BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7097
         (63 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XGC|B Chain B, Crystal Structure Of A Designed Heterodimeric Variant
           T-A(I) B Of The Tetracycline Repressor
 pdb|2XGE|B Chain B, Crystal Structure Of A Designed Heterodimeric Variant
           T-A(A) B Of The Tetracycline Repressor
          Length = 211

 Score = 26.6 bits (57), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 7   KNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIY-IKYMIPTYE 54
           ++T    D      EN+  L++E LQI++   GE A ++ ++++I  +E
Sbjct: 153 EHTAALTDRPAAPDENLPPLLREALQIMDSDDGEQAFLHGLEWLIRGFE 201


>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin
          At 1.1 Angstrom Resolution
          Length = 109

 Score = 25.4 bits (54), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 5  LNKNTGDAIDYSQMKRENIGDLVQETLQILERHGG 39
          ++K+  D ID+ ++K+ N    +Q    + E+H G
Sbjct: 41 IHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLG 75


>pdb|1AA2|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin
          Length = 108

 Score = 25.4 bits (54), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 5  LNKNTGDAIDYSQMKRENIGDLVQETLQILERHGG 39
          ++K+  D ID+ ++K+ N    +Q    + E+H G
Sbjct: 40 IHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLG 74


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.138    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,998,940
Number of Sequences: 62578
Number of extensions: 64078
Number of successful extensions: 140
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 137
Number of HSP's gapped (non-prelim): 4
length of query: 63
length of database: 14,973,337
effective HSP length: 34
effective length of query: 29
effective length of database: 12,845,685
effective search space: 372524865
effective search space used: 372524865
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)