Query psy7099
Match_columns 75
No_of_seqs 47 out of 49
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 18:07:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7099.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7099hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_A Cytoplasmic FMR1-intera 99.9 6.7E-29 2.3E-33 211.2 5.9 73 2-74 903-975 (1253)
2 1tue_A Replication protein E1; 61.1 2.8 9.5E-05 29.8 1.1 49 7-71 21-69 (212)
3 3p8c_B NCK-associated protein 59.5 8.9 0.0003 33.4 4.0 40 10-50 833-872 (1128)
4 1dlc_A Delta-endotoxin CRYIIIA 45.5 20 0.00068 28.3 3.7 38 13-52 32-69 (584)
5 2qkg_A Insecticidal delta-endo 42.9 11 0.00038 30.0 1.9 25 28-52 47-71 (589)
6 3fci_A UDG, uracil-DNA glycosy 42.3 9.9 0.00034 27.2 1.4 24 2-25 192-215 (223)
7 3tr7_A UDG, uracil-DNA glycosy 42.1 11 0.00038 27.2 1.7 23 2-24 197-219 (232)
8 3uf7_A UDG, uracil-DNA glycosy 41.2 10 0.00036 27.4 1.4 23 2-24 192-214 (237)
9 1ji6_A Pesticidial crystal pro 38.3 22 0.00074 28.2 2.9 40 12-52 28-67 (589)
10 2j8x_A Uracil-DNA glycosylase; 35.5 15 0.00051 26.4 1.5 22 4-25 203-224 (231)
11 1i5p_A Pesticidial crystal pro 32.6 32 0.0011 28.3 3.1 41 12-52 73-113 (633)
12 3a7n_A UDG, uracil-DNA glycosy 32.5 17 0.0006 26.2 1.4 23 3-25 208-230 (238)
13 3cxm_A Uracil-DNA glycosylase; 30.5 19 0.00066 26.5 1.4 22 3-24 232-253 (268)
14 3m91_B Prokaryotic ubiquitin-l 30.4 31 0.001 19.2 1.9 26 28-53 15-40 (44)
15 2owr_A UDG, uracil-DNA glycosy 29.0 13 0.00043 26.6 0.2 22 4-25 186-207 (218)
16 1veh_A NIFU-like protein hirip 28.8 35 0.0012 21.0 2.2 21 30-50 12-32 (92)
17 2d7c_C RAB11 family-interactin 28.4 76 0.0026 17.2 3.7 13 40-52 16-28 (42)
18 3b4s_A Protein LUXT; APC91483. 27.7 27 0.00094 22.0 1.6 43 10-52 34-85 (94)
19 3mdn_A Glutamine aminotransfer 26.2 0.83 2.9E-05 32.7 -6.5 32 16-47 3-35 (274)
20 3myf_A Sensor protein; HPT, hi 25.8 1.2E+02 0.0041 18.6 6.3 44 6-50 64-115 (119)
21 3ts9_A Interferon-induced heli 22.7 28 0.00096 23.4 1.0 11 59-69 25-36 (138)
22 1y74_B MLIN-2/CASK, peripheral 22.3 34 0.0012 18.3 1.1 11 8-18 28-38 (50)
23 3g21_A GAG polyprotein, capsid 22.0 50 0.0017 20.2 1.9 26 37-62 41-66 (77)
24 1usu_B AHA1; chaperone/complex 20.3 96 0.0033 20.8 3.3 26 34-59 143-168 (170)
No 1
>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=99.95 E-value=6.7e-29 Score=211.22 Aligned_cols=73 Identities=64% Similarity=1.183 Sum_probs=71.9
Q ss_pred ccccCCcchhHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCccCCCCCcccCCcccccc
Q psy7099 2 VKFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGVLGY 74 (75)
Q Consensus 2 ~ly~gFvG~pH~~aivRLLGy~gia~vi~elLk~v~~~i~~~l~~yv~~l~~~mPk~~kLP~~dyGs~G~~~y 74 (75)
++|++|||.|||+||||||||+||||||+||||+++++|+++++|||++++++|||+||||++||||+||++|
T Consensus 903 ~~~~~FvG~~H~~ai~rLlg~~~l~~vi~ell~~~~~~i~~~~~~yv~~l~~~mPk~~klP~~dyGs~G~~~~ 975 (1253)
T 3p8c_A 903 GSYRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEF 975 (1253)
T ss_dssp GGGGSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHSCSBCCCCCGGGCHHHHHHH
T ss_pred hhcccccChHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhCCCCccCCchHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999987
No 2
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=61.11 E-value=2.8 Score=29.79 Aligned_cols=49 Identities=22% Similarity=0.316 Sum_probs=30.1
Q ss_pred CcchhHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCccCCCCCcccCCccc
Q psy7099 7 FVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYDYGSPGV 71 (75)
Q Consensus 7 FvG~pH~~aivRLLGy~gia~vi~elLk~v~~~i~~~l~~yv~~l~~~mPk~~kLP~~dyGs~G~ 71 (75)
..|.-|.+.|+++|.|||+-++ +.++. ++.++ +.+||. --..=||.+|+
T Consensus 21 ~~~~~~w~~I~~~l~yq~~~~~--~f~~~--------l~~~~----~~iPkk--n~ili~GPPGt 69 (212)
T 1tue_A 21 IDEGGDWRPIVQFLRYQQIEFI--TFLGA--------LKSFL----KGTPKK--NCLVFCGPANT 69 (212)
T ss_dssp SCSCCCSHHHHHHHHHTTCCHH--HHHHH--------HHHHH----HTCTTC--SEEEEESCGGG
T ss_pred ccCCCCHHHHHHHHHHcCcCHH--HHHHH--------HHHHH----hcCCcc--cEEEEECCCCC
Confidence 3455688899999999997654 11222 33333 347763 22456787775
No 3
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=59.46 E-value=8.9 Score=33.39 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=33.7
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy7099 10 AYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKT 50 (75)
Q Consensus 10 ~pH~~aivRLLGy~gia~vi~elLk~v~~~i~~~l~~yv~~ 50 (75)
..=++|+|+|+|--|+-++=|+|+.++.++++. |+-.|.+
T Consensus 833 ~~ELrAL~eLiGPYG~k~l~~~L~~hi~~~v~e-lk~~v~~ 872 (1128)
T 3p8c_B 833 ISEMRSLSELLGPYGMKFLSESLMWHISSQVAE-LKKLVVE 872 (1128)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHT
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 345799999999999999999999999999955 7766543
No 4
>1dlc_A Delta-endotoxin CRYIIIA; 2.50A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=45.53 E-value=20 Score=28.33 Aligned_cols=38 Identities=8% Similarity=0.163 Sum_probs=29.2
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy7099 13 FRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLM 52 (75)
Q Consensus 13 ~~aivRLLGy~gia~vi~elLk~v~~~i~~~l~~yv~~l~ 52 (75)
|..|+.+|.-.+ =+.+++++.+|++|+..|..++++..
T Consensus 32 ~s~i~~~lwP~~--~~w~~~~~~ve~LIdqkI~~~~~~~a 69 (584)
T 1dlc_A 32 YTNFLNTIWPSE--DPWKAFMEQVEALMDQKIADYAKNKA 69 (584)
T ss_dssp HHHHHHHTSSSH--HHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHcCCc--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777665 57799999999999988877776654
No 5
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis} PDB: 3eb7_A
Probab=42.87 E-value=11 Score=30.04 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Q psy7099 28 VMEELLKIVTSLIQGSLLQFTKTLM 52 (75)
Q Consensus 28 vi~elLk~v~~~i~~~l~~yv~~l~ 52 (75)
+.+++++.+|++|+..|..++++..
T Consensus 47 ~We~~~~~VE~LIdqkI~~~~~n~a 71 (589)
T 2qkg_A 47 QWEIFMEQVEALINQKIAEYARAKA 71 (589)
T ss_dssp HHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999988888877654
No 6
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 3tkb_A 4skn_E* 1okb_A
Probab=42.34 E-value=9.9 Score=27.25 Aligned_cols=24 Identities=33% Similarity=0.545 Sum_probs=19.0
Q ss_pred ccccCCcchhHHHHHHHHhccccH
Q psy7099 2 VKFLGFVGAYHFRAMCRLLGYQGI 25 (75)
Q Consensus 2 ~ly~gFvG~pH~~aivRLLGy~gi 25 (75)
+.++||+|.-||+-+=..|-.+|.
T Consensus 192 Sa~rgFfg~~~Fs~~N~~L~~~g~ 215 (223)
T 3fci_A 192 SVYRGFFGCRHFSKTNELLQKSGK 215 (223)
T ss_dssp TGGGTTTTCCHHHHHHHHHHHTTC
T ss_pred hcccCCCCCChHHHHHHHHHHcCC
Confidence 357899999999988777766553
No 7
>3tr7_A UDG, uracil-DNA glycosylase; DNA metabolism, hydrolase; 2.20A {Coxiella burnetii}
Probab=42.13 E-value=11 Score=27.16 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=18.5
Q ss_pred ccccCCcchhHHHHHHHHhcccc
Q psy7099 2 VKFLGFVGAYHFRAMCRLLGYQG 24 (75)
Q Consensus 2 ~ly~gFvG~pH~~aivRLLGy~g 24 (75)
+.|+||||.-||+-+=..|-.+|
T Consensus 197 Sa~rgFfg~~~Fsk~N~~L~~~g 219 (232)
T 3tr7_A 197 SAARGFLGCRHFSKANQLLHEMG 219 (232)
T ss_dssp CSSCCSTTCCHHHHHHHHHHHTT
T ss_pred ccccCCCCCCHHHHHHHHHHHcC
Confidence 35799999999998877776555
No 8
>3uf7_A UDG, uracil-DNA glycosylase; glycosylase, SSB C-terminal, base excision repair, hydrolase; HET: SO4; 1.20A {Escherichia coli} PDB: 1uug_A 1lqj_A 1lqm_A 1lqg_A 2uug_A 1eui_A 1eug_A 4eug_A 5eug_A 3eug_A 2eug_A 1flz_A 2jhq_A
Probab=41.25 E-value=10 Score=27.44 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=18.4
Q ss_pred ccccCCcchhHHHHHHHHhcccc
Q psy7099 2 VKFLGFVGAYHFRAMCRLLGYQG 24 (75)
Q Consensus 2 ~ly~gFvG~pH~~aivRLLGy~g 24 (75)
+.|+||||.-||+.+=..|-.+|
T Consensus 192 Sa~rgFfg~~~Fsk~N~~L~~~g 214 (237)
T 3uf7_A 192 SAHRGFFGCNHFVLANQWLEQRG 214 (237)
T ss_dssp TGGGTTTTCCHHHHHHHHHHHTT
T ss_pred ccccCCCCCCHHHHHHHHHHHcC
Confidence 46899999999998877775554
No 9
>1ji6_A Pesticidial crystal protein CRY3BB; toxin; 2.40A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=38.34 E-value=22 Score=28.20 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=32.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy7099 12 HFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLM 52 (75)
Q Consensus 12 H~~aivRLLGy~gia~vi~elLk~v~~~i~~~l~~yv~~l~ 52 (75)
=+..|+.+|.-.+ .=+.+++++.+|++|+..|..++++..
T Consensus 28 ~ls~i~~~lwP~~-~~~w~~~~~~ve~LIdqkI~~~~~~~a 67 (589)
T 1ji6_A 28 FYQSFLNTIWPSD-ADPWKAFMAQVEVLIDKKIEEYAKSKA 67 (589)
T ss_dssp HHHHHHHHTSCTT-CHHHHHHHHHTHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788887766 667799999999999988888777654
No 10
>2j8x_A Uracil-DNA glycosylase; hydrolase-inhibitor complex, hydrolase/inhibitor complex, EB repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP: c.18.1.1
Probab=35.47 E-value=15 Score=26.36 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=18.1
Q ss_pred ccCCcchhHHHHHHHHhccccH
Q psy7099 4 FLGFVGAYHFRAMCRLLGYQGI 25 (75)
Q Consensus 4 y~gFvG~pH~~aivRLLGy~gi 25 (75)
++||+|.-||+-+=..|-.+|.
T Consensus 203 ~rgFfg~~~Fs~~N~~L~~~g~ 224 (231)
T 2j8x_A 203 QQKFLGNNHFVLANNFLREKGL 224 (231)
T ss_dssp SCCSTTCCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCHHHHHHHHHHHcCC
Confidence 8999999999988777766553
No 11
>1i5p_A Pesticidial crystal protein CRY2AA; helical bundle, beta prism, lectin-like beta sandwich, jelly roll, toxin; 2.20A {Bacillus thuringiensis serovarkurstaki} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=32.61 E-value=32 Score=28.27 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=29.3
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy7099 12 HFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLM 52 (75)
Q Consensus 12 H~~aivRLLGy~gia~vi~elLk~v~~~i~~~l~~yv~~l~ 52 (75)
=+..|+.+|.-.+=.-+.+++++.+|++|+..|..++++..
T Consensus 73 iLS~IigiLWPsn~qdVWeefmeqVEqLIDQKIse~vrN~A 113 (633)
T 1i5p_A 73 ILSELWGIIFPSGSTNLMQDILRETEQFLNQRLNTDTLARV 113 (633)
T ss_dssp CHHHHHHHHSGGGCCHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666655443356789999999999988888876643
No 12
>3a7n_A UDG, uracil-DNA glycosylase; UNG-UGI interactions, UNG-DNA complex, citrate AS protein LI ligand binding, inhibitor design; HET: FLC; 1.95A {Mycobacterium tuberculosis H37RV} PDB: 2zhx_A*
Probab=32.52 E-value=17 Score=26.18 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=18.3
Q ss_pred cccCCcchhHHHHHHHHhccccH
Q psy7099 3 KFLGFVGAYHFRAMCRLLGYQGI 25 (75)
Q Consensus 3 ly~gFvG~pH~~aivRLLGy~gi 25 (75)
.++||+|.-||+-+=..|-.+|.
T Consensus 208 a~rgFfg~~~Fs~~N~~L~~~g~ 230 (238)
T 3a7n_A 208 ASRGFFGSRPFSRANELLVGMGA 230 (238)
T ss_dssp GGGTTTTCCHHHHHHHHHHHTTC
T ss_pred cCCCCCCCChHHHHHHHHHHcCC
Confidence 47899999999987777765553
No 13
>3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage repair, MS SGPP, hydrolase, 5-bromouracil; 1.50A {Leishmania naiffi}
Probab=30.54 E-value=19 Score=26.47 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=17.6
Q ss_pred cccCCcchhHHHHHHHHhcccc
Q psy7099 3 KFLGFVGAYHFRAMCRLLGYQG 24 (75)
Q Consensus 3 ly~gFvG~pH~~aivRLLGy~g 24 (75)
.++||||.-||+.+=..|-.+|
T Consensus 232 a~rgFfG~~hFs~~N~~L~~~g 253 (268)
T 3cxm_A 232 ANRGWFGCRCFSACNEALQRMS 253 (268)
T ss_dssp HTTTTTTCCHHHHHHHHHHHTT
T ss_pred ccCCCCCCChHHHHHHHHHHcC
Confidence 3789999999998777666555
No 14
>3m91_B Prokaryotic ubiquitin-like protein PUP; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis}
Probab=30.39 E-value=31 Score=19.25 Aligned_cols=26 Identities=12% Similarity=0.365 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy7099 28 VMEELLKIVTSLIQGSLLQFTKTLMD 53 (75)
Q Consensus 28 vi~elLk~v~~~i~~~l~~yv~~l~~ 53 (75)
-++.||+-|.+.+...-..||+++..
T Consensus 15 ~~D~lLDeId~vLE~NAeeFV~~fVQ 40 (44)
T 3m91_B 15 ETDDLLDEIDDVLEENAEDFVRAYVQ 40 (44)
T ss_dssp HHHHHHHHHHHHHHHTC---------
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 35889999999998888888887653
No 15
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A 3nt7_C
Probab=29.01 E-value=13 Score=26.60 Aligned_cols=22 Identities=18% Similarity=0.088 Sum_probs=15.8
Q ss_pred ccCCcchhHHHHHHHHhccccH
Q psy7099 4 FLGFVGAYHFRAMCRLLGYQGI 25 (75)
Q Consensus 4 y~gFvG~pH~~aivRLLGy~gi 25 (75)
++||+|.-||+-+=..|-.+|.
T Consensus 186 ~rgFfg~~~Fs~~N~~L~~~g~ 207 (218)
T 2owr_A 186 DRQFEKDRSFEIINVLLELDNK 207 (218)
T ss_dssp ---CCCCCCCHHHHHHHHTTTS
T ss_pred CCCCCCCChHHHHHHHHHHcCC
Confidence 6899999999988777776664
No 16
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=28.82 E-value=35 Score=21.02 Aligned_cols=21 Identities=10% Similarity=0.341 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhHHHHHHH
Q psy7099 30 EELLKIVTSLIQGSLLQFTKT 50 (75)
Q Consensus 30 ~elLk~v~~~i~~~l~~yv~~ 50 (75)
+++.+.++..|...++|++++
T Consensus 12 ~~~~~~I~~~L~~~IRP~L~~ 32 (92)
T 1veh_A 12 DEVVAMIKELLDTRIRPTVQE 32 (92)
T ss_dssp CHHHHHHHHHHHHTTHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHh
Confidence 356677888887778888763
No 17
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=28.37 E-value=76 Score=17.19 Aligned_cols=13 Identities=15% Similarity=0.327 Sum_probs=10.8
Q ss_pred HHhhHHHHHHHHH
Q psy7099 40 IQGSLLQFTKTLM 52 (75)
Q Consensus 40 i~~~l~~yv~~l~ 52 (75)
++..++.|+++|.
T Consensus 16 ~n~~Le~YID~LL 28 (42)
T 2d7c_C 16 INFRLQDYIDRII 28 (42)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5567999999987
No 18
>3b4s_A Protein LUXT; APC91483.1, LUXT domain, structural genomics, PSI-2, protein structure initiative; 3.10A {Vibrio parahaemolyticus rimd 2210633}
Probab=27.66 E-value=27 Score=21.97 Aligned_cols=43 Identities=23% Similarity=0.150 Sum_probs=25.1
Q ss_pred hhHHHHHHHHhcc-----ccHHH----HHHHHHHHHHHHHHhhHHHHHHHHH
Q psy7099 10 AYHFRAMCRLLGY-----QGIAV----VMEELLKIVTSLIQGSLLQFTKTLM 52 (75)
Q Consensus 10 ~pH~~aivRLLGy-----~gia~----vi~elLk~v~~~i~~~l~~yv~~l~ 52 (75)
-|+|.||+||+=. .+-.. -++.+.+.+.+.+-..-+.-++.|.
T Consensus 34 ~~eF~aIlrL~F~hi~~~~~~~~f~~~~i~~l~~~~~~~~G~~~~k~le~Li 85 (94)
T 3b4s_A 34 DSEFLAILRLLFHHIVTSESAHEFAANGIDRLYKMVESQFGSGGDKELEWLI 85 (94)
T ss_dssp SHHHHHHHHHHHHHHHHSCCHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHccCCccHHHHhHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 4889999998743 22111 1355666666666555555555554
No 19
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi}
Probab=26.16 E-value=0.83 Score=32.73 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=15.7
Q ss_pred HHHHhccccHHHHHHHHHHHH-HHHHHhhHHHH
Q psy7099 16 MCRLLGYQGIAVVMEELLKIV-TSLIQGSLLQF 47 (75)
Q Consensus 16 ivRLLGy~gia~vi~elLk~v-~~~i~~~l~~y 47 (75)
|||++||.|-+.-+++||... .++++.+.++.
T Consensus 3 MCR~~~y~g~~~~l~~ll~~p~~sL~~qs~~~~ 35 (274)
T 3mdn_A 3 LCRWAAYHGTPIFLEDVISRPGHSLIAQSAHAE 35 (274)
T ss_dssp -CCEEEEEEEEEEGGGTC---------------
T ss_pred ccceeeecCCCccHHHHHhCccccHHHHhhhhh
Confidence 899999999888889988744 77887666554
No 20
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=25.78 E-value=1.2e+02 Score=18.59 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=31.4
Q ss_pred CCcchhHHHHHHHHhccc--------cHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy7099 6 GFVGAYHFRAMCRLLGYQ--------GIAVVMEELLKIVTSLIQGSLLQFTKT 50 (75)
Q Consensus 6 gFvG~pH~~aivRLLGy~--------gia~vi~elLk~v~~~i~~~l~~yv~~ 50 (75)
+++|.|-+..+|.-|-.. .+.=.+.+|++.++.+++ .++.|+..
T Consensus 64 ~~~Ga~~L~~~~~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~-~~~~~l~~ 115 (119)
T 3myf_A 64 CYCGVPTTQRLCQEIESALKRQTPVEDLEPEILELLDELTKVES-AVKQVLSQ 115 (119)
T ss_dssp TTTTCHHHHHHHHHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHcCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 679999999999887431 344556778887777764 47777764
No 21
>3ts9_A Interferon-induced helicase C domain-containing P; helix bundle, fancm helicase, super family 2 helicase, SF2 H DEXD/H helicase; 2.00A {Mus musculus}
Probab=22.75 E-value=28 Score=23.40 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=8.0
Q ss_pred CCC-CCcccCCc
Q psy7099 59 CKL-PRYDYGSP 69 (75)
Q Consensus 59 ~kL-P~~dyGs~ 69 (75)
|++ |..||||.
T Consensus 25 ~~l~p~~dfGTQ 36 (138)
T 3ts9_A 25 CQKSPMSDFGTQ 36 (138)
T ss_dssp TTCCCSSCTTSH
T ss_pred HcCCCCCCCcch
Confidence 445 68899985
No 22
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=22.34 E-value=34 Score=18.29 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=8.0
Q ss_pred cchhHHHHHHH
Q psy7099 8 VGAYHFRAMCR 18 (75)
Q Consensus 8 vG~pH~~aivR 18 (75)
.+.|||+|+..
T Consensus 28 L~~PHfqaLl~ 38 (50)
T 1y74_B 28 LTQPHFMALLQ 38 (50)
T ss_dssp HHSHHHHHHHH
T ss_pred HcCHHHHHHHH
Confidence 45799998653
No 23
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=22.01 E-value=50 Score=20.22 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=19.3
Q ss_pred HHHHHhhHHHHHHHHHHhCCccCCCC
Q psy7099 37 TSLIQGSLLQFTKTLMDAMPKQCKLP 62 (75)
Q Consensus 37 ~~~i~~~l~~yv~~l~~~mPk~~kLP 62 (75)
+.++...-.|-++.++.++||.-.+|
T Consensus 41 ~tLl~QNANpdCk~ilk~l~~~~~~~ 66 (77)
T 3g21_A 41 IDCFRQKSQPDIQQLIRTAPSTLTTP 66 (77)
T ss_dssp HHHHHHHSCHHHHHHHTTSCTTCCSH
T ss_pred HHHHHHhcCHHHHHHHHhCCCCCCCH
Confidence 33443446788999999999987765
No 24
>1usu_B AHA1; chaperone/complex, chaperone, activator, HSP90; 2.15A {Saccharomyces cerevisiae} SCOP: d.83.2.1 PDB: 1usv_B
Probab=20.33 E-value=96 Score=20.82 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=18.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHhCCccC
Q psy7099 34 KIVTSLIQGSLLQFTKTLMDAMPKQC 59 (75)
Q Consensus 34 k~v~~~i~~~l~~yv~~l~~~mPk~~ 59 (75)
+.....|...+..|+++|.+.-|+.+
T Consensus 143 ~~~~p~lr~~l~~f~~eL~~~~~~d~ 168 (170)
T 1usu_B 143 SELLPKLRQIFQQFGKDLLATHGNDI 168 (170)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHhHHHHHHHHHHHHHHHHHhccccC
Confidence 35566777888889999988777654
Done!