RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7097
         (63 letters)



>d1t0hb_ c.37.1.1 (B:) Guanylate kinase-like domain of the L-type
           calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId:
           9986]}
          Length = 219

 Score = 24.0 bits (52), Expect = 1.4
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 14/59 (23%)

Query: 5   LNKNTGDAIDYSQMKRENIGDLVQETL----------QILERHGGEDACIYIKYMIPTY 53
           L K+ G     SQ K  N+  +  + L           IL+ +  EDAC ++   +  Y
Sbjct: 146 LIKSRGK----SQAKHLNVQMVAADKLAQCPPQESFDVILDENQLEDACEHLADYLEAY 200


>d1wota_ d.218.1.5 (A:) Unnamed putative nucleotidyltransferase
          {Thermus thermophilus [TaxId: 274]}
          Length = 98

 Score = 22.5 bits (48), Expect = 3.4
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 16 SQMKRENIGDLVQETLQILERHGGEDACIY 45
          S M  E +    +  L +  RHG     ++
Sbjct: 2  SHMDLETLRARREAVLSLCARHGAVRVRVF 31


>d1vpba_ d.283.1.1 (A:) Putative modulator of DNA gyrase BT3649
          {Bacteroides thetaiotaomicron [TaxId: 818]}
          Length = 439

 Score = 21.8 bits (45), Expect = 9.1
 Identities = 5/29 (17%), Positives = 12/29 (41%)

Query: 18 MKRENIGDLVQETLQILERHGGEDACIYI 46
          M  +    L Q  +    ++G + A + +
Sbjct: 1  MITDENKKLAQWAMDYALKNGCQAAKVLL 29


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.138    0.404 

Gapped
Lambda     K      H
   0.267   0.0617    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 233,817
Number of extensions: 8205
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 6
Length of query: 63
Length of database: 2,407,596
Length adjustment: 32
Effective length of query: 31
Effective length of database: 1,968,236
Effective search space: 61015316
Effective search space used: 61015316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)