RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7099
(75 letters)
>gnl|CDD|218846 pfam05994, FragX_IP, Cytoplasmic Fragile-X interacting family.
CYFIP1/2 (Cytoplasmic fragile X mental retardation
interacting protein) like proteins for a highly
conserved protein family. The function of CYFIPs is
unclear, but CYFIP interaction with fragile X mental
retardation interacting protein (FMRP) involves the
domain of FMRP which also mediating homo- and
heteromerization.
Length = 815
Score = 96.7 bits (241), Expect = 2e-25
Identities = 37/69 (53%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 6 GFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPRYD 65
F+G HFRA+CRLLGY GIAV+ +ELLK L++ ++L F K M MPK +LP D
Sbjct: 515 NFIGPEHFRALCRLLGYGGIAVLSQELLK----LLEEAILPFVKIYMSVMPKITRLPPLD 570
Query: 66 YGSPGVLGY 74
YGS GV Y
Sbjct: 571 YGSHGVYDY 579
>gnl|CDD|215574 PLN03099, PIR, Protein PIR; Provisional.
Length = 1232
Score = 34.2 bits (78), Expect = 0.002
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Query: 4 FLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLPR 63
F G H A+ +LLG + + ++ LL ++ I L + L +AMPK LP
Sbjct: 863 HSKFFGLPHMFAIVKLLGSRSLPWLIRALLDHLSQKITT-LEPMIEDLREAMPKAIGLPS 921
Query: 64 YDYGSPGVL 72
+D G G +
Sbjct: 922 FDGGVAGCM 930
>gnl|CDD|238889 cd01908, YafJ, Glutamine amidotransferases class-II
(Gn-AT)_YafJ-type. YafJ is a glutamine
amidotransferase-like protein of unknown function found
in prokaryotes, eukaryotes and archaea. YafJ has a
conserved structural fold similar to those of other
class II glutamine amidotransferases including
lucosamine-fructose 6-phosphate synthase (GLMS or
GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), beta lactam synthetase (beta-LS) and glutamate
synthase (GltS). The YafJ fold is also somwhat similar
to the Ntn (N-terminal nucleophile) hydrolase fold of
the proteasomal alpha and beta subunits.
Length = 257
Score = 32.4 bits (74), Expect = 0.010
Identities = 11/18 (61%), Positives = 13/18 (72%)
Query: 16 MCRLLGYQGIAVVMEELL 33
MCRLLGY G + +E LL
Sbjct: 1 MCRLLGYSGAPIPLEPLL 18
>gnl|CDD|132483 TIGR03442, TIGR03442, ergothioneine biosynthesis protein EgtC.
Members of this strictly bacterial protein family show
similarity to class II glutamine amidotransferases (see
pfamam family pfam00310). They are distinguished by
appearing in a genome context with, and usually
adjacent to or between, members of families TIGR03438
(an uncharacterized methyltransferase) and TIGR03440
(an uncharacterized protein) [Biosynthesis of
cofactors, prosthetic groups, and carriers, Glutathione
and analogs].
Length = 251
Score = 29.7 bits (67), Expect = 0.095
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 16 MCRLLGYQGIAVVMEELL 33
MCR L Y G V + +LL
Sbjct: 1 MCRHLAYLGAPVSLADLL 18
>gnl|CDD|119375 cd06413, GH25_muramidase_1, Uncharacterized bacterial muramidase
containing a glycosyl hydrolase family 25 (GH25)
catalytic domain. Endo-N-acetylmuramidases are
lysozymes (also referred to as peptidoglycan
hydrolases) that degrade bacterial cell walls by
catalyzing the hydrolysis of 1,4-beta-linkages between
N-acetylmuramic acid and N-acetyl-D-glucosamine
residues.
Length = 191
Score = 27.2 bits (61), Expect = 0.55
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 7 FVGAYHFRAMCR 18
GAYHF CR
Sbjct: 56 PRGAYHFFTFCR 67
>gnl|CDD|223199 COG0121, COG0121, Predicted glutamine amidotransferase [General
function prediction only].
Length = 252
Score = 25.0 bits (55), Expect = 4.3
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 16 MCRLLGYQG 24
MCRLLG G
Sbjct: 1 MCRLLGMHG 9
>gnl|CDD|233162 TIGR00871, zwf, glucose-6-phosphate 1-dehydrogenase. This enzyme
(EC 1.1.1.49) acts on glucose 6-phospate and reduces
NADP(+). An alternate name appearing in the literature
for the human enzyme, based on a slower activity with
beta-D-glucose, is glucose 1-dehydrogenase (EC
1.1.1.47), but that name more properly describes a
subfamily of the short chain dehydrogenases/reductases
family. This is a well-studied enzyme family, with
sequences available from well over 50 species. The
trusted cutoff is set above the score for the Drosophila
melanogaster CG7140 gene product, a homolog of unknown
function. G6PD homologs from the bacteria Aquifex
aeolicus and Helicobacter pylori lack several motifs
well conserved most other members, were omitted from the
seed alignment, and score well below the trusted cutoff
[Energy metabolism, Pentose phosphate pathway].
Length = 482
Score = 24.6 bits (54), Expect = 5.7
Identities = 7/17 (41%), Positives = 7/17 (41%)
Query: 54 AMPKQCKLPRYDYGSPG 70
A K P Y GS G
Sbjct: 448 AANKGPSPPNYPAGSWG 464
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.330 0.145 0.441
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,834,484
Number of extensions: 285257
Number of successful extensions: 353
Number of sequences better than 10.0: 1
Number of HSP's gapped: 351
Number of HSP's successfully gapped: 10
Length of query: 75
Length of database: 10,937,602
Length adjustment: 45
Effective length of query: 30
Effective length of database: 8,941,672
Effective search space: 268250160
Effective search space used: 268250160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.1 bits)