RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7099
(75 letters)
>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization,
protein binding; 2.29A {Homo sapiens}
Length = 1253
Score = 102 bits (255), Expect = 1e-27
Identities = 47/72 (65%), Positives = 61/72 (84%)
Query: 3 KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLMDAMPKQCKLP 62
+ FVG HF+ +CRLLGYQGIAVVMEELLK+V SL+QG++LQ+ KTLM+ MPK C+LP
Sbjct: 904 SYRNFVGPPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLP 963
Query: 63 RYDYGSPGVLGY 74
R++YGSPG+L +
Sbjct: 964 RHEYGSPGILEF 975
>3mdn_A Glutamine aminotransferase class-II domain protei; structural
genomics, PSI-2, protein structure initiative; 2.09A
{Ruegeria pomeroyi}
Length = 274
Score = 34.0 bits (77), Expect = 0.002
Identities = 9/31 (29%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 15 AMCRLLGYQGIAVVMEELLK-IVTSLIQGSL 44
++CR Y G + +E+++ SLI S
Sbjct: 2 SLCRWAAYHGTPIFLEDVISRPGHSLIAQSA 32
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.085
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 12/46 (26%)
Query: 4 FLGFVGAYHFRAMCRLLGY---------QGIAVVMEELLKIVTSLI 40
+G + H+ +LLG+ +G + +VT++
Sbjct: 240 LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQG---LVTAVA 282
Score = 23.9 bits (51), Expect = 6.4
Identities = 8/50 (16%), Positives = 16/50 (32%), Gaps = 16/50 (32%)
Query: 3 KFLGFVGAYHFRAMCRLLGYQGIAVVMEELLKIVTSLIQGSLLQFTKTLM 52
KFLG+V + +++L + L +F +
Sbjct: 63 KFLGYV-SSLVE--------PSKVGQFDQVLNLC-------LTEFENCYL 96
>3p8c_B NCK-associated protein 1; actin polymerization, protein binding;
2.29A {Homo sapiens}
Length = 1128
Score = 27.8 bits (61), Expect = 0.34
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 14 RAMCRLLGYQGIAVVMEELLKIVTSLIQ 41
R++ LLG G+ + E L+ ++S +
Sbjct: 837 RSLSELLGPYGMKFLSESLMWHISSQVA 864
>3olo_A Two-component sensor histidine kinase; structural genomics,
PSI-2, protein structure initiative, MI center for
structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Length = 118
Score = 25.6 bits (57), Expect = 1.1
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 5/21 (23%)
Query: 14 RAMCRLLGYQGIAVVMEELLK 34
A CR+ Y E+LL
Sbjct: 40 DATCRMTEYS-----REQLLS 55
>1te5_A Conserved hypothetical protein; glutamine amidotransferase,
amidotransferase, structural genomics, PSI, protein
structure initiative; 2.00A {Pseudomonas aeruginosa
PAO1} SCOP: d.153.1.1
Length = 257
Score = 25.8 bits (56), Expect = 1.1
Identities = 5/9 (55%), Positives = 5/9 (55%)
Query: 16 MCRLLGYQG 24
MC LLG
Sbjct: 1 MCELLGMSA 9
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase;
2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A*
1u54_A* 3eqr_A* 3eqp_B*
Length = 291
Score = 25.3 bits (56), Expect = 2.2
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 25 IAVVMEELLKIVTSLI-QGSLLQF 47
VV+ +K+VT L GSLL
Sbjct: 87 YGVVLTPPMKMVTELAPLGSLLDR 110
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain,
HTR-like protei protein structure initiative; HET: MSE
I3A; 1.73A {Haloarcula marismortui atcc 43049}
Length = 126
Score = 24.8 bits (55), Expect = 2.3
Identities = 6/20 (30%), Positives = 8/20 (40%), Gaps = 5/20 (25%)
Query: 14 RAMCRLLGYQGIAVVMEELL 33
+ C LGY E+L
Sbjct: 44 QRFCAELGYD-----ESEVL 58
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2,
protein structure initiati northeast structural
genomics consortium; 2.60A {Desulfitobacterium
hafniense}
Length = 126
Score = 24.5 bits (54), Expect = 2.9
Identities = 7/20 (35%), Positives = 10/20 (50%), Gaps = 5/20 (25%)
Query: 14 RAMCRLLGYQGIAVVMEELL 33
A+ + LGY EEL+
Sbjct: 26 TAVPKKLGYT-----HEELM 40
>2r78_A Sensor protein; sensory box sensor histidine kinase/response
regulator, structural genomics, PSI, MCSG; 1.60A
{Geobacter sulfurreducens pca}
Length = 117
Score = 24.4 bits (54), Expect = 3.0
Identities = 6/21 (28%), Positives = 9/21 (42%), Gaps = 5/21 (23%)
Query: 14 RAMCRLLGYQGIAVVMEELLK 34
A+C +GY +E L
Sbjct: 38 PAICSAIGYT-----RDEFLA 53
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG,
structural genomics, center for structural genomics;
1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Length = 120
Score = 24.4 bits (54), Expect = 3.3
Identities = 1/20 (5%), Positives = 5/20 (25%), Gaps = 5/20 (25%)
Query: 14 RAMCRLLGYQGIAVVMEELL 33
+ + +L+
Sbjct: 29 DELAAIFRCA-----RADLI 43
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase,
transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A*
3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A*
3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A*
2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A*
Length = 289
Score = 24.2 bits (53), Expect = 5.0
Identities = 6/24 (25%), Positives = 8/24 (33%), Gaps = 1/24 (4%)
Query: 25 IAVVMEELLKIVTSLIQ-GSLLQF 47
+ L IVT + SL
Sbjct: 86 MGYSTAPQLAIVTQWCEGSSLYHH 109
>3jql_A Phospholipase A2 isoform 3; phospholipase A2, hexapeptide,
hydrolase, calcium, disulfide bond, lipid degradation,
metal-binding, secreted; 1.20A {Naja sagittifera} PDB:
1mf4_A 3jq5_A 1ln8_A 3jti_A 3nju_A* 3osh_A* 3q4y_A
1t37_A 1zm6_A 3gci_A 1yxl_A 1oxr_A 1td7_A* 1sz8_A
1a3d_A 1a3f_A 1psh_A 2osh_A 1poa_A 1pob_A* ...
Length = 119
Score = 23.7 bits (51), Expect = 6.8
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 43 SLLQFTKTLMDAMPKQCKLPRYDYG 67
+L QF + +P + DYG
Sbjct: 1 NLYQFKNMIQCTVPSRSWADFADYG 25
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.145 0.441
Gapped
Lambda K H
0.267 0.0512 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,178,289
Number of extensions: 53425
Number of successful extensions: 149
Number of sequences better than 10.0: 1
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 16
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 51 (23.9 bits)