Query psy7097
Match_columns 63
No_of_seqs 86 out of 88
Neff 3.2
Searched_HMMs 29240
Date Fri Aug 16 18:05:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7097.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7097hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kel_A SVTR protein, uncharact 66.2 4.3 0.00015 22.6 2.3 25 15-39 31-56 (56)
2 1bh9_B TAFII28; histone fold, 51.2 10 0.00036 23.0 2.4 18 23-40 50-67 (89)
3 2xdb_A TOXN; abortive infectio 46.2 4.2 0.00014 27.6 -0.0 23 39-61 79-101 (171)
4 4gif_A Polycystic kidney disea 43.0 12 0.00042 20.8 1.6 15 25-39 31-45 (45)
5 2ovj_A Mgcracgap, RAC GTPase-a 39.0 28 0.00097 22.4 3.1 31 8-38 2-32 (201)
6 2qez_A Ethanolamine ammonia-ly 36.6 8.8 0.0003 30.0 0.4 13 46-59 215-227 (455)
7 3abq_A Ethanolamine ammonia-ly 36.6 8.8 0.0003 30.0 0.4 13 46-59 214-226 (453)
8 2w4s_A Ankyrin-repeat protein; 35.9 22 0.00074 22.7 2.1 17 24-41 39-55 (113)
9 3d3b_A Protein NUSB, N utiliza 34.9 15 0.00051 22.7 1.2 24 22-45 101-126 (141)
10 1eyv_A NUSB protein, N-utilizi 32.1 17 0.0006 23.1 1.2 24 22-45 107-132 (156)
11 1tzv_A NUSB protein, N utiliza 30.5 14 0.00048 22.9 0.6 24 22-45 99-124 (142)
12 4glk_A ABIQ; alpha beta, endon 30.0 15 0.0005 24.7 0.6 22 39-60 82-103 (172)
13 1ll2_A Glycogenin-1; protein-s 29.9 11 0.00038 26.5 0.0 17 37-53 315-331 (333)
14 2k5e_A Uncharacterized protein 29.3 47 0.0016 18.8 2.7 20 19-38 7-29 (73)
15 1wyl_A NEDD9 interacting prote 28.6 18 0.00063 22.0 0.9 41 10-50 50-90 (116)
16 2xc7_A Phosphorylated adapter 27.5 33 0.0011 21.5 1.9 17 23-40 39-55 (104)
17 2oc6_A YDHG protein; secretion 27.4 22 0.00074 21.6 1.0 16 40-55 33-48 (124)
18 2jmf_B Neurogenic locus notch 27.0 8.1 0.00028 19.4 -0.8 10 50-59 13-22 (26)
19 2k53_A A3DK08 protein; NESG, C 26.9 43 0.0015 19.2 2.2 20 19-38 5-27 (76)
20 2kl4_A BH2032 protein; NB7804A 26.6 22 0.00076 21.3 1.0 16 40-55 35-50 (118)
21 2d87_A Smoothelin splice isofo 26.5 32 0.0011 21.5 1.7 41 10-50 50-90 (128)
22 2i8d_A Uncharacterized conserv 25.7 24 0.00081 21.5 1.0 16 40-55 33-48 (123)
23 2kt5_B ICP27; chaperone, mRNA 24.0 14 0.00048 20.3 -0.3 9 35-43 20-28 (40)
24 2czd_A Orotidine 5'-phosphate 23.4 22 0.00076 22.7 0.6 27 27-55 11-37 (208)
25 1lxj_A YBL001C, hypothetical 1 23.1 93 0.0032 18.8 3.4 26 23-48 56-81 (104)
26 2k9i_A Plasmid PRN1, complete 22.9 42 0.0014 16.9 1.5 20 15-34 27-46 (55)
27 4ato_A TOXN; HET: A23; 2.20A { 22.4 18 0.0006 24.9 -0.1 24 37-60 75-98 (194)
28 2deb_A CPT II, carnitine O-pal 21.8 22 0.00076 27.8 0.3 14 47-60 475-488 (653)
29 2ibo_A Hypothetical protein SP 21.6 98 0.0034 18.8 3.3 27 23-50 52-78 (104)
30 2epi_A UPF0045 protein MJ1052; 21.5 94 0.0032 18.6 3.1 26 23-49 56-81 (100)
31 1xl7_A COT, peroxisomal carnit 21.3 23 0.00079 27.3 0.3 13 48-60 434-446 (612)
32 2kwa_A Kinase A inhibitor; bac 21.2 87 0.003 18.1 2.9 33 24-60 30-62 (101)
33 2qn6_B Translation initiation 21.0 57 0.002 19.6 2.1 23 22-44 69-91 (93)
34 1t1u_A Choline O-acetyltransfe 20.1 25 0.00086 27.3 0.3 14 47-60 439-452 (639)
35 1nm8_A Carnitine O-acetyltrans 20.0 25 0.00087 27.2 0.3 13 48-60 426-438 (616)
No 1
>2kel_A SVTR protein, uncharacterized protein 56B; homodimer, ribbon-helix-helix, transcription repres; NMR {Sulfolobus islandicus rod-shaped virus}
Probab=66.24 E-value=4.3 Score=22.60 Aligned_cols=25 Identities=16% Similarity=0.445 Sum_probs=19.2
Q ss_pred ccccccCChhHHHHHHHHH-HHHcCC
Q psy7097 15 YSQMKRENIGDLVQETLQI-LERHGG 39 (63)
Q Consensus 15 y~qrk~~nlGdLI~eTL~~-lEr~GG 39 (63)
|+.+.++++.++|.|+|+- ||+.-|
T Consensus 31 ~Aa~~g~Sln~~i~eAL~~yl~~~e~ 56 (56)
T 2kel_A 31 YCAKNNLQLTQAIEEAIKEYLQKRNG 56 (56)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence 4556789999999999975 666544
No 2
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=51.19 E-value=10 Score=22.98 Aligned_cols=18 Identities=33% Similarity=0.728 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHcCCc
Q psy7097 23 IGDLVQETLQILERHGGE 40 (63)
Q Consensus 23 lGdLI~eTL~~lEr~GG~ 40 (63)
+||||+++|.+-|+.|..
T Consensus 50 VgelVE~A~~V~~~~~~~ 67 (89)
T 1bh9_B 50 VGEVVEEALDVCEKWGEM 67 (89)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 799999999999998753
No 3
>2xdb_A TOXN; abortive infection, phage; HET: A23; 2.55A {Pectobacterium atrosepticum} PDB: 2xd0_A* 2xdd_A*
Probab=46.23 E-value=4.2 Score=27.59 Aligned_cols=23 Identities=26% Similarity=0.377 Sum_probs=19.3
Q ss_pred CccceeeeeecccCcceeeeeee
Q psy7097 39 GEDACIYIKYMIPTYESCILRYT 61 (63)
Q Consensus 39 G~dAfinIKymVPTYeScv~~~~ 61 (63)
|.=+-+||..|||-.+||+....
T Consensus 79 ~~lgvin~nnMIPV~~~~~~~id 101 (171)
T 2xdb_A 79 NQLGLINLKFMIPIIEAEVSLLD 101 (171)
T ss_dssp EEEEEECGGGCEECCGGGEEECC
T ss_pred ceEEEEEeecccccCccceEEec
Confidence 46678999999999999997643
No 4
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=43.00 E-value=12 Score=20.79 Aligned_cols=15 Identities=47% Similarity=0.660 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHcCC
Q psy7097 25 DLVQETLQILERHGG 39 (63)
Q Consensus 25 dLI~eTL~~lEr~GG 39 (63)
|+|.+-|+++||.|+
T Consensus 31 dav~~Kl~~~Er~~~ 45 (45)
T 4gif_A 31 DAVGSKLKMLERKGW 45 (45)
T ss_dssp HHHHTHHHHHHHHTC
T ss_pred HHHHHHHHHHHhccC
Confidence 677888999999875
No 5
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=38.98 E-value=28 Score=22.38 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=27.6
Q ss_pred CCCCcccccccccCChhHHHHHHHHHHHHcC
Q psy7097 8 NTGDAIDYSQMKRENIGDLVQETLQILERHG 38 (63)
Q Consensus 8 n~gD~idy~qrk~~nlGdLI~eTL~~lEr~G 38 (63)
+.|+=-||-++.+..+--+|...++.+|++|
T Consensus 2 ~~g~L~~~~~~~~~~vP~iv~~~i~~l~~~g 32 (201)
T 2ovj_A 2 MEGMLADFVSQTSPMIPSIVVHCVNEIEQRG 32 (201)
T ss_dssp CCCCGGGGCCSSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCcHHHHhcccCCCCChHHHHHHHHHHHhC
Confidence 4688889988888999999999999999987
No 6
>2qez_A Ethanolamine ammonia-lyase heavy chain; ethanol ammonia lyase large subunit (EUTB), structural genomics; HET: MSE; 2.15A {Listeria monocytogenes serotype 4B}
Probab=36.65 E-value=8.8 Score=30.04 Aligned_cols=13 Identities=38% Similarity=0.945 Sum_probs=10.9
Q ss_pred eeecccCcceeeee
Q psy7097 46 IKYMIPTYESCILR 59 (63)
Q Consensus 46 IKymVPTYeScv~~ 59 (63)
-||-||| ||||+-
T Consensus 215 ~~~~IPT-Q~CVL~ 227 (455)
T 2qez_A 215 SKWDVPT-QTCVLA 227 (455)
T ss_dssp HHTTCCS-CEEECS
T ss_pred HHcCCCC-cceEee
Confidence 4788999 999974
No 7
>3abq_A Ethanolamine ammonia-lyase heavy chain; (beta/alpha)8 fold, cobalt, cobalamin; HET: B12; 2.05A {Escherichia coli} PDB: 3abo_A* 3abr_A* 3abs_A* 3any_A* 3ao0_A*
Probab=36.62 E-value=8.8 Score=30.03 Aligned_cols=13 Identities=46% Similarity=0.935 Sum_probs=10.9
Q ss_pred eeecccCcceeeee
Q psy7097 46 IKYMIPTYESCILR 59 (63)
Q Consensus 46 IKymVPTYeScv~~ 59 (63)
-||-||| ||||+-
T Consensus 214 ~~~~IPT-Q~CVL~ 226 (453)
T 3abq_A 214 DKFNIPT-QGCVLA 226 (453)
T ss_dssp HHTTCSC-CEEECS
T ss_pred HHcCCCC-cceEee
Confidence 4788999 999974
No 8
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A {Cryptosporidium parvum}
Probab=35.92 E-value=22 Score=22.75 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHcCCcc
Q psy7097 24 GDLVQETLQILERHGGED 41 (63)
Q Consensus 24 GdLI~eTL~~lEr~GG~d 41 (63)
-+|..||++ .|+.||--
T Consensus 39 ~~L~~eT~~-IE~~GG~~ 55 (113)
T 2w4s_A 39 LQLYENAMK-VENSGGLL 55 (113)
T ss_dssp HHHHHHHHH-HHHTTCCB
T ss_pred HHHHHHHHH-HHHcCCEE
Confidence 478899988 89999953
No 9
>3d3b_A Protein NUSB, N utilization substance protein B; NUSB, NUSE, NUT site, phage lambda, lambdan antitermina antitermination; HET: NHE; 1.30A {Escherichia coli} PDB: 3d3c_A 3imq_A 1ey1_A
Probab=34.91 E-value=15 Score=22.69 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=19.0
Q ss_pred ChhHHHHHHHHHHHHcCCccc--eee
Q psy7097 22 NIGDLVQETLQILERHGGEDA--CIY 45 (63)
Q Consensus 22 nlGdLI~eTL~~lEr~GG~dA--fin 45 (63)
.-.-.|.|+.++-.++|++++ |+|
T Consensus 101 P~~vaInEaVelaK~~~~~~~~~fVN 126 (141)
T 3d3b_A 101 PYKVAINEAIELAKSFGAEDSHKFVN 126 (141)
T ss_dssp CHHHHHHHHHHHHHHHSCTTHHHHHH
T ss_pred CchhhHHHHHHHHHHHCCCCchHHHH
Confidence 345689999999999988875 555
No 10
>1eyv_A NUSB protein, N-utilizing substance protein B homolog; helical bundle, structural genomics, PSI, protein structure initiative; 1.60A {Mycobacterium tuberculosis} SCOP: a.79.1.1
Probab=32.09 E-value=17 Score=23.05 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=19.4
Q ss_pred ChhHHHHHHHHHHHHcCCccc--eee
Q psy7097 22 NIGDLVQETLQILERHGGEDA--CIY 45 (63)
Q Consensus 22 nlGdLI~eTL~~lEr~GG~dA--fin 45 (63)
.-.-.|.|+.++--++|++++ |+|
T Consensus 107 P~~v~InEaVelak~~~~~~~~~fVN 132 (156)
T 1eyv_A 107 PEPVVVDEAVQLAKELSTDDSPGFVN 132 (156)
T ss_dssp CHHHHHHHHHHHHHHHSCTTHHHHHH
T ss_pred CchhHHHHHHHHHHHhCCCccccchH
Confidence 345789999999999998875 666
No 11
>1tzv_A NUSB protein, N utilization substance protein B homolog; RNA-protein interaction, transcriptional antitermination, transcription regulation; 1.35A {Thermotoga maritima} SCOP: a.79.1.1 PDB: 1tzu_A 1tzt_A 1tzw_A 1tzx_A*
Probab=30.51 E-value=14 Score=22.85 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=19.0
Q ss_pred ChhHHHHHHHHHHHHcCCccc--eee
Q psy7097 22 NIGDLVQETLQILERHGGEDA--CIY 45 (63)
Q Consensus 22 nlGdLI~eTL~~lEr~GG~dA--fin 45 (63)
.-.-.|.|+.++--++|++++ |+|
T Consensus 99 P~~vaInEaVelaK~~~~~~~~~fVN 124 (142)
T 1tzv_A 99 PIEVTIDEAIEIAKRYGTENSGKFVN 124 (142)
T ss_dssp CHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHCCCcchhhHH
Confidence 455789999999999998875 555
No 12
>4glk_A ABIQ; alpha beta, endonuclease, RNA antiq, hydrolase; 2.16A {Lactococcus lactis}
Probab=29.97 E-value=15 Score=24.70 Aligned_cols=22 Identities=18% Similarity=0.230 Sum_probs=18.3
Q ss_pred CccceeeeeecccCcceeeeee
Q psy7097 39 GEDACIYIKYMIPTYESCILRY 60 (63)
Q Consensus 39 G~dAfinIKymVPTYeScv~~~ 60 (63)
+.=+-+||.+|||.-+||....
T Consensus 82 ~~lgvi~lnnMIPVp~~~~~~i 103 (172)
T 4glk_A 82 NPLGYLLHHNMIPVPDSELIPL 103 (172)
T ss_dssp EEEEEEEGGGCEECCGGGEEEC
T ss_pred ceEEEEEEeccccCChHHeeEe
Confidence 4567899999999999998653
No 13
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=29.92 E-value=11 Score=26.51 Aligned_cols=17 Identities=35% Similarity=0.331 Sum_probs=0.0
Q ss_pred cCCccceeeeeecccCc
Q psy7097 37 HGGEDACIYIKYMIPTY 53 (63)
Q Consensus 37 ~GG~dAfinIKymVPTY 53 (63)
+=|.|||.||+-.+.++
T Consensus 315 y~g~d~f~~i~~kl~~~ 331 (333)
T 1ll2_A 315 YMGADSFDNIKKKLDTY 331 (333)
T ss_dssp -----------------
T ss_pred cccchhHHHHHHHHHHh
Confidence 45999999999777654
No 14
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=29.30 E-value=47 Score=18.82 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=17.0
Q ss_pred ccCChhHHHH---HHHHHHHHcC
Q psy7097 19 KRENIGDLVQ---ETLQILERHG 38 (63)
Q Consensus 19 k~~nlGdLI~---eTL~~lEr~G 38 (63)
+...|||+++ +|.++|.++|
T Consensus 7 ~d~tI~eiv~~~P~~~~vf~~~G 29 (73)
T 2k5e_A 7 KDMTFAQALQTHPGVAGVLRSYN 29 (73)
T ss_dssp SSSBHHHHHHHCTHHHHHHHHTT
T ss_pred CCCCHHHHHHHCHHHHHHHHHcC
Confidence 4577999998 5999999988
No 15
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A
Probab=28.60 E-value=18 Score=22.04 Aligned_cols=41 Identities=10% Similarity=0.106 Sum_probs=33.4
Q ss_pred CCcccccccccCChhHHHHHHHHHHHHcCCccceeeeeecc
Q psy7097 10 GDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMI 50 (63)
Q Consensus 10 gD~idy~qrk~~nlGdLI~eTL~~lEr~GG~dAfinIKymV 50 (63)
.|.|||+.-...+.-+=.+..+++.|++-|-..++.-+-|+
T Consensus 50 P~lid~~~l~~~~~~~n~~~af~~Ae~~lgi~~lL~peD~~ 90 (116)
T 1wyl_A 50 PGLLEPSELQGLGALEATAWALKVAENELGITPVVSAQAVV 90 (116)
T ss_dssp TTSCCCSSGGGCCHHHHHHHHHHHHHHTTCCCCCSCHHHHH
T ss_pred cCCCCHHHhccCCHHHHHHHHHHHHHHHcCCccccCHHHHh
Confidence 57789988777888888999999999988877777666655
No 16
>2xc7_A Phosphorylated adapter RNA export protein; RNA binding protein, protein-RNA complex, nuclear export; NMR {Homo sapiens}
Probab=27.53 E-value=33 Score=21.51 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHcCCc
Q psy7097 23 IGDLVQETLQILERHGGE 40 (63)
Q Consensus 23 lGdLI~eTL~~lEr~GG~ 40 (63)
.-+|.+||++ .|+.||-
T Consensus 39 ~~~ll~eT~~-IE~~GG~ 55 (104)
T 2xc7_A 39 AIELLMETAE-VEQNGGL 55 (104)
T ss_dssp HHHHHHHHHH-HHHHTCC
T ss_pred HHHHHHHHHH-HHHcCCE
Confidence 3578889988 6899994
No 17
>2oc6_A YDHG protein; secretion chaperone-like fold, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; 1.75A {Bacillus subtilis} SCOP: d.198.4.1
Probab=27.37 E-value=22 Score=21.58 Aligned_cols=16 Identities=19% Similarity=0.326 Sum_probs=13.0
Q ss_pred ccceeeeeecccCcce
Q psy7097 40 EDACIYIKYMIPTYES 55 (63)
Q Consensus 40 ~dAfinIKymVPTYeS 55 (63)
|++---|||..|+|..
T Consensus 33 P~l~E~ikwg~P~y~~ 48 (124)
T 2oc6_A 33 PNLHTEIKWNQPMFTD 48 (124)
T ss_dssp TTSEEEEETTEEEEEE
T ss_pred CCCceEeEcCCCeEEe
Confidence 5677789999999963
No 18
>2jmf_B Neurogenic locus notch protein; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster}
Probab=27.00 E-value=8.1 Score=19.43 Aligned_cols=10 Identities=50% Similarity=1.049 Sum_probs=7.9
Q ss_pred ccCcceeeee
Q psy7097 50 IPTYESCILR 59 (63)
Q Consensus 50 VPTYeScv~~ 59 (63)
-|+||.|+..
T Consensus 13 ppsyedcik~ 22 (26)
T 2jmf_B 13 PPSYEDCIKX 22 (26)
T ss_pred CCCHHHHHHh
Confidence 4899999854
No 19
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=26.91 E-value=43 Score=19.17 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=16.9
Q ss_pred ccCChhHHHHH---HHHHHHHcC
Q psy7097 19 KRENIGDLVQE---TLQILERHG 38 (63)
Q Consensus 19 k~~nlGdLI~e---TL~~lEr~G 38 (63)
+...|||+++. |.++|.++|
T Consensus 5 ~d~tI~eIv~~~P~~~~vf~~~G 27 (76)
T 2k53_A 5 KDMIIADVLQMDRGTAPIFINNG 27 (76)
T ss_dssp TTSBHHHHHHHCGGGHHHHHHTT
T ss_pred CCCCHHHHHHHCHHHHHHHHHcC
Confidence 45679999984 999999988
No 20
>2kl4_A BH2032 protein; NB7804A, structural genomics, PSI-2, protein structure initiative, joint center for structural genomics, JCSG; NMR {Bacillus halodurans}
Probab=26.57 E-value=22 Score=21.29 Aligned_cols=16 Identities=13% Similarity=0.281 Sum_probs=13.1
Q ss_pred ccceeeeeecccCcce
Q psy7097 40 EDACIYIKYMIPTYES 55 (63)
Q Consensus 40 ~dAfinIKymVPTYeS 55 (63)
+++=--|||..|+|..
T Consensus 35 p~l~E~ikwg~P~y~~ 50 (118)
T 2kl4_A 35 PNLEPQMKWNTPMFSN 50 (118)
T ss_dssp TTCEEEEETTEEEEES
T ss_pred CCcceeeEcCcCeEEe
Confidence 5777789999999963
No 21
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A
Probab=26.49 E-value=32 Score=21.46 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=34.0
Q ss_pred CCcccccccccCChhHHHHHHHHHHHHcCCccceeeeeecc
Q psy7097 10 GDAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMI 50 (63)
Q Consensus 10 gD~idy~qrk~~nlGdLI~eTL~~lEr~GG~dAfinIKymV 50 (63)
.|.|||+.-...+.-+=.+..+++.|+++|-..++.-+-||
T Consensus 50 P~lid~~~l~~~~~~~n~~~af~~Ae~~lgip~lL~peD~v 90 (128)
T 2d87_A 50 PEAFDYGQLSPQNRRQNFEVAFSSAETHADCPQLLDTEDMV 90 (128)
T ss_dssp TTTSCSTTSCSSCHHHHHHHHHHHHHHHHCCCCCSCHHHHH
T ss_pred cCcCCHHHcCccCHHHHHHHHHHHHHHcCCCCcccCHHHHh
Confidence 56789987667778888999999999999988888777765
No 22
>2i8d_A Uncharacterized conserved protein of COG5646; ZP_00384875.1, structural genomics, PSI-2, protein structure initiative; HET: MSE UNL; 1.69A {Lactobacillus casei} SCOP: d.198.4.1
Probab=25.66 E-value=24 Score=21.45 Aligned_cols=16 Identities=13% Similarity=0.277 Sum_probs=13.0
Q ss_pred ccceeeeeecccCcce
Q psy7097 40 EDACIYIKYMIPTYES 55 (63)
Q Consensus 40 ~dAfinIKymVPTYeS 55 (63)
|++---|||..|+|-.
T Consensus 33 P~l~E~ikwg~P~y~~ 48 (123)
T 2i8d_A 33 PQLKLEFKWNQPMFTD 48 (123)
T ss_dssp TTCEEEEETTEEEEEE
T ss_pred CCceeEEEcCcCEEEe
Confidence 5677789999999963
No 23
>2kt5_B ICP27; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Human herpesvirus 1}
Probab=23.99 E-value=14 Score=20.26 Aligned_cols=9 Identities=67% Similarity=0.962 Sum_probs=7.9
Q ss_pred HHcCCccce
Q psy7097 35 ERHGGEDAC 43 (63)
Q Consensus 35 Er~GG~dAf 43 (63)
|++||.+|-
T Consensus 20 E~~~GkvAR 28 (40)
T 2kt5_B 20 ERHGGKVAR 28 (40)
T ss_dssp CCCCCCSCC
T ss_pred CCCCCceee
Confidence 889999985
No 24
>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*
Probab=23.43 E-value=22 Score=22.74 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCccceeeeeecccCcce
Q psy7097 27 VQETLQILERHGGEDACIYIKYMIPTYES 55 (63)
Q Consensus 27 I~eTL~~lEr~GG~dAfinIKymVPTYeS 55 (63)
+.+.++++|+.|.. ..++|.|.+.|.+
T Consensus 11 l~~~~~~~~~~~~~--~~~~kv~~~~f~~ 37 (208)
T 2czd_A 11 GERAIKIAKSVKDY--ISMIKVNWPLILG 37 (208)
T ss_dssp HHHHHHHHHHHGGG--CSEEEEEHHHHHH
T ss_pred HHHHHHHHHHhccc--ccEEEecHHHHHh
Confidence 36788899998653 4569999888854
No 25
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=23.14 E-value=93 Score=18.77 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=23.1
Q ss_pred hhHHHHHHHHHHHHcCCccceeeeee
Q psy7097 23 IGDLVQETLQILERHGGEDACIYIKY 48 (63)
Q Consensus 23 lGdLI~eTL~~lEr~GG~dAfinIKy 48 (63)
+-++|.+..+.+...|.+..+..||.
T Consensus 56 vm~vv~~~~e~~~~~G~~RV~~~iKi 81 (104)
T 1lxj_A 56 VMGLIGEIHEYGHEKGYVRVHTDIRV 81 (104)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence 67788999999999999999999997
No 26
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=22.92 E-value=42 Score=16.89 Aligned_cols=20 Identities=10% Similarity=0.197 Sum_probs=15.5
Q ss_pred ccccccCChhHHHHHHHHHH
Q psy7097 15 YSQMKRENIGDLVQETLQIL 34 (63)
Q Consensus 15 y~qrk~~nlGdLI~eTL~~l 34 (63)
+..+.+.+..++|.+.|+.+
T Consensus 27 ~a~~~g~s~s~~ir~ai~~~ 46 (55)
T 2k9i_A 27 IAKEKNLTLSDVCRLAIKEY 46 (55)
T ss_dssp HHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHH
Confidence 45566789999999988753
No 27
>4ato_A TOXN; HET: A23; 2.20A {Bacillus thuringiensis}
Probab=22.41 E-value=18 Score=24.88 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=20.7
Q ss_pred cCCccceeeeeecccCcceeeeee
Q psy7097 37 HGGEDACIYIKYMIPTYESCILRY 60 (63)
Q Consensus 37 ~GG~dAfinIKymVPTYeScv~~~ 60 (63)
..|.-+-+||.+|||.-++|....
T Consensus 75 ~~~~lgvi~innMiPV~~~~i~~i 98 (194)
T 4ato_A 75 DEKRIGVLLVNNMIPVPEKECKEI 98 (194)
T ss_dssp TCCEEEEEEGGGCEECCTTSEEEC
T ss_pred cCCeEEEEEecccccCCHHHeeEe
Confidence 467889999999999999998654
No 28
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
Probab=21.82 E-value=22 Score=27.85 Aligned_cols=14 Identities=36% Similarity=0.517 Sum_probs=10.9
Q ss_pred eecccCcceeeeee
Q psy7097 47 KYMIPTYESCILRY 60 (63)
Q Consensus 47 KymVPTYeScv~~~ 60 (63)
...+||||||.++.
T Consensus 475 G~~~~TYEsastR~ 488 (653)
T 2deb_A 475 GQTVATYESCSTAA 488 (653)
T ss_dssp SCCCCEEEEEECTT
T ss_pred CCCCceeeehhccc
Confidence 34699999999763
No 29
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=21.56 E-value=98 Score=18.81 Aligned_cols=27 Identities=11% Similarity=0.320 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHcCCccceeeeeecc
Q psy7097 23 IGDLVQETLQILERHGGEDACIYIKYMI 50 (63)
Q Consensus 23 lGdLI~eTL~~lEr~GG~dAfinIKymV 50 (63)
+-++|.+..+.+.. |.+..+..||.-.
T Consensus 52 vm~vv~~~~e~~~~-g~~RV~t~iKid~ 78 (104)
T 2ibo_A 52 LMRILKEALEVAGQ-EADNVFANVKINV 78 (104)
T ss_dssp HHHHHHHHHHHHHT-SCSCEEEEEEEEE
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEEEEEc
Confidence 67889999999888 9999999999743
No 30
>2epi_A UPF0045 protein MJ1052; NPPSFA, national project on protein structural and functiona analyses; 1.70A {Methanocaldococcus jannaschii} PDB: 2eky_A
Probab=21.50 E-value=94 Score=18.63 Aligned_cols=26 Identities=12% Similarity=-0.003 Sum_probs=21.7
Q ss_pred hhHHHHHHHHHHHHcCCccceeeeeec
Q psy7097 23 IGDLVQETLQILERHGGEDACIYIKYM 49 (63)
Q Consensus 23 lGdLI~eTL~~lEr~GG~dAfinIKym 49 (63)
+-++|.+..+.+.. |.+..+..||.=
T Consensus 56 vm~vv~~~~e~~~~-g~~RV~~~iKid 81 (100)
T 2epi_A 56 ILKAFKEAHSTVLN-DVDRVVSSLKID 81 (100)
T ss_dssp HHHHHHHHHHHHHT-TSSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEEEEE
Confidence 66788888888888 999999888863
No 31
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine, hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3 c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Probab=21.28 E-value=23 Score=27.31 Aligned_cols=13 Identities=31% Similarity=0.380 Sum_probs=10.5
Q ss_pred ecccCcceeeeee
Q psy7097 48 YMIPTYESCILRY 60 (63)
Q Consensus 48 ymVPTYeScv~~~ 60 (63)
..+||||||.++.
T Consensus 434 ~~~~TYEsastR~ 446 (612)
T 1xl7_A 434 RPGCCYETAMTRY 446 (612)
T ss_dssp SCCCEEEEEECTT
T ss_pred CcCCEeechhccc
Confidence 4699999999763
No 32
>2kwa_A Kinase A inhibitor; bacterial signal transduction, KIPI, histidine kinase inhibi bacillus subtilis, transferase inhibitor; NMR {Bacillus subtilis}
Probab=21.22 E-value=87 Score=18.12 Aligned_cols=33 Identities=18% Similarity=0.225 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHcCCccceeeeeecccCcceeeeee
Q psy7097 24 GDLVQETLQILERHGGEDACIYIKYMIPTYESCILRY 60 (63)
Q Consensus 24 GdLI~eTL~~lEr~GG~dAfinIKymVPTYeScv~~~ 60 (63)
-.-|...-+.|+....+ -|--+||+|.|....|
T Consensus 30 ~~~v~al~~~L~~~~~~----Gv~EiVPa~~SllV~y 62 (101)
T 2kwa_A 30 NGIVHAAAAYIEEQPFP----GFIECIPAFTSLTVFY 62 (101)
T ss_dssp HHHHHHHHHHHHHSCCT----TEEEEEECSSEEEEEE
T ss_pred HHHHHHHHHHHHccCCC----CeEEeccCceEEEEEE
Confidence 33455555677776443 3567999999998766
No 33
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=21.03 E-value=57 Score=19.62 Aligned_cols=23 Identities=4% Similarity=0.228 Sum_probs=18.5
Q ss_pred ChhHHHHHHHHHHHHcCCcccee
Q psy7097 22 NIGDLVQETLQILERHGGEDACI 44 (63)
Q Consensus 22 nlGdLI~eTL~~lEr~GG~dAfi 44 (63)
-|.+.|+...+..|++||+-.|.
T Consensus 69 ~L~~ai~~i~~~i~~~gG~~~v~ 91 (93)
T 2qn6_B 69 ALNQIISNLIKIGKEENVDISVV 91 (93)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCEEEEE
Confidence 36778888888999999987654
No 34
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A {Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A 2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Probab=20.10 E-value=25 Score=27.34 Aligned_cols=14 Identities=43% Similarity=0.802 Sum_probs=11.1
Q ss_pred eecccCcceeeeee
Q psy7097 47 KYMIPTYESCILRY 60 (63)
Q Consensus 47 KymVPTYeScv~~~ 60 (63)
...+||||||.++.
T Consensus 439 G~~~~TYEsastR~ 452 (639)
T 1t1u_A 439 QRLVPTYESASIRR 452 (639)
T ss_dssp SSCCCEEEEEECTT
T ss_pred CCcCCcccchhhcc
Confidence 35799999999763
No 35
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains, anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP: c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A* 1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Probab=20.03 E-value=25 Score=27.20 Aligned_cols=13 Identities=46% Similarity=0.516 Sum_probs=10.6
Q ss_pred ecccCcceeeeee
Q psy7097 48 YMIPTYESCILRY 60 (63)
Q Consensus 48 ymVPTYeScv~~~ 60 (63)
..+||||||.++.
T Consensus 426 ~~~~TYEsastR~ 438 (616)
T 1nm8_A 426 QACATYESASLRM 438 (616)
T ss_dssp SCCCEEEEEECTT
T ss_pred CCCCeEecccccc
Confidence 5689999999763
Done!