RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7093
(322 letters)
>2b3t_A Protein methyltransferase HEMK; translation termination,
methylation, conformational changes; HET: SAH; 3.10A
{Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*
Length = 276
Score = 211 bits (541), Expect = 1e-67
Identities = 70/295 (23%), Positives = 129/295 (43%), Gaps = 30/295 (10%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
+ L+E ++ + ++ P + I ++ H+ + + T+LT++Q L+ L
Sbjct: 3 YQHWLREAISQLQASESPRRDAEI--LLEHVTGRGRTF--ILAFGETQLTDEQCQQLDAL 58
Query: 86 CECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIE 145
R P+ ++ F L L ++P IPR +TE L++ L P R+++
Sbjct: 59 LTRRRDGEPIAHLTGVREFWSLPLFVSPATLIPRPDTECLVEQA---LARLPEQPCRILD 115
Query: 146 IGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205
+G+GTGAI ++L P + IA+D+ A L ++NA + N +
Sbjct: 116 LGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKN--------------I 161
Query: 206 KNLQPDLLE----QKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
LQ D Q+F ++VSNPPY+ D + ++ +E + AL G+ I I
Sbjct: 162 HILQSDWFSALAGQQFAMIVSNPPYIDEQDPHLQQGDVR-FEPLTALVAADSGMADIVHI 220
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
N L G + LE + +++ + G VE +D+ + +R
Sbjct: 221 IEQSRNALVSGGFLLLEHGWQQGEAVRQAFILAG----YHDVETCRDYGDNERVT 271
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 198 bits (505), Expect = 4e-62
Identities = 65/291 (22%), Positives = 127/291 (43%), Gaps = 29/291 (9%)
Query: 26 VDNVLKEWTAKFEQAKIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQITHLNKL 85
+ ++++ + + + I++ + K D + K+ ++ + + +L
Sbjct: 16 IWSLIR-DCSGKLEGVTETSVLEVLLIVSRVLGIRKED---LFLKDLGVSPTEEKRILEL 71
Query: 86 CECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIE 145
E R + P+ YI+ E F L+ + VF+PR ETEEL+++ + + + + +
Sbjct: 72 VEKRASGYPLHYILGEKEFMGLSFLVEEGVFVPRPETEELVELALELIR--KYGIKTVAD 129
Query: 146 IGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQV 205
IG+G+GAI +S+ F A D S A ++ +NA H V+++ V E
Sbjct: 130 IGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLE---- 184
Query: 206 KNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFG 265
+ ++++SNPPYV L ++ L+E +AL GG DGL+ +
Sbjct: 185 -PFKEKF--ASIEMILSNPPYVK--SSAHLPKDV-LFEPPEALFGGEDGLDFYREFF--- 235
Query: 266 SNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
Y + +E D ++++K+ + KD K RF+
Sbjct: 236 GRYDTSGKIVLMEIGEDQVEELKKI---------VSDTVFLKDSAGKYRFL 277
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 169 bits (431), Expect = 8e-52
Identities = 44/233 (18%), Positives = 82/233 (35%), Gaps = 35/233 (15%)
Query: 89 RLARMPVQYII-KEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIG 147
R AR+ I K L ++ P + + + L++ +EIG
Sbjct: 12 RQARILYNKAIAKA--LFGLDIEYHPKGLVTTPISRYIF------LKTFLRGGEVALEIG 63
Query: 148 SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207
+G A+ + + F K A + + + +N +N +L + I
Sbjct: 64 TGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIK------ 117
Query: 208 LQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSN 267
++E FD++ S PPY +P + + +A+ GG G + +
Sbjct: 118 ---GVVEGTFDVIFSAPPYYD-------KPLGRVLTEREAIGGGKYGEEFSVKLLEEAFD 167
Query: 268 YLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLVENYKDFNNK----DRFV 316
+L P G + L +K+ + G +KL + KD K R
Sbjct: 168 HLNPGGKVALY--LPDKEKLLNVIKERG----IKLGYSVKDIKFKVGTRWRHS 214
>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific;
structural genomics, PSI-biology; 2.55A
{Alicyclobacillus acidocaldarius subsp}
Length = 215
Score = 165 bits (419), Expect = 4e-50
Identities = 56/212 (26%), Positives = 90/212 (42%), Gaps = 16/212 (7%)
Query: 109 LKMTPPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIA 168
++ P IPR +TE L++ L+ TR+I++G+G+G I +S+ P + A
Sbjct: 1 FEVGPDCLIPRPDTEVLVEEAIRFLKRMPS-GTRVIDVGTGSGCIAVSIALACPGVSVTA 59
Query: 169 IDQSKHACDLTEQNAVMHNVANQLQ---VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPP 225
+D S A + +NA I+ + + + +VSNPP
Sbjct: 60 VDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER---------GRPWHAIVSNPP 110
Query: 226 YVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKP-NGSIFLETNHDHL 284
Y+P+ +I +LEP + YE ALDGG DGL + + L +FLE H+
Sbjct: 111 YIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGHNQA 170
Query: 285 DKIKEWLGICGHHMKLKLVENYKDFNNKDRFV 316
D++ V KD DR +
Sbjct: 171 DEVARLFAPWRERG--FRVRKVKDLRGIDRVI 200
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 92.2 bits (229), Expect = 9e-23
Identities = 33/181 (18%), Positives = 60/181 (33%), Gaps = 43/181 (23%)
Query: 115 VFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKH 174
+ P +T L+D LE ++++G+ TG IT L K ++ D +
Sbjct: 3 WYEPGEDTYTLMDA----LEREGLEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIR 55
Query: 175 ACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPK 234
A + ++ +L + ++ D+VV NPPYVP
Sbjct: 56 ALESHRGGNLVRA-------------------DLLCSINQESVDVVVFNPPYVPD----- 91
Query: 235 LEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGIC 294
D + GG+ G +I + + L + ++ L
Sbjct: 92 --------TDDPIIGGGYLGREVIDRFV----DAVTVGMLYLLVIEANRPKEVLARLEER 139
Query: 295 G 295
G
Sbjct: 140 G 140
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 86.1 bits (213), Expect = 1e-19
Identities = 24/167 (14%), Positives = 63/167 (37%), Gaps = 16/167 (9%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHN---VANQLQVFHAE 198
R+ ++G+G GA +++ K + ++S+ + ++ + + + +++V A+
Sbjct: 39 RIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEAD 98
Query: 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVP--SLDIPKLEPEIALYEDIKALDGGHDGLN 256
+ + + ++ L ++ F V+ NPPY P A +
Sbjct: 99 VTLRAK-ARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFED------ 151
Query: 257 IIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLV 303
S + G + L + + +I G +++ L+
Sbjct: 152 ----WIRTASAIMVSGGQLSLISRPQSVAEIIAACGSRFGGLEITLI 194
>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural
genomics, BSGC structure funded by NIH; 1.80A
{Methanocaldococcus jannaschii} SCOP: c.66.1.4
Length = 194
Score = 81.6 bits (202), Expect = 1e-18
Identities = 33/205 (16%), Positives = 72/205 (35%), Gaps = 50/205 (24%)
Query: 92 RMPVQYIIKEWNFRDLTLKMTPPVFIPRS---ETEELIDIITDKLESSNHTPTRMIEIGS 148
V+ I++ + L K VF T+ L++ + + ++++G
Sbjct: 11 VKIVEDILRG---KKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDD------DILDLGC 61
Query: 149 GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNL 208
G G I I+L D ++ A L ++N ++N+ N +L
Sbjct: 62 GYGVIGIALADEVKST--TMADINRRAIKLAKENIKLNNLDNYDIRVVHS--------DL 111
Query: 209 QPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNY 268
++ ++K++ +++NPP G ++ I G
Sbjct: 112 YENVKDRKYNKIITNPPI-------------------------RAGKEVLHRIIEEGKEL 146
Query: 269 LKPNGSIFLETNHDHL--DKIKEWL 291
LK NG I++ + +++
Sbjct: 147 LKDNGEIWVVIQT-KQGAKSLAKYM 170
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 81.8 bits (202), Expect = 3e-18
Identities = 25/159 (15%), Positives = 63/159 (39%), Gaps = 13/159 (8%)
Query: 137 NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196
++I++ SG G I + LL K K + ++ + D+ +++ + + +Q+++
Sbjct: 47 PIRKGKIIDLCSGNGIIPL-LLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIE 105
Query: 197 AEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLN 256
++ K + + +++ D+V NPPY + D + H+ +
Sbjct: 106 YDL------KKITDLIPKERADIVTCNPPYFATPDTSLKNT------NEHFRIARHEVMC 153
Query: 257 IIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICG 295
++ ++ LK G + L I + +
Sbjct: 154 TLEDTIRVAASLLKQGGKANFVHRPERLLDIIDIMRKYR 192
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 82.0 bits (203), Expect = 6e-18
Identities = 46/219 (21%), Positives = 88/219 (40%), Gaps = 47/219 (21%)
Query: 84 KLCECRLARMPV---QYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESS--NH 138
L RL + PV + E++ LT+K P VF +D+ + L S+ H
Sbjct: 141 GLYFGRLEKQPVFDAEKFWGEYSVDGLTVKTLPGVFSRDG-----LDVGSQLLLSTLTPH 195
Query: 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
T +++++G G G ++++ +H PK++ D S A + + + V +VF +
Sbjct: 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG--EVFASN 253
Query: 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII 258
+ S+ ++ +FD+++SNPP+ DG L+
Sbjct: 254 VFSE----------VKGRFDMIISNPPF---------------------HDGMQTSLDAA 282
Query: 259 KPICVFGSNYLKPNGSIFLETNHDHL---DKIKEWLGIC 294
+ + +L G + + N L D + E G
Sbjct: 283 QTLIRGAVRHLNSGGELRIVANA-FLPYPDVLDETFGFH 320
>2h00_A Methyltransferase 10 domain containing protein; structural
genomics, structural genomics consortium, SGC; HET: SAH;
2.00A {Homo sapiens} SCOP: c.66.1.54
Length = 254
Score = 75.5 bits (185), Expect = 5e-16
Identities = 35/208 (16%), Positives = 66/208 (31%), Gaps = 16/208 (7%)
Query: 102 WNFRDLTLKMTPPVFIPRSETEEL-IDIITDKLESSN---HTPTRMIEIGSGTGAITISL 157
L++ + IP I + D + + T R I+IG+G I L
Sbjct: 24 REDFGLSIDIPLERLIPTVPLRLNYIHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLL 83
Query: 158 LKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKF 217
+A + + ++N +N+++ ++V + K + + + E +
Sbjct: 84 GATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVK--VPQKTLLMDALKEESEIIY 141
Query: 218 DLVVSNPPYVPSLD---------IPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNY 268
D + NPP+ + + P I + L +K I
Sbjct: 142 DFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDSLQL 201
Query: 269 LKPNGSIFLETNH-DHLDKIKEWLGICG 295
K L +KE L I G
Sbjct: 202 KKRLRWYSCMLGKKCSLAPLKEELRIQG 229
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA
(guanine1835-N2)-methyltransferase; HET: SAM; 2.30A
{Escherichia coli}
Length = 375
Score = 75.7 bits (186), Expect = 1e-15
Identities = 40/219 (18%), Positives = 75/219 (34%), Gaps = 41/219 (18%)
Query: 84 KLCECRLARMPVQYIIKEWNFR----DLTLKMTPPVFIPRSETEELIDIITDKLESSNHT 139
+L C + + +++ D T+ VF R+ + L +
Sbjct: 166 RLINCTFNEPQLADAPQTVSWKLEGTDWTIHNHANVF-SRTGLDIGARFFMQHLP--ENL 222
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQV-FHAE 198
++++G G G I ++LL P+ K + +D+S A + N + + F
Sbjct: 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN 282
Query: 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII 258
N + +F+ V+ NPP+ N+
Sbjct: 283 --------NALSGVEPFRFNAVLCNPPFH---------------------QQHALTDNVA 313
Query: 259 KPICVFGSNYLKPNGSIFLETNHDHLD---KIKEWLGIC 294
+ LK NG +++ N HLD K+K+ G C
Sbjct: 314 WEMFHHARRCLKINGELYIVANR-HLDYFHKLKKIFGNC 351
>3dmg_A Probable ribosomal RNA small subunit methyltransf;
monomethyltranserase, 16S rRNA methyltransferase, N2
G1207 methyltransferase; HET: SAH; 1.55A {Thermus
thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*
Length = 381
Score = 66.5 bits (162), Expect = 1e-12
Identities = 38/220 (17%), Positives = 85/220 (38%), Gaps = 44/220 (20%)
Query: 85 LCECRLARMPVQYIIKEWNFR----DLTLKMTPPVFIPRSE---TEELIDIITDKLESSN 137
L E P+ + + ++ R + T P VF + L++ + ++L
Sbjct: 172 LLEKEKEAPPLPSLWRAFSARILGAEYTFHHLPGVFSAGKVDPASLLLLEALQERLGPEG 231
Query: 138 HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197
+++++G+G GA+T+ L + ++ ++ + ++ + + Q H+
Sbjct: 232 VRGRQVLDLGAGYGALTLPLARMGAEVV--GVEDDLASVLSLQKGLEANALKA--QALHS 287
Query: 198 EIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNI 257
++D L + +FD++V+NPP+ GG L++
Sbjct: 288 DVDE-----ALTEE---ARFDIIVTNPPFH---------------------VGGAVILDV 318
Query: 258 IKPICVFGSNYLKPNGSIFLETNHDHL---DKIKEWLGIC 294
+ + L+P G FL +N L ++E G
Sbjct: 319 AQAFVNVAAARLRPGGVFFLVSNP-FLKYEPLLEEKFGAF 357
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 9e-09
Identities = 72/374 (19%), Positives = 116/374 (31%), Gaps = 108/374 (28%)
Query: 2 LALKNC---VVLVLSLQKRALATKANVVDNVLKEWTAKFEQAK-IPEPENSIQNIMAHIF 57
L LKNC ++ LQ ++ + WT++ + + I +SIQ + +
Sbjct: 187 LNLKNCNSPETVLEMLQ--------KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 58 NTTK-------IDDVTIVEKNTELTNDQITHLNKL-CECRL---AR-MPVQYIIKEWNFR 105
+ + +V +N + N C++ R V +
Sbjct: 239 KSKPYENCLLVLLNV----QNAK-------AWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 106 DLTLKMTPPVFIPRSETEEL----IDIITDKL--ESSNHTPTRMIEIGSGT--GAITISL 157
++L P E + L +D L E P R+ I G T
Sbjct: 288 HISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 158 LKH--FPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF--HAEIDSK------GQVKN 207
KH KL I I+ S + + E + +L VF A I + V
Sbjct: 347 WKHVNCDKLTTI-IESSLNVLEPAEYRKMFD----RLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 208 LQPDLLEQKFD---LVVSNPP----YVPSLDI---PKLEPEIAL-------YEDIKALDG 250
++ K LV P +PS+ + KLE E AL Y K D
Sbjct: 402 SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 251 GHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMK-LKLVENYKDF 309
+ Y + H+ GHH+K ++ E F
Sbjct: 462 DDLIPPYL-------DQYF-----------YSHI----------GHHLKNIEHPERMTLF 493
Query: 310 NNK---DRFVELKL 320
RF+E K+
Sbjct: 494 RMVFLDFRFLEQKI 507
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 51.8 bits (125), Expect = 3e-08
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 5/70 (7%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
++++G G+G +T+ + K AID A ++T+QN N+ N Q+ +
Sbjct: 38 VVVDVGCGSGGMTVEIAKRCK--FVYAIDYLDGAIEVTKQNLAKFNIKN-CQIIKGR--A 92
Query: 202 KGQVKNLQPD 211
+ + L+ +
Sbjct: 93 EDVLDKLEFN 102
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 50.8 bits (122), Expect = 6e-08
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
+++G GTG +T+ L + AID++ A TE N H + + + + +
Sbjct: 36 VAVDVGCGTGGVTLELAGRVRR--VYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDA-- 91
Query: 202 KGQVKNLQPDLLEQ--KFDLVV 221
P+ L + D+ V
Sbjct: 92 --------PEALCKIPDIDIAV 105
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural
genomics, PSI, protein structure initiative; 1.80A
{Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Length = 396
Score = 49.4 bits (118), Expect = 7e-07
Identities = 31/153 (20%), Positives = 63/153 (41%), Gaps = 23/153 (15%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++++ + TG I + I ID+S A + ++NA ++ V ++++ +
Sbjct: 220 RVLDVFTYTGGFAIHAAIAGAD-EVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG--SA 276
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
+++ LQ +KFD+VV +PP A + K L G +
Sbjct: 277 FEEMEKLQKK--GEKFDIVVLDPP--------------AFVQHEKDLKAGLRAY---FNV 317
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWLGIC 294
G N +K G + + H+D + + +
Sbjct: 318 NFAGLNLVKDGGILVTCSCSQHVDL-QMFKDMI 349
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto
dimethyladenosine transferase, structural genomics,
structural genomics consortium; 1.89A {Plasmodium
falciparum}
Length = 299
Score = 48.1 bits (115), Expect = 1e-06
Identities = 24/107 (22%), Positives = 46/107 (42%), Gaps = 20/107 (18%)
Query: 125 LID--IITDKLESSNHTPT-RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE- 180
L + I+ + ++ + ++EIG GTG +T+ LL K+ I ID +
Sbjct: 25 LKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDS-----RMISE 79
Query: 181 -QNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
+ ++ N L+V+ + ++ KFD+ +N PY
Sbjct: 80 VKKRCLYEGYNNLEVYEGDA--------IKTVF--PKFDVCTANIPY 116
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown
function, PSI-2, protein structure initiative; 2.09A
{Methanosarcina mazei}
Length = 234
Score = 47.5 bits (113), Expect = 2e-06
Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 50/186 (26%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182
++ + + S + ++++G+GTG ++ L++ +P+ +D S+
Sbjct: 29 DDFYGVSVS-IASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSE--------- 78
Query: 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDL----LEQKFDLVVSN--PPYVPSLDIPKLE 236
L++ +VK ++ D E+K+D+VVS ++ D +L
Sbjct: 79 -------KMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHLEDEDKKELY 131
Query: 237 PEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS-IFLETNHDHLDKIKEWLGICG 295
+ LK +G I + H I+
Sbjct: 132 KRSY--------------------------SILKESGIFINADLVHGETAFIENLNKTIW 165
Query: 296 HHMKLK 301
Sbjct: 166 RQYVEN 171
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics,
structural genomics consortium; HET: SAM; 1.90A {Homo
sapiens} SCOP: c.66.1.24
Length = 285
Score = 47.7 bits (114), Expect = 2e-06
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 125 LID--IITDKLESSNHTPT-RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
L + II ++ + PT ++E+G GTG +T+ LL+ K+ A +D + +L ++
Sbjct: 11 LKNPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDP-RLVAELHKR 69
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
VA++LQV ++ L+ DL FD V+N PY
Sbjct: 70 VQ-GTPVASKLQVLVGDV--------LKTDL--PFFDTCVANLPY 103
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 47.2 bits (112), Expect = 2e-06
Identities = 24/152 (15%), Positives = 50/152 (32%), Gaps = 37/152 (24%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
R++++GS + I LL+ AIA + +N H + +++ V A
Sbjct: 22 GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLA-- 79
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK 259
+ L ++I + G +I
Sbjct: 80 -----------NGLS-----------------------AFEEADNIDTITICGMGGRLIA 105
Query: 260 PICVFGSNYLKPNGSIFLETNHDHLDKIKEWL 291
I + L+ ++ L+ N+ D +++WL
Sbjct: 106 DILNNDIDKLQHVKTLVLQPNN-REDDLRKWL 136
>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif,
gamma-N6M-adenosine methyltrans S-adenosyl-methionine
binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}
Length = 878
Score = 47.6 bits (112), Expect = 4e-06
Identities = 22/169 (13%), Positives = 47/169 (27%), Gaps = 18/169 (10%)
Query: 116 FIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAI---DQS 172
+ L I L + + +G+G + ++ F + I D
Sbjct: 298 PTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIE 357
Query: 173 KHACDLTEQN-----AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYV 227
+L + + N + ++ S +VV NPPYV
Sbjct: 358 TLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSL-------NPEDFANVSVVVMNPPYV 410
Query: 228 PSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVF---GSNYLKPNG 273
+ P ++ + A + I +F + ++
Sbjct: 411 SGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGT 459
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 45.5 bits (108), Expect = 4e-06
Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
+ +IG G+G+I I L+ P+ A+ + S+ + NA+ V++
Sbjct: 28 TLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSD-RIAVQQGA 84
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 46.6 bits (110), Expect = 5e-06
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 12/104 (11%)
Query: 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISL-LKHFPKLKAIAIDQSKHACDLTE 180
T E L+ + + G + ++L P ++ + ID A D
Sbjct: 101 TRERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGAT 160
Query: 181 QNAVMHNVANQLQVFHAEIDSKGQVKNLQPDL-LEQKFDLVVSN 223
+ A H +A Q+ + + L + +DL+ SN
Sbjct: 161 RLAAGHALAGQITLHRQDAW----------KLDTREGYDLLTSN 194
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural
genomics, PSI-2, protein structure initiative; 1.50A
{Listeria monocytogenes str}
Length = 244
Score = 46.0 bits (109), Expect = 5e-06
Identities = 24/151 (15%), Positives = 44/151 (29%), Gaps = 37/151 (24%)
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200
R+ +IGS + +K+ AIA + ++ + Q+ V
Sbjct: 23 ERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGN-- 80
Query: 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKP 260
L + D +V A GG +I+
Sbjct: 81 ------GLAVIEKKDAIDTIVI------------------------AGMGGT----LIRT 106
Query: 261 ICVFGSNYLKPNGSIFLETNHDHLDKIKEWL 291
I G+ L + L+ N +++EW
Sbjct: 107 ILEEGAAKLAGVTKLILQPNI-AAWQLREWS 136
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase;
structural genomics, joint center for structural
genomics; HET: MSE SAM; 1.15A {Methanococcus
maripaludis}
Length = 219
Score = 45.6 bits (108), Expect = 6e-06
Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 11/92 (11%)
Query: 133 LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQL 192
+ T I+IGSG GA++I+L K A+D SKH ++ +N N+ +++
Sbjct: 37 INRFGITAGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRI 95
Query: 193 QVFHAEIDSKGQVKNLQ-PDLLEQKFDLVVSN 223
Q+ ++ N+ D DL+VS
Sbjct: 96 QIVQGDVH------NIPIED---NYADLIVSR 118
>3kr9_A SAM-dependent methyltransferase; class I rossmann-like
methyltransferase fold; 2.00A {Streptococcus pneumoniae}
PDB: 3ku1_A*
Length = 225
Score = 45.2 bits (107), Expect = 8e-06
Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
++++GS + I L++ AIA + + +N H + ++QV A
Sbjct: 16 GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANG 75
Query: 200 DSKGQVKNLQPDLLEQKFDLVVS 222
L + ++
Sbjct: 76 --------LAAFEETDQVSVITI 90
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 45.3 bits (107), Expect = 1e-05
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
+++E G G GA T+ L K+ P + +ID S + + +N + + N ++ A I
Sbjct: 40 KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKN-VKFLQANI-- 96
Query: 202 KGQVKNLQPDLLEQKFDLVVSN 223
+ FD +
Sbjct: 97 ------FSLPFEDSSFDHIFVC 112
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 45.2 bits (107), Expect = 1e-05
Identities = 16/90 (17%), Positives = 24/90 (26%), Gaps = 23/90 (25%)
Query: 138 HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQ----LQ 193
++G G G T L + ID M A
Sbjct: 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSD----------DDMLEKAADRLPNTN 81
Query: 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223
A++ +P QK DL+ +N
Sbjct: 82 FGKADLA------TWKPA---QKADLLYAN 102
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.8 bits (108), Expect = 1e-05
Identities = 33/184 (17%), Positives = 72/184 (39%), Gaps = 66/184 (35%)
Query: 2 LALKN----CVV---------LVLSLQKRALATKANVVDNVLKEWTAKFEQAKIP----E 44
++L N VV L L+L+K KA + +Q++IP +
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKA----KA----------PSGLDQSRIPFSERK 413
Query: 45 PENSIQ--NIMAHIFNTTKIDDVT--IVEKNTELTNDQIT-HLNKLCECRLARMPVQYII 99
+ S + + + F++ + + I + +L + ++ + + ++PV Y
Sbjct: 414 LKFSNRFLPVASP-FHSHLLVPASDLINK---DLVKNNVSFNAKDI------QIPV-YDT 462
Query: 100 KEW-NFRDLTLKMTPPVFIPRSETEELID-IITDKL---ESSNHTPTRMIEIG----SGT 150
+ + R L+ S +E ++D II + ++ T +++ G SG
Sbjct: 463 FDGSDLRVLS----------GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGL 512
Query: 151 GAIT 154
G +T
Sbjct: 513 GVLT 516
Score = 45.4 bits (107), Expect = 2e-05
Identities = 34/188 (18%), Positives = 59/188 (31%), Gaps = 68/188 (36%)
Query: 117 IPRSETEELIDIITDKLESSNHTPTRMIEIG----------SGTGAITISLLKHFPKLKA 166
+ + + ++ ++ L + +EI SG L K KA
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQ-----VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 167 IA-IDQSK---------------------H------ACDLTEQNAVMHNV---ANQLQ-- 193
+ +DQS+ H A DL ++ V +NV A +Q
Sbjct: 399 PSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP 458
Query: 194 VFHAEIDSKGQVKNLQ---PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALD- 249
V+ G +L+ + E+ D ++ P + A + LD
Sbjct: 459 VYDTF---DG--SDLRVLSGSISERIVDCIIRLP-----VKWETTTQFKATH----ILDF 504
Query: 250 --GGHDGL 255
GG GL
Sbjct: 505 GPGGASGL 512
Score = 37.3 bits (86), Expect = 0.006
Identities = 69/413 (16%), Positives = 114/413 (27%), Gaps = 152/413 (36%)
Query: 27 DNVLKEWTAKFEQAKIPEPENSIQNIMAHIF--NTTKIDDVTIVEKN----TELTNDQIT 80
D VL +FE + N I + A + N T + + KN +
Sbjct: 81 DQVLNLCLTEFENCYLEG--NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 81 H-----LNKLCECRLAR-MPV---QYIIKEWNFRDL-TLKMTPPVFIPRSETEELIDIIT 130
L + A+ + + Q ++ F +L L T V + +LI
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-FEELRDLYQTYHVLV-----GDLIKFSA 192
Query: 131 DKLESSNHTP-------TRMIEIGS---GTGA---------ITISL-------LKHF--- 161
+ L T T+ + I I IS L H+
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVT 252
Query: 162 -------PK----------------LKAIAIDQSKHACDLTEQNAVMHNVANQLQV-FHA 197
P + A+AI ++ +V + V F
Sbjct: 253 AKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFV------SVRKAITVLFF- 305
Query: 198 EIDSKGQ----VKNLQPDLLEQKFDLVVSNPPY---VPSLDIPKLE----------PE-- 238
I + +L P +LE + P + +L +++ P
Sbjct: 306 -IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGK 364
Query: 239 ---IALY----------------------EDIKALDGGHDGLNII----KPICVFGSNYL 269
I+L KA G D I K F + +L
Sbjct: 365 QVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA-PSGLDQSRIPFSERKL--KFSNRFL 421
Query: 270 KPNGSIFLETNHDHL-----DKIKEWL---GICGHHMKLKL-VENYKDFNNKD 313
P S F H HL D I + L + + +++ V Y F+ D
Sbjct: 422 -PVASPF----HSHLLVPASDLINKDLVKNNVSFNAKDIQIPV--YDTFDGSD 467
Score = 32.3 bits (73), Expect = 0.23
Identities = 37/208 (17%), Positives = 63/208 (30%), Gaps = 76/208 (36%)
Query: 155 ISLL---KHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPD 211
S+L + P I K + E + M +F +D K + + + +
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEK-GKRIRENYSAM--------IFETIVDGKLKTEKIFKE 1709
Query: 212 LLEQKFDLVVSNPPYV--------PSLDIPKLEPEIALYEDIKALDG---------GH-- 252
+ E + + P+L E A +ED+K+ G GH
Sbjct: 1710 INEHSTSYTFRSEKGLLSATQFTQPAL----TLMEKAAFEDLKS-KGLIPADATFAGHSL 1764
Query: 253 ----------------DGLNIIK----------PICVFG-SNY----LKPNGSIFLETNH 281
+ ++ P G SNY + P G + +
Sbjct: 1765 GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP-GRVAASFSQ 1823
Query: 282 DHLDKIKEWLG-ICGHHMKLKLVE--NY 306
+ L + E +G G LVE NY
Sbjct: 1824 EALQYVVERVGKRTG-----WLVEIVNY 1846
Score = 31.2 bits (70), Expect = 0.59
Identities = 19/97 (19%), Positives = 38/97 (39%), Gaps = 25/97 (25%)
Query: 18 ALATKANV--VDNVLK--EWTAKFEQAKIPEPENSIQNI---------MAHIFNTTKIDD 64
ALA+ A+V ++++++ + Q +P E N +A F+ +
Sbjct: 1769 ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY 1828
Query: 65 VTIVEKNTELTND--QITHLNKLCECRLARMPVQYII 99
+VE+ + T +I + N E QY+
Sbjct: 1829 --VVERVGKRTGWLVEIVNYN--VE------NQQYVA 1855
Score = 30.4 bits (68), Expect = 1.0
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 6 NC--VVLVLSLQKRALATKANVVDNVLKEWTAKFEQAKIPEPENSIQNIMAHIF 57
N V + RAL T NV+ N +K K + ++ + S++ + H+F
Sbjct: 1847 NVENQQYVAAGDLRALDTVTNVL-NFIK--LQKIDIIELQK-SLSLEEVEGHLF 1896
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 43.8 bits (103), Expect = 2e-05
Identities = 13/77 (16%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182
+E+ + KL + M +IG+G+ +++I P + A++++ N
Sbjct: 26 QEVRAVTLSKLRLQDDL--VMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDN 83
Query: 183 AVMHNVANQLQVFHAEI 199
N + + A
Sbjct: 84 LKKFVARN-VTLVEAFA 99
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 43.7 bits (103), Expect = 2e-05
Identities = 8/57 (14%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
+ +IG G+G++++ +AI I+ + ++N + ++ +++
Sbjct: 58 LLWDIGGGSGSVSVEWC--LAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGT 112
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent
methyltransferase fold; 2.00A {Escherichia coli K12}
Length = 396
Score = 44.6 bits (106), Expect = 2e-05
Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 21/145 (14%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++ S TG +S L + +++D S+ A D+ QN ++ + F + D
Sbjct: 223 RVLNCFSYTGGFAVSALMGGCS-QVVSVDTSQEALDIARQNVELNKLDLSKAEFVRD-DV 280
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
++ + +KFD++V +PP E+ L G G K I
Sbjct: 281 FKLLRTYRDR--GEKFDVIVMDPP--------------KFVENKSQLMGACRGY---KDI 321
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDK 286
+ L G + + +
Sbjct: 322 NMLAIQLLNEGGILLTFSCSGLMTS 346
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase,
usnRNA, snoRNA, telomerase, cytoplasm,
methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo
sapiens} PDB: 3egi_A*
Length = 241
Score = 44.2 bits (104), Expect = 2e-05
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
+++ G G TI + IAID L NA ++ +A++++
Sbjct: 79 CDVVVDAFCGVGGNTIQFALTGMR--VIAIDIDPVKIALARNNAEVYGIADKIEFIC--- 133
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSNPPY 226
G L L K D+V +PP+
Sbjct: 134 ---GDFLLLASFL---KADVVFLSPPW 154
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 44.1 bits (104), Expect = 2e-05
Identities = 16/84 (19%), Positives = 31/84 (36%), Gaps = 9/84 (10%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
+ + +IG GTG T+ L H + +D D+ +NA + N++ +
Sbjct: 47 KSLIADIGCGTGGQTMVLAGHVTG-QVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSM 105
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSN 223
++ DL+ S
Sbjct: 106 --------DDLPFRNEELDLIWSE 121
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem
adenosyl-L-methionine, rRNA, methyltransferase,
RNA-binding processing; HET: AMP; 1.60A
{Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A*
3gry_A* 3fyd_A 3fyc_A*
Length = 295
Score = 44.2 bits (105), Expect = 3e-05
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 16/105 (15%)
Query: 125 LID--IITDKLESSNHTPT-RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
LID + +ES+N T ++EIG G G +T L K+ K+ I ID+ L
Sbjct: 33 LIDKNFVNKAVESANLTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDK-----SLEPY 87
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
+ + N +++ + L+ DL + F+ VV+N PY
Sbjct: 88 ANKLKELYNNIEIIWGDA--------LKVDLNKLDFNKVVANLPY 124
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB:
3jwj_A
Length = 217
Score = 43.4 bits (102), Expect = 3e-05
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 16/118 (13%)
Query: 129 ITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQS----KHACDLTEQNAV 184
+ L+ SN R+I++G G G + LLK + +D S + A + ++ +
Sbjct: 21 VVAALKQSN--ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRL 78
Query: 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPP--YVPSLDIPKLEPEIA 240
N +LQ+ + D +D ++ + E +
Sbjct: 79 PRNQWERLQLIQGALT--------YQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLF 128
>2r3s_A Uncharacterized protein; methyltransferase domain, structural
genomics, joint center structural genomics, JCSG,
protein structure initiative; HET: MSE; 2.15A {Nostoc
punctiforme}
Length = 335
Score = 43.9 bits (104), Expect = 3e-05
Identities = 12/68 (17%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH 186
+I + + P ++++I + G I++ +H P + +D + ++ ++NA +
Sbjct: 153 QLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQ 211
Query: 187 NVANQLQV 194
VA++
Sbjct: 212 GVASRYHT 219
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus
pneumoniae} SCOP: c.66.1.24
Length = 245
Score = 43.3 bits (103), Expect = 3e-05
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 16/105 (15%)
Query: 125 LID--IITDKLESSNHTPT-RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
L ++ ++ N T + EIG+G G +T L K ++ +I +D L
Sbjct: 12 LTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDS-----HLFNL 66
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
++ + ++ + H +I LQ ++ +V N PY
Sbjct: 67 SSEKLKLNTRVTLIHQDI--------LQFQFPNKQRYKIVGNIPY 103
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 42.5 bits (100), Expect = 4e-05
Identities = 26/175 (14%), Positives = 53/175 (30%), Gaps = 33/175 (18%)
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203
++ G G T L K+ A D + A T Q + N ++ ++
Sbjct: 27 VDATMGNGNDTAFLAGLSKKV--YAFDVQEQALGKTSQRLSDLGIEN-TELILDGHENL- 82
Query: 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYED-IKALDGGHDGLNIIKPIC 262
+ + + N Y+PS D + I ++A++ D
Sbjct: 83 ------DHYVREPIRAAIFNLGYLPSAD----KSVITKPHTTLEAIEKILD--------- 123
Query: 263 VFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLK----LVENYKDFNNKD 313
L+ G + + + H E + + + L Y+ N +
Sbjct: 124 -----RLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGLDQRVFTAMLYQPLNQIN 173
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 42.8 bits (101), Expect = 5e-05
Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 122 TEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
TEE + L TR++++GSG+G + + + + ID S ++
Sbjct: 21 TEEKYATLGRVLRMK--PGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKR 77
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVS 222
A V+ ++ H + + +K D+
Sbjct: 78 RAEELGVSERVHFIHND------AAGYVAN---EKCDVAAC 109
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump
domain, tRNA methyltransferase; HET: SAM; 1.95A
{Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*
Length = 373
Score = 43.3 bits (102), Expect = 7e-05
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 8/78 (10%)
Query: 149 GTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNL 208
G+G I I L + I I++ + E NA+ V ++++ + L
Sbjct: 227 GSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGD------ATQL 280
Query: 209 QPDLLEQKFDLVVSNPPY 226
D +SN PY
Sbjct: 281 SQY--VDSVDFAISNLPY 296
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target
base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET:
5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27
d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A*
2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Length = 421
Score = 43.1 bits (101), Expect = 7e-05
Identities = 24/155 (15%), Positives = 44/155 (28%), Gaps = 25/155 (16%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQ 181
E++D + E+ R++E G + + + + ++ A DL
Sbjct: 25 PEVVDFMVSLAEAPR--GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPW 82
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIAL 241
+ + + FDL++ NPPY + K +
Sbjct: 83 AEGIL-------------------ADFLLWEPGEAFDLILGNPPYGIVGEASKYPIHVFK 123
Query: 242 YEDI---KALDGGHDGLNIIKPICVFGSNYLKPNG 273
KA N+ LKP G
Sbjct: 124 AVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGG 158
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 42.5 bits (100), Expect = 8e-05
Identities = 19/105 (18%), Positives = 40/105 (38%), Gaps = 14/105 (13%)
Query: 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDL 178
T + + I + + ++ +IG GTG T+ L + + ID ++
Sbjct: 31 PEATRKAVSFINELTD-----DAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEI 84
Query: 179 TEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223
+NAV N A++++ + ++ DL+ S
Sbjct: 85 FNENAVKANCADRVKGITGSM--------DNLPFQNEELDLIWSE 121
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase,
S-adenosyl-methionine, 23S ribosoma transferase; HET:
SAM; 1.70A {Thermus thermophilus}
Length = 393
Score = 42.3 bits (100), Expect = 1e-04
Identities = 25/145 (17%), Positives = 50/145 (34%), Gaps = 28/145 (19%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++++ S G + + A+A+D+ A + +Q A + L+V ++
Sbjct: 217 RVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAA----LRLGLRVDIRHGEA 270
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
++ LE F V+ +PP L + + L L +
Sbjct: 271 LPTLRG-----LEGPFHHVLLDPP--------------TLVKRPEELPAMKRHL---VDL 308
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDK 286
L G ++L + HL
Sbjct: 309 VREALRLLAEEGFLWLSSCSYHLRL 333
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor
analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB:
1qan_A* 1qao_A* 1qaq_A* 2erc_A
Length = 244
Score = 41.7 bits (99), Expect = 1e-04
Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 16/105 (15%)
Query: 125 LID--IITDKLESSNHTPT-RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
+ I + + + EIGSG G T+ L++ + AI ID L +
Sbjct: 13 ITSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDH-----KLCKT 67
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
+ QV + +I LQ + + + N PY
Sbjct: 68 TENKLVDHDNFQVLNKDI--------LQFKFPKNQSYKIFGNIPY 104
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure
initiative dependent methyltransferase; HET: SAI; 1.94A
{Leishmania major} SCOP: c.66.1.42
Length = 254
Score = 40.8 bits (95), Expect = 3e-04
Identities = 24/160 (15%), Positives = 47/160 (29%), Gaps = 27/160 (16%)
Query: 137 NHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFH 196
H +R ++ G+G G IT +LL ++ KH + ++ V
Sbjct: 91 GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGK---FIL 146
Query: 197 AEIDSKGQVKNLQPDLLEQKFDLVVSN--PPYVPSLDIPKLEPEIALYEDIKALDGGHDG 254
A +++ L +DL+V Y+ D K +AL
Sbjct: 147 ASMET--------ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQ-----QALTPNGY- 192
Query: 255 LNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGIC 294
F N + + + + + +
Sbjct: 193 -------IFFKENCSTGDRFLVDKEDSSLTRSDIHYKRLF 225
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 40.8 bits (96), Expect = 4e-04
Identities = 28/145 (19%), Positives = 58/145 (40%), Gaps = 24/145 (16%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R +++ S G + L F + +A+D S A E+NA ++ + N ++
Sbjct: 212 RALDVFSYAGGFALHLALGFRE--VVAVDSSAEALRRAEENARLNGLGN--VRVLEA-NA 266
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
++ L+ + ++FDLVV +PP A + K ++ + K +
Sbjct: 267 FDLLRRLEKE--GERFDLVVLDPP--------------AFAKGKKDVERAYRAY---KEV 307
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDK 286
+ LK G + + H+ +
Sbjct: 308 NLRAIKLLKEGGILATASCSHHMTE 332
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD
factor, fixation, symbiosis, alpha/beta structure; HET:
SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*
Length = 216
Score = 39.8 bits (93), Expect = 5e-04
Identities = 26/166 (15%), Positives = 45/166 (27%), Gaps = 43/166 (25%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
+ +EIG GA T L H +L ID A Q + + +I
Sbjct: 52 VSNGLEIGCAAGAFTEKLAPHCKRL--TVIDVMPRAIGRACQRT---KRWSHISWAATDI 106
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSNP--PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNI 257
+ FDL+V Y+ + + I +
Sbjct: 107 LQ---------FSTAELFDLIVVAEVLYYLEDMT--------QMRTAIDNM--------- 140
Query: 258 IKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHMKLKLV 303
L P G + + D + W + G + ++
Sbjct: 141 --------VKMLAPGGHLVFGSARDATC--RRWGHVAGAETVITIL 176
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research; 2.33A {Bacteroides vulgatus}
Length = 363
Score = 40.4 bits (95), Expect = 5e-04
Identities = 7/56 (12%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVF 195
P R+++IG TG +++ +++ +D ++ + + + ++
Sbjct: 180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLP-QQLEMMRKQTAGLSGSERIHGH 234
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis;
1.98A {Coxiella burnetii}
Length = 255
Score = 39.8 bits (94), Expect = 5e-04
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 125 LID--IITDKLESSNHTP-TRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
L D ++ + + + ++EIG G GA+T LL L + ID+
Sbjct: 12 LHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDR 61
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint
center for structural genomics, JCSG; HET: SAH; 2.11A
{Anabaena variabilis atcc 29413}
Length = 245
Score = 39.6 bits (92), Expect = 6e-04
Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 10/80 (12%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
+I+ G G T L + FP + I +D SK A ++ + N++ +L +
Sbjct: 59 PLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQA 116
Query: 202 KGQVKNLQPDLLEQKFDLVV 221
+ + D +
Sbjct: 117 --------AQIHSEIGDANI 128
>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase
S-adenosly-L-methionine dependent methyltransfer
posttranslational modification; 1.59A {Thermus
thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A
2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A*
3egv_A* 3cjt_A*
Length = 254
Score = 40.0 bits (94), Expect = 6e-04
Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 17/93 (18%)
Query: 133 LESSNHTPTRMIEIGSGTG--AITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN 190
L +++++G+G+G AI L KA+ +D E NA + V
Sbjct: 114 LARHLRPGDKVLDLGTGSGVLAIAAEKLGG----KALGVDIDPMVLPQAEANAKRNGVRP 169
Query: 191 QLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223
+ +L+ L FDL+V+N
Sbjct: 170 RFLEG-----------SLEAALPFGPFDLLVAN 191
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
factor, transcription initiation; 2.60A {Saccharomyces
cerevisiae} SCOP: c.66.1.24
Length = 353
Score = 39.9 bits (93), Expect = 7e-04
Identities = 11/119 (9%), Positives = 35/119 (29%), Gaps = 13/119 (10%)
Query: 123 EELIDIITDKL----ESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDL 178
+ + I DKL + +++++ G G + + + +++
Sbjct: 38 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKF 97
Query: 179 TEQNA------VMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFD--LVVSNPPYVPS 229
++ + + + ++ + + D L V+N S
Sbjct: 98 LNAKFEGSPLQILKRDPYDWSTYS-NLIDEERIFVPEVQSSDHINDKFLTVANVTGEGS 155
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural
genomics, protein structure initiative, PSI; 2.50A
{Clostridium acetobutylicum} SCOP: c.66.1.43
Length = 246
Score = 39.7 bits (93), Expect = 7e-04
Identities = 31/174 (17%), Positives = 56/174 (32%), Gaps = 45/174 (25%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQN 182
++ D I +K +N +++ GTG +T +L F A+D S+
Sbjct: 21 KKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQE-------- 70
Query: 183 AVMHNVANQLQVFHAEIDSKGQVKNLQPDL----LEQKFDLVVSNPPYVPSLDIPKLEPE 238
M + A + + D+ + +KFDL+
Sbjct: 71 --MLSEAEN----KFR-SQGLKPRLACQDISNLNINRKFDLITC---------------- 107
Query: 239 IALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLG 292
+ + D K + SN+LK G + N K+ + LG
Sbjct: 108 --CLDSTNYIIDSDDLKKYFKAV----SNHLKEGGVFIFDIN--SYYKLSQVLG 153
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}
Length = 354
Score = 39.8 bits (93), Expect = 7e-04
Identities = 13/79 (16%), Positives = 30/79 (37%), Gaps = 10/79 (12%)
Query: 149 GTGAITI-SLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207
G+G I + + P A D + L + A+ ++ ++ ++
Sbjct: 213 GSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSW-IRFLR------ADARH 265
Query: 208 LQPDLLEQKFDLVVSNPPY 226
L + D +++NPP+
Sbjct: 266 LPRF--FPEVDRILANPPH 282
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 39.3 bits (91), Expect = 8e-04
Identities = 23/133 (17%), Positives = 47/133 (35%), Gaps = 19/133 (14%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
+ ++G+GTG ++ L K + I ++ K A D+ +N E
Sbjct: 52 VVADLGAGTGVLSYGALLLGAK-EVICVEVDKEAVDVLIENL-------------GEFKG 97
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
K +V + D+V+ NPP+ + + + +++ KP
Sbjct: 98 KFKVFIGDVSEFNSRVDIVIMNPPF----GSQRKHADRPFLLKAFEISDVVYSIHLAKPE 153
Query: 262 CV-FGSNYLKPNG 273
F + +G
Sbjct: 154 VRRFIEKFSWEHG 166
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent
methyltransfer structural genomics, PSI-2; HET: MSE;
1.90A {Burkholderia thailandensis}
Length = 352
Score = 39.7 bits (93), Expect = 9e-04
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQV 194
+I++ G G +L+ P+L D D + H++ +++
Sbjct: 181 RTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLP-TTRDAARKTIHAHDLGGRVEF 233
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 38.9 bits (90), Expect = 0.001
Identities = 24/157 (15%), Positives = 38/157 (24%), Gaps = 46/157 (29%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++E G G G + A D S L NA V+
Sbjct: 51 RVLEAGCGHGPDAARFGPQAA--RWAAYDFSPELLKLARANAP------HADVYEWNGKG 102
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPI 261
+ P L F L+VS P + + L
Sbjct: 103 E------LPAGLGAPFGLIVSR-----------RGPTSVI-LRLPEL------------- 131
Query: 262 CVFGSNYLKPNGSIFLETNHDHLDKIKEWLGICGHHM 298
P+ ++ ++ E L G +
Sbjct: 132 -------AAPDAHFLYVGPRLNVPEVPERLAAVGWDI 161
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S
rRNA, NESG, structural genomics, PSI, protein structure
initiative; HET: SAM; 2.80A {Escherichia coli} SCOP:
c.66.1.33
Length = 269
Score = 39.1 bits (91), Expect = 0.001
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Query: 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHA 175
+ + ++ + ++L+ T +++IG G G T + P++ +D SK A
Sbjct: 68 QPLRDAIVAQLRERLDDK---ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVA 121
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved
hypothetical protein, PSI, protein structure initiative;
1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32
Length = 200
Score = 38.5 bits (89), Expect = 0.001
Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 18/96 (18%)
Query: 133 LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQL 192
N +I+ G+G G + A D A + ++N N
Sbjct: 45 YNDGNIGGRSVIDAGTGNGILACGSYL-LGAESVTAFDIDPDAIETAKRNCGGVNFMVA- 102
Query: 193 QVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVP 228
+ K+D + NPP+
Sbjct: 103 ----------------DVSEISGKYDTWIMNPPFGS 122
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet;
adenosine dimethyltransferase, rRNA modification,
transferase, translation; 2.10A {Escherichia coli} SCOP:
c.66.1.24 PDB: 4adv_V 3tpz_A
Length = 252
Score = 38.7 bits (91), Expect = 0.001
Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 21/110 (19%)
Query: 125 LIDI-ITDK-LESSNHTP-TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
L D + D + + N M+EIG G A+T + + +L I +D+ DL +
Sbjct: 4 LNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDR-----DLAAR 58
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDL-----VVSNPPY 226
+ +L ++ + + + E + V N PY
Sbjct: 59 LQTHPFLGPKLTIYQQDA--------MTFNFGELAEKMGQPLRVFGNLPY 100
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural
genomics, pyrococcus PSI-2, protein structure
initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm
3638}
Length = 373
Score = 38.9 bits (90), Expect = 0.002
Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 8/88 (9%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
+ +G +I+L+ + +D + E+ A + +++F +
Sbjct: 175 DIFVLGDDDL-TSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYED-IEIFTFD--- 229
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVPS 229
++ PD KFD +++PP
Sbjct: 230 ---LRKPLPDYALHKFDTFITDPPETLE 254
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum}
PDB: 3jwi_A
Length = 219
Score = 38.0 bits (88), Expect = 0.002
Identities = 18/118 (15%), Positives = 41/118 (34%), Gaps = 16/118 (13%)
Query: 129 ITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQS----KHACDLTEQNAV 184
+ L+S N ++I++G G G + LLK + +D S + A D + + +
Sbjct: 21 VVAVLKSVN--AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRL 78
Query: 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPP--YVPSLDIPKLEPEIA 240
++ +F + + D +D ++ + E +
Sbjct: 79 PEMQRKRISLFQSSLV--------YRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLF 128
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 38.0 bits (88), Expect = 0.002
Identities = 13/85 (15%), Positives = 31/85 (36%), Gaps = 12/85 (14%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
P +++ G G G + + L+ P+ K ID + + + ++ A
Sbjct: 23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDAT 82
Query: 199 IDSKGQVKNLQPDLLEQKFDLVVSN 223
++ L K+D+ + +
Sbjct: 83 --------EIE---LNDKYDIAICH 96
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 38.1 bits (88), Expect = 0.002
Identities = 19/105 (18%), Positives = 35/105 (33%), Gaps = 8/105 (7%)
Query: 119 RSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDL 178
RS T E + L H R++++ GTG +I L++ ++D S
Sbjct: 39 RSRTAEYKAWLLGLLR--QHGCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKY 94
Query: 179 TEQNAVMHNVANQLQVFHA-EIDSKGQVKNLQPDLLEQKFDLVVS 222
+ + E + K++ FD V+
Sbjct: 95 ALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAG---DGFDAVIC 136
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification,
transferase; HET: SAM; 2.00A {Methanocaldococcus
jannaschii}
Length = 272
Score = 37.7 bits (87), Expect = 0.003
Identities = 35/250 (14%), Positives = 83/250 (33%), Gaps = 39/250 (15%)
Query: 25 VVDNVLKEWTAKFEQA------KIPEPENSIQNIMAHIFNTTKIDDVTIVEKNTELTNDQ 78
V+ K+++ K E+ I+ I+ I+ T++T +
Sbjct: 16 VLFQGPLHMGIKYQKIGDVVIVKKELSEDEIREIVKRTKCKA------ILLYTTQITGEF 69
Query: 79 ITHLNKLCECRLARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNH 138
T K+ L + I KE+ L + ++ + E ++ ++
Sbjct: 70 RTPHVKI----LYGKETETIHKEYGCL-FKLDVAKIMWSQGNIEE------RKRMAFISN 118
Query: 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
++++ +G G TI L K+ AI+++ A +N ++ + N + +
Sbjct: 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILA-- 176
Query: 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYV------PSLDIPKLEPEIALYEDIKALDGGH 252
D++ + D V+ + + + K I +E +
Sbjct: 177 -DNRDVEL-------KDVADRVIMGYVHKTHKFLDKTFEFLKDRGVIHYHETVAEKIMYE 228
Query: 253 DGLNIIKPIC 262
+ +K
Sbjct: 229 RPIERLKFYA 238
>2b78_A Hypothetical protein SMU.776; structure genomics,
methyltransferase, caries, structural genomics, unknown
function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9
c.66.1.51 PDB: 3ldf_A*
Length = 385
Score = 38.0 bits (89), Expect = 0.003
Identities = 18/136 (13%), Positives = 42/136 (30%), Gaps = 21/136 (15%)
Query: 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ 209
T A +++ ++D +K + L+ + +++ D K +
Sbjct: 223 TAAFSVAAAMGGAM-ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVM-DVFDYFKYAR 280
Query: 210 PDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICVFGSNYL 269
+D+++ +PP + + K + + G L
Sbjct: 281 RH--HLTYDIIIIDPP--------------SFARNKKEVFSVSKDY---HKLIRQGLEIL 321
Query: 270 KPNGSIFLETNHDHLD 285
NG I TN ++
Sbjct: 322 SENGLIIASTNAANMT 337
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 38.0 bits (88), Expect = 0.003
Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 17/94 (18%)
Query: 133 LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQL 192
+ ++E+ +G G +T L + A++ S + +
Sbjct: 76 ATRTGPVSGPVLELAAGMGRLTFPFLDLG--WEVTALELSTS----------VLAAFRK- 122
Query: 193 QVFHAEIDSKGQVKNLQPDL----LEQKFDLVVS 222
++ A D + + +Q D+ L+++F VV
Sbjct: 123 RLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVI 156
>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH;
1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A*
3mte_A*
Length = 225
Score = 37.5 bits (86), Expect = 0.003
Identities = 25/167 (14%), Positives = 48/167 (28%), Gaps = 32/167 (19%)
Query: 124 ELIDIITDKLES--SNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ 181
+ +D+ D+L I++G+G G L + I ID K +
Sbjct: 8 KTVDLSKDELTEIIGQFDRV-HIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISK 66
Query: 182 NAVMHNVANQLQ--VFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEI 239
+ L VF ++L P L+ D + P+ +L ++P
Sbjct: 67 KIIKKPSKGGLSNVVF-----VIAAAESL-PFELKNIADSISILFPW-GTLLEYVIKPNR 119
Query: 240 ALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDK 286
+ ++ L K T + +
Sbjct: 120 DILSNVADL--------------------AKKEAHFEFVTTYSDSYE 146
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
genomics, PSI, protein structure initiative; HET: MSE;
1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Length = 187
Score = 36.7 bits (86), Expect = 0.004
Identities = 22/135 (16%), Positives = 42/135 (31%), Gaps = 41/135 (30%)
Query: 165 KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNP 224
K+I I+++ A + ++N + + +V + + + Q + +FDLV+ +P
Sbjct: 69 KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALE----QFYEEKLQFDLVLLDP 124
Query: 225 PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC--VFGSNYLKPNGSIFLETNHD 282
PY I + L I ET+
Sbjct: 125 PY---------------------------AKQEIVSQLEKMLERQLLTNEAVIVCETDKT 157
Query: 283 --------HLDKIKE 289
L K +E
Sbjct: 158 VKLPETIGTLKKTRE 172
>2esr_A Methyltransferase; structural genomics, hypothetical protein,
streptococcus PYO PSI, protein structure initiative;
HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Length = 177
Score = 36.4 bits (85), Expect = 0.005
Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 7/62 (11%)
Query: 165 KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNP 224
A+ +++++ A + + N +M N+ + E + L +FDLV +P
Sbjct: 56 AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC-------LTGRFDLVFLDP 108
Query: 225 PY 226
PY
Sbjct: 109 PY 110
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll,
BCHU, SAM, SAH, adenosylmethyonine,
S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium
tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Length = 359
Score = 37.4 bits (87), Expect = 0.005
Identities = 19/54 (35%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQV 194
+MI++G G G I+ ++LKHFP+L + ++ A DL +NA VA++++
Sbjct: 192 KKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRG 244
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA
methyltransferase, mtase, anti resistance,
methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus}
PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Length = 249
Score = 36.7 bits (86), Expect = 0.005
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK-LKAIAIDQ 171
E ++ I ++L ++E+G GTG +T LL+H K L I +D+
Sbjct: 17 EGVLKKIAEELNIEEGNT--VVEVGGGTGNLTKVLLQHPLKKLYVIELDR 64
>3fut_A Dimethyladenosine transferase; methyltransferase,
dimethyltransferase, dual-specific methyltransferase,
16S rRNA methyltransferase; 1.52A {Thermus thermophilus}
PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Length = 271
Score = 36.7 bits (86), Expect = 0.005
Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 125 LID--IITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
L+ + +E++ + E+G G GA+T +LL+ ++ AI D
Sbjct: 30 LVSEAHLRRIVEAARPFTGPVFEVGPGLGALTRALLEAGAEVTAIEKDL 78
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 36.7 bits (84), Expect = 0.006
Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 11/83 (13%)
Query: 138 HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197
R + IG G +T LL H ++ ++ +L+ + V + V
Sbjct: 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDG-VNVITG 179
Query: 198 EIDSKGQVKNLQPDLLEQKFDLV 220
+ + +FD++
Sbjct: 180 DET----------VIDGLEFDVL 192
>1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics
hypothetical protein, structure 2 function project, S2F,
TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP:
c.66.1.14
Length = 244
Score = 36.0 bits (82), Expect = 0.008
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF--PKLKAIAIDQSKHACDLTE 180
+I I E + + ++G GA T+S ++ P +K I ID S+ +
Sbjct: 42 SNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCR 101
Query: 181 QNAVMHNVANQLQVFHAE 198
Q+ ++ +++ +
Sbjct: 102 QHIAAYHSEIPVEILCND 119
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold,
protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo
sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A*
2aox_A* 1jqe_A* 2aow_A*
Length = 292
Score = 36.2 bits (83), Expect = 0.009
Identities = 11/87 (12%), Positives = 28/87 (32%), Gaps = 6/87 (6%)
Query: 142 RMIEIGSGTGAITISLLKHFPK------LKAIAIDQSKHACDLTEQNAVMHNVANQLQVF 195
+++ IG G G I + +L + ++ S ++ + ++
Sbjct: 55 KILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFA 114
Query: 196 HAEIDSKGQVKNLQPDLLEQKFDLVVS 222
+ S + QK+D +
Sbjct: 115 WHKETSSEYQSRMLEKKELQKWDFIHM 141
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics
consortium (SGC), methyltransferase, phosphoprotein,
S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}
Length = 292
Score = 36.1 bits (82), Expect = 0.011
Identities = 10/85 (11%), Positives = 34/85 (40%), Gaps = 1/85 (1%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
++++G G +T+S+ + + + +D QN + H ++ +L++ ++
Sbjct: 49 DVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQN-IRHYLSEELRLPPQTLEG 107
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPY 226
+ + +K ++
Sbjct: 108 DPGAEGEEGTTTVRKRSCFPASLTA 132
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 36.1 bits (84), Expect = 0.011
Identities = 23/187 (12%), Positives = 71/187 (37%), Gaps = 27/187 (14%)
Query: 87 ECRLARMPVQYIIKEWNFRDLTLKMTPPVFI-PRSE-TEELIDIITDKLESSNHTPTRMI 144
+ L + + + +++ + F P + ++++ D + + ++
Sbjct: 163 KIELDQDYIDERLPVAG-KEMIYRQVENSFTQPNAAMNIQMLEWALDVTK---GSKGDLL 218
Query: 145 EIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN----QL---QVFHA 197
E+ G G +++L ++F + +A + +K + + N +++ N ++ + A
Sbjct: 219 ELYCGNGNFSLALARNFD--RVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQA 276
Query: 198 EIDSKGQVKNLQPDLLEQKFDLVVSNPP----YVPSLDIPKLEPEIA--------LYEDI 245
+ + DL + + + +PP + + + P I L +++
Sbjct: 277 MNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNL 336
Query: 246 KALDGGH 252
+ L H
Sbjct: 337 ETLSQTH 343
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 35.4 bits (82), Expect = 0.013
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 10/83 (12%)
Query: 142 RMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200
++++G+G G L K K K AID + + + + N ++V +E +
Sbjct: 40 TVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN-VEVLKSEEN 98
Query: 201 SKGQVKNLQPDLLEQKFDLVVSN 223
L + D +
Sbjct: 99 K--------IPLPDNTVDFIFMA 113
>2p7i_A Hypothetical protein; putative methyltransferase, structural
genomics, joint cente structural genomics, JCSG; 1.74A
{Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41
PDB: 2p7h_A
Length = 250
Score = 35.6 bits (82), Expect = 0.015
Identities = 32/189 (16%), Positives = 63/189 (33%), Gaps = 52/189 (27%)
Query: 116 FIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHA 175
F ++ T P ++E+GS G T L +HF ++ S+ A
Sbjct: 24 FDFDVMHPFMVRAFTPFFR-----PGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEA 76
Query: 176 CDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKL 235
+ + + H+ + L +++D +V + L
Sbjct: 77 ISHAQGRL-----KDGITYIHSRFEDA---------QLPRRYDNIV-------LTHV--L 113
Query: 236 EPEIALYEDIKALDGGH--DGLNIIKPICVFGSNYLKPNGSIFLET-NHDHLD-KIKEWL 291
E H D + ++K I ++L G +FL N + + +I +
Sbjct: 114 E---------------HIDDPVALLKRIN---DDWLAEGGRLFLVCPNANAVSRQIAVKM 155
Query: 292 GICGHHMKL 300
GI H+ +
Sbjct: 156 GIISHNSAV 164
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 35.3 bits (81), Expect = 0.015
Identities = 23/144 (15%), Positives = 42/144 (29%), Gaps = 44/144 (30%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
++E+ SGTG T L + A+D S A H + N ++ ++
Sbjct: 49 DVLELASGTGYWTRHLSGLA--DRVTALDGSAEMIAE----AGRHGLDN-VEFRQQDLF- 100
Query: 202 KGQVKNLQPDLLEQKFDLVVSN--PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK 259
+ PD +++D V +VP +
Sbjct: 101 -----DWTPD---RQWDAVFFAHWLAHVPDDRFEAFWESVR------------------- 133
Query: 260 PICVFGSNYLKPNGSIFLETNHDH 283
+ + P G + DH
Sbjct: 134 -------SAVAPGGVVEFVDVTDH 150
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 35.5 bits (82), Expect = 0.015
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 25/109 (22%)
Query: 138 HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQS----KHACDLTEQNAVMHNVANQLQ 193
R++++G G G +H + +D S A + + A+
Sbjct: 42 VGGLRIVDLGCGFGWFCRWAHEHGAS-YVLGLDLSEKMLARARAAGPDTGITYERAD--- 97
Query: 194 VFHAEIDSKGQVKNLQPDLLEQKFDLVVSN--PPYVPSLDIPKLEPEIA 240
+ + L + FDL S+ YV D+ +L +
Sbjct: 98 ---LD----------KLHLPQDSFDLAYSSLALHYVE--DVARLFRTVH 131
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA
modification enzyme, guanine 26, N(2),N(2)-dimethyltran
structural genomics; 1.90A {Pyrococcus horikoshii} SCOP:
c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Length = 378
Score = 35.6 bits (81), Expect = 0.016
Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 9/96 (9%)
Query: 138 HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197
P +++ S TG I P + D S+ A +L ++N VM N +L+
Sbjct: 46 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRN-VMLNFDGELRESKG 104
Query: 198 EIDSKGQVK--------NLQPDLLEQKFDLVVSNPP 225
KG+ N + F + +P
Sbjct: 105 RAILKGEKTIVINHDDANRLMAERHRYFHFIDLDPF 140
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate,
antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A
{Streptomyces venezuelae}
Length = 239
Score = 35.5 bits (82), Expect = 0.016
Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 25/106 (23%)
Query: 121 ETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180
+ I D + S + ++++ GTG K F ++ S+
Sbjct: 22 DYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSED------ 73
Query: 181 QNAVMHNVANQ----LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVS 222
M A + + ++ ++ + L +KF VVS
Sbjct: 74 ----MLTHARKRLPDATLHQGDM------RDFR---LGRKFSAVVS 106
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 35.4 bits (81), Expect = 0.016
Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 15/107 (14%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKA-IAIDQS----KHACD 177
+ +I + + ++++G G G T+ + + + I D S K A
Sbjct: 23 SDFYKMIDEYHDGER---KLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEV 79
Query: 178 LTEQNAVMH-NVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223
+ E + + NV ++ ++ ++ QK D++ +
Sbjct: 80 IKEGSPDTYKNV--SFKISSSDDFKFLGADSVDK----QKIDMITAV 120
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes}
SCOP: c.66.1.45
Length = 344
Score = 35.5 bits (82), Expect = 0.017
Identities = 16/116 (13%), Positives = 37/116 (31%), Gaps = 22/116 (18%)
Query: 118 PRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPK-------LKAIAID 170
P S + ++ ++ +++ GT + +++ + +D
Sbjct: 111 PDSIGFIVAYLLEKVIQ--KKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVD 168
Query: 171 QSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
+ L A + L H D L L++ D+V+S+ P
Sbjct: 169 DLLIS--LALVGADLQRQKMTL--LHQ--DG------LANLLVD-PVDVVISDLPV 211
>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170,
putative RNA methylase, PSI,MCSG, structu genomics;
1.50A {Listeria monocytogenes str}
Length = 393
Score = 35.7 bits (83), Expect = 0.017
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 162 PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221
L I D ++ +QNAV + + + + QV + Q E ++ +VV
Sbjct: 262 QPLNIIGGDIDARLIEIAKQNAVEAGLGDLITF------RQLQVADFQT---EDEYGVVV 312
Query: 222 SNPPY 226
+NPPY
Sbjct: 313 ANPPY 317
>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure
initiative, midwest center for structural genomics,
MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}
Length = 385
Score = 35.4 bits (82), Expect = 0.022
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 162 PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221
K K D + + D+ +NA + V ++ + + E +F ++
Sbjct: 256 SKFKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGD------ATQFKS---EDEFGFII 306
Query: 222 SNPPY 226
+NPPY
Sbjct: 307 TNPPY 311
>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase,
transferase; HET: SAH; 1.96A {Streptococcus mutans}
Length = 384
Score = 35.4 bits (82), Expect = 0.023
Identities = 9/65 (13%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
Query: 162 PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221
+L D ++ +NA + + +++ + ++++ + + + +++
Sbjct: 255 IQLDISGFDFDGRMVEIARKNAREVGLEDVVKL------KQMRLQDFKTN---KINGVLI 305
Query: 222 SNPPY 226
SNPPY
Sbjct: 306 SNPPY 310
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 34.8 bits (80), Expect = 0.028
Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 25/106 (23%)
Query: 121 ETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180
+ + + + ++++ GTG L F ++ S
Sbjct: 32 DYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSF--GTVEGLELS-------- 81
Query: 181 QNAVMHNVANQ----LQVFHAEIDSKGQVKNLQPDLLEQKFDLVVS 222
A M +A + + H ++ ++ L ++F V
Sbjct: 82 --ADMLAIARRRNPDAVLHHGDM------RDFS---LGRRFSAVTC 116
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics,
PSI-2, protein structure initiative; 2.30A {Haemophilus
influenzae} SCOP: c.66.1.46
Length = 201
Score = 34.1 bits (79), Expect = 0.033
Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 35/132 (26%)
Query: 165 KAIAIDQSKHACDLTEQN-AVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223
K ++ K + ++N + + Q +V + + L+ + FD+V +
Sbjct: 78 KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSS-----LDFLKQPQNQPHFDVVFLD 132
Query: 224 PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC--VFGSNYLKPNGSIFLETNH 281
PP+ N+ + + +N+LKPN I++ET
Sbjct: 133 PPF---------------------------HFNLAEQAISLLCENNWLKPNALIYVETEK 165
Query: 282 DHLDKIKEWLGI 293
D E +
Sbjct: 166 DKPLITPENWTL 177
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 34.1 bits (78), Expect = 0.035
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 16/82 (19%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
++E G GTG +T LL + I+ S+ + ++ + + +
Sbjct: 48 NVLEFGVGTGNLTNKLLLAGRTV--YGIEPSREMRMIAKEKL-----PKEFSITEGDFL- 99
Query: 202 KGQVKNLQPDLLEQKFDLVVSN 223
+ + D +VS
Sbjct: 100 -----SFEVP---TSIDTIVST 113
>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase,
SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus
delbrueckii subsp}
Length = 205
Score = 34.1 bits (79), Expect = 0.037
Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 12/91 (13%)
Query: 133 LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQL 192
+E + P + ++G+G+G + I+ K K +A D S + E+NA ++ + +
Sbjct: 54 IERAMVKPLTVADVGTGSGILAIAAHKLGAK-SVLATDISDESMTAAEENAALNGIYDIA 112
Query: 193 QVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223
++ KFDL+V+N
Sbjct: 113 LQK-----------TSLLADVDGKFDLIVAN 132
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle
structural genomics center for infectio disease; 1.75A
{Burkholderia pseudomallei}
Length = 279
Score = 34.0 bits (79), Expect = 0.042
Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 22/112 (19%)
Query: 125 LIDI-ITDK-LESSNHTP-TRMIEIGSGTGAITISLLKHFP----KLKAIAIDQSKHACD 177
L+D + D + + RM+EIG G GA+T ++ L A+ +D+ D
Sbjct: 25 LVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDR-----D 79
Query: 178 LTEQNAVMHNVANQLQVFHA---EIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
L + L++ D ++ E ++ N PY
Sbjct: 80 LIG--RLEQRFGELLELHAGDALTFD----FGSIARPGDEPSL-RIIGNLPY 124
>1ws6_A Methyltransferase; structural genomics, riken structural
genomics/proteomics initiative, RSGI; 2.50A {Thermus
thermophilus} SCOP: c.66.1.46
Length = 171
Score = 33.6 bits (78), Expect = 0.043
Identities = 13/119 (10%), Positives = 33/119 (27%), Gaps = 34/119 (28%)
Query: 165 KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNP 224
+A+ +++ A L ++N + ++ E+ + F + P
Sbjct: 65 EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGER------FTVAFMAP 118
Query: 225 PYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPIC-VFGSNYLKPNGSIFLETNHD 282
PY +++ + S ++ G L+ D
Sbjct: 119 PY---------------------------AMDLAALFGELLASGLVEAGGLYVLQHPKD 150
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 34.0 bits (78), Expect = 0.044
Identities = 24/143 (16%), Positives = 50/143 (34%), Gaps = 40/143 (27%)
Query: 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
P R++++G G G + +L +A+ +D + D A +A+
Sbjct: 52 QPERVLDLGCGEGWLLRALADRGI--EAVGVDGDRTLVDA----ARAAGAGEVHLASYAQ 105
Query: 199 IDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNII 258
+ + + +DL+ +N L++DI L L+ +
Sbjct: 106 LAE----AKVPVG---KDYDLICAN--------------FALLHQDIIEL------LSAM 138
Query: 259 KPICVFGSNYLKPNGSIFLETNH 281
L P G++ ++T H
Sbjct: 139 -------RTLLVPGGALVIQTLH 154
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 34.0 bits (78), Expect = 0.051
Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 19/87 (21%)
Query: 138 HTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA 197
++++G GTG +T + + ++ + D + A M A Q +
Sbjct: 56 QPGEFILDLGCGTGQLTEKIAQSGAEV--LGTDNA----------ATMIEKARQN---YP 100
Query: 198 EID-SKGQVKNLQPDLLEQKFDLVVSN 223
+ +N + D + D V SN
Sbjct: 101 HLHFDVADARNFRVD---KPLDAVFSN 124
>3khk_A Type I restriction-modification system methylation subunit;
structural genomics, PSI-2, protein structure
initiative; 2.55A {Methanosarcina mazei}
Length = 544
Score = 34.3 bits (79), Expect = 0.052
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 7/45 (15%)
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
N V+ + +A DS L + + D V++NPP+
Sbjct: 302 NMVIRGIDFNFGKKNA--DSF-----LDDQHPDLRADFVMTNPPF 339
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 33.8 bits (77), Expect = 0.063
Identities = 11/85 (12%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
++++ +G G +++ + + K K IAI++ + +N ++ V +++ ++
Sbjct: 128 LVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNM---- 182
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPY 226
+ + E D ++
Sbjct: 183 -----DNRDFPGENIADRILMGYVV 202
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA
methyltransferase, ribosome RNA, SAH, RLML; HET: SAH
OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*
Length = 703
Score = 33.9 bits (78), Expect = 0.065
Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 6/65 (9%)
Query: 162 PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221
D NA + + + + V L L + + V+
Sbjct: 255 YSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKD------VAQLTNPLPKGPYGTVL 308
Query: 222 SNPPY 226
SNPPY
Sbjct: 309 SNPPY 313
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET:
SAM; 2.00A {Escherichia coli}
Length = 200
Score = 33.3 bits (75), Expect = 0.070
Identities = 13/120 (10%), Positives = 36/120 (30%), Gaps = 13/120 (10%)
Query: 104 FRDLTLKMTPPVFIPRSETEEL--IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF 161
+ L + + I S E + ++ + + + +++ G G + +
Sbjct: 12 YNQGQLSIEDLLKIHSSTNERVATLNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNEN 71
Query: 162 PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVV 221
K+ A D + + + N + D+ + +D+V
Sbjct: 72 EKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFL-----------NKESDVYKGTYDVVF 120
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase;
structural genomics, PSI-2, protein structure
initiative; 2.35A {Listeria monocytogenes str}
Length = 253
Score = 33.4 bits (76), Expect = 0.076
Identities = 24/164 (14%), Positives = 47/164 (28%), Gaps = 49/164 (29%)
Query: 121 ETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180
E EL ++ D ++++G G G I +H K K + ID S+
Sbjct: 32 EWHELKKMLPD------FNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTE-- 82
Query: 181 QNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN--PPYVPSLDIPKLEPE 238
A + + I+ + +++V+S+ Y+ + +
Sbjct: 83 --AKRKTTSPVVCYEQKAIE--------DIAIEPDAYNVVLSSLALHYIA--SFDDICKK 130
Query: 239 IALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHD 282
+ LK +GS H
Sbjct: 131 VY--------------------------INLKSSGSFIFSVEHP 148
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 34.0 bits (77), Expect = 0.077
Identities = 16/115 (13%), Positives = 38/115 (33%), Gaps = 8/115 (6%)
Query: 129 ITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAI-AIDQSKHACDLTEQNAVMHN 187
+ S+ + +++ G G+G++ SLL + L+ I +D S + +
Sbjct: 713 ALKHIRESS--ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKL 770
Query: 188 VANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNP--PYVPSLDIPKLEPEIA 240
V A + G + L D+ ++ + ++
Sbjct: 771 NKEACNVKSATL-YDGSILEFDSRL--HDVDIGTCLEVIEHMEEDQACEFGEKVL 822
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 33.2 bits (76), Expect = 0.077
Identities = 25/177 (14%), Positives = 56/177 (31%), Gaps = 42/177 (23%)
Query: 116 FIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHA 175
+ E + + +++E R+ +IG GTG T+ L H+ + +D S+
Sbjct: 14 LMQDVPYPEWVAWVLEQVE----PGKRIADIGCGTGTATLLLADHY---EVTGVDLSEEM 66
Query: 176 CDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKL 235
++ ++ A+ N V ++ L+ L + D +
Sbjct: 67 LEIAQEKAMETNRHVDFWV--------QDMRELE---LPEPVDAITI------------- 102
Query: 236 EPEIALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGSIFLETNHDHLDKIKEWLG 292
L + + L D + L G + + + K++
Sbjct: 103 -----LCDSLNYLQTEADVKQTFDSA----ARLLTDGGKLLFDVH--SPYKMETLFN 148
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 33.5 bits (76), Expect = 0.078
Identities = 8/60 (13%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 141 TRMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
++E+G G+G ++ +L K +++ + N ++ ++I
Sbjct: 112 MDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDI 171
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 33.3 bits (76), Expect = 0.078
Identities = 14/102 (13%), Positives = 38/102 (37%), Gaps = 14/102 (13%)
Query: 122 TEELIDIITDKLESSNHTPTRMI-EIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180
+ ID + + + R + ++ GTG T+ L + + + +D + +
Sbjct: 23 VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVAR 80
Query: 181 QNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVS 222
+ A N+ +++ ++ + + +FD V
Sbjct: 81 RKAKERNL--KIEFLQGDV------LEIA---FKNEFDAVTM 111
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 33.1 bits (76), Expect = 0.081
Identities = 9/83 (10%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
+ +++G+ TG ++L P + + + +L +++ +
Sbjct: 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKP 129
Query: 199 -IDSKGQVKNLQPDLLEQKFDLV 220
+++ + L FD+
Sbjct: 130 ALET---LDELLAAGEAGTFDVA 149
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.095
Identities = 13/47 (27%), Positives = 15/47 (31%), Gaps = 22/47 (46%)
Query: 202 KGQVKNLQPDLLEQKFDLVVSNPPYVP-SLDIPKLEPEIALYEDIKA 247
K +K LQ L K Y S P +A IKA
Sbjct: 19 KQALKKLQASL---K--------LYADDS------APALA----IKA 44
Score = 27.2 bits (59), Expect = 4.4
Identities = 11/57 (19%), Positives = 17/57 (29%), Gaps = 34/57 (59%)
Query: 121 ETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHF-----PKLKAIAIDQS 172
E + L KL++S LK + P A+AI +
Sbjct: 18 EKQAL-----KKLQAS---------------------LKLYADDSAP---ALAIKAT 45
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 32.6 bits (74), Expect = 0.11
Identities = 27/175 (15%), Positives = 56/175 (32%), Gaps = 42/175 (24%)
Query: 121 ETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180
E I+ + L +++++ G G + L + + + +D S+
Sbjct: 20 EYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAR 77
Query: 181 QNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN--PPYVPSLDIPKLEPE 238
+ A + V A L ++ FD V+ + L++ ++ E
Sbjct: 78 EYAKSRESNVEFIVGDAR--------KL--SFEDKTFDYVIFIDSIVHFEPLELNQVFKE 127
Query: 239 IALYEDIKALDGGHDGLNIIKPICVFGSNYLKPNGS-IFLETNH-DHLDKIKEWL 291
+ LKP+G I T+ + L ++KE L
Sbjct: 128 VR--------------------------RVLKPSGKFIMYFTDLRELLPRLKESL 156
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
genomics, SGC, structural genomics consortium; HET: SAH;
1.75A {Homo sapiens} SCOP: c.66.1.42
Length = 241
Score = 32.7 bits (74), Expect = 0.11
Identities = 15/158 (9%), Positives = 46/158 (29%), Gaps = 28/158 (17%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
+ ++ G+G G IT LL + + +D ++ + + +
Sbjct: 80 TSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRV--RNYFC-- 134
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSN--PPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNI 257
+++ P+ +D++ ++ + + +L
Sbjct: 135 ---CGLQDFTPE--PDSYDVIWIQWVIGHLTDQHLAEFLRRCK-----GSL--------- 175
Query: 258 IKPI-CVFGSNYLKPNGSIFLETNHDHLDKIKEWLGIC 294
+P + + + G I + + + I
Sbjct: 176 -RPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRII 212
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure
initiative, NEW research center for structural genomics,
nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Length = 233
Score = 32.6 bits (75), Expect = 0.11
Identities = 11/82 (13%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE- 198
P R++EIG+ G I + + P+ ++I++ + + ++ + +++++ +
Sbjct: 55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDA 114
Query: 199 IDSKGQVKNLQPDLLEQKFDLV 220
+ +++ FD++
Sbjct: 115 LQLGEKLEL------YPLFDVL 130
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding,
RNA methylase, RSMD, SAM-fold, RNA methyltransferase;
1.90A {Mycobacterium tuberculosis}
Length = 189
Score = 32.5 bits (75), Expect = 0.12
Identities = 18/140 (12%), Positives = 41/140 (29%), Gaps = 39/140 (27%)
Query: 148 SGTGAITISLL----KHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKG 203
+G+GA+ + L + ++ + + + +N L + A + +G
Sbjct: 53 AGSGALGLEALSRGAAS-----VLFVESDQRSAAVIARNI------EALGLSGATL-RRG 100
Query: 204 QVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKPICV 263
V + DLV+++PPY + + AL
Sbjct: 101 AVAAVVAAGTTSPVDLVLADPPYNVDSA--------DVDAILAALGTN------------ 140
Query: 264 FGSNYLKPNGSIFLETNHDH 283
+ + +E
Sbjct: 141 ---GWTREGTVAVVERATTC 157
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase,
transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Length = 232
Score = 32.2 bits (74), Expect = 0.14
Identities = 11/81 (13%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
++EIG+ G ++ + I++++ +QN ++ NQ+++
Sbjct: 72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIE--- 128
Query: 200 DSKGQVKNLQPDLLEQKFDLV 220
G ++ ++ +D++
Sbjct: 129 ---GNALEQFENVNDKVYDMI 146
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2,
protein structure initiative; 2.50A {Sulfolobus
solfataricus}
Length = 170
Score = 31.9 bits (73), Expect = 0.14
Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 19/82 (23%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
+++ G G G LL+ KL ID + A ++ + ++
Sbjct: 20 VIVDYGCGNGFYCKYLLEFATKL--YCIDINVIALKEVKEKF-------DSVITLSD--- 67
Query: 202 KGQVKNLQPDLLEQKFDLVVSN 223
++ + D ++
Sbjct: 68 -------PKEIPDNSVDFILFA 82
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 32.2 bits (73), Expect = 0.15
Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 15/102 (14%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
+++ G+G +S+ K I+ S E + +N +
Sbjct: 26 TVLDCGAGGDLPPLSIFVEDG-YKTYGIEISDLQLKKAENFSRENNFKLNISKGDIR--- 81
Query: 202 KGQVKNLQ-PDLLEQKFDLVVSNP--PYVPSLDIPKLEPEIA 240
L D + V S ++ D+ + EI
Sbjct: 82 -----KLPFKD---ESMSFVYSYGTIFHMRKNDVKEAIDEIK 115
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics,
tubercidin, structu genomics, structural genomics
consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB:
4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A*
3qow_A* 3qox_A* 4er3_A* 3sr4_A*
Length = 438
Score = 31.7 bits (71), Expect = 0.29
Identities = 25/194 (12%), Positives = 66/194 (34%), Gaps = 17/194 (8%)
Query: 41 KIPEPENSIQNIMAHIFNTTKIDDV-TIVEKNTEL---------TNDQITHLNKLCECRL 90
+IP+ + +++N + ++T + + + +K Q LN L
Sbjct: 65 EIPDLKLAMENYVLIDYDTKSFESMQRLCDKYNRAIDSIHQLWKGTTQPMKLNTRPSTGL 124
Query: 91 ARMPVQYIIKEWNFRDLTLKMTPPVFIPRSETEELIDIITDKLESSNHTP-TRMIEIGSG 149
R +Q + + D F P E D++ ++ T +++GSG
Sbjct: 125 LRHILQQV-YNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSG 183
Query: 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ 209
G + + + ++++ E ++ + + + +
Sbjct: 184 VGQVVLQVAAATNCKHHYGVEKADIPAKYAETMD--REFRKWMKWYGKKH---AEYTLER 238
Query: 210 PDLLEQKFDLVVSN 223
D L +++ ++N
Sbjct: 239 GDFLSEEWRERIAN 252
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 31.3 bits (71), Expect = 0.30
Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 15/84 (17%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN-QLQVFHAEID 200
R+++IG+G G ++ + + I +D +K ++ A V N + Q AE
Sbjct: 24 RVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE-- 79
Query: 201 SKGQVKNLQ-PDLLEQKFDLVVSN 223
+L PD FD++
Sbjct: 80 ------SLPFPD---DSFDIITCR 94
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Length = 242
Score = 31.1 bits (71), Expect = 0.35
Identities = 12/83 (14%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
+++E+G+ TG +++ P + I D ++ +++++
Sbjct: 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGP 120
Query: 199 -IDSKGQVKNLQPDLLEQKFDLV 220
+D+ + +L + E +FD +
Sbjct: 121 ALDT---LHSLLNEGGEHQFDFI 140
>3lkd_A Type I restriction-modification system methyltransferase subunit;
Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics,
PSI-2; 2.25A {Streptococcus thermophilus}
Length = 542
Score = 31.5 bits (72), Expect = 0.36
Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 6/46 (13%)
Query: 182 NAVMHNV-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
N ++H V + +A D+ + P FD V+ NPPY
Sbjct: 267 NMILHGVPIENQFLHNA--DT---LDEDWPTQEPTNFDGVLMNPPY 307
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella
burnetii}
Length = 225
Score = 31.1 bits (71), Expect = 0.36
Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
++I+IG+ TG I++ PK I D + + L ++ +++++ + +
Sbjct: 65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSP 124
Query: 199 -IDSKGQVKNLQPDLLEQKFDLV 220
D+ + L ++DL+
Sbjct: 125 AKDT---LAELIHAGQAWQYDLI 144
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 31.3 bits (70), Expect = 0.36
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 5/89 (5%)
Query: 142 RMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200
++E GSG+G +++ L K + + I+ + K DL ++N + +L D
Sbjct: 108 TVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD 167
Query: 201 S----KGQVKNLQPDLLEQKFDLVVSNPP 225
+ + D+ FD V +
Sbjct: 168 NVDFIHKDISGATEDIKSLTFDAVALDML 196
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 31.1 bits (70), Expect = 0.38
Identities = 15/85 (17%), Positives = 37/85 (43%), Gaps = 10/85 (11%)
Query: 142 RMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200
++E G G+GA+T+ L P+ + ++ + + L +N +++ +
Sbjct: 96 FIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKL---- 151
Query: 201 SKGQVKNLQPDLLEQKFDLVVSNPP 225
K++ + E+ D V+ + P
Sbjct: 152 -----KDIYEGIEEENVDHVILDLP 171
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAH;
2.00A {Corynebacterium glutamicum atcc 13032}
Length = 203
Score = 30.9 bits (70), Expect = 0.42
Identities = 12/103 (11%), Positives = 33/103 (32%), Gaps = 18/103 (17%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEI 199
++++GSGTG T L + ++ + +L Q + H I
Sbjct: 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQT------HPSVTFHHGTI 93
Query: 200 DSKGQVKNLQPDLLEQKFDLVVSN--PPYVPSLDIPKLEPEIA 240
+++ +++ ++ ++P +
Sbjct: 94 T--------DLSDSPKRWAGLLAWYSLIHMGPGELPDALVALR 128
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium,
SGC, methyltransferase, LOC84291, transferase; HET: SAH;
1.30A {Homo sapiens}
Length = 215
Score = 30.8 bits (69), Expect = 0.49
Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 16/102 (15%)
Query: 121 ETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180
+ ++ +L R++ +G G A++ L ++D S
Sbjct: 28 DFSSFRALLEPELRPE----DRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVV---A 79
Query: 181 QNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVS 222
+ QL+ ++ + D FD+V+
Sbjct: 80 AMQACYAHVPQLRWETMDV--------RKLDFPSASFDVVLE 113
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 31.0 bits (70), Expect = 0.52
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 148 SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207
+G G +I+ K AID + HA +L ++N ++ + +++ V+
Sbjct: 204 AGVGPFSIACKNAK---KIYAIDINPHAIELLKKNIKLNKLEHKIIPIL------SDVRE 254
Query: 208 LQPDLLEQKFDLVVSNPPY 226
+ + V+ N P
Sbjct: 255 VDVK-----GNRVIMNLPK 268
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 30.1 bits (68), Expect = 0.57
Identities = 15/82 (18%), Positives = 28/82 (34%), Gaps = 16/82 (19%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
++++ G G G I L K + D D +Q+ + + ++
Sbjct: 49 KILDAGCGQGRIGGYLSKQG--HDVLGTDLDPILIDYAKQDFP------EARWVVGDLSV 100
Query: 202 KGQVKNLQPDLLEQKFDLVVSN 223
+ E FDL+VS
Sbjct: 101 --------DQISETDFDLIVSA 114
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin,
phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Length = 334
Score = 30.7 bits (70), Expect = 0.61
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
+++G G+G +T ++L+ P + + +D+
Sbjct: 170 SFVDVGGGSGELTKAILQAEPSARGVMLDR 199
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline,
methyltransferase, polyketide, tailoring enzymes,
structural proteomics in E spine; HET: SAM; 2.10A
{Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12
PDB: 1r00_A* 1xds_A* 1xdu_A*
Length = 374
Score = 30.8 bits (70), Expect = 0.63
Identities = 5/31 (16%), Positives = 15/31 (48%)
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
++++G G G + ++ P L+ ++
Sbjct: 184 RHVLDVGGGNGGMLAAIALRAPHLRGTLVEL 214
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A
{Synechocystis SP}
Length = 232
Score = 29.9 bits (68), Expect = 0.76
Identities = 16/83 (19%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
+++EIG G +++ P + IA DQ +A + ++ VA ++ +
Sbjct: 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGP 132
Query: 199 -IDSKGQVKNLQPDLLEQKFDLV 220
+ + ++ L +FDL+
Sbjct: 133 ALAT---LEQLTQGKPLPEFDLI 152
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH;
2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A*
3i5u_A* 3i64_A*
Length = 332
Score = 30.3 bits (69), Expect = 0.84
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 146 IGSGTGAITISLLKHFPKLKAIAIDQ 171
+G G+G + +LL L +D
Sbjct: 176 VGGGSGGLLSALLTAHEDLSGTVLDL 201
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 30.0 bits (68), Expect = 0.94
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
++IG G G++ ++L FP L+ +++
Sbjct: 204 ATAVDIGGGRGSLMAAVLDAFPGLRGTLLER 234
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU
genomics, PSI-2, protein structure initiative; HET: SAH;
2.40A {Micromonospora echinospora}
Length = 348
Score = 29.9 bits (68), Expect = 1.0
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
+ ++G G G +++L+ P L+ + +D+
Sbjct: 186 GTVADVGGGRGGFLLTVLREHPGLQGVLLDR 216
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate,
tailoring enzyme, polyketide, S-adenosyl-L-homocystein;
HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP:
a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Length = 360
Score = 30.0 bits (68), Expect = 1.1
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 146 IGSGTGAITISLLKHFPKLKAIAIDQ 171
+G G G ++ + P + A ++
Sbjct: 190 VGGGKGGFAAAIARRAPHVSATVLEM 215
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural
genomics, protein structure initiative; HET: SAM; 1.98A
{Mycobacterium tuberculosis} SCOP: c.66.1.13
Length = 280
Score = 29.7 bits (66), Expect = 1.1
Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 24/124 (19%)
Query: 142 RMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200
R++E G+G+GA+T+SLL+ P + I+ +Q + +N D
Sbjct: 102 RVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD 161
Query: 201 SKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIKP 260
+L + D V LD+ P L + L G
Sbjct: 162 LA------DSELPDGSVDRAV--------LDML--APWEVLDAVSRLLVAG-------GV 198
Query: 261 ICVF 264
+ V+
Sbjct: 199 LMVY 202
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 29.6 bits (66), Expect = 1.2
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 142 RMIEIGSGTGAITISLLKHF-PKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200
R+I+ G G+GA+ L + K A ++ + L E N + ++ + +I
Sbjct: 115 RIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS 174
Query: 201 SKG 203
Sbjct: 175 EGF 177
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase,
S-adenosyl-L-methionine, RNA metabolism, mRNA
processing, methyltransferase, poxvirus; HET: SAH; 2.70A
{Vaccinia virus}
Length = 302
Score = 29.7 bits (66), Expect = 1.3
Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 6/104 (5%)
Query: 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQ--- 181
LI + K + +++ I G GA +A D A +
Sbjct: 34 LISMYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIA-LLVATDPDADAIARGNERYN 92
Query: 182 --NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223
N+ + + I S V +++ KF+++
Sbjct: 93 KLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQ 136
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 29.2 bits (66), Expect = 1.3
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHA- 197
R+IEIG+ TG ++ P+ K + D S+ ++ + + + N++ +
Sbjct: 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGS 120
Query: 198 --------EIDSKGQVKNLQPDLLEQKFDLV 220
DL
Sbjct: 121 ALETLQVLIDSKSAPSWASDFAFGPSSIDLF 151
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 29.4 bits (66), Expect = 1.3
Identities = 13/107 (12%), Positives = 38/107 (35%), Gaps = 11/107 (10%)
Query: 119 RSETEELIDIITDKLESSNHTP--TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHAC 176
R + + + +L + + +++G+G G L++ F + ++ +
Sbjct: 60 REASLRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQN 118
Query: 177 DLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223
E+ +A+ + V + L+ + +D + S
Sbjct: 119 KRNEEYNNQAGLADNITVKYGSF--------LEIPCEDNSYDFIWSQ 157
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA
capping, mRNA processing, nucleus, phosphoprotein,
RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*
Length = 313
Score = 29.5 bits (65), Expect = 1.4
Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 7/104 (6%)
Query: 125 LIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHA-----CDLT 179
LI +K+ ++++G G G + K K + D + +
Sbjct: 20 LIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRIN-KLVCTDIADVSVKQCQQRYE 78
Query: 180 EQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSN 223
+ + F SK + + D + FD+
Sbjct: 79 DMKNRRDSEYIFSAEFITADSSKELLIDKFRD-PQMCFDICSCQ 121
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding,
tRNA methyltransferase, S-adenosyl-L-methionine, iron,
4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi}
PDB: 2vs1_A*
Length = 425
Score = 29.4 bits (67), Expect = 1.6
Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 14/78 (17%)
Query: 148 SGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKN 207
SG G I L K D ++ A ++ +N ++NV F D
Sbjct: 299 SGVGTFGIYLAKRG--FNVKGFDSNEFAIEMARRNVEINNVDA---EFEVASDR------ 347
Query: 208 LQPDLLEQKFDLVVSNPP 225
++ + FD V+ +PP
Sbjct: 348 ---EVSVKGFDTVIVDPP 362
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 28.8 bits (65), Expect = 1.8
Identities = 11/82 (13%), Positives = 20/82 (24%), Gaps = 6/82 (7%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
T I I G + + +L ID + + F
Sbjct: 57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLL- 115
Query: 199 IDSKGQVKNLQPDLLEQKFDLV 220
+ ++ L + LV
Sbjct: 116 ----SRPLDVMSRLANDSYQLV 133
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation,
transferase transferase inhibitor complex; HET: SAH;
1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A*
3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A*
1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A*
3s68_A* 2zlb_A 2zth_A* ...
Length = 221
Score = 28.8 bits (65), Expect = 1.9
Identities = 10/82 (12%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
P+ ++E+G+ G + + + + + ++ + +T+Q + +++ + +
Sbjct: 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNG- 117
Query: 199 IDSKGQVKNLQPDLLEQKFDLV 220
S+ + L+ D+V
Sbjct: 118 -ASQDLIPQLKKKYDVDTLDMV 138
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel,
structural genomics, PSI-2 structure initiative; HET:
MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP:
c.66.1.51
Length = 332
Score = 29.0 bits (65), Expect = 2.0
Identities = 18/142 (12%), Positives = 43/142 (30%), Gaps = 41/142 (28%)
Query: 150 TGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQ 209
TG ++ + +D SK A ++N V L+ + ++ +
Sbjct: 164 TGVASLVAAAAGAE--VTHVDASKKAIGWAKENQ----VLAGLE--------QAPIRWIC 209
Query: 210 PDLLE---------QKFDLVVSNPP-YVPSLDIPKLEPEIALYEDIKALDGGHDGLNIIK 259
D ++ +D+++++PP + ++ L + I
Sbjct: 210 EDAMKFIQREERRGSTYDIILTDPPKFGRG---TH--------GEVWQLFDHLPLMLDI- 257
Query: 260 PICVFGSNYLKPNGSIFLETNH 281
L P + T +
Sbjct: 258 -----CREILSPKALGLVLTAY 274
>1vlm_A SAM-dependent methyltransferase; possible histamine
methyltransferase, structural genomics, JCSG, protein
struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.66.1.41
Length = 219
Score = 28.6 bits (64), Expect = 2.1
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 6/43 (13%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAV 184
R +EIG GTG + L I ++ S+ ++ + V
Sbjct: 50 RGVEIGVGTGRFAVPL------KIKIGVEPSERMAEIARKRGV 86
>3cc8_A Putative methyltransferase; structural genomics, joint center for
structural genomics, JCSG, protein structure initiative,
PS transferase; 1.64A {Bacillus cereus}
Length = 230
Score = 28.6 bits (64), Expect = 2.3
Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 47/163 (28%)
Query: 133 LESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQL 192
L+ +++IG +GA+ ++ ++ ++ I+ A A +
Sbjct: 26 LKHIKKEWKEVLDIGCSSGALGAAIKENGTRV--SGIEAFPEAA----------EQAKE- 72
Query: 193 QVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPYVPSLDIPKLEPEIALYEDIKALDGGH 252
+ G ++ + E++FD V+ D+ LE H
Sbjct: 73 ---KLDHVVLGDIETMDMPYEEEQFDCVI-------FGDV--LE---------------H 105
Query: 253 --DGLNIIKPICVFGSNYLKPNGSIFLET-NHDHLDKIKEWLG 292
D +I+ + Y+K NG I N H+ + L
Sbjct: 106 LFDPWAVIEKV----KPYIKQNGVILASIPNVSHISVLAPLLA 144
>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1,
S-adenosyl-L-methionine, tRNA Pro structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.55A
{Homo sapiens}
Length = 235
Score = 28.1 bits (63), Expect = 3.0
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 113 PPVFIPRSETEELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAID 170
P F P ++ + D K + + +IG G G + + L FP + ++
Sbjct: 21 PEFFAPLTQNQSHDDPKDKKEKRAQAQVE-FADIGCGYGGLLVELSPLFPDTLILGLE 77
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 28.3 bits (63), Expect = 3.1
Identities = 13/98 (13%), Positives = 33/98 (33%), Gaps = 16/98 (16%)
Query: 127 DIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMH 186
I E ++++G G G T L + KA+ +D S+ ++
Sbjct: 41 STIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGY--KAVGVDISEVMIQKGKERGEGP 98
Query: 187 NVANQLQVFHAEIDSKGQVKNLQ-PDLLEQKFDLVVSN 223
++ +L + ++F+ +++
Sbjct: 99 DL--SFIKGDLS--------SLPFEN---EQFEAIMAI 123
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH;
1.37A {Mesembryanthemum crystallinum}
Length = 237
Score = 28.0 bits (63), Expect = 3.3
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
+ IE+G TG + P K AID + A ++ V +++ ++
Sbjct: 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESD 130
Query: 199 -IDSKGQVKNLQPDLLEQKFDLV 220
+ + + Q E +D
Sbjct: 131 AMLALDNLLQGQES--EGSYDFG 151
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 28.2 bits (63), Expect = 3.4
Identities = 10/83 (12%), Positives = 27/83 (32%), Gaps = 15/83 (18%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVAN-QLQVFHAEID 200
++++ +G G + + K +A D ++ + + + AE
Sbjct: 40 EVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAE-- 95
Query: 201 SKGQVKNLQ-PDLLEQKFDLVVS 222
+ D ++F +V
Sbjct: 96 ------QMPFTD---ERFHIVTC 109
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 27.9 bits (63), Expect = 3.5
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 8/62 (12%)
Query: 165 KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNP 224
A I+ + +N L+ +A + + + L ++V +P
Sbjct: 79 GATLIEMDRAVSQQLIKNL------ATLKAGNARVVNSNAMSFLAQ--KGTPHNIVFVDP 130
Query: 225 PY 226
P+
Sbjct: 131 PF 132
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 28.2 bits (63), Expect = 3.7
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 9/81 (11%)
Query: 142 RMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEIDS 201
R++++G G G + L ++ I S+ + A +AN++ +A+
Sbjct: 64 RVLDVGCGIGKPAVRLATARD-VRVTGISISRPQVNQANARATAAGLANRVTFSYADA-- 120
Query: 202 KGQVKNLQPDLLEQKFDLVVS 222
+ + FD V +
Sbjct: 121 ------MDLPFEDASFDAVWA 135
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A
{Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A*
3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*
Length = 266
Score = 28.2 bits (63), Expect = 3.7
Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 12/82 (14%)
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAEID 200
+++++IGSG G + + + + ID + ++ + N++ +I
Sbjct: 57 SKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSG---NNKIIFEANDI- 111
Query: 201 SKGQVKNLQPDLLEQKFDLVVS 222
L + E FDL+ S
Sbjct: 112 -------LTKEFPENNFDLIYS 126
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH
HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12
PDB: 1fpx_A* 2qyo_A*
Length = 352
Score = 28.2 bits (63), Expect = 3.9
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 146 IGSGTGAITISLLKHFPKLKAIAIDQ 171
+G GTG + + FPKLK I D+
Sbjct: 195 VGGGTGTTAKIICETFPKLKCIVFDR 220
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent
O-methyltransferase; HET: SAH; 1.80A {Lolium perenne}
PDB: 3p9i_A* 3p9k_A*
Length = 364
Score = 28.2 bits (63), Expect = 4.0
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
++++G G GA ++ H+P +K + D
Sbjct: 203 GTLVDVGGGVGATVAAIAAHYPTIKGVNFDL 233
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic
resistance, methyltransferase, transferase; HET: SAM;
2.00A {Micromonospora zionensis} PDB: 3lcu_A*
Length = 281
Score = 27.9 bits (61), Expect = 4.9
Identities = 7/51 (13%), Positives = 15/51 (29%)
Query: 139 TPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTEQNAVMHNVA 189
P + ++ G + + + IA D ++ NV
Sbjct: 132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP 182
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 27.7 bits (62), Expect = 5.2
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 7/31 (22%)
Query: 90 LARMPV-QYIIKEWNFRDLTLKMTPPVFIPR 119
L +PV IIKE +L+++ R
Sbjct: 323 LNDLPVLDSIIKE------SLRLSSASLNIR 347
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation
mutagenesis, regioselectivity transferase; HET: SAH EUG;
1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A*
Length = 368
Score = 27.9 bits (62), Expect = 5.5
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
T ++++G GTGA+ ++ +P + AI D
Sbjct: 205 TTIVDVGGGTGAVASMIVAKYPSINAINFDL 235
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic
resistance, aminoglycoside, S-adenosyl-L-methionine;
HET: SAH; 1.69A {Streptomyces SP}
Length = 218
Score = 27.3 bits (60), Expect = 6.2
Identities = 6/27 (22%), Positives = 14/27 (51%)
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAID 170
+++G+G G + + P +A+D
Sbjct: 32 LDVGTGDGKHPYKVARQNPSRLVVALD 58
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI,
tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}
Length = 258
Score = 27.3 bits (60), Expect = 6.2
Identities = 16/101 (15%), Positives = 37/101 (36%), Gaps = 11/101 (10%)
Query: 126 IDIITDKLESSNHTPTRMIEIGSGTGAITISLLKH-FPKLKAIAIDQSKHACDLTEQNAV 184
+ L+ + R++E G+G+G +T+ L + K + + H E+N
Sbjct: 85 ASAMVTLLDLAP--GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVR 142
Query: 185 MHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPP 225
++ +++ +L E +D V +
Sbjct: 143 AFWQVENVRFHLGKLEEA--------ELEEAAYDGVALDLM 175
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate,
protein-product complex; HET: SAH HCC; 1.82A {Medicago
sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Length = 372
Score = 27.5 bits (61), Expect = 6.3
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 141 TRMIEIGSGTGAITISLLKHFPKLKAIAIDQ 171
+ ++++G G+G ++ +P +K I D
Sbjct: 211 STLVDVGGGSGRNLELIISKYPLIKGINFDL 241
>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold
methyltransferase, tRNA modification,
S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A
{Escherichia coli} PDB: 3dxx_A* 3dxz_A*
Length = 218
Score = 27.3 bits (61), Expect = 6.5
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 144 IEIGSGTGAITISLLKHFPKLKAIAID 170
+EIG G GA +++ K P+ + I+
Sbjct: 39 LEIGFGMGASLVAMAKDRPEQDFLGIE 65
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural
genomics, NEW YORK structura genomics research
consortium; 1.88A {Klebsiella pneumoniae subsp}
Length = 248
Score = 27.3 bits (61), Expect = 6.6
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
R++EIG+ G TI + + P + + ++ H + +N + V ++ +
Sbjct: 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGP 123
Query: 199 -IDSKGQVKNLQPDLLEQKFDLV 220
+ S + FDL+
Sbjct: 124 ALQSLESLGE------CPAFDLI 140
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural
genomics, protein structure initiative, nysgxrc; 2.80A
{Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*
Length = 541
Score = 27.4 bits (61), Expect = 6.6
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 3/45 (6%)
Query: 182 NAVMHNVANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
N ++H++ L A + + K +V +NPP+
Sbjct: 230 NCLLHDIEGNLDHGGAIRLGNTLGSDGENLP---KAHIVATNPPF 271
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia,
iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A
{Methanosarcina barkeri}
Length = 170
Score = 26.6 bits (58), Expect = 7.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 155 ISLLKHFPKLKAIAIDQSKH 174
+S K+F LK IAI++
Sbjct: 125 LSAAKNFSNLKTIAIERGYI 144
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold,
protein-cofactor-substrate complex; HET: SAH FRE; 2.70A
{Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Length = 247
Score = 26.9 bits (60), Expect = 7.6
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
+EIG TG ++ P+ K +A+D +K +L V +++
Sbjct: 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG- 138
Query: 199 IDSKGQVKNLQPD-LLEQKFDLV 220
+ + + D +D +
Sbjct: 139 -PALPVLDEMIKDEKNHGSYDFI 160
>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding
protein, protein structure, N phosphoprotein, nuclear
protein; HET: SAH; 2.00A {Homo sapiens}
Length = 215
Score = 26.9 bits (59), Expect = 7.9
Identities = 9/58 (15%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 123 EELIDIITDKLESSNHTPTRMIEIGSGTGAITISLLKHFPKLKAIAIDQSKHACDLTE 180
+ +D I L + + + G G + S+ ++D CD+ +
Sbjct: 52 LQPVDRIARDLRQRPASLV-VADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDMAQ 108
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta
with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB:
3dul_A*
Length = 223
Score = 26.8 bits (60), Expect = 8.2
Identities = 17/83 (20%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
++EIG+ G TI L + + + ++ S+ D+ N N+ ++++V
Sbjct: 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGL 118
Query: 199 -IDSKGQVKNLQPDLLEQKFDLV 220
+DS ++ ++ + E FD +
Sbjct: 119 ALDS---LQQIENEKYE-PFDFI 137
>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA
methylase, type I restriction enzyme ST protein; HET:
SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP:
c.66.1.45
Length = 445
Score = 27.3 bits (61), Expect = 8.7
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 10/46 (21%)
Query: 182 NAVMHNV-ANQLQVFHAEIDSKGQVKNLQPDLLEQKFDLVVSNPPY 226
N +H + ++ + DS L+ + D++++NPP+
Sbjct: 227 NLYLHGIGTDRSPIVCE--DS------LEKEPST-LVDVILANPPF 263
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 27.3 bits (61), Expect = 8.7
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 7/31 (22%)
Query: 90 LARMPV-QYIIKEWNFRDLTLKMTPPVFIPR 119
PV ++ E TL++T I R
Sbjct: 306 QKNTPVFDSVLWE------TLRLTAAALITR 330
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for
structural genomics, JCSG, protein structure initiative
transferase; 1.90A {Geobacter sulfurreducens pca}
Length = 210
Score = 26.8 bits (60), Expect = 9.0
Identities = 9/82 (10%), Positives = 28/82 (34%), Gaps = 9/82 (10%)
Query: 140 PTRMIEIGSGTGAITISLLKHFPKL-KAIAIDQSKHACDLTEQNAVMHNVANQLQVFHAE 198
P ++ G G G + + + + ID + + + + + +++++
Sbjct: 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVG- 115
Query: 199 IDSKGQVKNLQPDLLEQKFDLV 220
D G + D++
Sbjct: 116 -DPLGIAAGQRD------IDIL 130
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.397
Gapped
Lambda K H
0.267 0.0815 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,977,291
Number of extensions: 301951
Number of successful extensions: 862
Number of sequences better than 10.0: 1
Number of HSP's gapped: 785
Number of HSP's successfully gapped: 192
Length of query: 322
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 228
Effective length of database: 4,077,219
Effective search space: 929605932
Effective search space used: 929605932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)