RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy7097
         (63 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 31.2 bits (70), Expect = 0.012
 Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 14/68 (20%)

Query: 1    MYKDLNKNTG------DAIDYSQMKRENIG----DLVQETLQILERH-GGEDAC-IYIKY 48
            M  DL K +       +  D     ++  G    D+V      L  H GGE    I   Y
Sbjct: 1631 MGMDLYKTSKAAQDVWNRAD--NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENY 1688

Query: 49   MIPTYESC 56
                +E+ 
Sbjct: 1689 SAMIFETI 1696


>1vpb_A Putative modulator of DNA gyrase; structural genomics, joint for
          structural genomics, JCSG, protein structure initiative
          hydrolase; 1.75A {Bacteroides thetaiotaomicron} SCOP:
          d.283.1.1
          Length = 451

 Score = 26.4 bits (59), Expect = 0.46
 Identities = 5/33 (15%), Positives = 13/33 (39%)

Query: 14 DYSQMKRENIGDLVQETLQILERHGGEDACIYI 46
           +  M  +    L Q  +    ++G + A + +
Sbjct: 9  HHHHMITDENKKLAQWAMDYALKNGCQAAKVLL 41


>3kmh_A D-lyxose isomerase; cupin beta-barrel, structural genomics,
          montreal-kingston BA structural genomics initiative,
          BSGI; 1.58A {Escherichia coli O157} PDB: 3mpb_A*
          Length = 246

 Score = 25.7 bits (56), Expect = 0.94
 Identities = 8/23 (34%), Positives = 11/23 (47%)

Query: 16 SQMKRENIGDLVQETLQILERHG 38
            MKR  I D++  T Q   +H 
Sbjct: 18 GSMKRSAINDILGHTRQFFSQHD 40


>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase,
           hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
           SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
          Length = 1180

 Score = 24.9 bits (54), Expect = 1.8
 Identities = 7/36 (19%), Positives = 11/36 (30%), Gaps = 4/36 (11%)

Query: 15  YSQMKREN----IGDLVQETLQILERHGGEDACIYI 46
            ++ KR        D++      L    GE     I
Sbjct: 339 VAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAI 374


>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains;
           CH domain, mical, structural genomics; NMR {Homo
           sapiens} PDB: 2dk9_A
          Length = 116

 Score = 24.2 bits (53), Expect = 3.0
 Identities = 6/58 (10%), Positives = 18/58 (31%), Gaps = 8/58 (13%)

Query: 11  DAIDYSQMKRENIGDLVQETLQILERHGGEDACIYIKYMIP--------TYESCILRY 60
             ++ S+++     +     L++ E   G    +  + ++          Y S     
Sbjct: 51  GLLEPSELQGLGALEATAWALKVAENELGITPVVSAQAVVAGSDPLGLIAYLSHFHSA 108


>3hmc_A Putative prophage lambdaba04, glycosyl hydrolase, 25; endolysin;
           HET: MES; 1.44A {Bacillus anthracis} PDB: 2nw0_A
          Length = 192

 Score = 23.4 bits (51), Expect = 6.2
 Identities = 6/35 (17%), Positives = 12/35 (34%)

Query: 12  AIDYSQMKRENIGDLVQETLQILERHGGEDACIYI 46
             D       ++    Q  +  L R G +   +Y+
Sbjct: 91  VADVEVKTMNDMRAGTQAFIDELYRLGAKKVGLYV 125


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.319    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0585    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 945,832
Number of extensions: 40785
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 8
Length of query: 63
Length of database: 6,701,793
Length adjustment: 34
Effective length of query: 29
Effective length of database: 5,752,479
Effective search space: 166821891
Effective search space used: 166821891
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)