BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7097
         (63 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9DAK2|PACRG_MOUSE Parkin coregulated gene protein homolog OS=Mus musculus GN=Pacrg
           PE=1 SV=1
          Length = 241

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 41/58 (70%), Positives = 51/58 (87%)

Query: 1   MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
           ++K++N N+GD IDYSQ KRENIGDL+QETL+  ER+GGEDA I IKYM+PTYESC+L
Sbjct: 183 IFKNMNVNSGDGIDYSQQKRENIGDLIQETLEAFERYGGEDAFINIKYMVPTYESCLL 240


>sp|Q96M98|PACRG_HUMAN Parkin coregulated gene protein OS=Homo sapiens GN=PACRG PE=1 SV=2
          Length = 296

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/51 (72%), Positives = 45/51 (88%)

Query: 8   NTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCIL 58
           N+GD IDYSQ KRENIGDL+QETL+  ER+GGE+A I IKY++PTYESC+L
Sbjct: 245 NSGDGIDYSQQKRENIGDLIQETLEAFERYGGENAFINIKYVVPTYESCLL 295


>sp|Q9D3X5|PACRL_MOUSE PACRG-like protein OS=Mus musculus GN=Pacrgl PE=1 SV=1
          Length = 248

 Score = 32.0 bits (71), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/29 (51%), Positives = 18/29 (62%)

Query: 27  VQETLQILERHGGEDACIYIKYMIPTYES 55
           +   LQ LE+HGG  + I IK  IPTY S
Sbjct: 217 ITSALQKLEQHGGNASLIIIKSKIPTYCS 245


>sp|Q8N7B6|PACRL_HUMAN PACRG-like protein OS=Homo sapiens GN=PACRGL PE=1 SV=2
          Length = 248

 Score = 29.6 bits (65), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%)

Query: 27  VQETLQILERHGGEDACIYIKYMIPTYES 55
           +   LQ LE+HGG  +   IK  IPTY S
Sbjct: 217 ITSALQKLEQHGGSGSLSIIKSKIPTYCS 245


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.138    0.404 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,927,378
Number of Sequences: 539616
Number of extensions: 785183
Number of successful extensions: 1919
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1913
Number of HSP's gapped (non-prelim): 6
length of query: 63
length of database: 191,569,459
effective HSP length: 35
effective length of query: 28
effective length of database: 172,682,899
effective search space: 4835121172
effective search space used: 4835121172
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)