BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7099
         (75 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex
          Length = 1253

 Score =  110 bits (276), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/71 (66%), Positives = 61/71 (85%)

Query: 4   FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
           +  FVG  HF+ +CRLLGYQGIAVVMEELLK+V SL+QG++LQ+ KTLM+ MPK C+LPR
Sbjct: 905 YRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPR 964

Query: 64  YDYGSPGVLGY 74
           ++YGSPG+L +
Sbjct: 965 HEYGSPGILEF 975


>pdb|3V6M|A Chain A, Inhibition Of Caspase-6 Activity By Single Mutation
           Outside The Active Site
 pdb|3V6M|B Chain B, Inhibition Of Caspase-6 Activity By Single Mutation
           Outside The Active Site
 pdb|3V6M|C Chain C, Inhibition Of Caspase-6 Activity By Single Mutation
           Outside The Active Site
 pdb|3V6M|D Chain D, Inhibition Of Caspase-6 Activity By Single Mutation
           Outside The Active Site
 pdb|3V6M|F Chain F, Inhibition Of Caspase-6 Activity By Single Mutation
           Outside The Active Site
 pdb|3V6M|G Chain G, Inhibition Of Caspase-6 Activity By Single Mutation
           Outside The Active Site
 pdb|3V6M|I Chain I, Inhibition Of Caspase-6 Activity By Single Mutation
           Outside The Active Site
 pdb|3V6M|J Chain J, Inhibition Of Caspase-6 Activity By Single Mutation
           Outside The Active Site
          Length = 279

 Score = 27.3 bits (59), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 23/41 (56%)

Query: 9   GAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTK 49
           G+++ + +C +LG  G ++   ELL +V   ++   + F K
Sbjct: 203 GSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVEQRRVDFCK 243


>pdb|3V6L|A Chain A, Crystal Structure Of Caspase-6 Inactivation Mutation
 pdb|3V6L|B Chain B, Crystal Structure Of Caspase-6 Inactivation Mutation
          Length = 282

 Score = 27.3 bits (59), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 23/41 (56%)

Query: 9   GAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTK 49
           G+++ + +C +LG  G ++   ELL +V   ++   + F K
Sbjct: 206 GSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVEQRRVDFCK 246


>pdb|3P4U|B Chain B, Crystal Structure Of Active Caspase-6 In Complex With
          Ac-Veid-Cho Inhibitor
 pdb|3P4U|D Chain D, Crystal Structure Of Active Caspase-6 In Complex With
          Ac-Veid-Cho Inhibitor
          Length = 108

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 9  GAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTK 49
          G+++ + +C +LG  G ++   ELL +V   +    + F K
Sbjct: 33 GSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFXK 73


>pdb|3P45|B Chain B, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
 pdb|3P45|D Chain D, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
 pdb|3P45|F Chain F, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
 pdb|3P45|H Chain H, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
 pdb|3P45|J Chain J, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
 pdb|3P45|L Chain L, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
 pdb|3P45|N Chain N, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
 pdb|3P45|P Chain P, Crystal Structure Of Apo-Caspase-6 At Physiological Ph
          Length = 108

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 9  GAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTK 49
          G+++ + +C +LG  G ++   ELL +V   +    + F K
Sbjct: 33 GSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCK 73


>pdb|3QNW|B Chain B, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
 pdb|3QNW|D Chain D, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
 pdb|3QNW|F Chain F, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
 pdb|3QNW|H Chain H, Caspase-6 In Complex With Z-Vad-Fmk Inhibitor
          Length = 100

 Score = 26.9 bits (58), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 9  GAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTK 49
          G+++ + +C +LG  G ++   ELL +V   +    + F K
Sbjct: 32 GSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCK 72


>pdb|4FXO|A Chain A, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
 pdb|4FXO|B Chain B, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
 pdb|4FXO|C Chain C, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
 pdb|4FXO|D Chain D, Zinc-Mediated Allosteric Inhibiton Of Caspase-6
          Length = 299

 Score = 26.6 bits (57), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 9   GAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTK 49
           G+++ + +C +LG  G ++   ELL +V   +    + F K
Sbjct: 225 GSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCK 265


>pdb|4EJF|A Chain A, Allosteric Peptides That Bind To A Caspase Zymogen And
           Mediate Caspase Tetramerization
 pdb|4EJF|B Chain B, Allosteric Peptides That Bind To A Caspase Zymogen And
           Mediate Caspase Tetramerization
 pdb|4EJF|C Chain C, Allosteric Peptides That Bind To A Caspase Zymogen And
           Mediate Caspase Tetramerization
 pdb|4EJF|D Chain D, Allosteric Peptides That Bind To A Caspase Zymogen And
           Mediate Caspase Tetramerization
          Length = 279

 Score = 26.6 bits (57), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 9   GAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTK 49
           G+++ + +C +LG  G ++   ELL +V   +    + F K
Sbjct: 205 GSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCK 245


>pdb|3NKF|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6
           With Intersubunit Linker Attached
 pdb|3NKF|B Chain B, Crystal Structure Of Human Ligand-Free Mature Caspase-6
           With Intersubunit Linker Attached
 pdb|3NKF|C Chain C, Crystal Structure Of Human Ligand-Free Mature Caspase-6
           With Intersubunit Linker Attached
 pdb|3NKF|D Chain D, Crystal Structure Of Human Ligand-Free Mature Caspase-6
           With Intersubunit Linker Attached
          Length = 277

 Score = 26.6 bits (57), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 9   GAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTK 49
           G+++ + +C +LG  G ++   ELL +V   +    + F K
Sbjct: 203 GSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCK 243


>pdb|3NR2|A Chain A, Crystal Structure Of Caspase-6 Zymogen
 pdb|3NR2|B Chain B, Crystal Structure Of Caspase-6 Zymogen
          Length = 294

 Score = 26.6 bits (57), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 9   GAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTK 49
           G+++ + +C +LG  G ++   ELL +V   +    + F K
Sbjct: 218 GSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCK 258


>pdb|3K7E|A Chain A, Crystal Structure Of Human Ligand-Free Mature Caspase-6
 pdb|3K7E|B Chain B, Crystal Structure Of Human Ligand-Free Mature Caspase-6
 pdb|3K7E|C Chain C, Crystal Structure Of Human Ligand-Free Mature Caspase-6
 pdb|3K7E|D Chain D, Crystal Structure Of Human Ligand-Free Mature Caspase-6
 pdb|3OD5|A Chain A, Crystal Structure Of Active Caspase-6 Bound With
           Ac-Veid-Cho
 pdb|3OD5|B Chain B, Crystal Structure Of Active Caspase-6 Bound With
           Ac-Veid-Cho
 pdb|3S70|A Chain A, Crystal Structure Of Active Caspase-6 Bound With
           Ac-Veid-Cho Solved By As-Sad
 pdb|3S70|C Chain C, Crystal Structure Of Active Caspase-6 Bound With
           Ac-Veid-Cho Solved By As-Sad
          Length = 278

 Score = 26.6 bits (57), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 9   GAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTK 49
           G+++ + +C +LG  G ++   ELL +V   +    + F K
Sbjct: 202 GSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCK 242


>pdb|2WDP|A Chain A, Crystal Structure Of Ligand Free Human Caspase-6
 pdb|2WDP|B Chain B, Crystal Structure Of Ligand Free Human Caspase-6
 pdb|2WDP|C Chain C, Crystal Structure Of Ligand Free Human Caspase-6
 pdb|2WDP|D Chain D, Crystal Structure Of Ligand Free Human Caspase-6
          Length = 293

 Score = 26.6 bits (57), Expect = 4.3,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 9   GAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTK 49
           G+++ + +C +LG  G ++   ELL +V   +    + F K
Sbjct: 225 GSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVSQRRVDFCK 265


>pdb|3S8E|A Chain A, Phosphorylation Regulates Assembly Of The Caspase-6
           Substrate-Binding Groove
 pdb|3S8E|B Chain B, Phosphorylation Regulates Assembly Of The Caspase-6
           Substrate-Binding Groove
 pdb|3S8E|C Chain C, Phosphorylation Regulates Assembly Of The Caspase-6
           Substrate-Binding Groove
 pdb|3S8E|D Chain D, Phosphorylation Regulates Assembly Of The Caspase-6
           Substrate-Binding Groove
 pdb|3S8E|E Chain E, Phosphorylation Regulates Assembly Of The Caspase-6
           Substrate-Binding Groove
 pdb|3S8E|F Chain F, Phosphorylation Regulates Assembly Of The Caspase-6
           Substrate-Binding Groove
 pdb|3S8E|G Chain G, Phosphorylation Regulates Assembly Of The Caspase-6
           Substrate-Binding Groove
 pdb|3S8E|H Chain H, Phosphorylation Regulates Assembly Of The Caspase-6
           Substrate-Binding Groove
          Length = 277

 Score = 26.2 bits (56), Expect = 4.5,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 9   GAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTK 49
           G+++ + +C +LG  G ++   ELL +V   +    + F K
Sbjct: 203 GSWYIQDLCEMLGKYGSSLEFTELLTLVNRKVDQRRVDFCK 243


>pdb|2ZKQ|II Chain i, Structure Of A Mammalian Ribosomal 40s Subunit Within An
           80s Complex Obtained By Docking Homology Models Of The
           Rna And Proteins Into An 8.7 A Cryo-Em Map
          Length = 146

 Score = 25.4 bits (54), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 2/32 (6%)

Query: 40  IQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGV 71
           I+  L+Q+ +TL+ A P++C+  +  +G PG 
Sbjct: 108 IKDILIQYDRTLLVADPRRCESKK--FGGPGA 137


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.330    0.145    0.441 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,144,994
Number of Sequences: 62578
Number of extensions: 58560
Number of successful extensions: 137
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 124
Number of HSP's gapped (non-prelim): 14
length of query: 75
length of database: 14,973,337
effective HSP length: 44
effective length of query: 31
effective length of database: 12,219,905
effective search space: 378817055
effective search space used: 378817055
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 45 (21.9 bits)