Query psy7097
Match_columns 63
No_of_seqs 86 out of 88
Neff 3.2
Searched_HMMs 46136
Date Fri Aug 16 18:05:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7097.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7097hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3961|consensus 100.0 3.8E-31 8.2E-36 194.5 4.2 57 1-59 206-262 (262)
2 PF10274 ParcG: Parkin co-regu 100.0 6.9E-31 1.5E-35 183.7 1.3 53 1-55 131-183 (183)
3 PF14501 HATPase_c_5: GHKL dom 56.3 20 0.00044 21.2 3.2 27 23-50 10-36 (100)
4 cd08048 TAF11 TATA Binding Pro 53.0 13 0.00029 23.2 2.1 17 23-39 50-66 (85)
5 PF13958 ToxN_toxin: Toxin Tox 48.7 3.4 7.4E-05 28.2 -1.1 25 36-60 73-97 (161)
6 TIGR00370 conserved hypothetic 43.4 28 0.0006 24.5 2.8 43 13-61 8-50 (202)
7 PF04719 TAFII28: hTAFII28-lik 43.3 26 0.00056 22.3 2.4 17 23-39 58-74 (90)
8 PF04405 ScdA_N: Domain of Unk 41.5 36 0.00077 19.7 2.6 20 19-38 1-23 (56)
9 PF04426 Bul1_C: Bul1 C termin 40.1 12 0.00026 27.8 0.5 12 47-58 231-242 (272)
10 cd06410 PB1_UP2 Uncharacterize 40.0 58 0.0013 20.7 3.6 37 19-59 31-67 (97)
11 PF07541 EIF_2_alpha: Eukaryot 39.6 56 0.0012 20.9 3.5 30 25-54 76-106 (114)
12 PF10258 RNA_GG_bind: PHAX RNA 39.5 27 0.0006 21.9 2.0 17 23-40 30-46 (87)
13 PRK02615 thiamine-phosphate py 38.5 25 0.00055 26.8 2.1 24 16-39 77-107 (347)
14 COG1393 ArsC Arsenate reductas 38.4 45 0.00097 21.6 3.0 29 26-54 13-41 (117)
15 PF12651 RHH_3: Ribbon-helix-h 38.3 25 0.00055 19.2 1.6 20 15-34 20-39 (44)
16 PF00367 PTS_EIIB: phosphotran 37.5 47 0.001 17.6 2.5 21 31-58 2-22 (35)
17 PF04639 Baculo_E56: Baculovir 36.7 35 0.00076 26.5 2.6 38 22-59 128-171 (305)
18 PF10209 DUF2340: Uncharacteri 35.2 52 0.0011 22.4 3.0 29 20-48 26-54 (122)
19 PF01910 DUF77: Domain of unkn 35.2 53 0.0012 20.4 2.8 27 22-48 48-74 (92)
20 PF12692 Methyltransf_17: S-ad 33.2 38 0.00082 24.1 2.1 24 23-47 77-100 (160)
21 PF04009 DUF356: Protein of un 32.3 40 0.00087 22.6 2.0 29 25-53 10-38 (107)
22 cd04385 RhoGAP_ARAP RhoGAP_ARA 32.2 54 0.0012 22.0 2.7 32 9-40 1-32 (184)
23 COG5256 TEF1 Translation elong 31.7 50 0.0011 26.6 2.8 37 7-48 152-188 (428)
24 PRK15463 cold shock-like prote 31.5 22 0.00048 21.1 0.7 15 37-51 25-39 (70)
25 PF13348 Y_phosphatase3C: Tyro 30.5 32 0.0007 19.3 1.2 21 24-44 28-49 (68)
26 PF00755 Carn_acyltransf: Chol 30.0 9.1 0.0002 30.1 -1.5 33 19-60 400-434 (591)
27 PF14208 DUF4320: Domain of un 29.8 49 0.0011 21.7 2.1 21 21-41 23-43 (116)
28 PRK15464 cold shock-like prote 28.6 28 0.0006 20.8 0.7 15 37-51 25-39 (70)
29 KOG4603|consensus 28.1 29 0.00063 25.6 0.9 32 5-38 21-53 (201)
30 KOG3719|consensus 27.9 19 0.00042 30.3 -0.0 28 23-59 443-472 (638)
31 cd00447 NusB_Sun RNA binding d 27.4 48 0.001 20.3 1.7 24 22-45 94-119 (129)
32 cd01479 Sec24-like Sec24-like: 27.0 66 0.0014 22.6 2.5 24 17-40 111-134 (244)
33 cd00620 Methyltransferase_Sun 26.1 48 0.001 20.7 1.5 24 22-45 91-116 (126)
34 COG0626 MetC Cystathionine bet 25.8 82 0.0018 24.6 3.0 31 11-44 53-83 (396)
35 PF04230 PS_pyruv_trans: Polys 25.6 1E+02 0.0022 19.4 2.9 28 22-50 1-30 (286)
36 KOG0699|consensus 25.2 54 0.0012 27.1 2.0 40 8-53 123-166 (542)
37 COG2345 Predicted transcriptio 25.1 33 0.00072 24.9 0.7 25 20-44 82-106 (218)
38 PF13730 HTH_36: Helix-turn-he 25.1 66 0.0014 17.0 1.8 14 25-38 40-53 (55)
39 TIGR01951 nusB transcription a 24.6 54 0.0012 20.2 1.5 24 22-45 95-120 (129)
40 PF06751 EutB: Ethanolamine am 23.7 33 0.00071 27.9 0.5 13 46-59 204-216 (444)
41 KOG3219|consensus 23.7 69 0.0015 23.4 2.1 19 21-39 144-162 (195)
42 PF07045 DUF1330: Protein of u 23.6 89 0.0019 17.6 2.2 16 25-40 6-21 (65)
43 COG4718 Phage-related protein 23.6 65 0.0014 21.8 1.8 21 24-44 54-74 (111)
44 PF09651 Cas_APE2256: CRISPR-a 23.4 73 0.0016 20.8 2.1 25 22-46 72-98 (136)
45 PF14066 DUF4256: Protein of u 23.4 52 0.0011 23.8 1.4 14 29-42 36-49 (173)
46 KOG2449|consensus 23.3 31 0.00067 24.6 0.3 42 6-57 23-65 (157)
47 PF11573 Med23: Mediator compl 23.0 40 0.00086 30.6 0.9 34 16-49 1292-1338(1341)
48 COG0694 Thioredoxin-like prote 22.8 63 0.0014 20.7 1.6 26 23-48 10-40 (93)
49 smart00796 AHS1 Allophanate hy 22.3 1.4E+02 0.003 20.8 3.4 45 13-61 13-57 (201)
50 PRK12419 riboflavin synthase s 22.2 1.2E+02 0.0026 21.1 3.0 28 23-51 25-52 (158)
51 PF03511 Fanconi_A: Fanconi an 22.1 89 0.0019 19.4 2.1 15 24-38 33-47 (64)
52 PRK09507 cspE cold shock prote 22.0 47 0.001 19.5 0.8 15 37-51 24-38 (69)
53 PRK13689 hypothetical protein; 22.0 1E+02 0.0022 19.5 2.4 20 21-40 10-29 (75)
54 PF09290 AcetDehyd-dimer: Prok 22.0 2.1E+02 0.0045 19.9 4.1 24 19-42 37-60 (137)
55 PF03235 DUF262: Protein of un 21.9 29 0.00063 22.2 -0.1 14 42-55 4-19 (221)
56 PRK11190 Fe/S biogenesis prote 21.5 1.3E+02 0.0028 21.1 3.1 25 23-47 107-136 (192)
57 PRK09937 stationary phase/star 21.2 53 0.0011 19.8 1.0 15 37-51 22-36 (74)
58 TIGR03341 YhgI_GntY IscR-regul 20.7 1.3E+02 0.0029 20.9 3.0 25 23-47 106-135 (190)
59 PF14028 SpaB_C: SpaB C-termin 20.6 39 0.00084 23.2 0.3 9 34-42 101-109 (283)
60 PRK10943 cold shock-like prote 20.2 42 0.00092 19.7 0.4 15 37-51 24-38 (69)
No 1
>KOG3961|consensus
Probab=99.96 E-value=3.8e-31 Score=194.53 Aligned_cols=57 Identities=60% Similarity=0.994 Sum_probs=54.2
Q ss_pred CCccccCCCCCcccccccccCChhHHHHHHHHHHHHcCCccceeeeeecccCcceeeee
Q psy7097 1 MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILR 59 (63)
Q Consensus 1 ~fk~~n~n~gD~idy~qrk~~nlGdLI~eTL~~lEr~GG~dAfinIKymVPTYeScv~~ 59 (63)
+||+.|.|+||+||| .|++||||||+|||+.||++|||+|||||||||||||||.++
T Consensus 206 ~~k~~n~n~gd~idy--dk~~~igdlI~dTL~~LE~~GGpnAfINIKY~vPtYESC~~~ 262 (262)
T KOG3961|consen 206 TFKNSNVNRGDGIDY--DKNRNIGDLINDTLKHLERSGGPNAFINIKYMVPTYESCCLN 262 (262)
T ss_pred hhcccccccccccCc--cccccHHHHHHHHHHHHHHcCCccceeeEeeccCcchhhcCC
Confidence 599999999999999 578999999999999999999999999999999999999764
No 2
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=99.96 E-value=6.9e-31 Score=183.69 Aligned_cols=53 Identities=68% Similarity=1.105 Sum_probs=51.5
Q ss_pred CCccccCCCCCcccccccccCChhHHHHHHHHHHHHcCCccceeeeeecccCcce
Q psy7097 1 MYKDLNKNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYES 55 (63)
Q Consensus 1 ~fk~~n~n~gD~idy~qrk~~nlGdLI~eTL~~lEr~GG~dAfinIKymVPTYeS 55 (63)
+||++|.|+||+||| ++++++||+|+|||++|||+||+|||+|||||||||||
T Consensus 131 ~f~~k~~n~gd~i~y--~~~~~~~dlI~etL~~lE~~GG~dA~~nIKy~IPTYeS 183 (183)
T PF10274_consen 131 LFKNKNVNLGDGIDY--RKRKNLGDLIQETLELLERNGGPDAFINIKYMIPTYES 183 (183)
T ss_pred HHHhcccCCCccccc--ccccchhHHHHHHHHHHHHhcChhHHHHHHHhCCCCCC
Confidence 589999999999999 78899999999999999999999999999999999998
No 3
>PF14501 HATPase_c_5: GHKL domain
Probab=56.27 E-value=20 Score=21.23 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHHHHcCCccceeeeeecc
Q psy7097 23 IGDLVQETLQILERHGGEDACIYIKYMI 50 (63)
Q Consensus 23 lGdLI~eTL~~lEr~GG~dAfinIKymV 50 (63)
||.|++-+++..++..+ +.+|.|+...
T Consensus 10 l~nlldNAiea~~~~~~-~~~I~i~~~~ 36 (100)
T PF14501_consen 10 LGNLLDNAIEACKKYED-KRFISISIRE 36 (100)
T ss_pred HHHHHHHHHHHHHhcCC-CcEEEEEEEe
Confidence 78999999999999988 9999998765
No 4
>cd08048 TAF11 TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 11 (TAF11) is one of several TAFs that bind TBP and are involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypothes
Probab=52.99 E-value=13 Score=23.20 Aligned_cols=17 Identities=29% Similarity=0.661 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHcCC
Q psy7097 23 IGDLVQETLQILERHGG 39 (63)
Q Consensus 23 lGdLI~eTL~~lEr~GG 39 (63)
+||||++++++-|+.|-
T Consensus 50 VGeivE~A~~V~~~~~~ 66 (85)
T cd08048 50 VGEIVEEARDVQEEWGE 66 (85)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 79999999999999775
No 5
>PF13958 ToxN_toxin: Toxin ToxN, type III toxin-antitoxin system; PDB: 2XD0_X 2XDD_E 2XDB_A.
Probab=48.73 E-value=3.4 Score=28.24 Aligned_cols=25 Identities=28% Similarity=0.428 Sum_probs=18.0
Q ss_pred HcCCccceeeeeecccCcceeeeee
Q psy7097 36 RHGGEDACIYIKYMIPTYESCILRY 60 (63)
Q Consensus 36 r~GG~dAfinIKymVPTYeScv~~~ 60 (63)
..+|.-+-+||.+|||.-++|+...
T Consensus 73 ~~~~~lgvi~lnnMiPVp~~~~~~i 97 (161)
T PF13958_consen 73 EKNKILGVINLNNMIPVPDSCIKKI 97 (161)
T ss_dssp EEEEEEEEEEGGG-EEE-GGGEEE-
T ss_pred CccceEEEEeeccceeCCHHHeeEe
Confidence 3446778899999999999998654
No 6
>TIGR00370 conserved hypothetical protein TIGR00370.
Probab=43.37 E-value=28 Score=24.54 Aligned_cols=43 Identities=19% Similarity=0.179 Sum_probs=28.9
Q ss_pred ccccccccCChhHHHHHHHHHHHHcCCccceeeeeecccCcceeeeeee
Q psy7097 13 IDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYT 61 (63)
Q Consensus 13 idy~qrk~~nlGdLI~eTL~~lEr~GG~dAfinIKymVPTYeScv~~~~ 61 (63)
++|++.-...+-..|+..-+.|++. --|.-+||+|.|....|.
T Consensus 8 v~fg~~~~~~~~~~v~~l~~~l~~~------~gi~e~vP~~~sllv~fd 50 (202)
T TIGR00370 8 IRLGPPINEQVQGIVWAAAAYLEEQ------PGFVECIPGMNNLTVFYD 50 (202)
T ss_pred EEECCcCCHHHHHHHHHHHHHHhcC------CCcEEeecccEEEEEEEC
Confidence 4555443344555666666777765 248899999999987763
No 7
>PF04719 TAFII28: hTAFII28-like protein conserved region; InterPro: IPR006809 The general transcription factor, TFIID, consists of the TATA-binding protein (TBP) associated with a series of TBP-associated factors (TAFs) that together participate in the assembly of the transcription preinitiation complex. The conserved region is found at the C terminus of most member proteins. The crystal structure of hTAFII28 with hTAFII18 shows that this region is involved in the binding of these two subunits. The conserved region contains four alpha helices and three loops arranged as in histone H3 [, ].; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005634 nucleus; PDB: 1BH9_B 1BH8_B.
Probab=43.34 E-value=26 Score=22.33 Aligned_cols=17 Identities=29% Similarity=0.661 Sum_probs=14.5
Q ss_pred hhHHHHHHHHHHHHcCC
Q psy7097 23 IGDLVQETLQILERHGG 39 (63)
Q Consensus 23 lGdLI~eTL~~lEr~GG 39 (63)
+||||++++++-++.|.
T Consensus 58 VGEiVE~A~~Vq~~~~~ 74 (90)
T PF04719_consen 58 VGEIVEEARDVQEEWGE 74 (90)
T ss_dssp HHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 79999999999997663
No 8
>PF04405 ScdA_N: Domain of Unknown function (DUF542) ; InterPro: IPR007500 This is a domain of unknown function found at the N terminus of genes involved in cell wall development and nitrous oxide protection. ScdA is required for normal cell growth and development; mutants have an increased level of peptidoglycan cross-linking and aberrant cellular morphology suggesting a role for ScdA in cell wall metabolism []. NorA1, NorA2, and YtfE are involved in the nitrous oxide response. NorA1 and NorA2, which are similar to YtfE, are co-transcribed with the membrane-bound nitrous oxide (NO) reductases. The genes appear to be involved in NO protection but their function is unknown [, ].
Probab=41.50 E-value=36 Score=19.70 Aligned_cols=20 Identities=25% Similarity=0.677 Sum_probs=15.3
Q ss_pred ccCChhHHHHH---HHHHHHHcC
Q psy7097 19 KRENIGDLVQE---TLQILERHG 38 (63)
Q Consensus 19 k~~nlGdLI~e---TL~~lEr~G 38 (63)
|.+.|||++.+ |-.+|+++|
T Consensus 1 k~~tVgeiv~~~p~~a~vf~~~g 23 (56)
T PF04405_consen 1 KDQTVGEIVAEDPRAARVFRKYG 23 (56)
T ss_pred CcCCHHHHHHHChHHHHHHHHcC
Confidence 45678898875 788888875
No 9
>PF04426 Bul1_C: Bul1 C terminus; InterPro: IPR022794 This domain contains the C terminus of Saccharomyces cerevisiae Bul1. Bul1 binds the ubiquitin ligase Rsp5, via an N-terminal PPSY motif (157-160 in P48524 from SWISSPROT) []. The complex containing Bul1 and Rsp5 is involved in intracellular trafficking of the general amino acid permease Gap1 [], degradation of Rog1 in cooperation with Bul2 and GSK-3 [], and mitochondrial inheritance []. Bul1 may contain HEAT repeats. This domain is found C-terminal to PF04425 from PFAM. This signature also matches the C terminus of some bacterial Methyl-accepting chemotaxis proteins.
Probab=40.09 E-value=12 Score=27.76 Aligned_cols=12 Identities=33% Similarity=1.057 Sum_probs=10.0
Q ss_pred eecccCcceeee
Q psy7097 47 KYMIPTYESCIL 58 (63)
Q Consensus 47 KymVPTYeScv~ 58 (63)
+-.||++|||.+
T Consensus 231 ~tLVPsFqSCl~ 242 (272)
T PF04426_consen 231 KTLVPSFQSCLC 242 (272)
T ss_pred cccCCCchheee
Confidence 448999999984
No 10
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=40.01 E-value=58 Score=20.65 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=27.3
Q ss_pred ccCChhHHHHHHHHHHHHcCCccceeeeeecccCcceeeee
Q psy7097 19 KRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILR 59 (63)
Q Consensus 19 k~~nlGdLI~eTL~~lEr~GG~dAfinIKymVPTYeScv~~ 59 (63)
+..++.||++...+++ +.... +-|||.+|.-+...+.
T Consensus 31 r~~s~~el~~kl~~~~---~~~~~-~~lky~Lp~edld~Li 67 (97)
T cd06410 31 RSISFKELVSKLSELF---GAGVV-VTLKYQLPDEDLDALI 67 (97)
T ss_pred CCCCHHHHHHHHHHHh---CCCCc-eEEEEEcCCCCcceeE
Confidence 4578999999887775 44444 6799999988766443
No 11
>PF07541 EIF_2_alpha: Eukaryotic translation initiation factor 2 alpha subunit; InterPro: IPR011488 In Eukaryota and Archaea, translation initiation factor 2 (eIF2/aIF2), which contains three subunits (alpha, beta and gamma), is pivotal for binding of charged initiator tRNA to the small ribosomal subunit. This entry represents the alpha subunit of both eukaryota and archaeal translation initiator factor 2.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0005850 eukaryotic translation initiation factor 2 complex; PDB: 2QN6_B 3CW2_C 2AHO_B 3QSY_B 3V11_B 2QMU_B 1YZ7_A 1YZ6_A 3AEV_A 1KL9_A ....
Probab=39.64 E-value=56 Score=20.94 Aligned_cols=30 Identities=27% Similarity=0.456 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcCCccceeeeeecc-cCcc
Q psy7097 25 DLVQETLQILERHGGEDACIYIKYMI-PTYE 54 (63)
Q Consensus 25 dLI~eTL~~lEr~GG~dAfinIKymV-PTYe 54 (63)
|.|-++|..-|..+.+|+=+.|+|.- |.|-
T Consensus 76 e~IK~aL~~~~~~~~~~~~v~I~~igaP~Y~ 106 (114)
T PF07541_consen 76 EAIKKALRAAEEASTEDVPVKIKLIGAPRYR 106 (114)
T ss_dssp HHHHHHHHHHHHCCCTTCCEEEEEECTTEEE
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEEECCCeEE
Confidence 57899999999999999999999987 4553
No 12
>PF10258 RNA_GG_bind: PHAX RNA-binding domain; InterPro: IPR019385 The phosphorylated adaptor for RNA export (PHAX) protein transports U3 snoRNA from the nucleus after transcription []. This entry represents the highly conserved U3 snoRNA-binding domain of PHAX, which is characterised by having two pairs of adjacent glycines with the sequence motif GGx12GG.; PDB: 2XC7_A 2W4S_B.
Probab=39.49 E-value=27 Score=21.93 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHHHcCCc
Q psy7097 23 IGDLVQETLQILERHGGE 40 (63)
Q Consensus 23 lGdLI~eTL~~lEr~GG~ 40 (63)
.-+|.+||.+ .|+.||-
T Consensus 30 ~~~l~~et~~-Ie~~GG~ 46 (87)
T PF10258_consen 30 ALELLNETMK-IEKNGGM 46 (87)
T ss_dssp HHHHHHHHHH-HHHCT-E
T ss_pred HHHHHHHHHH-HHHcCCe
Confidence 3578899988 8999993
No 13
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=38.53 E-value=25 Score=26.79 Aligned_cols=24 Identities=33% Similarity=0.580 Sum_probs=20.5
Q ss_pred cccccCChhHHH-------HHHHHHHHHcCC
Q psy7097 16 SQMKRENIGDLV-------QETLQILERHGG 39 (63)
Q Consensus 16 ~qrk~~nlGdLI-------~eTL~~lEr~GG 39 (63)
.|..|.++.+++ ||.|.+||-+|.
T Consensus 77 ~e~~r~~~~~~~~an~~r~qea~rvlee~~k 107 (347)
T PRK02615 77 QEEQRSTLEQVVSANAARVQEALRVLEEYGK 107 (347)
T ss_pred hhhcccCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 456778999997 899999999885
No 14
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=38.41 E-value=45 Score=21.59 Aligned_cols=29 Identities=31% Similarity=0.285 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHcCCccceeeeeecccCcc
Q psy7097 26 LVQETLQILERHGGEDACIYIKYMIPTYE 54 (63)
Q Consensus 26 LI~eTL~~lEr~GG~dAfinIKymVPTYe 54 (63)
-...|+..||.||-+=.|++++-.-||=+
T Consensus 13 t~rka~~~L~~~gi~~~~~~y~~~~~s~~ 41 (117)
T COG1393 13 TCRKALAWLEEHGIEYTFIDYLKTPPSRE 41 (117)
T ss_pred HHHHHHHHHHHcCCCcEEEEeecCCCCHH
Confidence 46789999999999999999998888743
No 15
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=38.32 E-value=25 Score=19.20 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=16.4
Q ss_pred ccccccCChhHHHHHHHHHH
Q psy7097 15 YSQMKRENIGDLVQETLQIL 34 (63)
Q Consensus 15 y~qrk~~nlGdLI~eTL~~l 34 (63)
++...+.+..+||.|+|+.+
T Consensus 20 ls~~t~i~~S~Ll~eAle~~ 39 (44)
T PF12651_consen 20 LSEETGIPKSKLLREALEDY 39 (44)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 45677788999999999865
No 16
>PF00367 PTS_EIIB: phosphotransferase system, EIIB; InterPro: IPR018113 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred to enzyme-I (EI) of PTS which in turn transfers it to a phosphoryl carrier protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease which consists of at least three structurally distinct domains (IIA, IIB, and IIC) [] which can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA) carries the first permease-specific phoshorylation site, a histidine, which is phosphorylated by phospho-HPr. The second domain (IIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the permease. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate in a process catalyzed by the IIC domain; this process is coupled to the transmembrane transport of the sugar. This entry covers the phosphorylation site of EIIB domains. ; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity; PDB: 3IPJ_B 3BP3_A 1O2F_B 3BP8_C 1IBA_A.
Probab=37.46 E-value=47 Score=17.62 Aligned_cols=21 Identities=43% Similarity=0.675 Sum_probs=13.9
Q ss_pred HHHHHHcCCccceeeeeecccCcceeee
Q psy7097 31 LQILERHGGEDACIYIKYMIPTYESCIL 58 (63)
Q Consensus 31 L~~lEr~GG~dAfinIKymVPTYeScv~ 58 (63)
-+++|-.||.+ ||+-+ ..|+.
T Consensus 2 ~~il~~lGG~~---NI~~v----~~C~T 22 (35)
T PF00367_consen 2 KQILEALGGKE---NIKSV----TNCAT 22 (35)
T ss_dssp HHHHHHCTTCC---CEEEE----EE-SS
T ss_pred hHHHHHhCCHH---HHHHH----hcCcc
Confidence 36889999998 56644 35663
No 17
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=36.70 E-value=35 Score=26.52 Aligned_cols=38 Identities=26% Similarity=0.436 Sum_probs=25.8
Q ss_pred ChhHHHHHHHHHHHHcCCccce------eeeeecccCcceeeee
Q psy7097 22 NIGDLVQETLQILERHGGEDAC------IYIKYMIPTYESCILR 59 (63)
Q Consensus 22 nlGdLI~eTL~~lEr~GG~dAf------inIKymVPTYeScv~~ 59 (63)
+.++|||+-.+.|-|+||.=-+ -+|.-.+=.|.||-+.
T Consensus 128 ~~a~LvqdIi~AlNrTGGSyy~~G~nggd~ie~ClL~~RtC~~~ 171 (305)
T PF04639_consen 128 SAATLVQDIIDALNRTGGSYYYRGNNGGDNIESCLLRYRTCGMD 171 (305)
T ss_pred EHHHHHHHHHHHHHhCCCeeEEEccCCCceeeeeeEeccccCCC
Confidence 5689999999999999985221 1455555555555443
No 18
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=35.22 E-value=52 Score=22.36 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=26.5
Q ss_pred cCChhHHHHHHHHHHHHcCCccceeeeee
Q psy7097 20 RENIGDLVQETLQILERHGGEDACIYIKY 48 (63)
Q Consensus 20 ~~nlGdLI~eTL~~lEr~GG~dAfinIKy 48 (63)
...++||++...+.....||--+|.|.+|
T Consensus 26 ~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~y 54 (122)
T PF10209_consen 26 DTTVKDLKEQVKQDIKTRPGLPPFRNVKY 54 (122)
T ss_pred cCcHHHHHHHHHHHHhcCCCCCCceeeec
Confidence 46789999999999999999999999865
No 19
>PF01910 DUF77: Domain of unknown function DUF77; InterPro: IPR002767 This entry contains several hypothetical proteins of unknown function found in archaebacteria, eukaryotes and eubacteria. The structures of YBL001c from Saccharomyces cerevisiae and its homologue MTH1187 from the archaea Methanobacterium thermoautotrophicum have been determined []. These proteins have a ferredoxin-like alpha/beta sandwich structure with anti-parallel beta-sheets. Generally, they have two domains that form a single beta-sheet dimer, where two dimers pack sheet-to-sheet into a tetramer, some proteins having an extra C-terminal helix. ; PDB: 1LXJ_A 1YQH_A 2EKY_G 2EPI_A 1VK8_D 2IBO_C 1LXN_B.
Probab=35.19 E-value=53 Score=20.38 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.8
Q ss_pred ChhHHHHHHHHHHHHcCCccceeeeee
Q psy7097 22 NIGDLVQETLQILERHGGEDACIYIKY 48 (63)
Q Consensus 22 nlGdLI~eTL~~lEr~GG~dAfinIKy 48 (63)
.+.++|.+..+.+.+.|.+..+.+||.
T Consensus 48 ev~~~i~~~~e~~~~~G~~Rv~t~ikI 74 (92)
T PF01910_consen 48 EVMALIKEAHEALFEAGAKRVVTVIKI 74 (92)
T ss_dssp HHHHHHHHHHHHHHCTTSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence 377889999999999999999999986
No 20
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=33.17 E-value=38 Score=24.14 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHHcCCccceeeee
Q psy7097 23 IGDLVQETLQILERHGGEDACIYIK 47 (63)
Q Consensus 23 lGdLI~eTL~~lEr~GG~dAfinIK 47 (63)
+|| |.|||..+++.|..-|+++.-
T Consensus 77 lGd-i~~tl~~~~~~g~~a~laHaD 100 (160)
T PF12692_consen 77 LGD-IRETLPALARFGAGAALAHAD 100 (160)
T ss_dssp ES--HHHHHHHHHHH-S-EEEEEE-
T ss_pred ecc-HHHHhHHHHhcCCceEEEEee
Confidence 344 689999999999999998753
No 21
>PF04009 DUF356: Protein of unknown function (DUF356); InterPro: IPR007154 Members of this family are around 120 amino acids in length and are found in some archaebacteria. The function of this family is unknown. However it contains a conserved motif IHPPAH that may be involved in its function.
Probab=32.26 E-value=40 Score=22.58 Aligned_cols=29 Identities=34% Similarity=0.458 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCccceeeeeecccCc
Q psy7097 25 DLVQETLQILERHGGEDACIYIKYMIPTY 53 (63)
Q Consensus 25 dLI~eTL~~lEr~GG~dAfinIKymVPTY 53 (63)
+-+.-+|.-||||||-.--..=|.|.|.+
T Consensus 10 ~K~~~ALaDleRh~~l~i~gkPrii~p~~ 38 (107)
T PF04009_consen 10 DKILNALADLERHGGLKIRGKPRIIPPEY 38 (107)
T ss_pred HHHHHHHHHHHHhcCCeEecCCcccChHH
Confidence 44667899999999987777777777755
No 22
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=32.16 E-value=54 Score=21.98 Aligned_cols=32 Identities=22% Similarity=0.439 Sum_probs=27.7
Q ss_pred CCCcccccccccCChhHHHHHHHHHHHHcCCc
Q psy7097 9 TGDAIDYSQMKRENIGDLVQETLQILERHGGE 40 (63)
Q Consensus 9 ~gD~idy~qrk~~nlGdLI~eTL~~lEr~GG~ 40 (63)
.|+.+++-|..+..+--.|...++.||++|..
T Consensus 1 ~~~~l~~~~~~~~~iP~~v~~~i~~l~~~g~~ 32 (184)
T cd04385 1 DGPALEDQQLTDNDIPVIVDKCIDFITQHGLM 32 (184)
T ss_pred CCccHHHhhhCCCCCChHHHHHHHHHHHhCCC
Confidence 37788888888899999999999999999864
No 23
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=31.73 E-value=50 Score=26.64 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=28.9
Q ss_pred CCCCCcccccccccCChhHHHHHHHHHHHHcCCccceeeeee
Q psy7097 7 KNTGDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKY 48 (63)
Q Consensus 7 ~n~gD~idy~qrk~~nlGdLI~eTL~~lEr~GG~dAfinIKy 48 (63)
.|-+|.++|+|.| ..++..+...+++..|=..+ |+++
T Consensus 152 vNKMD~v~wde~r---f~ei~~~v~~l~k~~G~~~~--~v~F 188 (428)
T COG5256 152 VNKMDLVSWDEER---FEEIVSEVSKLLKMVGYNPK--DVPF 188 (428)
T ss_pred EEcccccccCHHH---HHHHHHHHHHHHHHcCCCcc--CCeE
Confidence 3778999999866 77888888888888887766 4444
No 24
>PRK15463 cold shock-like protein CspF; Provisional
Probab=31.55 E-value=22 Score=21.12 Aligned_cols=15 Identities=20% Similarity=0.226 Sum_probs=12.0
Q ss_pred cCCccceeeeeeccc
Q psy7097 37 HGGEDACIYIKYMIP 51 (63)
Q Consensus 37 ~GG~dAfinIKymVP 51 (63)
.||+|+|++|+-.-.
T Consensus 25 ~g~~DvFvH~sal~~ 39 (70)
T PRK15463 25 DGRKDVQVHISALNL 39 (70)
T ss_pred CCCccEEEEehhhhh
Confidence 478999999987653
No 25
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=30.46 E-value=32 Score=19.30 Aligned_cols=21 Identities=14% Similarity=0.431 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHH-HcCCcccee
Q psy7097 24 GDLVQETLQILE-RHGGEDACI 44 (63)
Q Consensus 24 GdLI~eTL~~lE-r~GG~dAfi 44 (63)
.+-+..+|+.++ ++||.++|.
T Consensus 28 ~e~l~~~l~~i~~~yGs~e~Yl 49 (68)
T PF13348_consen 28 PEYLEAALDAIDERYGSVENYL 49 (68)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHH
Confidence 456778888887 699999886
No 26
>PF00755 Carn_acyltransf: Choline/Carnitine o-acyltransferase; InterPro: IPR000542 A number of eukaryotic acetyltransferases can, on the basis of sequence similarities, be grouped together into a family. These enzymes include: Choline o-acetyltransferase 2.3.1.6 from EC, an enzyme that catalyses the biosynthesis of the neurotransmitter acetylcholine []. Carnitine o-acetyltransferase 2.3.1.7 from EC []. Peroxisomal carnitine octanoyltransferase 2.3.1.137 from EC, a fatty acid beta-oxidation pathway enzyme which is involved in the transport of medium-chain acyl-coenzyme A's from peroxisome to mitochondria []. Mitochondrial carnitine palmitoyltransferases I and II 2.3.1.21 from EC (CPT), enzymes involved in fatty acid metabolism and transport []. Mycoplasma pneumoniae putative acetyltransferase C09_orf600. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 2DEB_B 2H4T_A 2FW3_A 2RCU_B 2FYO_A 1S5O_A 1NM8_A 1T7Q_B 2H3W_B 1NDI_B ....
Probab=29.96 E-value=9.1 Score=30.14 Aligned_cols=33 Identities=33% Similarity=0.421 Sum_probs=17.2
Q ss_pred ccCChhHHHHHHHHHH--HHcCCccceeeeeecccCcceeeeee
Q psy7097 19 KRENIGDLVQETLQIL--ERHGGEDACIYIKYMIPTYESCILRY 60 (63)
Q Consensus 19 k~~nlGdLI~eTL~~l--Er~GG~dAfinIKymVPTYeScv~~~ 60 (63)
.+.+--..||=+||+- .-|| ..+||||||.++.
T Consensus 400 ~~~spDa~iQ~alQLA~~r~~g---------~~~~tyEs~stR~ 434 (591)
T PF00755_consen 400 FKVSPDAFIQMALQLAYYRLHG---------KFPPTYESASTRH 434 (591)
T ss_dssp TTS-HHHHHHHHHHHHHHHHHS---------S---EEEEEE-TT
T ss_pred CCCCccHHHHHHHHHHHHHHcC---------CcchhhhhhhHHH
Confidence 3445556677666652 2333 4579999998763
No 27
>PF14208 DUF4320: Domain of unknown function (DUF4320)
Probab=29.77 E-value=49 Score=21.65 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=17.9
Q ss_pred CChhHHHHHHHHHHHHcCCcc
Q psy7097 21 ENIGDLVQETLQILERHGGED 41 (63)
Q Consensus 21 ~nlGdLI~eTL~~lEr~GG~d 41 (63)
..+-+.-+|++...|++||-.
T Consensus 23 ~ql~~~a~e~v~~aE~~Gg~~ 43 (116)
T PF14208_consen 23 QQLNTFAQELVRQAEREGGVT 43 (116)
T ss_pred HHHHHHHHHHHHHHHHhCCCc
Confidence 347788899999999999975
No 28
>PRK15464 cold shock-like protein CspH; Provisional
Probab=28.63 E-value=28 Score=20.84 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=12.0
Q ss_pred cCCccceeeeeeccc
Q psy7097 37 HGGEDACIYIKYMIP 51 (63)
Q Consensus 37 ~GG~dAfinIKymVP 51 (63)
-||+|+|++|+-.-+
T Consensus 25 ~g~~DvFvH~s~l~~ 39 (70)
T PRK15464 25 DGRKEVQVHISAFTP 39 (70)
T ss_pred CCCccEEEEehhehh
Confidence 478999999987753
No 29
>KOG4603|consensus
Probab=28.09 E-value=29 Score=25.55 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=23.7
Q ss_pred ccCCCCCcccccccccCCh-hHHHHHHHHHHHHcC
Q psy7097 5 LNKNTGDAIDYSQMKRENI-GDLVQETLQILERHG 38 (63)
Q Consensus 5 ~n~n~gD~idy~qrk~~nl-GdLI~eTL~~lEr~G 38 (63)
+--|+-|..+|=|+ .+| +..|++||+.|+..|
T Consensus 21 rP~ssq~v~~~lq~--e~lgktavqk~Ld~La~~G 53 (201)
T KOG4603|consen 21 RPYSSQDVFGNLQR--EHLGKTAVQKTLDQLAQQG 53 (201)
T ss_pred CCCchHHHHHHHHH--HhccchHHHHHHHHHHHcC
Confidence 34466677777765 444 478999999999988
No 30
>KOG3719|consensus
Probab=27.94 E-value=19 Score=30.31 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=17.8
Q ss_pred hhHHHHHHHHH--HHHcCCccceeeeeecccCcceeeee
Q psy7097 23 IGDLVQETLQI--LERHGGEDACIYIKYMIPTYESCILR 59 (63)
Q Consensus 23 lGdLI~eTL~~--lEr~GG~dAfinIKymVPTYeScv~~ 59 (63)
-..+||-.+|+ +-.+| -||+|||||...
T Consensus 443 PDs~vQlafQ~A~~alYg---------~~v~~yEscsT~ 472 (638)
T KOG3719|consen 443 PDSVVQLAFQMAYYALYG---------RFVFTYESCSTA 472 (638)
T ss_pred cHHHHHHHHHHHHHHHhc---------ccccccchhhHH
Confidence 34566666665 23333 489999999853
No 31
>cd00447 NusB_Sun RNA binding domain of NusB (N protein-Utilization Substance B) and Sun (also known as RrmB or Fmu) proteins. This family includes two orthologous groups exemplified by the transcription termination factor NusB and the N-terminal domain of the rRNA-specific 5-methylcytidine transferase (m5C-methyltransferase) Sun. The NusB protein plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation. The m5C-methyltransferase Sun shares the
Probab=27.44 E-value=48 Score=20.34 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=18.5
Q ss_pred ChhHHHHHHHHHHHHcCCccc--eee
Q psy7097 22 NIGDLVQETLQILERHGGEDA--CIY 45 (63)
Q Consensus 22 nlGdLI~eTL~~lEr~GG~dA--fin 45 (63)
.---.|.|+.++-.+.+++.+ |+|
T Consensus 94 p~~~vineaVelak~~~~~~~~~fVN 119 (129)
T cd00447 94 PPPVAINEAVELAKRFGDDDSAKFVN 119 (129)
T ss_pred CchhHHHHHHHHHHHHCCCCcchhHH
Confidence 456789999999998887765 554
No 32
>cd01479 Sec24-like Sec24-like: Protein and membrane traffic in eukaryotes is mediated by at least in part by the budding and fusion of intracellular transport vesicles that selectively carry cargo proteins and lipids from donor to acceptor organelles. The two main classes of vesicular carriers within the endocytic and the biosynthetic pathways are COP- and clathrin-coated vesicles. Formation of COPII vesicles requires the ordered assembly of the coat built from several cytosolic components GTPase Sar1, complexes of Sec23-Sec24 and Sec13-Sec31. The process is initiated by the conversion of GDP to GTP by the GTPase Sar1 which then recruits the heterodimeric complex of Sec23 and Sec24. This heterodimeric complex generates the pre-budding complex. The final step leading to membrane deformation and budding of COPII-coated vesicles is carried by the heterodimeric complex Sec13-Sec31. The members of this CD belong to the Sec23-like family. Sec 24 is very similar to Sec23. The Sec23 and Sec24
Probab=27.03 E-value=66 Score=22.58 Aligned_cols=24 Identities=21% Similarity=0.493 Sum_probs=20.7
Q ss_pred ccccCChhHHHHHHHHHHHHcCCc
Q psy7097 17 QMKRENIGDLVQETLQILERHGGE 40 (63)
Q Consensus 17 qrk~~nlGdLI~eTL~~lEr~GG~ 40 (63)
++....+|..++-++.+|+..||.
T Consensus 111 ~~~~~c~G~Al~~A~~lL~~~GGk 134 (244)
T cd01479 111 KETESALGPALQAAFLLLKETGGK 134 (244)
T ss_pred CCCcccHHHHHHHHHHHHHhcCCE
Confidence 345688999999999999999984
No 33
>cd00620 Methyltransferase_Sun N-terminal RNA binding domain of the methyltransferase Sun. The rRNA-specific 5-methylcytidine transferase Sun, also known as RrmB or Fmu shares the RNA-binding non-catalytic domain with the transcription termination factor NusB. The precise biological role of this domain in Sun is unknown, although it is likely to be involved in sequence-specific RNA binding. The C-terminal methyltransferase domain of Sun has been shown to catalyze formation of m5C at position 967 of 16S rRNA in Escherichia coli.
Probab=26.07 E-value=48 Score=20.65 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=18.3
Q ss_pred ChhHHHHHHHHHHHHcCCccc--eee
Q psy7097 22 NIGDLVQETLQILERHGGEDA--CIY 45 (63)
Q Consensus 22 nlGdLI~eTL~~lEr~GG~dA--fin 45 (63)
.-...|+|+.++-.+.|++.+ |+|
T Consensus 91 p~~avvneaVelak~~~~~~~~~fVN 116 (126)
T cd00620 91 PPHAAVDETVEIAKIRKDLGRAGLVN 116 (126)
T ss_pred CchHHHHHHHHHHHHhCCCchhhHHH
Confidence 345688999999999988776 544
No 34
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=25.75 E-value=82 Score=24.64 Aligned_cols=31 Identities=42% Similarity=0.601 Sum_probs=23.3
Q ss_pred CcccccccccCChhHHHHHHHHHHHHcCCcccee
Q psy7097 11 DAIDYSQMKRENIGDLVQETLQILERHGGEDACI 44 (63)
Q Consensus 11 D~idy~qrk~~nlGdLI~eTL~~lEr~GG~dAfi 44 (63)
.+-+|+- .+..--+..++.+-.|| ||++||.
T Consensus 53 ~~~~Y~R-~~nPT~~~lE~~~a~LE--g~~~~~a 83 (396)
T COG0626 53 GGYDYSR-TGNPTRDALEEALAELE--GGEDAFA 83 (396)
T ss_pred cCccccc-CCCccHHHHHHHHHHhh--CCCcEEE
Confidence 3567774 34556678899999999 9999874
No 35
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=25.62 E-value=1e+02 Score=19.44 Aligned_cols=28 Identities=43% Similarity=0.543 Sum_probs=18.7
Q ss_pred ChhHH--HHHHHHHHHHcCCccceeeeeecc
Q psy7097 22 NIGDL--VQETLQILERHGGEDACIYIKYMI 50 (63)
Q Consensus 22 nlGdL--I~eTL~~lEr~GG~dAfinIKymV 50 (63)
|+||. .+.+++.|++++ +++-+-+-..-
T Consensus 1 N~GD~~i~~~~~~~l~~~~-~~~~~~~~~~~ 30 (286)
T PF04230_consen 1 NIGDDLILEALLKLLKKHG-PDAEIIIFSPD 30 (286)
T ss_pred CchHHHHHHHHHHHHHhcC-CceEEEEeCCC
Confidence 45553 467899999999 77755444333
No 36
>KOG0699|consensus
Probab=25.24 E-value=54 Score=27.07 Aligned_cols=40 Identities=28% Similarity=0.498 Sum_probs=27.8
Q ss_pred CCCCcccccccccCChhHHHHHH----HHHHHHcCCccceeeeeecccCc
Q psy7097 8 NTGDAIDYSQMKRENIGDLVQET----LQILERHGGEDACIYIKYMIPTY 53 (63)
Q Consensus 8 n~gD~idy~qrk~~nlGdLI~eT----L~~lEr~GG~dAfinIKymVPTY 53 (63)
--++..||. .....+||+|. -++|+|+||... =|-|.|.|
T Consensus 123 ~~aeaDd~d---eed~a~l~EEa~~pl~ElL~rY~G~~~---hK~~~sp~ 166 (542)
T KOG0699|consen 123 AGAEADDED---EEDRADLIEEASVPLAELLKRYGGAGV---HKSLLSPF 166 (542)
T ss_pred ccccccccc---hHHHHHHHHhccCcHHHHHHHhcCCCc---cccccChh
Confidence 345667776 35678899885 489999999654 35565544
No 37
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=25.10 E-value=33 Score=24.94 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=22.3
Q ss_pred cCChhHHHHHHHHHHHHcCCcccee
Q psy7097 20 RENIGDLVQETLQILERHGGEDACI 44 (63)
Q Consensus 20 ~~nlGdLI~eTL~~lEr~GG~dAfi 44 (63)
....++|+...|..||..||+|++-
T Consensus 82 ~~~y~~l~~~~l~~l~~~~G~~~l~ 106 (218)
T COG2345 82 PKRYGELALALLDALEETGGEEALN 106 (218)
T ss_pred chhhHHHHHHHHHHHHHhccHHHHH
Confidence 4678999999999999999999864
No 38
>PF13730 HTH_36: Helix-turn-helix domain
Probab=25.10 E-value=66 Score=17.00 Aligned_cols=14 Identities=36% Similarity=0.532 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHcC
Q psy7097 25 DLVQETLQILERHG 38 (63)
Q Consensus 25 dLI~eTL~~lEr~G 38 (63)
.=|+..|..||..|
T Consensus 40 ~Tv~~~i~~L~~~G 53 (55)
T PF13730_consen 40 RTVQRAIKELEEKG 53 (55)
T ss_pred HHHHHHHHHHHHCc
Confidence 45788899999887
No 39
>TIGR01951 nusB transcription antitermination factor NusB. A transcription antitermination complex active in many bacteria was designated N-utilization substance (Nus) in E. coli because of its interaction with phage lambda protein N. This model represents NusB. Other components are NusA and NusG. NusE is, in fact, ribosomal protein S10.
Probab=24.60 E-value=54 Score=20.25 Aligned_cols=24 Identities=17% Similarity=0.419 Sum_probs=18.0
Q ss_pred ChhHHHHHHHHHHHHcCCccc--eee
Q psy7097 22 NIGDLVQETLQILERHGGEDA--CIY 45 (63)
Q Consensus 22 nlGdLI~eTL~~lEr~GG~dA--fin 45 (63)
.-...|.|+.++-.+++++.+ |+|
T Consensus 95 p~~avineaV~lak~~~~~~~~~fVN 120 (129)
T TIGR01951 95 PYKVVINEAVELAKKFGDEDSHKFVN 120 (129)
T ss_pred CCcchHHHHHHHHHHHCCCCchhhHH
Confidence 456789999999988877664 554
No 40
>PF06751 EutB: Ethanolamine ammonia lyase large subunit (EutB); InterPro: IPR010628 This family consists of several bacterial ethanolamine ammonia lyase large subunit (EutB) proteins. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia. The enzyme is a heterodimer composed of subunits of Mr approximately 55,000 (EutB) and 35,000 (EutC) [].; GO: 0008851 ethanolamine ammonia-lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3ABQ_C 3ABS_C 3AO0_A 3ABR_A 3ABO_C 3ANY_A 2QEZ_B.
Probab=23.71 E-value=33 Score=27.89 Aligned_cols=13 Identities=46% Similarity=1.022 Sum_probs=8.1
Q ss_pred eeecccCcceeeee
Q psy7097 46 IKYMIPTYESCILR 59 (63)
Q Consensus 46 IKymVPTYeScv~~ 59 (63)
-+|-||| |+||+-
T Consensus 204 ~~~~IPt-Q~CVL~ 216 (444)
T PF06751_consen 204 QRFEIPT-QSCVLA 216 (444)
T ss_dssp HHCT-SS--EEE-S
T ss_pred HHhCCCC-cceEee
Confidence 4788999 899974
No 41
>KOG3219|consensus
Probab=23.67 E-value=69 Score=23.37 Aligned_cols=19 Identities=32% Similarity=0.585 Sum_probs=16.2
Q ss_pred CChhHHHHHHHHHHHHcCC
Q psy7097 21 ENIGDLVQETLQILERHGG 39 (63)
Q Consensus 21 ~nlGdLI~eTL~~lEr~GG 39 (63)
.=+||+|+++|.+-|..|=
T Consensus 144 vFVGEvVEeAl~V~~~~~e 162 (195)
T KOG3219|consen 144 VFVGEVVEEALDVREEWGE 162 (195)
T ss_pred HhHHHHHHHHHHHHHHhcc
Confidence 3479999999999998873
No 42
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=23.64 E-value=89 Score=17.64 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHcCCc
Q psy7097 25 DLVQETLQILERHGGE 40 (63)
Q Consensus 25 dLI~eTL~~lEr~GG~ 40 (63)
+-...+..+||++||+
T Consensus 6 ~Y~~~~~~~l~~~GG~ 21 (65)
T PF07045_consen 6 EYREAVPPILEKYGGR 21 (65)
T ss_dssp HHHHHHHHHHHHTT-E
T ss_pred HHHHHHHHHHHHcCCE
Confidence 4455677889999997
No 43
>COG4718 Phage-related protein [Function unknown]
Probab=23.56 E-value=65 Score=21.76 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHcCCcccee
Q psy7097 24 GDLVQETLQILERHGGEDACI 44 (63)
Q Consensus 24 GdLI~eTL~~lEr~GG~dAfi 44 (63)
.+.|..-..-|.||||-.||-
T Consensus 54 ~~~~~~l~aFL~rHgg~ksFl 74 (111)
T COG4718 54 KEEIRPLEAFLSRHGGVKAFL 74 (111)
T ss_pred HHHhhhHHHHHHhcCcEEEEE
Confidence 467888888899999999984
No 44
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=23.44 E-value=73 Score=20.79 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=21.0
Q ss_pred ChhHHHHHHHHHHH--HcCCccceeee
Q psy7097 22 NIGDLVQETLQILE--RHGGEDACIYI 46 (63)
Q Consensus 22 nlGdLI~eTL~~lE--r~GG~dAfinI 46 (63)
-|.+|+....+.+. +.+|.+.++|+
T Consensus 72 Gl~~Lv~~~~~~v~~~~~~~~~v~~n~ 98 (136)
T PF09651_consen 72 GLRNLVRWVAEEVKNYKGRGYEVIFNA 98 (136)
T ss_dssp HHHHHHHHTHHHHHHHHHTT-EEEEE-
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEEEe
Confidence 49999999999998 89999999986
No 45
>PF14066 DUF4256: Protein of unknown function (DUF4256)
Probab=23.43 E-value=52 Score=23.78 Aligned_cols=14 Identities=43% Similarity=0.615 Sum_probs=11.5
Q ss_pred HHHHHHHHcCCccc
Q psy7097 29 ETLQILERHGGEDA 42 (63)
Q Consensus 29 eTL~~lEr~GG~dA 42 (63)
-+|.-+|++||+--
T Consensus 36 wsL~eME~TgGEPD 49 (173)
T PF14066_consen 36 WSLNEMERTGGEPD 49 (173)
T ss_pred HHHHHHHHhCCCCC
Confidence 47889999999754
No 46
>KOG2449|consensus
Probab=23.31 E-value=31 Score=24.57 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=29.6
Q ss_pred cCCCCCcccccc-cccCChhHHHHHHHHHHHHcCCccceeeeeecccCcceee
Q psy7097 6 NKNTGDAIDYSQ-MKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCI 57 (63)
Q Consensus 6 n~n~gD~idy~q-rk~~nlGdLI~eTL~~lEr~GG~dAfinIKymVPTYeScv 57 (63)
..|.|+.-+-+- +-+.+|-.|||. ++-..+.+..+|+|+-|-
T Consensus 23 ~v~~g~kp~tD~~a~~~ri~~liqS----------~~~~~~r~~yl~~ya~~~ 65 (157)
T KOG2449|consen 23 KVNAGEKPQTDKYAPKVRIDKLIQS----------EDPLDGRFIYLPGYAEGN 65 (157)
T ss_pred EeccCCCCCccchhHHHHHHHHhcC----------cCccCCceEEeeccccCC
Confidence 345555443221 234778899988 488899999999999875
No 47
>PF11573 Med23: Mediator complex subunit 23; InterPro: IPR021629 Med23 is one of the subunits of the Tail portion of the Mediator complex that regulates RNA polymerase II activity. Med23 is required for heat-shock-specific gene expression, and has been shown to mediate transcriptional activation of E1A in mice.
Probab=22.97 E-value=40 Score=30.59 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=26.2
Q ss_pred cccccCChhHHHHHHHHHHHHcCCc-------------cceeeeeec
Q psy7097 16 SQMKRENIGDLVQETLQILERHGGE-------------DACIYIKYM 49 (63)
Q Consensus 16 ~qrk~~nlGdLI~eTL~~lEr~GG~-------------dAfinIKym 49 (63)
.+.+.+.++|+..+-.++|++-... |-|=|||||
T Consensus 1292 ~~er~~~~~~i~i~ly~~l~~vd~~~~~~~l~~~d~ICDllYhiKYm 1338 (1341)
T PF11573_consen 1292 MRERTRCLMDITIELYELLKQVDKAQEGVELKYEDPICDLLYHIKYM 1338 (1341)
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhhcccCccceehhhHHHHhhhheee
Confidence 4556789999999999999986555 456677877
No 48
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=22.78 E-value=63 Score=20.73 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=19.7
Q ss_pred hhHHHHHHHH-----HHHHcCCccceeeeee
Q psy7097 23 IGDLVQETLQ-----ILERHGGEDACIYIKY 48 (63)
Q Consensus 23 lGdLI~eTL~-----~lEr~GG~dAfinIKy 48 (63)
+-+.|++.|+ .|.++||.=+++.|+-
T Consensus 10 ~~e~v~~~l~~~irP~l~~dGGdve~~~i~~ 40 (93)
T COG0694 10 LLERVEEVLDEKIRPQLAMDGGDVELVGIDE 40 (93)
T ss_pred HHHHHHHHHHhccCcceeccCCeEEEEEEec
Confidence 3345566666 6789999999999984
No 49
>smart00796 AHS1 Allophanate hydrolase subunit 1. This domain represents subunit 1 of allophanate hydrolase (AHS1).
Probab=22.25 E-value=1.4e+02 Score=20.79 Aligned_cols=45 Identities=11% Similarity=0.231 Sum_probs=26.8
Q ss_pred ccccccccCChhHHHHHHHHHHHHcCCccceeeeeecccCcceeeeeee
Q psy7097 13 IDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIPTYESCILRYT 61 (63)
Q Consensus 13 idy~qrk~~nlGdLI~eTL~~lEr~GG~dAfinIKymVPTYeScv~~~~ 61 (63)
++|+..-...+-..|..--+.|++. ..-.|.-+||+|.|....|.
T Consensus 13 v~~~~~~~~~~~~~v~~l~~~l~~~----~~~gi~e~vp~~~sllv~fd 57 (201)
T smart00796 13 VEFGDEIDLALNRRVLALARALRAA----PLPGVVELVPGYRSLLVHFD 57 (201)
T ss_pred EEECCcCCHHHHHHHHHHHHHHHhc----CCCCeEEccccceEEEEEEc
Confidence 4454332233344445555555543 34468899999999987663
No 50
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=22.15 E-value=1.2e+02 Score=21.11 Aligned_cols=28 Identities=11% Similarity=0.272 Sum_probs=20.2
Q ss_pred hhHHHHHHHHHHHHcCCccceeeeeeccc
Q psy7097 23 IGDLVQETLQILERHGGEDACIYIKYMIP 51 (63)
Q Consensus 23 lGdLI~eTL~~lEr~GG~dAfinIKymVP 51 (63)
...|++-.++.|+++|.++.=+ --+.||
T Consensus 25 t~~Ll~gA~~~l~~~G~~~~~i-~v~~VP 52 (158)
T PRK12419 25 VDQARKGFVAEIAARGGAASQV-DIFDVP 52 (158)
T ss_pred HHHHHHHHHHHHHHcCCCccce-EEEECC
Confidence 4568888999999999987633 223466
No 51
>PF03511 Fanconi_A: Fanconi anaemia group A protein; InterPro: IPR003516 Fanconi anaemia (FA) [, , ] is a recessive inherited disease characterised by defective DNA repair. FA cells are sensitive to DNA cross-linking agents that cause chromosomal instability and cell death. The disease is manifested clinically by progressive pancytopenia, variable physical anomalies, and predisposition to malignancy []. Four complementation groups have been identified, designated A to D. The FA group A gene (FAA) has been cloned [], but its function remains to be elucidated.
Probab=22.08 E-value=89 Score=19.36 Aligned_cols=15 Identities=33% Similarity=0.392 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHcC
Q psy7097 24 GDLVQETLQILERHG 38 (63)
Q Consensus 24 GdLI~eTL~~lEr~G 38 (63)
=|...|-|+.||+.|
T Consensus 33 ldiCaeIL~cLE~R~ 47 (64)
T PF03511_consen 33 LDICAEILGCLEKRK 47 (64)
T ss_pred HHHHHHHHHHHHhCC
Confidence 388999999999987
No 52
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=22.04 E-value=47 Score=19.50 Aligned_cols=15 Identities=13% Similarity=0.293 Sum_probs=12.2
Q ss_pred cCCccceeeeeeccc
Q psy7097 37 HGGEDACIYIKYMIP 51 (63)
Q Consensus 37 ~GG~dAfinIKymVP 51 (63)
-||+|.|.+|+-..+
T Consensus 24 ~g~~dvfvH~s~l~~ 38 (69)
T PRK09507 24 DGSKDVFVHFSAIQT 38 (69)
T ss_pred CCCeeEEEEeecccc
Confidence 378999999988764
No 53
>PRK13689 hypothetical protein; Provisional
Probab=22.03 E-value=1e+02 Score=19.53 Aligned_cols=20 Identities=35% Similarity=0.625 Sum_probs=17.2
Q ss_pred CChhHHHHHHHHHHHHcCCc
Q psy7097 21 ENIGDLVQETLQILERHGGE 40 (63)
Q Consensus 21 ~nlGdLI~eTL~~lEr~GG~ 40 (63)
+-+..|+.|-+.+||+|.-|
T Consensus 10 ~qvE~il~el~~VLeKH~Ap 29 (75)
T PRK13689 10 EQVEQLLAELLAVLEKHKAP 29 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 44889999999999999765
No 54
>PF09290 AcetDehyd-dimer: Prokaryotic acetaldehyde dehydrogenase, dimerisation; InterPro: IPR015426 This C-terminal domain is found in prokaryotic acetaldehyde dehydrogenases, it adopts a structure consisting of an alpha-beta-alpha-beta(3) core, which mediates dimerisation of the protein []. The acetaldehyde dehydrogenase family of bacterial enzymes catalyses the formation of acetyl-CoA from acetaldehyde in the 3-hydroxyphenylpropinoate degradation pathway. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate [].; GO: 0008774 acetaldehyde dehydrogenase (acetylating) activity, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1NVM_F.
Probab=21.95 E-value=2.1e+02 Score=19.88 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=20.0
Q ss_pred ccCChhHHHHHHHHHHHHcCCccc
Q psy7097 19 KRENIGDLVQETLQILERHGGEDA 42 (63)
Q Consensus 19 k~~nlGdLI~eTL~~lEr~GG~dA 42 (63)
-|.||.|-++-|=..||+.||.+-
T Consensus 37 TR~NIDEft~TT~~ai~~vgGa~~ 60 (137)
T PF09290_consen 37 TRANIDEFTETTARAIEQVGGAKR 60 (137)
T ss_dssp HHTTHHHHHHHHHHHHHHTT--SS
T ss_pred hhhhHHHHHHHHHHHHHHhcCccc
Confidence 468999999999999999999874
No 55
>PF03235 DUF262: Protein of unknown function DUF262; InterPro: IPR004919 This entry is found in prokaryotic proteins of unknown function.
Probab=21.92 E-value=29 Score=22.19 Aligned_cols=14 Identities=36% Similarity=0.567 Sum_probs=9.8
Q ss_pred ceeeee--ecccCcce
Q psy7097 42 ACIYIK--YMIPTYES 55 (63)
Q Consensus 42 AfinIK--ymVPTYeS 55 (63)
.|-+++ |.||.||-
T Consensus 4 l~~~~~~~~~iP~yQR 19 (221)
T PF03235_consen 4 LFSNIKIGIVIPDYQR 19 (221)
T ss_pred HHhCCCCCccCCCCCC
Confidence 344555 89999984
No 56
>PRK11190 Fe/S biogenesis protein NfuA; Provisional
Probab=21.48 E-value=1.3e+02 Score=21.12 Aligned_cols=25 Identities=32% Similarity=0.404 Sum_probs=20.4
Q ss_pred hhHHHHHHHH-----HHHHcCCccceeeee
Q psy7097 23 IGDLVQETLQ-----ILERHGGEDACIYIK 47 (63)
Q Consensus 23 lGdLI~eTL~-----~lEr~GG~dAfinIK 47 (63)
+-+.|+++|+ .|..|||.=.++.|+
T Consensus 107 ~~~~i~~~l~~~irP~l~~dGGdielv~v~ 136 (192)
T PRK11190 107 LMERVEYVLQSQINPQLAGHGGRVSLMEIT 136 (192)
T ss_pred HHHHHHHHHHhccChhHHhcCCcEEEEEEc
Confidence 5667777776 689999999998886
No 57
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=21.15 E-value=53 Score=19.77 Aligned_cols=15 Identities=27% Similarity=0.250 Sum_probs=12.0
Q ss_pred cCCccceeeeeeccc
Q psy7097 37 HGGEDACIYIKYMIP 51 (63)
Q Consensus 37 ~GG~dAfinIKymVP 51 (63)
-||+|+|.+|.-.-+
T Consensus 22 ~gg~dVFvH~s~i~~ 36 (74)
T PRK09937 22 GGGEDIFAHYSTIQM 36 (74)
T ss_pred CCCccEEEEEeeccc
Confidence 478999999987653
No 58
>TIGR03341 YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.
Probab=20.67 E-value=1.3e+02 Score=20.90 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=20.7
Q ss_pred hhHHHHHHHH-----HHHHcCCccceeeee
Q psy7097 23 IGDLVQETLQ-----ILERHGGEDACIYIK 47 (63)
Q Consensus 23 lGdLI~eTL~-----~lEr~GG~dAfinIK 47 (63)
+-+.|++.|+ .|..|||.=.++.|+
T Consensus 106 ~~~~i~~~l~~~irP~l~~dGGdielv~v~ 135 (190)
T TIGR03341 106 LEERINYVLQSEINPQLASHGGKVTLVEIT 135 (190)
T ss_pred HHHHHHHHHHhccCHHHHhcCCceEEEEEc
Confidence 6777777775 689999999998876
No 59
>PF14028 SpaB_C: SpaB C-terminal domain
Probab=20.61 E-value=39 Score=23.21 Aligned_cols=9 Identities=44% Similarity=0.807 Sum_probs=7.3
Q ss_pred HHHcCCccc
Q psy7097 34 LERHGGEDA 42 (63)
Q Consensus 34 lEr~GG~dA 42 (63)
+||+||+++
T Consensus 101 ~eRYGG~~~ 109 (283)
T PF14028_consen 101 IERYGGPAG 109 (283)
T ss_pred hhhhcCchH
Confidence 689999876
No 60
>PRK10943 cold shock-like protein CspC; Provisional
Probab=20.24 E-value=42 Score=19.69 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=11.9
Q ss_pred cCCccceeeeeeccc
Q psy7097 37 HGGEDACIYIKYMIP 51 (63)
Q Consensus 37 ~GG~dAfinIKymVP 51 (63)
.||+|.|.+|+-.-.
T Consensus 24 ~g~~dvFvH~s~l~~ 38 (69)
T PRK10943 24 DGSKDVFVHFSAIQG 38 (69)
T ss_pred CCCeeEEEEhhHccc
Confidence 378899999987654
Done!