RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7093
(322 letters)
>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 275
Score = 221 bits (566), Expect = 4e-71
Identities = 90/282 (31%), Positives = 140/282 (49%), Gaps = 26/282 (9%)
Query: 39 QAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYI 98
A++ P + ++AH+ ++ D ++ ELT +++ L R A P+QYI
Sbjct: 12 TARLASPRLDAELLLAHVLGLSRTD--LLLNPEEELTPEELERFRALVARRAAGEPLQYI 69
Query: 99 IKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLL 158
+ E F L K++P V IPR ETEEL++ + L P R++++G+G+GAI ++L
Sbjct: 70 LGEAEFWGLDFKVSPGVLIPRPETEELVEWALEALL--LKEPLRVLDLGTGSGAIALALA 127
Query: 159 KHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLE---- 214
K P + A+D S A + +NA H + +++ D E
Sbjct: 128 KERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQG-------------DWFEPLPG 173
Query: 215 QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS 274
+FDL+VSNPPY+P DI L+PE+ +E AL GG DGL+ + I YLKP G
Sbjct: 174 GRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGW 233
Query: 275 IFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
+ LE +D + ++ L G VE KD +DR V
Sbjct: 234 LLLEIGYDQGEAVRALLAAAG----FADVETRKDLAGRDRVV 271
>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase,
release factor-specific. Members of this protein family
are HemK (PrmC), a protein once thought to be involved
in heme biosynthesis but now recognized to be a
protein-glutamine methyltransferase that modifies the
peptide chain release factors. All members of the seed
alignment are encoded next to the release factor 1 gene
(prfA) and confirmed by phylogenetic analysis. SIMBAL
analysis (manuscript in prep.) shows the motif
[LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers
specificity for the release factors rather than for
ribosomal protein L3 [Protein fate, Protein modification
and repair].
Length = 251
Score = 217 bits (556), Expect = 5e-70
Identities = 90/269 (33%), Positives = 131/269 (48%), Gaps = 27/269 (10%)
Query: 52 IMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKM 111
++AH+ + D ++ ELT +++ + L R PV YI+ E F L K+
Sbjct: 5 LLAHVLGKDRAD--LLLHPEEELTPEELARFDALLARRAKGEPVAYILGEREFYGLDFKV 62
Query: 112 TPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
+P V IPR ETEEL++ LE P R++++G+G+GAI ++L K P + A+D
Sbjct: 63 SPGVLIPRPETEELVEAA---LERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDI 119
Query: 172 SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLE----QKFDLVVSNPPYV 227
S A + +NA + N V+ LQ D E KFDL+VSNPPY+
Sbjct: 120 SPEALAVARKNAARLGLDN--------------VEFLQSDWFEPLPGGKFDLIVSNPPYI 165
Query: 228 PSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKI 287
P DI L+PE+ +E AL GG DGL+ + I LKP G + LE +D + +
Sbjct: 166 PEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYDQGEAV 225
Query: 288 KEWLGICGHHMKLKLVENYKDFNNKDRFV 316
+ VE KD KDR V
Sbjct: 226 RALF----EAAGFADVETRKDLAGKDRVV 250
>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 185 bits (472), Expect = 4e-57
Identities = 88/272 (32%), Positives = 130/272 (47%), Gaps = 25/272 (9%)
Query: 52 IMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKM 111
++ D + + EL+ +++ L +L E R PV YI+ F L K+
Sbjct: 27 LLLLHLLGKPRDQL-LAHPEAELSEEELERLRELLERRAEGEPVAYILGSAEFGGLRFKV 85
Query: 112 TPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
V IPR +TE L++ L R++++G+G+GAI I+L K P + IA+D
Sbjct: 86 DEGVLIPRPDTELLVEAA---LALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDI 142
Query: 172 SKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQ---KFDLVVSNPPYVP 228
S A L +NA + + L V Q DL E KFDL+VSNPPY+P
Sbjct: 143 SPDALALARENAERNGLVRVLVV--------------QSDLFEPLRGKFDLIVSNPPYIP 188
Query: 229 SLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIK 288
+ + P+L PE+ YE + AL GG DGL + + I + LKP G + LE + +K
Sbjct: 189 A-EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVK 247
Query: 289 EWLGICGHHMKLKLVENYKDFNNKDRFVELKL 320
G ++VE KD +DR V KL
Sbjct: 248 ALFEDTG---FFEIVETLKDLFGRDRVVLAKL 276
>gnl|CDD|129627 TIGR00536, hemK_fam, HemK family putative methylases. The gene
hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. Both
E. coli and H. influenzae have two members rather than
one. The members from the Mycoplasmas have an additional
C-terminal domain [Protein fate, Protein modification
and repair].
Length = 284
Score = 151 bits (384), Expect = 7e-44
Identities = 83/250 (33%), Positives = 126/250 (50%), Gaps = 22/250 (8%)
Query: 71 NTELTNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIIT 130
ELT D+ + +L R+ +PV Y++ F L + V IPR ETEEL++
Sbjct: 47 TEELTPDEKERIFRLVLRRVKGVPVAYLLGSKEFYGLEFFVNEHVLIPRPETEELVEKAL 106
Query: 131 DKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN 190
L S N ++++G+G+G I ++L FP + IA+D S A + E+NA + +
Sbjct: 107 ASLISQNPI-LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQL-- 163
Query: 191 QLQVFHAEIDSKGQVKNLQPDLLE----QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIK 246
+ +V+ +Q +L E QK D++VSNPPY+ D P + +E +
Sbjct: 164 -----------EHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDEED-LADLPNVVRFEPLL 211
Query: 247 ALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENY 306
AL GG DGLNI++ I +YLKPNG + E + +KE L I VEN
Sbjct: 212 ALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNWQQKSLKELLRIKFTWYD---VENG 268
Query: 307 KDFNNKDRFV 316
+D N K+R V
Sbjct: 269 RDLNGKERVV 278
>gnl|CDD|234247 TIGR03533, L3_gln_methyl, protein-(glutamine-N5) methyltransferase,
ribosomal protein L3-specific. Members of this protein
family methylate ribosomal protein L3 on a glutamine
side chain. This family is related to HemK, a
protein-glutamine methyltranferase for peptide chain
release factors [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 284
Score = 114 bits (289), Expect = 5e-30
Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 18/217 (8%)
Query: 74 LTNDQITHLNKLCECRLA-RMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDK 132
LT + + +L E R+ R+PV Y+ E F L + V IPRS ELI+ D
Sbjct: 56 LTPSEKERILELIERRIEERIPVAYLTNEAWFAGLEFYVDERVLIPRSPIAELIE---DG 112
Query: 133 LES--SNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN 190
R++++ +G+G I I+ FP+ + A+D S A + E N H + +
Sbjct: 113 FAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLED 172
Query: 191 QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDG 250
++ + + +L L +K+DL+VSNPPYV + D+ L E +E AL
Sbjct: 173 RVTLIQS---------DLFAALPGRKYDLIVSNPPYVDAEDMADLPAEY-HHEPELALAS 222
Query: 251 GHDGLNIIKPICVFGSNYLKPNGSIFLETNH--DHLD 285
G DGL++++ I +++L NG + +E + + L+
Sbjct: 223 GEDGLDLVRRILAEAADHLNENGVLVVEVGNSMEALE 259
>gnl|CDD|234958 PRK01544, PRK01544, bifunctional N5-glutamine
S-adenosyl-L-methionine-dependent methyltransferase/tRNA
(m7G46) methyltransferase; Reviewed.
Length = 506
Score = 117 bits (294), Expect = 2e-29
Identities = 83/319 (26%), Positives = 140/319 (43%), Gaps = 39/319 (12%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
+ +L + T K + I P+ + ++ H+ N K + ++ + +L +I KL
Sbjct: 5 IKQILSDATDKLNKIGISSPQLEARILLQHVIN--KPIEYLLINLDEQLNEAEIEAFEKL 62
Query: 86 CECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTR--- 142
E RL P+ YI F + V IPRS+TE L+D++ + P +
Sbjct: 63 LERRLKHEPIAYITGVKEFYSREFIVNKHVLIPRSDTEVLVDVVFQCHSRESGNPEKKQL 122
Query: 143 -------------------MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183
++E+G+G+G I ISLL P IA D S A ++ + NA
Sbjct: 123 NPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNA 182
Query: 184 VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYE 243
+ + V +++Q+ H+ N ++ +QKFD +VSNPPY+ + ++ E YE
Sbjct: 183 IKYEVTDRIQIIHS---------NWFENIEKQKFDFIVSNPPYISHSEKSEMAIETINYE 233
Query: 244 DIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLV 303
AL DGL I +LKPNG I LE + + + G++ +
Sbjct: 234 PSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGFKQEEAVTQIFLDHGYN-----I 288
Query: 304 EN-YKDFNNKDRFVELKLV 321
E+ YKD R + + +
Sbjct: 289 ESVYKDLQGHSRVILISPI 307
>gnl|CDD|236988 PRK11805, PRK11805, N5-glutamine S-adenosyl-L-methionine-dependent
methyltransferase; Provisional.
Length = 307
Score = 109 bits (275), Expect = 8e-28
Identities = 64/223 (28%), Positives = 107/223 (47%), Gaps = 32/223 (14%)
Query: 74 LTNDQITHLNKLCECRLA-RMPVQYIIKE-WNFRDLTLKMTPPVFIPRSETEELIDIITD 131
LT + + +L E R+ R+P Y+ E W F L + V +PRS ELI+ D
Sbjct: 68 LTPSEKARILELIERRINERIPAAYLTNEAW-FCGLEFYVDERVLVPRSPIAELIE---D 123
Query: 132 KLES--SNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA 189
+ TR++++ +G+G I I+ FP + A+D S A + E N H +
Sbjct: 124 GFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLE 183
Query: 190 NQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKL------EPEIALYE 243
+++ + + +L L +++DL+VSNPPYV + D+ L EPE+
Sbjct: 184 DRVTLIES---------DLFAALPGRRYDLIVSNPPYVDAEDMADLPAEYRHEPEL---- 230
Query: 244 DIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLET--NHDHL 284
AL G DGL++++ I +YL +G + +E + HL
Sbjct: 231 ---ALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNSRVHL 270
>gnl|CDD|234318 TIGR03704, PrmC_rel_meth, putative protein-(glutamine-N5)
methyltransferase, unknown substrate-specific. This
protein family is closely related to two different
families of protein-(glutamine-N5) methyltransferase.
The first is PrmB, which modifies ribosomal protein L3
in some bacteria. The second is PrmC (HemK), which
modifies peptide chain release factors 1 and 2 in most
bacteria and also in eukaryotes. The glutamine side
chain-binding motif NPPY shared by PrmB and PrmC is
N[VAT]PY in this family. The protein substrate is
unknown [Protein synthesis, Ribosomal proteins:
synthesis and modification].
Length = 251
Score = 95.6 bits (238), Expect = 4e-23
Identities = 53/205 (25%), Positives = 97/205 (47%), Gaps = 21/205 (10%)
Query: 80 THLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHT 139
L + + R+A +P+++++ F L + + P VF+PR TE L+D + +
Sbjct: 28 GELAAMVDRRVAGLPLEHVLGWAEFCGLRIAVDPGVFVPRRRTEFLVD---EAAALARPR 84
Query: 140 PTRM--IEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTEQNAVMHNVANQ-LQV 194
+ +++ G+GA+ +L +L A ID + C N+A+ V
Sbjct: 85 SGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRC-------ARRNLADAGGTV 137
Query: 195 FHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDG 254
G + + P L + D++ +N PYVP+ I + PE +E ALDGG DG
Sbjct: 138 HE------GDLYDALPTALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADG 191
Query: 255 LNIIKPICVFGSNYLKPNGSIFLET 279
L++++ + ++L P G + +ET
Sbjct: 192 LDVLRRVAAGAPDWLAPGGHLLVET 216
>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional.
Length = 188
Score = 79.6 bits (197), Expect = 8e-18
Identities = 45/169 (26%), Positives = 78/169 (46%), Gaps = 29/169 (17%)
Query: 113 PPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQS 172
V+ P ++ L + DK R++E+G+G+G + I K+ K + +D +
Sbjct: 3 DEVYEPAEDSFLLAENAVDKKGD------RVLEVGTGSGIVAIVAAKN--GKKVVGVDIN 54
Query: 173 KHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLE----QKFDLVVSNPPYVP 228
+A + + NA ++N+ N V+ ++ DL E KFD+++ NPPY+P
Sbjct: 55 PYAVECAKCNAKLNNIRNN------------GVEVIRSDLFEPFRGDKFDVILFNPPYLP 102
Query: 229 SLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277
+ + + + + AL GG DG +I YLKP G I L
Sbjct: 103 TEEEEEWDDWLNY-----ALSGGKDGREVIDRFLDEVGRYLKPGGRILL 146
>gnl|CDD|184930 PRK14966, PRK14966, unknown domain/N5-glutamine
S-adenosyl-L-methionine-dependent methyltransferase
fusion protein; Provisional.
Length = 423
Score = 77.4 bits (190), Expect = 6e-16
Identities = 75/307 (24%), Positives = 135/307 (43%), Gaps = 39/307 (12%)
Query: 15 QKRALATKANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTEL 74
++R A+ A+ + EW +K+P+ N + ++ + T++ +T E+
Sbjct: 138 KERKAASAADGIKMTFDEWLG---LSKLPK--NEARMLLQYASEYTRVQLLT--RGGEEM 190
Query: 75 TNDQITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLE 134
++ ++L + RL PV YI+ F + P V IPR ETE L++ + +L
Sbjct: 191 PDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNPNVLIPRPETEHLVEAVLARLP 250
Query: 135 SSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQV 194
+ R+ ++G+G+GA+ +++ P A D S A + +NA ++ +++
Sbjct: 251 ENG----RVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAA--DLGARVEF 304
Query: 195 FHAE-IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIP------KLEPEIALYEDIKA 247
H D+ P E K+D++VSNPPY+ + D + EP+IAL +
Sbjct: 305 AHGSWFDTD------MPS--EGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTD---- 352
Query: 248 LDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYK 307
DGL+ I+ + + L G + LE D ++ L G VE
Sbjct: 353 ---FSDGLSCIRTLAQGAPDRLAEGGFLLLEHGFDQGAAVRGVLAENG----FSGVETLP 405
Query: 308 DFNNKDR 314
D DR
Sbjct: 406 DLAGLDR 412
>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain. This family
contains methyltransferase domains.
Length = 117
Score = 68.2 bits (167), Expect = 2e-14
Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 7/103 (6%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
R+++ G+G+GA ++ + P + + ++ A L + + +A +++V +
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALY 242
++ L FDLV+ NPPY P PK ++
Sbjct: 61 ---RELLELPDG----SFDLVLGNPPYGPRAGDPKDNRDLYDR 96
>gnl|CDD|184931 PRK14967, PRK14967, putative methyltransferase; Provisional.
Length = 223
Score = 70.1 bits (172), Expect = 4e-14
Identities = 44/174 (25%), Positives = 69/174 (39%), Gaps = 36/174 (20%)
Query: 112 TPPVFIPRSETEELIDIITDKLESSNHTP-TRMIEIGSGTGAITISLLKHFPKLKA---I 167
P V+ P+ +T+ L D L + P R++++ +G+GA+ + A
Sbjct: 12 APGVYRPQEDTQLLADA----LAAEGLGPGRRVLDLCTGSGALAV----AAAAAGAGSVT 63
Query: 168 AIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQ----KFDLVVSN 223
A+D S+ A NA++ V V + D FD+VVSN
Sbjct: 64 AVDISRRAVRSARLNALLAGV---------------DVDVRRGDWARAVEFRPFDVVVSN 108
Query: 224 PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFL 277
PPYVP+ +A D G DG ++ +C L P GS+ L
Sbjct: 109 PPYVPAPP-----DAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLL 157
>gnl|CDD|129628 TIGR00537, hemK_rel_arch, HemK-related putative methylase. The
gene hemK from E. coli was found to contribute to heme
biosynthesis and originally suggested to be
protoporphyrinogen oxidase (Medline 95189105).
Functional analysis of the nearest homolog in
Saccharomyces cerevisiae, YNL063w, finds it is not
protoporphyrinogen oxidase and sequence analysis
suggests that HemK homologs have
S-adenosyl-methionine-dependent methyltransferase
activity (Medline 99237242). Homologs are found, usually
in a single copy, in nearly all completed genomes, but
varying somewhat in apparent domain architecture. This
model represents an archaeal and eukaryotic protein
family that lacks an N-terminal domain found in HemK and
its eubacterial homologs. It is found in a single copy
in the first six completed archaeal and eukaryotic
genomes [Unknown function, Enzymes of unknown
specificity].
Length = 179
Score = 63.7 bits (155), Expect = 3e-12
Identities = 42/155 (27%), Positives = 66/155 (42%), Gaps = 24/155 (15%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
P ++EIG+GTG + I L + + D + A +NA ++NV L V ++
Sbjct: 20 PDDVLEIGAGTGLVAIRLKGKGKCI--LTTDINPFAVKELRENAKLNNV--GLDVVMTDL 75
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK 259
+ KFD+++ NPPY+P D + + D+ A+DGG DG +I
Sbjct: 76 ----------FKGVRGKFDVILFNPPYLPLED----DLRRGDWLDV-AIDGGKDGRKVID 120
Query: 260 PICVFGSNYLKPNGSIFL-----ETNHDHLDKIKE 289
LK G + L D DK+ E
Sbjct: 121 RFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDE 155
>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 63.0 bits (154), Expect = 4e-12
Identities = 30/143 (20%), Positives = 59/143 (41%), Gaps = 32/143 (22%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
+++++G G G + +L K P L+ +D + A + N + + N +VF +++ S
Sbjct: 34 KVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLEN-GEVFWSDLYS 92
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
+ KFDL++SNPP+ G ++ +
Sbjct: 93 ---------AVEPGKFDLIISNPPFH---------------------AGKATDYDVAQRF 122
Query: 262 CVFGSNYLKPNGSIFLETNHDHL 284
+ +LKP G +++ N HL
Sbjct: 123 IAGAARHLKPGGELWIVANR-HL 144
>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 62.6 bits (153), Expect = 2e-11
Identities = 36/153 (23%), Positives = 68/153 (44%), Gaps = 18/153 (11%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++++G+G GA+ + L + K K + ++ + A ++ ++N ++ + ++QV A+I
Sbjct: 47 RILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADI-- 104
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEP--EIALYEDIKALDGGHDGLNIIK 259
K L+ FDL++ NPPY P IA +E + + L
Sbjct: 105 ----KEFLKALVFASFDLIICNPPYFKQGSRLNENPLRAIARHE----ITLDLEDL---- 152
Query: 260 PICVFGSNYLKPNGSIFLETNHDHLDKIKEWLG 292
+ LKP G + + L +I E L
Sbjct: 153 --IRAAAKLLKPGGRLAFVHRPERLAEIIELLK 183
>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain. Protein in
this family function as methyltransferases.
Length = 104
Score = 55.4 bits (134), Expect = 6e-10
Identities = 31/139 (22%), Positives = 51/139 (36%), Gaps = 38/139 (27%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R+++IG GTG++ I L + FP + +D S +L +NA + ++ +
Sbjct: 4 RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAK-LALGPRITFVQGDA-- 60
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
DLLE FD V GG D L ++ +
Sbjct: 61 -----PDALDLLE-GFDAVFIG-------------------------GGGGDLLELLDAL 89
Query: 262 CVFGSNYLKPNGSIFLETN 280
++ LKP G + L
Sbjct: 90 ----ASLLKPGGRLVLNAV 104
>gnl|CDD|225151 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 55.7 bits (135), Expect = 2e-09
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182
EE+ + KL R+ +IG+GTG+ITI P + IAI++ + A +L E+N
Sbjct: 20 EEIRALTLSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERN 77
Query: 183 AVMHNVANQLQVFHAE 198
A V N L+V +
Sbjct: 78 AARFGVDN-LEVVEGD 92
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.).
Length = 107
Score = 50.9 bits (122), Expect = 2e-08
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++++G GTGA+ ++L P + +D S A +L + A +A+ ++V +
Sbjct: 1 RVLDLGCGTGALALALASG-PGARVTGVDISPVALELARKAA-AALLADNVEVLKGDA-- 56
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLD 231
P ++ FD+++S+PP ++
Sbjct: 57 -----EELPPEADESFDVIISDPPLHHLVE 81
>gnl|CDD|233880 TIGR02469, CbiT, precorrin-6Y C5,15-methyltransferase
(decarboxylating), CbiT subunit. This model recognizes
the CbiT methylase which is responsible, in part (along
with CbiE), for methylating precorrin-6y (or
cobalt-precorrin-6y) at both the 5 and 15 positions as
well as the concomitant decarbozylation at C-12. In many
organisms, this protein is fused to the CbiE subunit.
The fused protein, when found in organisms catalyzing
the oxidative version of the cobalamin biosynthesis
pathway, is called CobL [Biosynthesis of cofactors,
prosthetic groups, and carriers, Heme, porphyrin, and
cobalamin].
Length = 124
Score = 51.6 bits (124), Expect = 2e-08
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN 190
+ +IG+GTG++TI + P + AI+++ A DL E+N V+N
Sbjct: 22 VLWDIGAGTGSVTIEAARLVPNGRVYAIERNPEALDLIERNLRRFGVSN 70
>gnl|CDD|223109 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 51.1 bits (123), Expect = 2e-07
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184
+ID I + S ++EIG G GA+T LL+ ++ AI ID+ + A L E+ A
Sbjct: 18 VIDKIVEAANISP--GDNVLEIGPGLGALTEPLLERAARVTAIEIDR-RLAEVLKERFAP 74
Query: 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLE-QKFDLVVSNPPY 226
N L V + + L+ D + VV+N PY
Sbjct: 75 YDN----LTVINGDA--------LKFDFPSLAQPYKVVANLPY 105
>gnl|CDD|225370 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 50.7 bits (122), Expect = 3e-07
Identities = 34/149 (22%), Positives = 58/149 (38%), Gaps = 22/149 (14%)
Query: 83 NKLCECRLARMPVQYIIKEW----NFRDLTLKMTPPVFIPRSETEELIDIITDKLESS-- 136
P EW +LT K P VF S + +D + L +
Sbjct: 101 CMRLHYYSENPPPFADEPEWKVYLLGHELTFKTLPGVF---SRDK--LDKGSRLLLETLP 155
Query: 137 NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196
+++++G G G + + L K P+ K +D + A + +N + V N +V+
Sbjct: 156 PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWA 214
Query: 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPP 225
+ + E KFDL++SNPP
Sbjct: 215 SNLYEPV----------EGKFDLIISNPP 233
>gnl|CDD|128898 smart00650, rADc, Ribosomal RNA adenine dimethylases.
Length = 169
Score = 47.9 bits (115), Expect = 8e-07
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 15/102 (14%)
Query: 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184
+ID I ++EIG G GA+T LL+ ++ AI ID + A L E+ A
Sbjct: 1 VIDKIVRAANLRPGDT--VLEIGPGKGALTEELLERAKRVTAIEIDP-RLAPRLREKFAA 57
Query: 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
N+ V H + L+ DL + + VV N PY
Sbjct: 58 ADNL----TVIHGDA--------LKFDLPKLQPYKVVGNLPY 87
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 45.1 bits (107), Expect = 2e-06
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 12/82 (14%)
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ--NAVMHNVANQLQVFHAEIDS 201
++IG GTG + +LL+ P L+ +D S A + + A+ A ++++ +
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAI- 59
Query: 202 KGQVKNLQPDLLEQKFDLVVSN 223
DL FD+VV++
Sbjct: 60 ---------DLDPGSFDVVVAS 72
>gnl|CDD|181902 PRK09489, rsmC, 16S ribosomal RNA m2G1207 methyltransferase;
Provisional.
Length = 342
Score = 48.0 bits (115), Expect = 3e-06
Identities = 38/131 (29%), Positives = 65/131 (49%), Gaps = 23/131 (17%)
Query: 100 KEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESS--NHTPTRMIEIGSGTGAITISL 157
KE+ LT+K P VF S +D+ + L S+ HT +++++G G G ++ L
Sbjct: 160 KEYQVDGLTVKTLPGVF---SRDG--LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVL 214
Query: 158 LKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV--KNLQPDLLEQ 215
+H PK++ D A L A + AN L+ G+V N+ D+ +
Sbjct: 215 ARHSPKIRLTLSDV--SAAALESSRATL--AANGLE---------GEVFASNVFSDI-KG 260
Query: 216 KFDLVVSNPPY 226
+FD+++SNPP+
Sbjct: 261 RFDMIISNPPF 271
>gnl|CDD|181354 PRK08287, PRK08287, cobalt-precorrin-6Y C(15)-methyltransferase;
Validated.
Length = 187
Score = 46.1 bits (110), Expect = 4e-06
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182
EE+ + KLE H +I++G+GTG+++I FP L+ AI+++ A L ++N
Sbjct: 17 EEVRALALSKLEL--HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKEN 74
Query: 183 AV---MHNVA 189
N+
Sbjct: 75 RQRFGCGNID 84
>gnl|CDD|233115 TIGR00755, ksgA, dimethyladenosine transferase. In both E. coli
and Saccharomyces cerevisiae, this protein is
responsible for the dimethylation of two adjacent
adenosine residues in a conserved hairpin of 16S rRNA in
bacteria, 18S rRNA in eukaryotes. This adjacent
dimethylation is the only rRNA modification shared by
bacteria and eukaryotes. A single member of this family
is present in each of the first 20 completed microbial
genomes. This protein is essential in yeast, but not in
E. coli, where its deletion leads to resistance to the
antibiotic kasugamycin. Alternate name:
S-adenosylmethionine--6-N',N'-adenosyl (rRNA)
dimethyltransferase [Protein synthesis, tRNA and rRNA
base modification].
Length = 253
Score = 46.1 bits (110), Expect = 9e-06
Identities = 31/109 (28%), Positives = 42/109 (38%), Gaps = 24/109 (22%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQS-----KHACD 177
E +I I + ++EIG G GA+T LLK K+ AI ID+ +
Sbjct: 15 ESVIQKIVEAANVLE--GDVVLEIGPGLGALTEPLLKRAKKVTAIEIDRRLAERLRKLLS 72
Query: 178 LTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
L E ++ A L+V E K VVSN PY
Sbjct: 73 LYENLEIIEGDA--LKVDLNE---------------FPKQLKVVSNLPY 104
>gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC. This enzyme,
which is found in biotin biosynthetic gene clusters in
proteobacteria, firmicutes, green-sulfur bacteria,
fusobacterium and bacteroides, is believed to carry out
an enzymatic step prior to the formation of pimeloyl-CoA
(although attribution of this annotation is not
traceable). The enzyme appears related to
methyltransferases by homology [Biosynthesis of
cofactors, prosthetic groups, and carriers, Biotin].
Length = 240
Score = 43.4 bits (103), Expect = 5e-05
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 26/105 (24%)
Query: 124 ELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNA 183
L+ ++ +K P +++IG GTG +T +LLK FP+ + IA D S A
Sbjct: 22 RLLALLKEKGIF---IPASVLDIGCGTGYLTRALLKRFPQAEFIANDIS----------A 68
Query: 184 VMHNVANQLQVFHAEIDSKGQVKNLQPD-----LLEQKFDLVVSN 223
M A+ V+ + D L + FDL+VSN
Sbjct: 69 GML--------AQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSN 105
>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain. This family
appears to be a methyltransferase domain.
Length = 97
Score = 39.6 bits (93), Expect = 2e-04
Identities = 21/99 (21%), Positives = 38/99 (38%), Gaps = 14/99 (14%)
Query: 145 EIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQ 204
++G GTG + L +D SK A +L ++ +++ A+
Sbjct: 3 DLGCGTGRVLR-ALARAGPSSVTGVDISKEALELAKERLRDKGP--KVRFVVADA----- 54
Query: 205 VKNLQPDLLEQKFDLVVS---NPPYVPSLDIPKLEPEIA 240
++L E FDLV+ + Y+ + L E A
Sbjct: 55 -RDL--PFEEGSFDLVICAGLSLDYLSPKQLRALLREAA 90
>gnl|CDD|218990 pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA).
This family consists of several Ribosomal protein L11
methyltransferase (EC:2.1.1.-) sequences.
Length = 294
Score = 41.9 bits (99), Expect = 3e-04
Identities = 40/130 (30%), Positives = 61/130 (46%), Gaps = 25/130 (19%)
Query: 133 LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQL 192
LES ++++G G+G + I+ LK K K + +D A ++NA ++ V QL
Sbjct: 154 LESLVKPGETVLDVGCGSGILAIAALKLGAK-KVVGVDIDPVAVRAAKENAELNGVEAQL 212
Query: 193 QVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKAL--DG 250
+V L DL E K D+VV+N I +P I L DI AL G
Sbjct: 213 EV------------YLPGDLPEGKADVVVAN--------I-LADPLIELAPDIYALVKPG 251
Query: 251 GHDGLN-IIK 259
G+ L+ I++
Sbjct: 252 GYLILSGILE 261
>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain. This family
appears to be have methyltransferase activity.
Length = 151
Score = 39.3 bits (92), Expect = 5e-04
Identities = 33/175 (18%), Positives = 65/175 (37%), Gaps = 40/175 (22%)
Query: 140 PTRMIEIGSGTGAITISLL-KHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
+++++G GTG +T L K P + + ID S+ A + ++NA N ++ +
Sbjct: 4 GIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYEN-VEFIQGD 62
Query: 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII 258
I+ Q++ L + FD+V+SN L+ D ++
Sbjct: 63 IEELPQLQ-----LEDNSFDVVISNE----------------------VLNHLPDPDKVL 95
Query: 259 KPICVFGSNYLKPNGSIFLETNHDH-------LDKIKEWLGICGHHMKLKLVENY 306
+ I LKP G + + D + + G+ + K +
Sbjct: 96 EEII----RVLKPGGVLIVSDPVLLSELPALLEDLERLYAGVLEGAIGKKKLLTI 146
>gnl|CDD|215900 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 254
Score = 39.9 bits (94), Expect = 9e-04
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 15/108 (13%)
Query: 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184
+I+ I DK ++EIG G GA+T L K ++ AI ID + A L E+ A+
Sbjct: 17 VINRIVDKANLQESDT--VLEIGPGKGALTTELAKRAKQVVAIEID-PRLAKRLQEKLAL 73
Query: 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDI 232
NV +V H + K P LVV N PY + I
Sbjct: 74 HPNV----EVVHQDF-LKFSFPKDDP-------FLVVGNIPYNITTPI 109
>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase.
Length = 170
Score = 38.1 bits (89), Expect = 0.002
Identities = 19/91 (20%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 132 KLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQ 191
+N + ++E+GSGTG + I++ P D + A +L ++N ++ ++++
Sbjct: 37 TPGGNNLSGLNVLELGSGTGLVGIAVALLLPGASVTITDLEE-AIELMKKNIELNGLSSK 95
Query: 192 LQVFHAEIDSKGQVKNLQPDLLE-QKFDLVV 221
+ A++ G+ +L D+ + DL++
Sbjct: 96 V---TAKVLDWGE--DLPDDVFDPHPVDLIL 121
>gnl|CDD|234708 PRK00274, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Reviewed.
Length = 272
Score = 38.6 bits (91), Expect = 0.002
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
++EIG G GA+T LL+ K+ A+ ID+
Sbjct: 45 NVLEIGPGLGALTEPLLERAAKVTAVEIDR 74
>gnl|CDD|237852 PRK14896, ksgA, 16S ribosomal RNA methyltransferase KsgA/Dim1
family protein; Provisional.
Length = 258
Score = 38.3 bits (90), Expect = 0.002
Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 24/108 (22%)
Query: 125 LIDI-ITDKL-ESSNHTPTR-MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
LID + D++ E + T ++EIG G GA+T L K K+ AI +D
Sbjct: 12 LIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPR--------- 62
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLE---QKFDLVVSNPPY 226
+A L + + G V+ ++ D L+ +F+ VVSN PY
Sbjct: 63 ------LAEFL---RDDEIAAGNVEIIEGDALKVDLPEFNKVVSNLPY 101
>gnl|CDD|180466 PRK06202, PRK06202, hypothetical protein; Provisional.
Length = 232
Score = 35.7 bits (83), Expect = 0.016
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 27/121 (22%)
Query: 139 TPTRMIEIGSGTGAITISLLKHFP----KLKAIAIDQSKHACDLTEQNAVMHNVANQLQV 194
P +++IG G G + I L + +L+ AID A N V +
Sbjct: 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGV--TFRQ 117
Query: 195 FHA-EIDSKGQVKNLQPDLLEQKFDLVVSN-------PPYVPSL--DIPKLEPEIALYED 244
+ E+ ++G ++FD+V SN V L D L + L+ D
Sbjct: 118 AVSDELVAEG-----------ERFDVVTSNHFLHHLDDAEVVRLLADSAALARRLVLHND 166
Query: 245 I 245
+
Sbjct: 167 L 167
>gnl|CDD|224017 COG1092, COG1092, Predicted SAM-dependent methyltransferases
[General function prediction only].
Length = 393
Score = 35.7 bits (83), Expect = 0.023
Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 38/130 (29%)
Query: 165 KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQ--------- 215
+ ++D SK A + +NA + N L + + + D+ +
Sbjct: 242 EVTSVDLSKRALEWARENAEL----NGLD--------GDRHRFIVGDVFKWLRKAERRGE 289
Query: 216 KFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSI 275
KFDL++ +PP + K K + L P G++
Sbjct: 290 KFDLIILDPP--------------SFARSKKQEFSAQRDY---KDLNDLALRLLAPGGTL 332
Query: 276 FLETNHDHLD 285
+ H
Sbjct: 333 VTSSCSRHFS 342
>gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 34.2 bits (79), Expect = 0.062
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 138 HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQS 172
+++++ GTG + + L K + + +D S
Sbjct: 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDIS 84
>gnl|CDD|234740 PRK00377, cbiT, cobalt-precorrin-6Y C(15)-methyltransferase;
Provisional.
Length = 198
Score = 33.2 bits (76), Expect = 0.091
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 142 RMIEIGSGTGAITI--SLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
+++IG GTG++T+ SLL K A+D+ + A +LT +NA V N + + E
Sbjct: 43 MILDIGCGTGSVTVEASLLVG-ETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGE 100
>gnl|CDD|225173 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 33.8 bits (78), Expect = 0.10
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 23/116 (19%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
++++G G+G + I+ K K K + +D A + +NA ++ V +Q
Sbjct: 163 GKTVLDVGCGSGILAIAAAKLGAK-KVVGVDIDPQAVEAARENARLNGVELLVQA----- 216
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKL-EPEIALYEDIKAL--DGGH 252
+ L FD++V+N I L E + L DIK L GG
Sbjct: 217 ----KGFLLLEVPENGPFDVIVAN--------I--LAEVLVELAPDIKRLLKPGGR 258
>gnl|CDD|240367 PTZ00338, PTZ00338, dimethyladenosine transferase-like protein;
Provisional.
Length = 294
Score = 33.1 bits (76), Expect = 0.18
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 18/86 (20%)
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203
+EIG GTG +T LL+ K+ AI ID + +L ++ +A++L+V
Sbjct: 41 LEIGPGTGNLTEKLLQLAKKVIAIEID-PRMVAELKKRFQNS-PLASKLEVIEG------ 92
Query: 204 QVKNLQPDLLEQ---KFDLVVSNPPY 226
D L+ FD+ V+N PY
Sbjct: 93 -------DALKTEFPYFDVCVANVPY 111
>gnl|CDD|180961 PRK07402, PRK07402, precorrin-6B methylase; Provisional.
Length = 196
Score = 32.3 bits (74), Expect = 0.19
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 145 EIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF 195
+IG+GTG I + PK + IAI++ + +L +N V N ++V
Sbjct: 46 DIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVI 95
>gnl|CDD|217008 pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification
(R-M) systems protect a bacterial cell against invasion
of foreign DNA by endonucleolytic cleavage of DNA that
lacks a site specific modification. The R-M system is a
complex containing three polypeptides: M (this family),
S (pfam01420), and R. This family consists of N-6
adenine-specific DNA methylase EC:2.1.1.72 from Type I
and Type IC restriction systems. These methylases have
the same sequence specificity as their corresponding
restriction enzymes.
Length = 312
Score = 33.0 bits (76), Expect = 0.19
Identities = 25/120 (20%), Positives = 49/120 (40%), Gaps = 20/120 (16%)
Query: 115 VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKH 174
+ PR ++ +++++ K S + P G+G I K D S +
Sbjct: 28 FYTPREVSKLIVELLEPKPGESIYDP------ACGSGGFLIQADKFVKSHDGDTNDISIY 81
Query: 175 ACD-------LTEQNAVMHNVA-NQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
+ L N ++H + N + H D+ + + + + KFD+VV+NPP+
Sbjct: 82 GQELNPTTYRLARMNMILHGIEYNDFGIRHG--DTLL---SPKFEEDK-KFDVVVANPPF 135
>gnl|CDD|223477 COG0400, COG0400, Predicted esterase [General function prediction
only].
Length = 207
Score = 32.3 bits (74), Expect = 0.24
Identities = 22/82 (26%), Positives = 32/82 (39%), Gaps = 14/82 (17%)
Query: 90 LARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSG 149
R +Y ++ DL ETE+L + + + E +R+I IG
Sbjct: 59 GPRFFRRYDEGSFDQEDL-----------DLETEKLAEFLEELAEEYGIDSSRIILIGFS 107
Query: 150 TGA-ITISLLKHFPKL--KAIA 168
GA I +SL P L AI
Sbjct: 108 QGANIALSLGLTLPGLFAGAIL 129
>gnl|CDD|223813 COG0742, COG0742, N6-adenine-specific methylase [DNA replication,
recombination, and repair].
Length = 187
Score = 31.8 bits (73), Expect = 0.28
Identities = 23/128 (17%), Positives = 47/128 (36%), Gaps = 30/128 (23%)
Query: 165 KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNP 224
+ + +++ + A + ++N + + +V D+ +K L + FDLV +P
Sbjct: 68 RVVFVEKDRKAVKILKENLKALGLEGEARVLRN--DALRALKQLG---TREPFDLVFLDP 122
Query: 225 PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDH- 283
PY L+ E+AL + +LKP I +E + D
Sbjct: 123 PY----AKGLLDKELALLLLEEN-------------------GWLKPGALIVVEHDKDVE 159
Query: 284 -LDKIKEW 290
+ +
Sbjct: 160 LPELPANF 167
>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 92
Score = 30.3 bits (69), Expect = 0.28
Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 16/80 (20%)
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203
+++G GTG + +L + + +D S L + + +
Sbjct: 1 LDVGCGTGLLAEALARRGGA-RVTGVDLSPEMLALARKR-------APRKFVVGDA---- 48
Query: 204 QVKNLQPDLLEQKFDLVVSN 223
++ FD+VVS+
Sbjct: 49 ----EDLPFPDESFDVVVSS 64
>gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU. Members
of this protein family are the
S-adenosylmethionine-depenedent C-20 methyltransferase
BchU, part of the pathway of bacteriochlorophyll c
production in photosynthetic green sulfur bacteria. The
position modified by this enzyme represents the
difference between bacteriochlorophylls c and d; strains
lacking this protein can only produced
bacteriochlorophyll d [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 306
Score = 31.9 bits (72), Expect = 0.33
Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 143 MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQL 192
MI++G G G I+ ++LKHFP+L + ++ A DL +NA VA+++
Sbjct: 153 MIDVGGGIGDISAAMLKHFPELDSTILNLPG-AIDLVNENAAEKGVADRM 201
>gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase.
Length = 340
Score = 32.2 bits (73), Expect = 0.34
Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 102 WNFRDLTLKMTPPVFIPRSETEELIDIITDKLESS--NHTPTRMIEIGSGTGAITISLLK 159
W +R L++ + + P TE++ D D LE + + +++++G GTG T+ ++K
Sbjct: 78 WFYRFLSI-VYDHIINPGHWTEDMRD---DALEPADLSDRNLKVVDVGGGTGFTTLGIVK 133
Query: 160 HFPKLKAIAIDQSKH 174
H +DQS H
Sbjct: 134 HVDAKNVTILDQSPH 148
>gnl|CDD|185082 PRK15128, PRK15128, 23S rRNA m(5)C1962 methyltransferase;
Provisional.
Length = 396
Score = 32.1 bits (73), Expect = 0.34
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++ S TG +S L + +++D S+ A D+ QN + N+L + AE
Sbjct: 223 RVLNCFSYTGGFAVSALMGGCS-QVVSVDTSQEALDIARQNVEL----NKLDLSKAEFVR 277
Query: 202 KGQVKNLQPDLLE-QKFDLVVSNPP 225
K L+ +KFD++V +PP
Sbjct: 278 DDVFKLLRTYRDRGEKFDVIVMDPP 302
>gnl|CDD|220246 pfam09445, Methyltransf_15, RNA cap guanine-N2 methyltransferase.
RNA cap guanine-N2 methyltransferases such as
Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2
catalyze methylation of the exocyclic N2 amine of
7-methylguanosine.
Length = 165
Score = 31.1 bits (71), Expect = 0.43
Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200
++++ G G TI F + I I+ AC + NA ++ V++++ D
Sbjct: 2 RIILDVFCGAGGNTIQFANVFCSVIGIDINPEHLAC--AQHNAEVYGVSDRIWFILG--D 57
Query: 201 SKGQVKNLQPDLLEQKFDLVVSNPPY 226
+ L+ + +D V +PP+
Sbjct: 58 WFELLAKLK--FGKIPYDCVFLSPPW 81
>gnl|CDD|232960 TIGR00406, prmA, ribosomal protein L11 methyltransferase.
Ribosomal protein L11 methyltransferase is an
S-adenosyl-L-methionine-dependent methyltransferase
required for the modification of ribosomal protein L11.
This protein is found in bacteria and (with a probable
transit peptide) in Arabidopsis [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 288
Score = 31.7 bits (72), Expect = 0.48
Identities = 24/91 (26%), Positives = 46/91 (50%), Gaps = 11/91 (12%)
Query: 133 LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQL 192
LE + +I++G G+G ++I+ LK K + ID A + +NA ++ V+++L
Sbjct: 153 LEDLDLKDKNVIDVGCGSGILSIAALKLGAA-KVVGIDIDPLAVESARKNAELNQVSDRL 211
Query: 193 QVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223
QV ++ +E K D++V+N
Sbjct: 212 QVKLIYLE----------QPIEGKADVIVAN 232
>gnl|CDD|225958 COG3424, BcsA, Predicted naringenin-chalcone synthase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 356
Score = 31.2 bits (71), Expect = 0.67
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 12/56 (21%)
Query: 243 EDIKALDGGHDGLNIIKPICVFGSN-------YLKPNGSIFLETNHDHLDKIKEWL 291
EDI D G GL V + YL PN + FL T+ ++ I+ W+
Sbjct: 225 EDIMGWDVGDQGLK-----VVLSRDLPNLIESYLAPNVTTFLATHGLSIEDIEAWV 275
>gnl|CDD|152558 pfam12123, Amidase02_C, N-acetylmuramoyl-l-alanine amidase. This
domain is found in bacteria and viruses. This domain is
about 50 amino acids in length. This domain is
classified with the enzyme classification code
EC:3.5.1.28. This domain is the C terminal of the enzyme
which hydrolyses the link between N-acetylmuramoyl
residues and L-amino acid residues in certain cell-wall
glycopeptides.
Length = 44
Score = 28.1 bits (63), Expect = 0.77
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 3/26 (11%)
Query: 269 LKPNGSIFLETNH---DHLDKIKEWL 291
+ +G + ET LDK WL
Sbjct: 10 SQGDGLAYFETEGLSDAELDKFTAWL 35
>gnl|CDD|184963 PRK15001, PRK15001, SAM-dependent 23S ribosomal RNA mG1835
methyltransferase; Provisional.
Length = 378
Score = 31.2 bits (70), Expect = 0.81
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 143 MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSK 202
++++G G G I ++LL P+ K + +D+S A + N V N+ L E
Sbjct: 232 IVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLN-VETNMPEALD--RCEFMIN 288
Query: 203 GQVKNLQPDLLEQKFDLVVSNPPY 226
+ ++P +F+ V+ NPP+
Sbjct: 289 NALSGVEP----FRFNAVLCNPPF 308
>gnl|CDD|150852 pfam10241, KxDL, Uncharacterized conserved protein. This is a
family of short proteins which are conserved over a
region of 80 residues. There is a characteristic KxDL
motif towards the C-terminus. The function is unknown.
Length = 88
Score = 28.8 bits (65), Expect = 1.0
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 4/48 (8%)
Query: 50 QNIMAHIFNTTKIDDVTIVEKNT----ELTNDQITHLNKLCECRLARM 93
A + + +D + + E TN + LN L + RL
Sbjct: 1 SQRFASLVDPEDLDRIIAKQAQILGRLEKTNRMLLELNALSQARLKGA 48
>gnl|CDD|223194 COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA
replication, recombination, and repair].
Length = 381
Score = 30.4 bits (69), Expect = 1.2
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPY 226
+ +L+ L E + +V+SNPPY
Sbjct: 287 QADATDLKEPLEE--YGVVISNPPY 309
>gnl|CDD|227279 COG4943, COG4943, Predicted signal transduction protein containing
sensor and EAL domains [Signal transduction mechanisms].
Length = 524
Score = 30.5 bits (69), Expect = 1.3
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 102 WNFRDLTLKMTPPVFIPRSETEELIDIITD 131
W D T+ ++P VFIP +E +I+ ITD
Sbjct: 306 WPQEDGTV-VSPDVFIPLAEESGMIEQITD 334
>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 30.3 bits (65), Expect = 1.3
Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 16/184 (8%)
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200
+++IG GTG + + + +D S L A + + A+
Sbjct: 50 LGVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADAL 108
Query: 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKAL-DGGHDGLNIIK 259
+ P FDLV+S L P AL E ++ L GG L +
Sbjct: 109 -----GGVLPFEDSASFDLVISLLVLHL------LPPAKALRELLRVLKPGGR--LVLSD 155
Query: 260 PICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICG-HHMKLKLVENYKDFNNKDRFVEL 318
+ F + + D + E + + L+ + +R
Sbjct: 156 LLRDGLLEGRLAALLGFGDPVLERGDILLELEALLRLELLDLEELLGLLGELELERGGLA 215
Query: 319 KLVE 322
+L+E
Sbjct: 216 RLLE 219
>gnl|CDD|233415 TIGR01444, fkbM_fam, methyltransferase, FkbM family. Members of
this family are characterized by two well-conserved
short regions separated by a variable in both sequence
and length. The first of the two regions is found in a
large number of proteins outside this subfamily, a
number of which have been characterized as
methyltransferases. One member of the present family,
FkbM, was shown to be required for a specific
methylation in the biosynthesis of the immunosuppressant
FK506 in Streptomyces strain MA6548.
Length = 144
Score = 29.2 bits (66), Expect = 1.4
Identities = 15/71 (21%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 143 MIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI-DS 201
+I++G+ G ++ + + + IA + A ++ E+N ++N+ N + + +A + D
Sbjct: 2 VIDVGANIGDFSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVGDR 60
Query: 202 KGQVKNLQPDL 212
G+++ DL
Sbjct: 61 DGELEFNVSDL 71
>gnl|CDD|220152 pfam09243, Rsm22, Mitochondrial small ribosomal subunit Rsm22.
Rsm22 has been identified as a mitochondrial small
ribosomal subunit and is a methyltransferase. In
Schizosaccharomyces pombe, Rsm22 is tandemly fused to
Cox11 (a factor required for copper insertion into
cytochrome oxidase) and the two proteins are
proteolytically cleaved after import into the
mitochondria.
Length = 275
Score = 29.8 bits (67), Expect = 1.6
Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 137 NHTPTRMIEIGSGTGAITISLLKHFPKLK-AIAIDQSKHACDLTEQNAVMHNVANQLQVF 195
P +++G+G G + + +P L+ A ID S+ A + E+ A H A +
Sbjct: 32 QFAPLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGEELAR-HIPALKHAWR 90
Query: 196 HAEIDSKGQVKNLQPDLLEQKFDLVV 221
D G + +P DLV
Sbjct: 91 AR--DVIGAALDFEPA------DLVT 108
>gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional.
Length = 256
Score = 30.0 bits (68), Expect = 1.6
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
Query: 142 RMIEIGSGTGAITI-SLLKHFPKLKAIAIDQSKH---------ACDLTEQNAVMHNVA 189
M++ G G I I S+ +H P A A +KH A +L E +++ VA
Sbjct: 125 HMVKQGQGGRIINITSVHEHTPLPGASAYTAAKHALGGLTKAMALELVEHGILVNAVA 182
>gnl|CDD|234080 TIGR02987, met_A_Alw26, type II restriction m6 adenine DNA
methyltransferase, Alw26I/Eco31I/Esp3I family. Members
of this family are the m6-adenine DNA methyltransferase
protein, or domain of a fusion protein that also carries
m5 cytosine methyltransferase activity, of type II
restriction systems of the Alw26I/Eco31I/Esp3I family. A
methyltransferase of this family is alway accompanied by
a type II restriction endonuclease from the
Alw26I/Eco31I/Esp3I family (TIGR02986) and by an
adenine-specific modification methyltransferase. Members
of this family are unusual in that regions of similarity
to homologs outside this family are circularly permuted
[DNA metabolism, Restriction/modification].
Length = 524
Score = 30.1 bits (68), Expect = 1.6
Identities = 23/119 (19%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 116 FIPRSETEELI-DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIA-IDQSK 173
F P + ++ +++ + ++ T T++I+ G G + +LLK ++ ++ +
Sbjct: 7 FTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNI 66
Query: 174 HACDLTEQNAVMHNVANQLQVF-HAEIDSKGQVKNLQPDLLEQK----FDLVVSNPPYV 227
+ D+ ++ + L F EI+ L + FD+V++NPPY
Sbjct: 67 YFADI-DKTLLKR-AKKLLGEFALLEINVINFNSLSYVLLNIESYLDLFDIVITNPPYG 123
>gnl|CDD|236981 PRK11783, rlmL, 23S rRNA m(2)G2445 methyltransferase; Provisional.
Length = 702
Score = 29.8 bits (68), Expect = 2.2
Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 20/87 (22%)
Query: 162 PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221
K D +NA VA + + V +L+ L + LV+
Sbjct: 255 LPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKD------VADLKNPLPKGPTGLVI 308
Query: 222 SNPPY------VPSLDIPKLEPEIALY 242
SNPPY P+L IALY
Sbjct: 309 SNPPYGERLGEEPAL--------IALY 327
>gnl|CDD|226472 COG3963, COG3963, Phospholipid N-methyltransferase [Lipid
metabolism].
Length = 194
Score = 29.3 bits (66), Expect = 2.3
Identities = 28/112 (25%), Positives = 44/112 (39%), Gaps = 26/112 (23%)
Query: 144 IEIGSGTGAITISLLKHFPK---LKAIAIDQSKHACDLTEQNAVMHNVANQL-QVFHAEI 199
+E+G GTG IT ++L + L AI + L Q++
Sbjct: 53 LELGPGTGVITKAILSRGVRPESLTAIEYS---------------PDFVCHLNQLYPGVN 97
Query: 200 DSKGQVKNLQPDLLE---QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKAL 248
G +L+ L E Q FD V+S +P L+ P + IA+ E +
Sbjct: 98 IINGDAFDLRTTLGEHKGQFFDSVISG---LPLLNFP-MHRRIAILESLLYR 145
>gnl|CDD|216342 pfam01170, UPF0020, Putative RNA methylase family UPF0020. This
domain is probably a methylase. It is associated with
the THUMP domain that also occurs with RNA modification
domains.
Length = 172
Score = 28.8 bits (65), Expect = 2.3
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 6/43 (13%)
Query: 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSL----DIPKLEPEI 239
+ L L D +V+NPPY + + KL P
Sbjct: 85 VQADAAKLPL--LNGSVDAIVTNPPYGIRIGSKGALEKLYPAF 125
>gnl|CDD|235041 PRK02472, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 447
Score = 29.4 bits (67), Expect = 2.7
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 10/42 (23%)
Query: 211 DLLEQKFDLVVSNP--PY-VP------SLDIPKL-EPEIALY 242
+LL++ FDL+V NP PY P IP + E E+A
Sbjct: 63 ELLDEDFDLMVKNPGIPYTNPMVEKALEKGIPIITEVELAYL 104
>gnl|CDD|219506 pfam07669, Eco57I, Eco57I restriction-modification methylase.
Homologues of the Escherichia coli Eco57I
restriction-modification methylase are found in several
phylogenetically diverse bacteria. The structure of TaqI
has been solved.
Length = 106
Score = 28.0 bits (63), Expect = 2.8
Identities = 8/11 (72%), Positives = 10/11 (90%)
Query: 216 KFDLVVSNPPY 226
KFD+V+ NPPY
Sbjct: 2 KFDVVIGNPPY 12
>gnl|CDD|223363 COG0286, HsdM, Type I restriction-modification system
methyltransferase subunit [Defense mechanisms].
Length = 489
Score = 29.3 bits (66), Expect = 2.9
Identities = 21/120 (17%), Positives = 51/120 (42%), Gaps = 19/120 (15%)
Query: 115 VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKH 174
+ PR +E +++++ + +S + P G+G + + K+ + + + +
Sbjct: 168 FYTPREVSELIVELLDPEPRNSIYDPAC------GSGGMLLQAAKYLKRHQD---EIFIY 218
Query: 175 ACDLTEQ-------NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYV 227
++ + N ++H + + H D+ K+ D KFD V++NPP+
Sbjct: 219 GQEINDTTYRLAKMNLILHGIEGDANIRHG--DTLSNPKHDDKDDKG-KFDFVIANPPFS 275
>gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function
prediction only].
Length = 257
Score = 28.9 bits (65), Expect = 3.1
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 15/84 (17%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
P R++++G G G T L + +P ID S + + A ++ A
Sbjct: 31 PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSP---AMLAKAAQ--------RLPDATF 79
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSN 223
+ + ++ +P EQ DL+ +N
Sbjct: 80 E-EADLRTWKP---EQPTDLLFAN 99
>gnl|CDD|179177 PRK00945, PRK00945, acetyl-CoA decarbonylase/synthase complex
subunit epsilon; Provisional.
Length = 171
Score = 28.5 bits (64), Expect = 3.6
Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 6/31 (19%)
Query: 155 ISLLKHFPKLKAIAIDQSKHACDLTEQNAVM 185
+S LKHF LK I ID+ H NA M
Sbjct: 126 LSALKHFSPLKTITIDRYYH------PNADM 150
>gnl|CDD|224780 COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 380
Score = 28.8 bits (65), Expect = 4.0
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 148 SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196
S TG I +K + D S A +L ++N V N +V +
Sbjct: 61 SATGIRGIRYAVETGVVKVVLNDISPKAVELIKEN-VRLNSGEDAEVIN 108
>gnl|CDD|187794 cd09663, Csm4_III-A, CRISPR/Cas system-associated RAMP superfamily
protein Csm4. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
RAMP superfamily protein.
Length = 301
Score = 28.6 bits (64), Expect = 4.9
Identities = 15/52 (28%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 225 PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIF 276
++P D + + E+A Y +K DG K I Y GSIF
Sbjct: 225 LFIPDDDELESDTELARYRLVKRRGFNIDGTKPKKQI-----RYFAE-GSIF 270
>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent
methyltransferase [General function prediction only].
Length = 227
Score = 28.0 bits (63), Expect = 5.6
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 116 FIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSK 173
+ EE D L +N+ P +EIG G G + + K P+ + I+
Sbjct: 28 RLGLDPQEEPGD--WSALFGNNNAPIV-LEIGFGMGEFLVEMAKKNPEKNFLGIEIRV 82
>gnl|CDD|218483 pfam05183, RdRP, RNA dependent RNA polymerase. This family of
proteins are eukaryotic RNA dependent RNA polymerases.
These proteins are involved in post transcriptional gene
silencing where they are thought to amplify dsRNA
templates.
Length = 508
Score = 28.2 bits (63), Expect = 6.2
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 253 DGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMK 299
+G+ I F ++ L+ + + F + + I+ WLG + +
Sbjct: 56 NGIIIGDRYLAFSNSQLREHSAWFFAEDRLTAEDIRNWLGDFENIEQ 102
>gnl|CDD|218885 pfam06080, DUF938, Protein of unknown function (DUF938). This
family consists of several hypothetical proteins from
both prokaryotes and eukaryotes. The function of this
family is unknown.
Length = 201
Score = 27.8 bits (62), Expect = 6.3
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKH 174
T R++EI SGTG + P L D +
Sbjct: 25 TTERVLEIASGTGQHAVFFAPLLPNLTWQPSDPDPN 60
>gnl|CDD|223337 COG0259, PdxH, Pyridoxamine-phosphate oxidase [Coenzyme
metabolism].
Length = 214
Score = 27.6 bits (62), Expect = 6.7
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 13 SLQKRALATKANVVDNVLKEWTAKFEQAKIPEPEN 47
S Q R +A++A ++ + E TAKF +IP P +
Sbjct: 140 SKQSRPIASRA-ALEAKVAELTAKFADGEIPRPPH 173
>gnl|CDD|236909 PRK11424, PRK11424, DNA-binding transcriptional activator TdcR;
Provisional.
Length = 114
Score = 26.9 bits (59), Expect = 8.0
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 35 AKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
+KF I +P ++I N HIF+ +++ + + +++N I HL +L
Sbjct: 44 SKFSNFIINKPFSAINNAARHIFSRYLLENKHLFYQYFKISNTGIDHLEQL 94
>gnl|CDD|225317 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 27.3 bits (61), Expect = 9.4
Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 35/129 (27%)
Query: 141 TRMIEIGSGTGAITISLLKHF-PKLKAIAIDQ----SKHACDLTEQNAVMHNVANQLQVF 195
+R++E G+G+GA+T L + P+ + +K A +N + +++ +
Sbjct: 96 SRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTA----RENLSEFGLGDRVTLK 151
Query: 196 HAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGL 255
G V+ + E+ D V LD+P +P L+ D L
Sbjct: 152 L------GDVRE---GIDEEDVDAVF--------LDLP--DPW-------NVLEHVSDAL 185
Query: 256 NIIKPICVF 264
+ V+
Sbjct: 186 KPGGVVVVY 194
>gnl|CDD|176226 cd08265, Zn_ADH3, Alcohol dehydrogenases of the MDR family. This
group resembles the zinc-dependent alcohol dehydrogenase
and has the catalytic and structural zinc-binding sites
characteristic of this group. The medium chain
dehydrogenases/reductase (MDR)/zinc-dependent alcohol
dehydrogenase-like family, which contains the
zinc-dependent alcohol dehydrogenase (ADH-Zn) and
related proteins, is a diverse group of proteins related
to the first identified member, class I mammalian ADH.
MDRs display a broad range of activities and are
distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability. ADH-like proteins typically form dimers
(typically higher plants, mammals) or tetramers (yeast,
bacteria), and generally have 2 tightly bound zinc atoms
per subunit. The active site zinc is coordinated by a
histidine, two cysteines, and a water molecule. The
second zinc seems to play a structural role, affects
subunit interactions, and is typically coordinated by 4
cysteines. Other MDR members have only a catalytic zinc,
and some contain no coordinated zinc.
Length = 384
Score = 27.5 bits (61), Expect = 9.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 55 HIFNTTKIDDVTIVEKNTELTNDQ 78
++FN TK+ D EK E+T
Sbjct: 251 YVFNPTKMRDCLSGEKVMEVTKGW 274
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.397
Gapped
Lambda K H
0.267 0.0829 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,351,028
Number of extensions: 1576674
Number of successful extensions: 1613
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1555
Number of HSP's successfully gapped: 96
Length of query: 322
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 225
Effective length of database: 6,635,264
Effective search space: 1492934400
Effective search space used: 1492934400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.3 bits)