs=52.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++| +-.|+|.++..++..+ .+.+|++++.++...+.+.+.+...+ .++.++.+|+.+.......... ...++
T Consensus 8 ~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 84 (262)
T PRK13394 8 KTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAG--GKAIGVAMDVTNEDAVNAGIDKVAERFGS 84 (262)
T ss_pred CEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcC--ceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5566 5566677777766654 35689999999877766655554433 3578889998554332221110 01246
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.||.|..+..
T Consensus 85 ~d~vi~~ag~~~ 96 (262)
T PRK13394 85 VDILVSNAGIQI 96 (262)
T ss_pred CCEEEECCccCC
Confidence 899999876543
No 418
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=79.92 E-value=8.1 Score=35.66 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=30.5
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+||-.|+| .|..++.+|+..+...+++++.++...+.+++
T Consensus 168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 4677777765 47788888888653478899888877666553
No 419
>PRK06940 short chain dehydrogenase; Provisional
Probab=79.83 E-value=3.6 Score=37.08 Aligned_cols=82 Identities=13% Similarity=0.161 Sum_probs=50.9
Q ss_pred eEEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc-CCCCeeE
Q psy7093 142 RMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL-LEQKFDL 219 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~-~~~~fDl 219 (322)
.++=-| +|.++.++++.+ .+.+|+.++.++..++.+.+.+...+ .++.++..|+.+......+.... ..++.|+
T Consensus 4 ~~lItG--a~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIG--AGGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEEC--CChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 344334 356888888765 35789999998877665554444333 35788899986544332221110 1257899
Q ss_pred EEEcCCCC
Q psy7093 220 VVSNPPYV 227 (322)
Q Consensus 220 Iv~NPPy~ 227 (322)
+|.|....
T Consensus 80 li~nAG~~ 87 (275)
T PRK06940 80 LVHTAGVS 87 (275)
T ss_pred EEECCCcC
Confidence 99998653
No 420
>PRK05650 short chain dehydrogenase; Provisional
Probab=79.78 E-value=8.1 Score=34.41 Aligned_cols=87 Identities=10% Similarity=0.048 Sum_probs=53.1
Q ss_pred eEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCCe
Q psy7093 142 RMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQKF 217 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~f 217 (322)
+||=.| |+|.++..+++.+ .+.+|+.++.+...++.+...+...+ .++.++.+|+.++.....+... ...+++
T Consensus 2 ~vlVtG-asggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 2 RVMITG-AASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG--GDGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 455444 5666666666543 36789999999877766655554433 3588889998554332221110 012578
Q ss_pred eEEEEcCCCCCCCC
Q psy7093 218 DLVVSNPPYVPSLD 231 (322)
Q Consensus 218 DlIv~NPPy~~~~~ 231 (322)
|.+|.|........
T Consensus 79 d~lI~~ag~~~~~~ 92 (270)
T PRK05650 79 DVIVNNAGVASGGF 92 (270)
T ss_pred CEEEECCCCCCCCC
Confidence 99999977654433
No 421
>PRK06196 oxidoreductase; Provisional
Probab=79.74 E-value=4.2 Score=37.40 Aligned_cols=80 Identities=10% Similarity=0.192 Sum_probs=50.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++||=.| |+|.++.++++.+ .+.+|++++.+++.++.+...+. ++.++.+|+.+....+.+.... ..++
T Consensus 27 k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d~~~v~~~~~~~~~~~~~ 99 (315)
T PRK06196 27 KTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID------GVEVVMLDLADLESVRAFAERFLDSGRR 99 (315)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------hCeEEEccCCCHHHHHHHHHHHHhcCCC
Confidence 5677666 5677777777654 36789999998876654443332 2678889985543322211100 1257
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|..+.
T Consensus 100 iD~li~nAg~~ 110 (315)
T PRK06196 100 IDILINNAGVM 110 (315)
T ss_pred CCEEEECCCCC
Confidence 89999998654
No 422
>PRK07806 short chain dehydrogenase; Provisional
Probab=79.63 E-value=15 Score=31.98 Aligned_cols=122 Identities=9% Similarity=0.046 Sum_probs=63.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCH-HHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSK-HACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~-~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.| |+|.++..+++.+ .+.+|++++.+. ...+.....+...+ .++.++.+|+.+++....+.... ..+
T Consensus 7 k~vlItG-asggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (248)
T PRK07806 7 KTALVTG-SSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREEFG 83 (248)
T ss_pred cEEEEEC-CCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 5677666 4556666666643 367888887654 23333333333322 35788899996544332211100 124
Q ss_pred CeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEE
Q psy7093 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLE 278 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e 278 (322)
..|.+|.|......... .|...+.. .......+++.+...++.+|.+++.
T Consensus 84 ~~d~vi~~ag~~~~~~~----------~~~~~~~v---n~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 84 GLDALVLNASGGMESGM----------DEDYAMRL---NRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCcEEEECCCCCCCCCC----------CcceeeEe---eeHHHHHHHHHHHhhccCCceEEEE
Confidence 68999998754321110 11111111 1112345666777776666776653
No 423
>PTZ00357 methyltransferase; Provisional
Probab=79.50 E-value=4.9 Score=41.11 Aligned_cols=83 Identities=20% Similarity=0.246 Sum_probs=48.3
Q ss_pred CeEEEEcCchhHHHHHHHHh---C-CCCEEEEEeCCHHHHHHHHHHHHHc-CC-------CCcEEEEEccCCCccccc--
Q psy7093 141 TRMIEIGSGTGAITISLLKH---F-PKLKAIAIDQSKHACDLTEQNAVMH-NV-------ANQLQVFHAEIDSKGQVK-- 206 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~---~-~~~~v~~vDis~~al~~A~~n~~~~-~l-------~~~i~~~~~D~~~~~~~~-- 206 (322)
..|+=+|+|-|-+.-...+. . -..+|++||.++.+......+.... .. .++|+++..|++.=..-+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 35899999999775444333 2 1368999999977655555443221 11 346999999983200000
Q ss_pred -ccCcCcCCCCeeEEEEc
Q psy7093 207 -NLQPDLLEQKFDLVVSN 223 (322)
Q Consensus 207 -~l~~~~~~~~fDlIv~N 223 (322)
........+++|+|||-
T Consensus 782 ~s~~~P~~~gKaDIVVSE 799 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVSE 799 (1072)
T ss_pred ccccccccccccceehHh
Confidence 00000012479999984
No 424
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.33 E-value=6.9 Score=34.15 Aligned_cols=84 Identities=8% Similarity=0.124 Sum_probs=51.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
.++|=.|+ +|.++..+++.+ .+.+|+.++.++..++.+...+...+ .++.+++.|+.+......+.... ..++
T Consensus 6 ~~~lItG~-~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (253)
T PRK08217 6 KVIVITGG-AQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVTDEEDVEATFAQIAEDFGQ 82 (253)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 57776664 566666666543 25789999999877766655554433 35788899984433221111100 1246
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
+|.||.|..+.
T Consensus 83 id~vi~~ag~~ 93 (253)
T PRK08217 83 LNGLINNAGIL 93 (253)
T ss_pred CCEEEECCCcc
Confidence 89999998653
No 425
>PRK06172 short chain dehydrogenase; Provisional
Probab=79.06 E-value=8.5 Score=33.77 Aligned_cols=84 Identities=13% Similarity=0.119 Sum_probs=53.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.|+ +|.++..+++.+ .+.+|+.++.+++.++.+...+...+ .++.++.+|+.+......+... ...++
T Consensus 8 k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 84 (253)
T PRK06172 8 KVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAYGR 84 (253)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 56777764 566666665543 25789999999887766666655443 4588899999554322221100 01257
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|.||.|..+.
T Consensus 85 id~li~~ag~~ 95 (253)
T PRK06172 85 LDYAFNNAGIE 95 (253)
T ss_pred CCEEEECCCCC
Confidence 89999997654
No 426
>PRK07791 short chain dehydrogenase; Provisional
Probab=78.89 E-value=8.2 Score=34.96 Aligned_cols=85 Identities=18% Similarity=0.165 Sum_probs=48.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCH---------HHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSK---------HACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ 209 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~---------~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~ 209 (322)
+++|=.|++ |.++..+++.+ .+.+|+.++.+. +.++.+...+...+ .++.++..|+.+......+.
T Consensus 7 k~~lITGas-~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~~ 83 (286)
T PRK07791 7 RVVIVTGAG-GGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAG--GEAVANGDDIADWDGAANLV 83 (286)
T ss_pred CEEEEECCC-chHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcC--CceEEEeCCCCCHHHHHHHH
Confidence 567766654 45555555433 367888888764 44444444444333 34778889985544322211
Q ss_pred cCc--CCCCeeEEEEcCCCCC
Q psy7093 210 PDL--LEQKFDLVVSNPPYVP 228 (322)
Q Consensus 210 ~~~--~~~~fDlIv~NPPy~~ 228 (322)
... ..++.|++|.|.-+..
T Consensus 84 ~~~~~~~g~id~lv~nAG~~~ 104 (286)
T PRK07791 84 DAAVETFGGLDVLVNNAGILR 104 (286)
T ss_pred HHHHHhcCCCCEEEECCCCCC
Confidence 100 1367899999986544
No 427
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=78.80 E-value=12 Score=32.87 Aligned_cols=83 Identities=10% Similarity=0.108 Sum_probs=48.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+.+|=.| |+|.++.++++.+ .+++|++++.+.. ....+.+...+ .++.++..|+.+......+-.. -..++
T Consensus 11 k~~lItG-~~~gIG~a~a~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 85 (253)
T PRK08993 11 KVAVVTG-CDTGLGQGMALGLAEAGCDIVGINIVEP--TETIEQVTALG--RRFLSLTADLRKIDGIPALLERAVAEFGH 85 (253)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEecCcch--HHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 5566665 5667777777754 3678999987643 22222333332 3578889998554333221110 01257
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|++|.|+-+..
T Consensus 86 ~D~li~~Ag~~~ 97 (253)
T PRK08993 86 IDILVNNAGLIR 97 (253)
T ss_pred CCEEEECCCCCC
Confidence 899999987643
No 428
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=78.30 E-value=5.9 Score=35.09 Aligned_cols=82 Identities=15% Similarity=0.205 Sum_probs=50.8
Q ss_pred eEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCCe
Q psy7093 142 RMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQKF 217 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~f 217 (322)
++|=.|+ +|.++.++++.+ .+.+|+.++.++..++.+...+...+ ++.++..|+.+....+.+... ...++.
T Consensus 2 ~vlItGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~d~~~~~~~~~~~~~~~g~i 77 (259)
T PRK08340 2 NVLVTAS-SRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG---EVYAVKADLSDKDDLKNLVKEAWELLGGI 77 (259)
T ss_pred eEEEEcC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 3555554 455666666543 36799999999888776666554332 478889998554433222110 013578
Q ss_pred eEEEEcCCCC
Q psy7093 218 DLVVSNPPYV 227 (322)
Q Consensus 218 DlIv~NPPy~ 227 (322)
|++|.|..+.
T Consensus 78 d~li~naG~~ 87 (259)
T PRK08340 78 DALVWNAGNV 87 (259)
T ss_pred CEEEECCCCC
Confidence 9999997653
No 429
>PRK06182 short chain dehydrogenase; Validated
Probab=78.30 E-value=9.6 Score=33.99 Aligned_cols=81 Identities=10% Similarity=0.137 Sum_probs=50.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++++=.| |+|.++..+++.+ .+.+|++++.+++.++... . ..+.++.+|+.++.....+.... ..+.
T Consensus 4 k~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~----~----~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 4 KVALVTG-ASSGIGKATARRLAAQGYTVYGAARRVDKMEDLA----S----LGVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----h----CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 5666555 5666777777654 3679999999887654322 1 13778889985544332221100 1247
Q ss_pred eeEEEEcCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSL 230 (322)
Q Consensus 217 fDlIv~NPPy~~~~ 230 (322)
.|++|.|..+....
T Consensus 75 id~li~~ag~~~~~ 88 (273)
T PRK06182 75 IDVLVNNAGYGSYG 88 (273)
T ss_pred CCEEEECCCcCCCC
Confidence 89999998775443
No 430
>PRK12747 short chain dehydrogenase; Provisional
Probab=78.27 E-value=16 Score=32.03 Aligned_cols=127 Identities=15% Similarity=0.134 Sum_probs=60.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEe-CCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCc----C--
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAID-QSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQP----D-- 211 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vD-is~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~----~-- 211 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++ .+++.++.....+...+ .++..+..|+.+......... .
T Consensus 5 k~~lItG-as~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (252)
T PRK12747 5 KVALVTG-ASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNG--GSAFSIGANLESLHGVEALYSSLDNELQ 81 (252)
T ss_pred CEEEEeC-CCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcC--CceEEEecccCCHHHHHHHHHHHHHHhh
Confidence 4566666 4455666666543 356787764 44454443333333322 346677788744321111100 0
Q ss_pred --cCCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 212 --LLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 212 --~~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+..++.|.+|.|..+...........+. ++..... .+.-...+++.+...++.+|.+++
T Consensus 82 ~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~--~~~~~~v-----N~~~~~~l~~~~~~~~~~~g~iv~ 142 (252)
T PRK12747 82 NRTGSTKFDILINNAGIGPGAFIEETTEQF--FDRMVSV-----NAKAPFFIIQQALSRLRDNSRIIN 142 (252)
T ss_pred hhcCCCCCCEEEECCCcCCCCCcccCCHHH--HHHHHHH-----hhhHHHHHHHHHHHHhhcCCeEEE
Confidence 0113789999998764433232222221 1110000 011123445556666666787766
No 431
>PRK09291 short chain dehydrogenase; Provisional
Probab=78.11 E-value=19 Score=31.46 Aligned_cols=81 Identities=12% Similarity=0.059 Sum_probs=50.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
++||=.|+ +|.++..+++.+ .+.+|++++.++...+.........+ .++.++.+|+.++...... ...+.|
T Consensus 3 ~~vlVtGa-sg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~----~~~~id 75 (257)
T PRK09291 3 KTILITGA-GSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRG--LALRVEKLDLTDAIDRAQA----AEWDVD 75 (257)
T ss_pred CEEEEeCC-CCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcceEEEeeCCCHHHHHHH----hcCCCC
Confidence 45665554 666776666543 36789999988776655554444433 2488889998543322211 124789
Q ss_pred EEEEcCCCCC
Q psy7093 219 LVVSNPPYVP 228 (322)
Q Consensus 219 lIv~NPPy~~ 228 (322)
+||.|..+..
T Consensus 76 ~vi~~ag~~~ 85 (257)
T PRK09291 76 VLLNNAGIGE 85 (257)
T ss_pred EEEECCCcCC
Confidence 9999876543
No 432
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=78.05 E-value=5.9 Score=37.32 Aligned_cols=41 Identities=24% Similarity=0.457 Sum_probs=37.1
Q ss_pred CeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 141 TRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 141 ~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
.+|+=+||| .|.+++.+++.++..+|+.+|.++.-++.|++
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 489999999 58888999999888999999999999999985
No 433
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=77.98 E-value=13 Score=33.96 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=29.4
Q ss_pred CeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 141 TRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 141 ~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
.++|=+|+| .|.+++.+|+.++...|+++|.++..++.|+
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~ 186 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGAT 186 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhh
Confidence 567777765 5777888888876556788899887766554
No 434
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=77.97 E-value=9.3 Score=39.46 Aligned_cols=87 Identities=16% Similarity=0.160 Sum_probs=52.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=. .|+|.++.++++.+ .+++|+++|.+...++.....+....-.+++.++..|+++.......... ...+.
T Consensus 415 kvvLVT-GasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~g~ 493 (676)
T TIGR02632 415 RVAFVT-GGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAYGG 493 (676)
T ss_pred CEEEEe-CCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence 456644 45677777776654 36799999999887766554443211123477889999654433221110 01257
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
+|++|.|..+..
T Consensus 494 iDilV~nAG~~~ 505 (676)
T TIGR02632 494 VDIVVNNAGIAT 505 (676)
T ss_pred CcEEEECCCCCC
Confidence 899999987544
No 435
>PRK12746 short chain dehydrogenase; Provisional
Probab=77.79 E-value=19 Score=31.48 Aligned_cols=85 Identities=18% Similarity=0.190 Sum_probs=46.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEE-eCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC----c-
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAI-DQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD----L- 212 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~v-Dis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~----~- 212 (322)
.+++=.| |+|.++..+++.+ .+.+|+.+ ..+...++.....+... ..++.+++.|+.+.......... +
T Consensus 7 ~~ilItG-asg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~d~~~i~~~~~~~~~~~~ 83 (254)
T PRK12746 7 KVALVTG-ASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESN--GGKAFLIEADLNSIDGVKKLVEQLKNELQ 83 (254)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCcEEEEEcCcCCHHHHHHHHHHHHHHhc
Confidence 5677555 6788888887754 35566554 45554433332222222 23588899999554332211000 0
Q ss_pred ---CCCCeeEEEEcCCCCC
Q psy7093 213 ---LEQKFDLVVSNPPYVP 228 (322)
Q Consensus 213 ---~~~~fDlIv~NPPy~~ 228 (322)
..+..|.||.|+-+..
T Consensus 84 ~~~~~~~id~vi~~ag~~~ 102 (254)
T PRK12746 84 IRVGTSEIDILVNNAGIGT 102 (254)
T ss_pred cccCCCCccEEEECCCCCC
Confidence 1136899999986543
No 436
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=77.68 E-value=9 Score=35.61 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=30.2
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+.+||=.|+| .|..++.+|+..+...++++|.+++..+.++
T Consensus 167 g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 208 (351)
T cd08285 167 GDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK 208 (351)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 3667766765 5667777888765557999999988777766
No 437
>PRK09186 flagellin modification protein A; Provisional
Probab=77.44 E-value=5.2 Score=35.15 Aligned_cols=83 Identities=18% Similarity=0.165 Sum_probs=50.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++..+++.+ .+.+|++++.+++.++.+...+....-...+.++.+|+.++.....+.... ..++
T Consensus 5 k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~ 83 (256)
T PRK09186 5 KTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYGK 83 (256)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 45665554 566777776654 357899999988877666555533211234677789996544332221100 1246
Q ss_pred eeEEEEcC
Q psy7093 217 FDLVVSNP 224 (322)
Q Consensus 217 fDlIv~NP 224 (322)
.|.+|.|.
T Consensus 84 id~vi~~A 91 (256)
T PRK09186 84 IDGAVNCA 91 (256)
T ss_pred ccEEEECC
Confidence 89999986
No 438
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.28 E-value=5.8 Score=34.49 Aligned_cols=86 Identities=19% Similarity=0.217 Sum_probs=53.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEE-eCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAI-DQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~v-Dis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
+++|=.| |+|.++..+++.+ .+.+++.+ +.++..++.....+... ..++.++..|+.+........... ..+
T Consensus 6 ~~ilI~G-asg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (247)
T PRK05565 6 KVAIVTG-ASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEE--GGDAIAVKADVSSEEDVENLVEQIVEKFG 82 (247)
T ss_pred CEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhc--CCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 4566555 5777777776643 35788888 98887776655555443 235889999995543322211000 124
Q ss_pred CeeEEEEcCCCCCC
Q psy7093 216 KFDLVVSNPPYVPS 229 (322)
Q Consensus 216 ~fDlIv~NPPy~~~ 229 (322)
.+|.||.|+.+...
T Consensus 83 ~id~vi~~ag~~~~ 96 (247)
T PRK05565 83 KIDILVNNAGISNF 96 (247)
T ss_pred CCCEEEECCCcCCC
Confidence 68999999877643
No 439
>PRK07041 short chain dehydrogenase; Provisional
Probab=77.26 E-value=10 Score=32.61 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=48.1
Q ss_pred CchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCC
Q psy7093 148 SGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPP 225 (322)
Q Consensus 148 ~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPP 225 (322)
.|+|.++..+++.+ .+.+|++++.++..+......+.. ..++.++..|+.+......+.. ..+++|.+|.|..
T Consensus 4 Gas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~---~~~~~~~~~Dl~~~~~~~~~~~--~~~~id~li~~ag 78 (230)
T PRK07041 4 GGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGG---GAPVRTAALDITDEAAVDAFFA--EAGPFDHVVITAA 78 (230)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCceEEEEccCCCHHHHHHHHH--hcCCCCEEEECCC
Confidence 45677777766654 367899999987766554443321 2358888999855443333211 1256899999976
Q ss_pred CCC
Q psy7093 226 YVP 228 (322)
Q Consensus 226 y~~ 228 (322)
...
T Consensus 79 ~~~ 81 (230)
T PRK07041 79 DTP 81 (230)
T ss_pred CCC
Confidence 543
No 440
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=77.04 E-value=13 Score=34.29 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=30.5
Q ss_pred CeEEEEc--CchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 141 TRMIEIG--SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 141 ~~iLDlg--~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
.+||=.| .|.|..++.+|+..+..+|++++.+++..+.+++
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~ 198 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKS 198 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence 5777776 4688888889998643389999998876666553
No 441
>PRK06138 short chain dehydrogenase; Provisional
Probab=76.98 E-value=11 Score=32.91 Aligned_cols=85 Identities=15% Similarity=0.169 Sum_probs=51.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++..+++.+ .+++|++++.+.+.......... . ..++.++.+|+.++.......... ..++
T Consensus 6 k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~--~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~ 81 (252)
T PRK06138 6 RVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-A--GGRAFARQGDVGSAEAVEALVDFVAARWGR 81 (252)
T ss_pred cEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-c--CCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 56666655 566666666543 25789999988876665554443 2 345888999985543322211000 1257
Q ss_pred eeEEEEcCCCCCC
Q psy7093 217 FDLVVSNPPYVPS 229 (322)
Q Consensus 217 fDlIv~NPPy~~~ 229 (322)
+|.||.|..+...
T Consensus 82 id~vi~~ag~~~~ 94 (252)
T PRK06138 82 LDVLVNNAGFGCG 94 (252)
T ss_pred CCEEEECCCCCCC
Confidence 8999998876543
No 442
>PRK07831 short chain dehydrogenase; Provisional
Probab=76.77 E-value=13 Score=32.87 Aligned_cols=89 Identities=11% Similarity=0.104 Sum_probs=51.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEEccCCCcccccccCcC--cCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVM-HNVANQLQVFHAEIDSKGQVKNLQPD--LLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~-~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~ 215 (322)
+++|=.|+.++.++..+++.+ .+.+|+.+|.++..++.+.+.++. .+ ..++.++..|+.++...+.+... ...+
T Consensus 18 k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 96 (262)
T PRK07831 18 KVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELG-LGRVEAVVCDVTSEAQVDALIDAAVERLG 96 (262)
T ss_pred CEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcC-CceEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 567766642113444444332 267899999988877766655543 22 13588889998544322221110 0125
Q ss_pred CeeEEEEcCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSL 230 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~ 230 (322)
+.|++|.|..+....
T Consensus 97 ~id~li~~ag~~~~~ 111 (262)
T PRK07831 97 RLDVLVNNAGLGGQT 111 (262)
T ss_pred CCCEEEECCCCCCCC
Confidence 789999998764433
No 443
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=76.77 E-value=44 Score=31.95 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=61.0
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEEccCCCcccccccCcCcCCCCeeEE
Q psy7093 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQ-LQVFHAEIDSKGQVKNLQPDLLEQKFDLV 220 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~-i~~~~~D~~~~~~~~~l~~~~~~~~fDlI 220 (322)
+|+=++-.-|.+++.++...|. .+ .| |--+-...+.|+..++++.. +++. +. ...+ .+.+|+|
T Consensus 47 ~~~i~nd~fGal~~~l~~~~~~-~~--~d-s~~~~~~~~~n~~~n~~~~~~~~~~--~~-----~~~~-----~~~~d~v 110 (378)
T PRK15001 47 PVLILNDAFGALSCALAEHKPY-SI--GD-SYISELATRENLRLNGIDESSVKFL--DS-----TADY-----PQQPGVV 110 (378)
T ss_pred CEEEEcCchhHHHHHHHhCCCC-ee--eh-HHHHHHHHHHHHHHcCCCcccceee--cc-----cccc-----cCCCCEE
Confidence 7999999999999999965332 11 33 23344566789999987643 4444 33 2222 3458999
Q ss_pred EEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 221 VSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 221 v~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
+. |+|.. .......+.++..+|.||+.++.
T Consensus 111 l~---~~PK~------------------------~~~l~~~l~~l~~~l~~~~~ii~ 140 (378)
T PRK15001 111 LI---KVPKT------------------------LALLEQQLRALRKVVTSDTRIIA 140 (378)
T ss_pred EE---EeCCC------------------------HHHHHHHHHHHHhhCCCCCEEEE
Confidence 88 22221 23356788889999999999753
No 444
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=76.73 E-value=14 Score=32.19 Aligned_cols=86 Identities=19% Similarity=0.255 Sum_probs=53.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|++++.+......+...+...+ .++.++.+|+.+....+.+.... ..++
T Consensus 4 ~~ilItG-as~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~ 80 (250)
T TIGR03206 4 KTAIVTG-GGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG--GNAQAFACDITDRDSVDTAVAAAEQALGP 80 (250)
T ss_pred CEEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5666665 4566666666543 25789999999887766665554432 35888999985433222211100 1246
Q ss_pred eeEEEEcCCCCCC
Q psy7093 217 FDLVVSNPPYVPS 229 (322)
Q Consensus 217 fDlIv~NPPy~~~ 229 (322)
.|++|.|..+...
T Consensus 81 ~d~vi~~ag~~~~ 93 (250)
T TIGR03206 81 VDVLVNNAGWDKF 93 (250)
T ss_pred CCEEEECCCCCCC
Confidence 8999999876543
No 445
>PRK05993 short chain dehydrogenase; Provisional
Probab=76.61 E-value=7.8 Score=34.79 Aligned_cols=82 Identities=12% Similarity=0.188 Sum_probs=49.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc---CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL---LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~---~~~ 215 (322)
++||=.|+ +|.++..+++.+ .+.+|++++.+++.++.... . .+.++..|+.+....+.+.... ..+
T Consensus 5 k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~----~~~~~~~Dl~d~~~~~~~~~~~~~~~~g 75 (277)
T PRK05993 5 RSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----E----GLEAFQLDYAEPESIAALVAQVLELSGG 75 (277)
T ss_pred CEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----C----CceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46666654 667776666653 36799999998876654321 1 3677889985544322211110 125
Q ss_pred CeeEEEEcCCCCCCCC
Q psy7093 216 KFDLVVSNPPYVPSLD 231 (322)
Q Consensus 216 ~fDlIv~NPPy~~~~~ 231 (322)
..|++|.|..+.....
T Consensus 76 ~id~li~~Ag~~~~~~ 91 (277)
T PRK05993 76 RLDALFNNGAYGQPGA 91 (277)
T ss_pred CccEEEECCCcCCCCC
Confidence 7899999976654433
No 446
>PRK08303 short chain dehydrogenase; Provisional
Probab=76.49 E-value=6.7 Score=36.09 Aligned_cols=81 Identities=11% Similarity=0.125 Sum_probs=47.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCH----------HHHHHHHHHHHHcCCCCcEEEEEccCCCccccccc
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSK----------HACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNL 208 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~----------~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l 208 (322)
+++|-.|+++| ++.++++.+ .+.+|+.++.+. +.++.+.+.+...+ .++.+++.|+.++...+.+
T Consensus 9 k~~lITGgs~G-IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~~~~~v~~~ 85 (305)
T PRK08303 9 KVALVAGATRG-AGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG--GRGIAVQVDHLVPEQVRAL 85 (305)
T ss_pred CEEEEeCCCch-HHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHH
Confidence 57777775544 666666544 367899988763 33333333343333 3477889999655433322
Q ss_pred CcCc--CCCCeeEEEEcC
Q psy7093 209 QPDL--LEQKFDLVVSNP 224 (322)
Q Consensus 209 ~~~~--~~~~fDlIv~NP 224 (322)
.... ..++.|++|.|.
T Consensus 86 ~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 86 VERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHcCCccEEEECC
Confidence 1111 125789999997
No 447
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=76.44 E-value=16 Score=32.14 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=53.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.++..+......+...+ .++.++..|+.++.....+.... ..++
T Consensus 10 k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 86 (254)
T PRK08085 10 KNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDIGP 86 (254)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence 5566665 5666766666654 36799999999877666555554433 34778889985544332211100 1256
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
+|.+|.|..+..
T Consensus 87 id~vi~~ag~~~ 98 (254)
T PRK08085 87 IDVLINNAGIQR 98 (254)
T ss_pred CCEEEECCCcCC
Confidence 899999986543
No 448
>PRK12937 short chain dehydrogenase; Provisional
Probab=75.88 E-value=29 Score=30.05 Aligned_cols=86 Identities=14% Similarity=0.153 Sum_probs=46.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQS-KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis-~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~ 215 (322)
+++|=.|+ +|.++..+++.+ .+.+++.+..+ +...+...+.+...+ .++.++..|+.+.......... ...+
T Consensus 6 ~~vlItG~-~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 82 (245)
T PRK12937 6 KVAIVTGA-SRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAG--GRAIAVQADVADAAAVTRLFDAAETAFG 82 (245)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45655554 666776666654 25677666543 333333333443333 4588889998543322211100 0124
Q ss_pred CeeEEEEcCCCCCC
Q psy7093 216 KFDLVVSNPPYVPS 229 (322)
Q Consensus 216 ~fDlIv~NPPy~~~ 229 (322)
+.|.+|.|......
T Consensus 83 ~id~vi~~ag~~~~ 96 (245)
T PRK12937 83 RIDVLVNNAGVMPL 96 (245)
T ss_pred CCCEEEECCCCCCC
Confidence 68999999876543
No 449
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=75.27 E-value=47 Score=29.76 Aligned_cols=108 Identities=17% Similarity=0.230 Sum_probs=59.9
Q ss_pred HHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCeeEEEEcCCCCCCCCC
Q psy7093 153 ITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDI 232 (322)
Q Consensus 153 ~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fDlIv~NPPy~~~~~~ 232 (322)
++.++.+..+..+|+|+|.++..++.|. ..|..... ..+. +. -..+|+||.--|
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~----~~g~~~~~---~~~~------~~------~~~~DlvvlavP------- 54 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAAL----ELGIIDEA---STDI------EA------VEDADLVVLAVP------- 54 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHH----HTTSSSEE---ESHH------HH------GGCCSEEEE-S--------
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHH----HCCCeeec---cCCH------hH------hcCCCEEEEcCC-------
Confidence 4566777766799999999999887775 33543211 1111 11 124587766322
Q ss_pred CCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEEEEcCCCHHHHHHHHHHcCCCCceeeEEEecCCCCC
Q psy7093 233 PKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNK 312 (322)
Q Consensus 233 ~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~e~~~~~~~~~~~~l~~~~~~~~~~~v~~~~D~~g~ 312 (322)
......++++...++++|+ +++.++......+..+.+... .+...+-.+. ++|.
T Consensus 55 ----------------------~~~~~~~l~~~~~~~~~~~-iv~Dv~SvK~~~~~~~~~~~~--~~~~~v~~HP-M~G~ 108 (258)
T PF02153_consen 55 ----------------------VSAIEDVLEEIAPYLKPGA-IVTDVGSVKAPIVEAMERLLP--EGVRFVGGHP-MAGP 108 (258)
T ss_dssp ----------------------HHHHHHHHHHHHCGS-TTS-EEEE--S-CHHHHHHHHHHHT--SSGEEEEEEE-SCST
T ss_pred ----------------------HHHHHHHHHHhhhhcCCCc-EEEEeCCCCHHHHHHHHHhcC--cccceeecCC-CCCC
Confidence 1225688888999888875 456788877766655544332 1345555553 4444
No 450
>KOG4174|consensus
Probab=75.15 E-value=20 Score=32.15 Aligned_cols=140 Identities=17% Similarity=0.136 Sum_probs=76.5
Q ss_pred CeEEEEcCchhHHHHHHHHhCC--CCEEEEEeCCHHHH------HHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc
Q psy7093 141 TRMIEIGSGTGAITISLLKHFP--KLKAIAIDQSKHAC------DLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL 212 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~--~~~v~~vDis~~al------~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~ 212 (322)
.+||.+|=|-=.++.+++..+. ...++++.++..-. .-|+.|+..+..-+-.-++..|++. +... ..+
T Consensus 58 ~~ill~gEgdFSfs~sl~~~~g~sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~I~h~Vdv~s---l~~~-~~~ 133 (282)
T KOG4174|consen 58 QKILLVGEGDFSFSLSLAPHFGRSAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGTILHGVDVTS---LKFH-ADL 133 (282)
T ss_pred ccEEEecccchhhHHHHHHHhCccccceeeeeccchhhhhhhcccchHHHHHHHHHcCCceEeccccee---EEec-ccc
Confidence 5799998888888899998875 23566665544431 2345565433211112233344411 0000 023
Q ss_pred CCCCeeEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCc-cCcEEEEEEc---CCCHHHHH
Q psy7093 213 LEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLK-PNGSIFLETN---HDHLDKIK 288 (322)
Q Consensus 213 ~~~~fDlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk-~gG~l~~e~~---~~~~~~~~ 288 (322)
..++||-||.|.|..-..-......... +-+ -.+.+.+++.+..+|+ ..|.+.+-+. +-....++
T Consensus 134 ~~~~~d~IiFNFPH~G~g~~~e~d~~~i--~~~---------qkL~rgFle~akemL~~edGeI~itlk~t~P~~~W~ik 202 (282)
T KOG4174|consen 134 RLQRYDNIIFNFPHSGKGIKFEQDRNII--PLH---------QKLFRGFLESAKEMLKDEDGEIHITLKTTYPFNPWNIK 202 (282)
T ss_pred cccccceEEEcCCCCCCCcccccchHHH--HHH---------HHHHHHHHHHHHHHHHhcCCcEEEEeccCCCCchhhhh
Confidence 4578999999998754432111111110 000 1346889999999999 8898877542 22233444
Q ss_pred HHHHHcC
Q psy7093 289 EWLGICG 295 (322)
Q Consensus 289 ~~l~~~~ 295 (322)
-+..+.|
T Consensus 203 ~Lak~~g 209 (282)
T KOG4174|consen 203 FLAKEFG 209 (282)
T ss_pred Hhhhhcc
Confidence 4444443
No 451
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=74.95 E-value=9 Score=35.19 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=46.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCee
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD 218 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~fD 218 (322)
++||=.| |+|.++..+++.+ .+.+|+++..++.............+...+++++.+|+.+....... -...|
T Consensus 6 k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~-----~~~~d 79 (325)
T PLN02989 6 KVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELA-----IDGCE 79 (325)
T ss_pred CEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHH-----HcCCC
Confidence 5676665 7888888888764 35688877766544332221111122234688999999543322221 12479
Q ss_pred EEEEcCCC
Q psy7093 219 LVVSNPPY 226 (322)
Q Consensus 219 lIv~NPPy 226 (322)
.||.+...
T Consensus 80 ~vih~A~~ 87 (325)
T PLN02989 80 TVFHTASP 87 (325)
T ss_pred EEEEeCCC
Confidence 99988653
No 452
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.84 E-value=23 Score=30.81 Aligned_cols=85 Identities=9% Similarity=0.018 Sum_probs=46.8
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEe-CCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAID-QSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vD-is~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~ 215 (322)
.++|=.| |+|.++..+++.+ .+.+++.+. .++.........+...+ .++.++..|+.+......+... ...+
T Consensus 7 ~~vlitG-asg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK06077 7 KVVVVTG-SGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENG--GEGIGVLADVSTREGCETLAKATIDRYG 83 (252)
T ss_pred cEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcC--CeeEEEEeccCCHHHHHHHHHHHHHHcC
Confidence 5777666 5677777777654 356776544 34444433333333332 3467788888543322211110 0124
Q ss_pred CeeEEEEcCCCCC
Q psy7093 216 KFDLVVSNPPYVP 228 (322)
Q Consensus 216 ~fDlIv~NPPy~~ 228 (322)
..|.||.|..+..
T Consensus 84 ~~d~vi~~ag~~~ 96 (252)
T PRK06077 84 VADILVNNAGLGL 96 (252)
T ss_pred CCCEEEECCCCCC
Confidence 6899999987543
No 453
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=74.47 E-value=14 Score=34.53 Aligned_cols=95 Identities=17% Similarity=0.238 Sum_probs=57.9
Q ss_pred CCeEEEEc--CchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 140 PTRMIEIG--SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 140 ~~~iLDlg--~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
+.+||=.| .|-|.+++.+|+.+.. .++++-.+++-.+.++ .++...-+.+...|+ .+.+........+
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~-~~v~~~~s~~k~~~~~----~lGAd~vi~y~~~~~-----~~~v~~~t~g~gv 212 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGA-TVVAVVSSSEKLELLK----ELGADHVINYREEDF-----VEQVRELTGGKGV 212 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCC-cEEEEecCHHHHHHHH----hcCCCEEEcCCcccH-----HHHHHHHcCCCCc
Confidence 47788887 4577999999999765 6666666665544443 445432233334444 3332221223469
Q ss_pred eEEEEcCCCCCCCCCCCCChhhhcccccccccCCCChhHHHHHHHHHHhccCccCcEEEE
Q psy7093 218 DLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277 (322)
Q Consensus 218 DlIv~NPPy~~~~~~~~l~~~v~~~ep~~al~~g~~gl~~~~~~l~~~~~~Lk~gG~l~~ 277 (322)
|+|+-- . | ...+..+.+.|+++|.++.
T Consensus 213 Dvv~D~-----v------------------------G----~~~~~~~l~~l~~~G~lv~ 239 (326)
T COG0604 213 DVVLDT-----V------------------------G----GDTFAASLAALAPGGRLVS 239 (326)
T ss_pred eEEEEC-----C------------------------C----HHHHHHHHHHhccCCEEEE
Confidence 999861 0 0 1455667888999998877
No 454
>PRK06398 aldose dehydrogenase; Validated
Probab=74.37 E-value=8.8 Score=34.06 Aligned_cols=74 Identities=19% Similarity=0.263 Sum_probs=44.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.++++.+ .+.+|+.++.++.. ..++.++.+|+.++...+.+.... ..+.
T Consensus 7 k~vlItG-as~gIG~~ia~~l~~~G~~Vi~~~r~~~~-------------~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~ 72 (258)
T PRK06398 7 KVAIVTG-GSQGIGKAVVNRLKEEGSNVINFDIKEPS-------------YNDVDYFKVDVSNKEQVIKGIDYVISKYGR 72 (258)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCccc-------------cCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 5677776 4566666666554 36799999876531 114788899995544332211100 1256
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.+|.|..+..
T Consensus 73 id~li~~Ag~~~ 84 (258)
T PRK06398 73 IDILVNNAGIES 84 (258)
T ss_pred CCEEEECCCCCC
Confidence 899999876543
No 455
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.15 E-value=12 Score=32.60 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=50.9
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|++++.++..+......+.. ..++.++.+|+.++.....+... ...++
T Consensus 6 ~~vlItG-asg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 81 (251)
T PRK07231 6 KVAIVTG-ASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVSDEADVEAAVAAALERFGS 81 (251)
T ss_pred cEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 4555554 5566666666543 257899999998776665554433 24588899998554433221100 01246
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
+|.||.|..+.
T Consensus 82 ~d~vi~~ag~~ 92 (251)
T PRK07231 82 VDILVNNAGTT 92 (251)
T ss_pred CCEEEECCCCC
Confidence 89999987653
No 456
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=74.08 E-value=29 Score=32.13 Aligned_cols=41 Identities=15% Similarity=0.073 Sum_probs=30.5
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+||=.|+| .|.+++.+|+.. +++|++++.+++.++.|++
T Consensus 166 g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 166 GGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALA 207 (329)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH
Confidence 4678877764 566677788875 5689999999887776653
No 457
>PRK07035 short chain dehydrogenase; Provisional
Probab=73.78 E-value=16 Score=32.04 Aligned_cols=84 Identities=14% Similarity=0.240 Sum_probs=50.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++.++++.+ .+.+|++++.++..++...+.+...+ .++.++..|+.+....+.+.... ..++
T Consensus 9 k~vlItGa-s~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 85 (252)
T PRK07035 9 KIALVTGA-SRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERHGR 85 (252)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45665554 455555555543 26799999999877766655554433 34777888885433222111000 1246
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|..+.
T Consensus 86 id~li~~ag~~ 96 (252)
T PRK07035 86 LDILVNNAAAN 96 (252)
T ss_pred CCEEEECCCcC
Confidence 89999988754
No 458
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=73.61 E-value=20 Score=32.44 Aligned_cols=94 Identities=15% Similarity=0.231 Sum_probs=61.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCC--CC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLE--QK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~--~~ 216 (322)
.++|=-| .|+.|+..+|+.+ .+.+++.+--+.+.++...+.+.... ...+.++..|+.++.....+...+.. ..
T Consensus 7 ~~~lITG-ASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~-~v~v~vi~~DLs~~~~~~~l~~~l~~~~~~ 84 (265)
T COG0300 7 KTALITG-ASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKT-GVEVEVIPADLSDPEALERLEDELKERGGP 84 (265)
T ss_pred cEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhh-CceEEEEECcCCChhHHHHHHHHHHhcCCc
Confidence 4555444 4555666666654 26799999999999988887776432 23488999998554433333221122 47
Q ss_pred eeEEEEcCCCCCCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLDIPKLE 236 (322)
Q Consensus 217 fDlIv~NPPy~~~~~~~~l~ 236 (322)
.|+.|.|--|.....+.+.+
T Consensus 85 IdvLVNNAG~g~~g~f~~~~ 104 (265)
T COG0300 85 IDVLVNNAGFGTFGPFLELS 104 (265)
T ss_pred ccEEEECCCcCCccchhhCC
Confidence 99999999888777555443
No 459
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=73.59 E-value=23 Score=32.38 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=31.0
Q ss_pred CCeEEEEc--CchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 140 PTRMIEIG--SGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg--~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+.+||=.| .|.|.+++.+|+.. +.+|++++.+++..+.++
T Consensus 139 g~~VLI~ga~g~vG~~aiqlAk~~-G~~Vi~~~~s~~~~~~~~ 180 (325)
T TIGR02825 139 GETVMVNAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKVAYLK 180 (325)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHH
Confidence 36787777 45788888899885 568999999988776664
No 460
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=73.54 E-value=12 Score=37.74 Aligned_cols=79 Identities=10% Similarity=0.151 Sum_probs=49.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCC-------CCcEEEEEccCCCcccccccCcC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNV-------ANQLQVFHAEIDSKGQVKNLQPD 211 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l-------~~~i~~~~~D~~~~~~~~~l~~~ 211 (322)
++|| |..|+|.++..+++.+ .+.+|++++.+...+.....++...++ ..++.++.+|+.+.+.+..
T Consensus 81 KvVL-VTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~---- 155 (576)
T PLN03209 81 DLAF-VAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP---- 155 (576)
T ss_pred CEEE-EECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH----
Confidence 4555 4556777887777654 367899999988776554444332211 1358899999954332221
Q ss_pred cCCCCeeEEEEcCC
Q psy7093 212 LLEQKFDLVVSNPP 225 (322)
Q Consensus 212 ~~~~~fDlIv~NPP 225 (322)
.-+..|+||+|..
T Consensus 156 -aLggiDiVVn~AG 168 (576)
T PLN03209 156 -ALGNASVVICCIG 168 (576)
T ss_pred -HhcCCCEEEEccc
Confidence 1246899999854
No 461
>PRK05866 short chain dehydrogenase; Provisional
Probab=73.36 E-value=10 Score=34.55 Aligned_cols=84 Identities=13% Similarity=0.218 Sum_probs=51.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++..+++.+ .+.+|+.++.+.+.++...+.+...+ .++.++..|+.++.....+.... ..+.
T Consensus 41 k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~ 117 (293)
T PRK05866 41 KRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG--GDAMAVPCDLSDLDAVDALVADVEKRIGG 117 (293)
T ss_pred CEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 56766654 556666666543 36799999999887766655554433 34788899985543322211100 1247
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|.-..
T Consensus 118 id~li~~AG~~ 128 (293)
T PRK05866 118 VDILINNAGRS 128 (293)
T ss_pred CCEEEECCCCC
Confidence 89999987543
No 462
>PLN02780 ketoreductase/ oxidoreductase
Probab=73.35 E-value=14 Score=34.31 Aligned_cols=86 Identities=9% Similarity=0.137 Sum_probs=48.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc--ccccccCcCcCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK--GQVKNLQPDLLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~--~~~~~l~~~~~~~~ 216 (322)
..+|=.|+ ||.++.++++.+ .+.+|+.++.+++.++...+.+....-..++..+..|+.+. ...+.+...+....
T Consensus 54 ~~~lITGA-s~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~d 132 (320)
T PLN02780 54 SWALVTGP-TDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGLD 132 (320)
T ss_pred CEEEEeCC-CcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCCC
Confidence 56776664 555555555543 36789999999998877766664432122467777887320 00111111111223
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|++|.|..+.
T Consensus 133 idilVnnAG~~ 143 (320)
T PLN02780 133 VGVLINNVGVS 143 (320)
T ss_pred ccEEEEecCcC
Confidence 56899987653
No 463
>PRK07774 short chain dehydrogenase; Provisional
Probab=73.26 E-value=13 Score=32.38 Aligned_cols=84 Identities=12% Similarity=0.172 Sum_probs=51.0
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.++.........+... ..++.++..|+.+......+.... ..++
T Consensus 7 k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK07774 7 KVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--GGTAIAVQVDVSDPDSAKAMADATVSAFGG 83 (250)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 5666555 6677777777654 3679999999887665554444332 234777889985433221111000 1246
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|+||.|..+.
T Consensus 84 id~vi~~ag~~ 94 (250)
T PRK07774 84 IDYLVNNAAIY 94 (250)
T ss_pred CCEEEECCCCc
Confidence 89999988764
No 464
>PRK05599 hypothetical protein; Provisional
Probab=73.21 E-value=15 Score=32.39 Aligned_cols=83 Identities=12% Similarity=0.134 Sum_probs=51.2
Q ss_pred EEEEcCchhHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCCeeE
Q psy7093 143 MIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQKFDL 219 (322)
Q Consensus 143 iLDlg~GsG~~~~~la~~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~fDl 219 (322)
+|=.|+ ++.++.++++.+ .+.+|+.++.+++.++.+.+.++..+ .+++.++..|+.+....+.+.... ..++.|+
T Consensus 3 vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~-~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id~ 80 (246)
T PRK05599 3 ILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRG-ATSVHVLSFDAQDLDTHRELVKQTQELAGEISL 80 (246)
T ss_pred EEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcc-CCceEEEEcccCCHHHHHHHHHHHHHhcCCCCE
Confidence 554555 445555555533 36789999998888876666665444 234778899986544333221111 1367899
Q ss_pred EEEcCCCC
Q psy7093 220 VVSNPPYV 227 (322)
Q Consensus 220 Iv~NPPy~ 227 (322)
+|.|.-+.
T Consensus 81 lv~nag~~ 88 (246)
T PRK05599 81 AVVAFGIL 88 (246)
T ss_pred EEEecCcC
Confidence 99997654
No 465
>PLN02740 Alcohol dehydrogenase-like
Probab=73.14 E-value=16 Score=34.52 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=30.9
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+||=.|+| .|..++.+|+.++..+|+++|.+++.++.+++
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 3677777765 45666777887654479999999988887753
No 466
>PRK06179 short chain dehydrogenase; Provisional
Probab=73.13 E-value=7.6 Score=34.52 Aligned_cols=80 Identities=8% Similarity=0.132 Sum_probs=49.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+.++=.| |+|.++..+++.+ .+.+|++++.++..... ..+++++.+|+.++...+.+-.. ...++
T Consensus 5 ~~vlVtG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~----------~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~ 73 (270)
T PRK06179 5 KVALVTG-ASSGIGRATAEKLARAGYRVFGTSRNPARAAP----------IPGVELLELDVTDDASVQAAVDEVIARAGR 73 (270)
T ss_pred CEEEEec-CCCHHHHHHHHHHHHCCCEEEEEeCChhhccc----------cCCCeeEEeecCCHHHHHHHHHHHHHhCCC
Confidence 4566666 5677777777653 36789999988654321 12478889999654433222110 01357
Q ss_pred eeEEEEcCCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSLD 231 (322)
Q Consensus 217 fDlIv~NPPy~~~~~ 231 (322)
.|++|.|..+.....
T Consensus 74 ~d~li~~ag~~~~~~ 88 (270)
T PRK06179 74 IDVLVNNAGVGLAGA 88 (270)
T ss_pred CCEEEECCCCCCCcC
Confidence 899999987654433
No 467
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=73.12 E-value=13 Score=33.31 Aligned_cols=84 Identities=11% Similarity=0.163 Sum_probs=50.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++.+++..+ .+.+|+.++.+++..+...+.+...+ .++.++.+|+.++.....+.... ..++
T Consensus 11 k~vlVtG-as~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 87 (278)
T PRK08277 11 KVAVITG-GGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAG--GEALAVKADVLDKESLEQARQQILEDFGP 87 (278)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 5566555 4455666555543 36799999998877665555444332 35888999985443222211100 1257
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
+|++|.|..+.
T Consensus 88 id~li~~ag~~ 98 (278)
T PRK08277 88 CDILINGAGGN 98 (278)
T ss_pred CCEEEECCCCC
Confidence 89999997643
No 468
>PRK12743 oxidoreductase; Provisional
Probab=73.08 E-value=22 Score=31.26 Aligned_cols=85 Identities=9% Similarity=0.030 Sum_probs=50.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEe-CCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAID-QSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vD-is~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~ 215 (322)
+++|=.|+ +|.++..+++.+ .+.+|+.+. .+...++.+...++..+ .++.++..|+.+....+.+... -..+
T Consensus 3 k~vlItGa-s~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK12743 3 QVAIVTAS-DSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRLG 79 (256)
T ss_pred CEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46776774 566777777654 357887764 45555555544444443 3588899998543322221110 0125
Q ss_pred CeeEEEEcCCCCC
Q psy7093 216 KFDLVVSNPPYVP 228 (322)
Q Consensus 216 ~fDlIv~NPPy~~ 228 (322)
+.|.+|.|.-+..
T Consensus 80 ~id~li~~ag~~~ 92 (256)
T PRK12743 80 RIDVLVNNAGAMT 92 (256)
T ss_pred CCCEEEECCCCCC
Confidence 7899999986654
No 469
>PRK12829 short chain dehydrogenase; Provisional
Probab=72.94 E-value=15 Score=32.31 Aligned_cols=82 Identities=17% Similarity=0.197 Sum_probs=49.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++..+++.+ .+.+|++++.++..++....... +. ++.++..|+.++.......... ..++
T Consensus 12 ~~vlItGa-~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~--~~--~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 86 (264)
T PRK12829 12 LRVLVTGG-ASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP--GA--KVTATVADVADPAQVERVFDTAVERFGG 86 (264)
T ss_pred CEEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--cC--ceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 67886665 566666666553 25789999998776554433221 11 4788899985543322111000 1246
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
+|.||.|....
T Consensus 87 ~d~vi~~ag~~ 97 (264)
T PRK12829 87 LDVLVNNAGIA 97 (264)
T ss_pred CCEEEECCCCC
Confidence 89999987655
No 470
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=72.92 E-value=13 Score=38.01 Aligned_cols=27 Identities=33% Similarity=0.511 Sum_probs=23.2
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEE
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAI 167 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~ 167 (322)
.-.|-.|-|||.++..+++.+|.++++
T Consensus 324 ~d~l~~GDGSGGita~lLR~~p~sr~i 350 (675)
T PF14314_consen 324 RDALCGGDGSGGITACLLRMNPTSRGI 350 (675)
T ss_pred ceeEEEecCchHHHHHHHHhCccccee
Confidence 567889999999999999999887655
No 471
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.46 E-value=21 Score=31.44 Aligned_cols=88 Identities=9% Similarity=0.097 Sum_probs=47.6
Q ss_pred CeEEEEcCch-hHHHHHHHHhC--CCCEEEEEeCC-----------HHHHHHHHHHHHHcCCCCcEEEEEccCCCccccc
Q psy7093 141 TRMIEIGSGT-GAITISLLKHF--PKLKAIAIDQS-----------KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVK 206 (322)
Q Consensus 141 ~~iLDlg~Gs-G~~~~~la~~~--~~~~v~~vDis-----------~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~ 206 (322)
+++|=.|++. |.++..+++.+ .+.+|+.++.+ ........+.+...+ .++.++..|+.+.....
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~i~ 84 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNG--VKVSSMELDLTQNDAPK 84 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHH
Confidence 6788888753 45555555543 35678776432 122222333444444 35888899985443222
Q ss_pred ccCcCc--CCCCeeEEEEcCCCCCCC
Q psy7093 207 NLQPDL--LEQKFDLVVSNPPYVPSL 230 (322)
Q Consensus 207 ~l~~~~--~~~~fDlIv~NPPy~~~~ 230 (322)
.+-... ..+..|.+|.|+.+....
T Consensus 85 ~~~~~~~~~~g~id~li~~ag~~~~~ 110 (256)
T PRK12859 85 ELLNKVTEQLGYPHILVNNAAYSTNN 110 (256)
T ss_pred HHHHHHHHHcCCCcEEEECCCCCCCC
Confidence 211100 124689999998765433
No 472
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=72.40 E-value=17 Score=33.79 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=31.7
Q ss_pred CCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 140 PTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+.+|+=.|+|+ |..++.+|+.. +.+|+++|.+++.++.++
T Consensus 167 g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~ 207 (349)
T TIGR03201 167 GDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMK 207 (349)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHH
Confidence 46888888864 77778888886 458999999998887775
No 473
>PRK07478 short chain dehydrogenase; Provisional
Probab=72.37 E-value=12 Score=32.80 Aligned_cols=84 Identities=12% Similarity=0.077 Sum_probs=52.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=. .|+|.++..+++.+ .+.+|+.++.+++.++.+...+...+ .++.++..|+.++.....+.... ..++
T Consensus 7 k~~lIt-Gas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 83 (254)
T PRK07478 7 KVAIIT-GASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVRDEAYAKALVALAVERFGG 83 (254)
T ss_pred CEEEEe-CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 456644 45566666666644 26799999999887776666555444 35888899985543222211100 1257
Q ss_pred eeEEEEcCCCC
Q psy7093 217 FDLVVSNPPYV 227 (322)
Q Consensus 217 fDlIv~NPPy~ 227 (322)
.|.+|.|....
T Consensus 84 id~li~~ag~~ 94 (254)
T PRK07478 84 LDIAFNNAGTL 94 (254)
T ss_pred CCEEEECCCCC
Confidence 89999998654
No 474
>PRK06720 hypothetical protein; Provisional
Probab=72.04 E-value=25 Score=29.38 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=49.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+.++-.|.+ |.++..++..+ .+.+|+.+|.+...++.+...+...+ .++.++..|+.+......+... ...++
T Consensus 17 k~~lVTGa~-~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~ 93 (169)
T PRK06720 17 KVAIVTGGG-IGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG--GEALFVSYDMEKQGDWQRVISITLNAFSR 93 (169)
T ss_pred CEEEEecCC-ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 456655554 44444444432 36889999998887765555554333 3467788898544332221110 01357
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|++|.|.....
T Consensus 94 iDilVnnAG~~~ 105 (169)
T PRK06720 94 IDMLFQNAGLYK 105 (169)
T ss_pred CCEEEECCCcCC
Confidence 899999976443
No 475
>PRK12742 oxidoreductase; Provisional
Probab=71.72 E-value=29 Score=29.87 Aligned_cols=78 Identities=14% Similarity=0.226 Sum_probs=41.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeC-CHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQ-SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDi-s~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
++||=.| |+|.++..+++.+ .+.+|+.+.. +++.++... ...+ +.++..|+.+......... ..+++
T Consensus 7 k~vlItG-asggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~---~~~~----~~~~~~D~~~~~~~~~~~~--~~~~i 76 (237)
T PRK12742 7 KKVLVLG-GSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLA---QETG----ATAVQTDSADRDAVIDVVR--KSGAL 76 (237)
T ss_pred CEEEEEC-CCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHH---HHhC----CeEEecCCCCHHHHHHHHH--HhCCC
Confidence 5677555 4666666666543 2567877654 344333221 1222 4567788744322211111 12568
Q ss_pred eEEEEcCCCCC
Q psy7093 218 DLVVSNPPYVP 228 (322)
Q Consensus 218 DlIv~NPPy~~ 228 (322)
|++|.|..+..
T Consensus 77 d~li~~ag~~~ 87 (237)
T PRK12742 77 DILVVNAGIAV 87 (237)
T ss_pred cEEEECCCCCC
Confidence 99999976644
No 476
>PRK08264 short chain dehydrogenase; Validated
Probab=71.72 E-value=16 Score=31.57 Aligned_cols=74 Identities=9% Similarity=0.170 Sum_probs=46.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~-~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
+++|=.| |+|.++..+++.+ .+. +|+.++.++..+.. ...++.++.+|+.++.....+.. ..+..
T Consensus 7 ~~vlItG-gsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~--~~~~i 74 (238)
T PRK08264 7 KVVLVTG-ANRGIGRAFVEQLLARGAAKVYAAARDPESVTD---------LGPRVVPLQLDVTDPASVAAAAE--AASDV 74 (238)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCcccEEEEecChhhhhh---------cCCceEEEEecCCCHHHHHHHHH--hcCCC
Confidence 5677666 5777777766643 255 89999988764332 12458889999855433222211 12458
Q ss_pred eEEEEcCCC
Q psy7093 218 DLVVSNPPY 226 (322)
Q Consensus 218 DlIv~NPPy 226 (322)
|+||.|...
T Consensus 75 d~vi~~ag~ 83 (238)
T PRK08264 75 TILVNNAGI 83 (238)
T ss_pred CEEEECCCc
Confidence 999998765
No 477
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=71.66 E-value=14 Score=32.27 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=51.4
Q ss_pred EEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCCee
Q psy7093 143 MIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQKFD 218 (322)
Q Consensus 143 iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~fD 218 (322)
+|=.| |+|.++..+++.+ .+.+|+.++.++..++.....+...+ .++.++..|+.++.....+-... ..++.|
T Consensus 3 ~lItG-~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id 79 (254)
T TIGR02415 3 ALVTG-GAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAG--GKAVAYKLDVSDKDQVFSAIDQAAEKFGGFD 79 (254)
T ss_pred EEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHcCCCC
Confidence 44444 4677777666543 36789999988776655544444333 35888899985544322211000 124679
Q ss_pred EEEEcCCCCCCCC
Q psy7093 219 LVVSNPPYVPSLD 231 (322)
Q Consensus 219 lIv~NPPy~~~~~ 231 (322)
.+|.|........
T Consensus 80 ~vi~~ag~~~~~~ 92 (254)
T TIGR02415 80 VMVNNAGVAPITP 92 (254)
T ss_pred EEEECCCcCCCCC
Confidence 9999987655433
No 478
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=71.56 E-value=28 Score=31.92 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=30.9
Q ss_pred CCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 140 PTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+.+||-.|+|. |..++.+|+..+..++++++.++...+.++
T Consensus 166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~ 207 (339)
T cd08232 166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR 207 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 36787788776 778888888864337999999888776554
No 479
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=71.45 E-value=21 Score=31.47 Aligned_cols=84 Identities=11% Similarity=0.124 Sum_probs=47.6
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+ +|.++..+++.+ .+.+|+.++.+. ..+.+.+.....+ .++.++.+|+.+......+.... ..+.
T Consensus 16 k~vlItGa-s~gIG~~ia~~l~~~G~~v~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~g~ 91 (258)
T PRK06935 16 KVAIVTGG-NTGLGQGYAVALAKAGADIIITTHGT-NWDETRRLIEKEG--RKVTFVQVDLTKPESAEKVVKEALEEFGK 91 (258)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCc-HHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 56766665 455555555443 367888888773 3333333333333 35888999985543222211100 1246
Q ss_pred eeEEEEcCCCCC
Q psy7093 217 FDLVVSNPPYVP 228 (322)
Q Consensus 217 fDlIv~NPPy~~ 228 (322)
.|.+|.|..+..
T Consensus 92 id~li~~ag~~~ 103 (258)
T PRK06935 92 IDILVNNAGTIR 103 (258)
T ss_pred CCEEEECCCCCC
Confidence 899999987654
No 480
>PRK05693 short chain dehydrogenase; Provisional
Probab=71.23 E-value=16 Score=32.65 Aligned_cols=79 Identities=13% Similarity=0.228 Sum_probs=45.9
Q ss_pred eEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCCe
Q psy7093 142 RMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQKF 217 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~f 217 (322)
++|=.| |+|.++..+++.+ .+.+|++++.++..++... .. .+.++..|+.+......+.... ..++.
T Consensus 3 ~vlItG-asggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~----~~----~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 73 (274)
T PRK05693 3 VVLITG-CSSGIGRALADAFKAAGYEVWATARKAEDVEALA----AA----GFTAVQLDVNDGAALARLAEELEAEHGGL 73 (274)
T ss_pred EEEEec-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH----HC----CCeEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 455444 5666666666543 3679999999877654332 11 2567788884433222111100 12578
Q ss_pred eEEEEcCCCCCC
Q psy7093 218 DLVVSNPPYVPS 229 (322)
Q Consensus 218 DlIv~NPPy~~~ 229 (322)
|+||.|.-+...
T Consensus 74 d~vi~~ag~~~~ 85 (274)
T PRK05693 74 DVLINNAGYGAM 85 (274)
T ss_pred CEEEECCCCCCC
Confidence 999999876543
No 481
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=71.10 E-value=26 Score=30.18 Aligned_cols=86 Identities=13% Similarity=0.189 Sum_probs=52.4
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++||=.| |+|.++..+++.+ .+.+|++++.++...+.....+...+ .++.++.+|+.++.......... ..++
T Consensus 6 ~~ilItG-asg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 82 (246)
T PRK05653 6 KTALVTG-ASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAG--GEARVLVFDVSDEAAVRALIEAAVEAFGA 82 (246)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 5677555 5788887777654 25679999998876655444444333 35888889985443222111000 1246
Q ss_pred eeEEEEcCCCCCC
Q psy7093 217 FDLVVSNPPYVPS 229 (322)
Q Consensus 217 fDlIv~NPPy~~~ 229 (322)
.|.|+.+..+...
T Consensus 83 id~vi~~ag~~~~ 95 (246)
T PRK05653 83 LDILVNNAGITRD 95 (246)
T ss_pred CCEEEECCCcCCC
Confidence 7999998766544
No 482
>PRK07024 short chain dehydrogenase; Provisional
Probab=71.09 E-value=12 Score=33.11 Aligned_cols=82 Identities=12% Similarity=0.187 Sum_probs=49.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |+|.++..+++.+ .+.+|+.++.+++.++...+.+... .++.++.+|+++........... ..++
T Consensus 3 ~~vlItG-as~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 3 LKVFITG-ASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKA---ARVSVYAADVRDADALAAAAADFIAAHGL 78 (257)
T ss_pred CEEEEEc-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccC---CeeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 4555555 4667777766654 3679999999887765544333211 25889999996544322211100 1246
Q ss_pred eeEEEEcCCC
Q psy7093 217 FDLVVSNPPY 226 (322)
Q Consensus 217 fDlIv~NPPy 226 (322)
.|++|.|.-.
T Consensus 79 id~lv~~ag~ 88 (257)
T PRK07024 79 PDVVIANAGI 88 (257)
T ss_pred CCEEEECCCc
Confidence 8999998653
No 483
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=71.03 E-value=42 Score=29.73 Aligned_cols=42 Identities=21% Similarity=0.330 Sum_probs=30.5
Q ss_pred CCeEEEEcCch-hHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIGSGT-GAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg~Gs-G~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.++|=.|+|. |..++.+|+..+..+|++++.+++..+.+++
T Consensus 98 g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 98 GERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA 140 (277)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH
Confidence 36777778765 7777888888643339999999887776653
No 484
>KOG1209|consensus
Probab=70.99 E-value=9.2 Score=33.59 Aligned_cols=81 Identities=19% Similarity=0.284 Sum_probs=51.8
Q ss_pred CCeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHH-HHHHHHHHHHHcCCCCcEEEEEccCCCcccccccC---cCcC
Q psy7093 140 PTRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKH-ACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ---PDLL 213 (322)
Q Consensus 140 ~~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~-al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~---~~~~ 213 (322)
++.||=.||.+|.|+-++++++ .+..|+++-.+-+ +..++. ..+ +.....|+.+++...... ...+
T Consensus 7 ~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~----~~g----l~~~kLDV~~~~~V~~v~~evr~~~ 78 (289)
T KOG1209|consen 7 PKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAI----QFG----LKPYKLDVSKPEEVVTVSGEVRANP 78 (289)
T ss_pred CCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHH----hhC----CeeEEeccCChHHHHHHHHHHhhCC
Confidence 4789999999999999999976 4578888765433 223322 223 566777774443221111 1236
Q ss_pred CCCeeEEEEcCCCCC
Q psy7093 214 EQKFDLVVSNPPYVP 228 (322)
Q Consensus 214 ~~~fDlIv~NPPy~~ 228 (322)
.++.|+.+.|.--.+
T Consensus 79 ~Gkld~L~NNAG~~C 93 (289)
T KOG1209|consen 79 DGKLDLLYNNAGQSC 93 (289)
T ss_pred CCceEEEEcCCCCCc
Confidence 789999999864433
No 485
>PRK09135 pteridine reductase; Provisional
Probab=70.83 E-value=42 Score=28.98 Aligned_cols=85 Identities=9% Similarity=0.102 Sum_probs=48.3
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQS-KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis-~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~ 215 (322)
.+||=.|+ +|.++..+++.+ .+.+|++++.+ +...+.....+.... ...+.++.+|+.+......+.... ..+
T Consensus 7 ~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (249)
T PRK09135 7 KVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALR-PGSAAALQADLLDPDALPELVAACVAAFG 84 (249)
T ss_pred CEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-CCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56887774 677777766654 36799999975 333333333332222 234788999985433222211000 124
Q ss_pred CeeEEEEcCCCC
Q psy7093 216 KFDLVVSNPPYV 227 (322)
Q Consensus 216 ~fDlIv~NPPy~ 227 (322)
..|.|+.|....
T Consensus 85 ~~d~vi~~ag~~ 96 (249)
T PRK09135 85 RLDALVNNASSF 96 (249)
T ss_pred CCCEEEECCCCC
Confidence 679999987643
No 486
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=70.77 E-value=30 Score=32.18 Aligned_cols=40 Identities=23% Similarity=0.496 Sum_probs=29.1
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeC---CHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQ---SKHACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDi---s~~al~~A~ 180 (322)
+.+||=.|+| .|.+++.+|+.. +.+|++++. ++..++.++
T Consensus 173 g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~ 216 (355)
T cd08230 173 PRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVE 216 (355)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHH
Confidence 3678877876 467778888886 458999987 666666654
No 487
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=70.35 E-value=23 Score=32.26 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=31.0
Q ss_pred CCeEEEEc--CchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHH
Q psy7093 140 PTRMIEIG--SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181 (322)
Q Consensus 140 ~~~iLDlg--~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~ 181 (322)
+.+||=.| .|.|.+++.+|+.. +.+|++++.+++..+.++.
T Consensus 144 g~~vlI~ga~g~vG~~aiqlA~~~-G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 144 GETVVVNGAAGAVGSLVGQIAKIK-GCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH
Confidence 35676666 56788888899886 5689999998887766653
No 488
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=70.35 E-value=13 Score=35.54 Aligned_cols=75 Identities=20% Similarity=0.397 Sum_probs=46.2
Q ss_pred CeEEEEcCchhHHHHHHHHh---CCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCcCCCCe
Q psy7093 141 TRMIEIGSGTGAITISLLKH---FPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~---~~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~~~~~f 217 (322)
.+||=+|| |.++..+|.. ....+|+..|.|.+.++.+..+.. .+++..+.|+.+...+..+ -..+
T Consensus 2 ~~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~-----~~v~~~~vD~~d~~al~~l-----i~~~ 69 (389)
T COG1748 2 MKILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG-----GKVEALQVDAADVDALVAL-----IKDF 69 (389)
T ss_pred CcEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc-----ccceeEEecccChHHHHHH-----HhcC
Confidence 46888998 4444444433 344799999999887777655432 2688899998432221111 1245
Q ss_pred eEEEEc-CCCC
Q psy7093 218 DLVVSN-PPYV 227 (322)
Q Consensus 218 DlIv~N-PPy~ 227 (322)
|+||+- |||+
T Consensus 70 d~VIn~~p~~~ 80 (389)
T COG1748 70 DLVINAAPPFV 80 (389)
T ss_pred CEEEEeCCchh
Confidence 888774 5544
No 489
>PRK08263 short chain dehydrogenase; Provisional
Probab=70.07 E-value=15 Score=32.86 Aligned_cols=84 Identities=11% Similarity=0.059 Sum_probs=50.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
++||=.| |+|.++..+++.+ .+.+|++++.++..++...... .+++.++..|+.++.......... ..+.
T Consensus 4 k~vlItG-asg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 77 (275)
T PRK08263 4 KVWFITG-ASRGFGRAWTEAALERGDRVVATARDTATLADLAEKY-----GDRLLPLALDVTDRAAVFAAVETAVEHFGR 77 (275)
T ss_pred CEEEEeC-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc-----cCCeeEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4566655 5777777777654 3678999999887665443221 235778889985544322211100 1246
Q ss_pred eeEEEEcCCCCCCC
Q psy7093 217 FDLVVSNPPYVPSL 230 (322)
Q Consensus 217 fDlIv~NPPy~~~~ 230 (322)
+|.||.|.-+....
T Consensus 78 ~d~vi~~ag~~~~~ 91 (275)
T PRK08263 78 LDIVVNNAGYGLFG 91 (275)
T ss_pred CCEEEECCCCcccc
Confidence 89999998665433
No 490
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=69.92 E-value=11 Score=36.04 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=31.6
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHH
Q psy7093 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~~~~~v~~vDis~~al~~A~~n~ 183 (322)
.+||-| |++||-++.++..-| .+|++||+||.-+.+.+-..
T Consensus 37 d~vl~I-tSaG~N~L~yL~~~P-~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 37 DRVLTI-TSAGCNALDYLLAGP-KRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred CeEEEE-ccCCchHHHHHhcCC-ceEEEEeCCHHHHHHHHHHH
Confidence 789999 667777777776644 79999999998877665443
No 491
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=69.89 E-value=16 Score=31.80 Aligned_cols=83 Identities=10% Similarity=0.173 Sum_probs=50.3
Q ss_pred eEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCCe
Q psy7093 142 RMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQKF 217 (322)
Q Consensus 142 ~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~f 217 (322)
++|=.| |+|.++..+++.+ .+.+|++++.++...+.........+ .++.++.+|+.+......+.... ..+..
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 444444 6777777777654 35689999998876655554443332 45888999995543221110000 12458
Q ss_pred eEEEEcCCCC
Q psy7093 218 DLVVSNPPYV 227 (322)
Q Consensus 218 DlIv~NPPy~ 227 (322)
|.||.|.-+.
T Consensus 80 d~vi~~a~~~ 89 (255)
T TIGR01963 80 DILVNNAGIQ 89 (255)
T ss_pred CEEEECCCCC
Confidence 9999987554
No 492
>PRK08703 short chain dehydrogenase; Provisional
Probab=69.66 E-value=17 Score=31.56 Aligned_cols=84 Identities=11% Similarity=0.173 Sum_probs=48.7
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCc--ccccccCcCc---C
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK--GQVKNLQPDL---L 213 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~--~~~~~l~~~~---~ 213 (322)
++++=.| |+|.++..+++.+ .+.+|++++.++..++.....+...+- ..+.++..|+.+. ..+..+.... .
T Consensus 7 k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~i~~~~ 84 (239)
T PRK08703 7 KTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGH-PEPFAIRFDLMSAEEKEFEQFAATIAEAT 84 (239)
T ss_pred CEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCC-CCcceEEeeecccchHHHHHHHHHHHHHh
Confidence 5777777 5666666666544 367899999998877666555544332 2356677776321 0011100000 1
Q ss_pred CCCeeEEEEcCCC
Q psy7093 214 EQKFDLVVSNPPY 226 (322)
Q Consensus 214 ~~~fDlIv~NPPy 226 (322)
.+..|.||.|.-.
T Consensus 85 ~~~id~vi~~ag~ 97 (239)
T PRK08703 85 QGKLDGIVHCAGY 97 (239)
T ss_pred CCCCCEEEEeccc
Confidence 1468999988754
No 493
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=69.59 E-value=24 Score=32.96 Aligned_cols=40 Identities=15% Similarity=0.133 Sum_probs=31.1
Q ss_pred CCeEEEEcC--chhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 140 PTRMIEIGS--GTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg~--GsG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+.+||=.|+ |.|.+++.+|+.. +.+|++++.+++-.+.++
T Consensus 159 g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 159 GDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred CCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHH
Confidence 467877776 5788888899886 578999999887766654
No 494
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=69.59 E-value=1.1e+02 Score=29.48 Aligned_cols=67 Identities=10% Similarity=0.050 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHhccCccCcEEEE--EEcCCCHHHHHHHHHHcCCCCcee---------eEEEecCCCCCCeEEEEEEc
Q psy7093 255 LNIIKPICVFGSNYLKPNGSIFL--ETNHDHLDKIKEWLGICGHHMKLK---------LVENYKDFNNKDRFVELKLV 321 (322)
Q Consensus 255 l~~~~~~l~~~~~~Lk~gG~l~~--e~~~~~~~~~~~~l~~~~~~~~~~---------~v~~~~D~~g~~R~~~~~~~ 321 (322)
+...+..++.....++..-.++. .+..+..+.+++.+........|. .=.-.+|...-+|+|+..+.
T Consensus 96 l~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~Av~D~~~PdRIViG~~~ 173 (414)
T COG1004 96 LSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSAVYDFLYPDRIVIGVRS 173 (414)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcchhhhccCCCeEEEccCC
Confidence 45567888888888877644433 135677788888776654111121 11345788999999987653
No 495
>PLN02827 Alcohol dehydrogenase-like
Probab=69.36 E-value=20 Score=33.97 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=29.7
Q ss_pred CCeEEEEcCc-hhHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Q psy7093 140 PTRMIEIGSG-TGAITISLLKHFPKLKAIAIDQSKHACDLTE 180 (322)
Q Consensus 140 ~~~iLDlg~G-sG~~~~~la~~~~~~~v~~vDis~~al~~A~ 180 (322)
+.+||=.|+| .|.+++.+|+......|+++|.++...+.|+
T Consensus 194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~ 235 (378)
T PLN02827 194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAK 235 (378)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 4678777764 4566677788765446999999988777664
No 496
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=69.26 E-value=7.3 Score=35.17 Aligned_cols=35 Identities=17% Similarity=0.426 Sum_probs=30.1
Q ss_pred CeEEEEcCchhHHHHHHHHhC-----CCCEEEEEeCCHHH
Q psy7093 141 TRMIEIGSGTGAITISLLKHF-----PKLKAIAIDQSKHA 175 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~-----~~~~v~~vDis~~a 175 (322)
..++|+|||.|.++..++..+ +...++.||....-
T Consensus 20 ~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R 59 (259)
T PF05206_consen 20 SCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNR 59 (259)
T ss_pred CEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccc
Confidence 689999999999999999987 55789999986533
No 497
>PRK07825 short chain dehydrogenase; Provisional
Probab=69.19 E-value=17 Score=32.25 Aligned_cols=82 Identities=11% Similarity=0.093 Sum_probs=49.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.| |||.++..+++.+ .+.+|+.++.+++.++...... + ++.++..|+.++.....+.... ..+.
T Consensus 6 ~~ilVtG-asggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~---~---~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 78 (273)
T PRK07825 6 KVVAITG-GARGIGLATARALAALGARVAIGDLDEALAKETAAEL---G---LVVGGPLDVTDPASFAAFLDAVEADLGP 78 (273)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh---c---cceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4666555 4566666666543 3678999999887765443332 1 3778889985544322211100 1256
Q ss_pred eeEEEEcCCCCCC
Q psy7093 217 FDLVVSNPPYVPS 229 (322)
Q Consensus 217 fDlIv~NPPy~~~ 229 (322)
.|++|.|.-....
T Consensus 79 id~li~~ag~~~~ 91 (273)
T PRK07825 79 IDVLVNNAGVMPV 91 (273)
T ss_pred CCEEEECCCcCCC
Confidence 8999999765543
No 498
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=69.15 E-value=23 Score=30.59 Aligned_cols=86 Identities=13% Similarity=0.129 Sum_probs=49.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEEccCCCcccccccCcC--cCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMH-NVANQLQVFHAEIDSKGQVKNLQPD--LLEQ 215 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~-~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~ 215 (322)
+++|=.| |+|.++..+++.+ .+.+|++++.++. +.++...... ....++.++..|+.+.......... ...+
T Consensus 3 k~vlItG-~s~~iG~~la~~l~~~g~~vi~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~ 79 (245)
T PRK12824 3 KIALVTG-AKRGIGSAIARELLNDGYRVIATYFSGN--DCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEG 79 (245)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCcH--HHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 3555555 6777777777654 2578999998754 2222222211 1234588999998543322111100 0125
Q ss_pred CeeEEEEcCCCCCC
Q psy7093 216 KFDLVVSNPPYVPS 229 (322)
Q Consensus 216 ~fDlIv~NPPy~~~ 229 (322)
++|.+|.|.-+...
T Consensus 80 ~id~vi~~ag~~~~ 93 (245)
T PRK12824 80 PVDILVNNAGITRD 93 (245)
T ss_pred CCCEEEECCCCCCC
Confidence 68999999877543
No 499
>PRK06484 short chain dehydrogenase; Validated
Probab=69.07 E-value=20 Score=35.32 Aligned_cols=80 Identities=11% Similarity=0.182 Sum_probs=48.2
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcCc--CCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL--LEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~~--~~~~ 216 (322)
+++|=.|+++ .++..+++.+ .+.+|+.++.+.+.++.+...+ + .++.++..|+.++.....+.... ..++
T Consensus 6 k~~lITGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 79 (520)
T PRK06484 6 RVVLVTGAAG-GIGRAACQRFARAGDQVVVADRNVERARERADSL---G--PDHHALAMDVSDEAQIREGFEQLHREFGR 79 (520)
T ss_pred eEEEEECCCc-HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CceeEEEeccCCHHHHHHHHHHHHHHhCC
Confidence 5666666554 4655555543 2679999999887765543322 2 34677889985544332221110 1257
Q ss_pred eeEEEEcCCC
Q psy7093 217 FDLVVSNPPY 226 (322)
Q Consensus 217 fDlIv~NPPy 226 (322)
.|++|.|..+
T Consensus 80 iD~li~nag~ 89 (520)
T PRK06484 80 IDVLVNNAGV 89 (520)
T ss_pred CCEEEECCCc
Confidence 8999999765
No 500
>PRK05875 short chain dehydrogenase; Provisional
Probab=68.65 E-value=21 Score=31.75 Aligned_cols=85 Identities=9% Similarity=0.062 Sum_probs=50.5
Q ss_pred CeEEEEcCchhHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEEccCCCcccccccCcC--cCCCC
Q psy7093 141 TRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD--LLEQK 216 (322)
Q Consensus 141 ~~iLDlg~GsG~~~~~la~~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~~~~~~l~~~--~~~~~ 216 (322)
+++|=.|+ +|.++..+++.+ .+.+|++++.++...+.....+...+...++.++..|+.++.....+... ...++
T Consensus 8 k~vlItGa-sg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 86 (276)
T PRK05875 8 RTYLVTGG-GSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWHGR 86 (276)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 67777764 455666666543 25799999998776655444443332224588889998544322211100 01246
Q ss_pred eeEEEEcCCC
Q psy7093 217 FDLVVSNPPY 226 (322)
Q Consensus 217 fDlIv~NPPy 226 (322)
.|.+|.|.-.
T Consensus 87 ~d~li~~ag~ 96 (276)
T PRK05875 87 LHGVVHCAGG 96 (276)
T ss_pred CCEEEECCCc
Confidence 8999998753
Done!