BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy71
(218 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F66|C Chain C, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
pdb|1F66|G Chain G, 2.6 A Crystal Structure Of A Nucleosome Core Particle
Containing The Variant Histone H2a.Z
Length = 128
Score = 91.7 bits (226), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/54 (83%), Positives = 48/54 (88%), Gaps = 3/54 (5%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEVRR 54
VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG G+ P + +
Sbjct: 66 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG---GVIPHIHK 116
>pdb|2JSS|A Chain A, Nmr Structure Of Chaperone Chz1 Complexed With Histone
H2a.Z-H2b
Length = 192
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 46/52 (88%), Gaps = 3/52 (5%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEV 52
VLELAGNA+KDLKVKRITPRHLQLAIRGD+ELDSLI+ATIA G G+ P +
Sbjct: 144 VLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIRATIASG---GVLPHI 192
>pdb|1EQZ|A Chain A, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1EQZ|E Chain E, X-Ray Structure Of The Nucleosome Core Particle At 2.5 A
Resolution
pdb|1HQ3|A Chain A, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1HQ3|E Chain E, Crystal Structure Of The Histone-Core-Octamer In
KclPHOSPHATE
pdb|1TZY|A Chain A, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|1TZY|E Chain E, Crystal Structure Of The Core-Histone Octamer To 1.90
Angstrom Resolution
pdb|2ARO|A Chain A, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
pdb|2ARO|E Chain E, Crystal Structure Of The Native Histone Octamer To 2.1
Angstrom Resolution, Crystalised In The Presence Of
S-nitrosoglutathione
Length = 129
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA G G+ P ++
Sbjct: 63 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG---GVLPNIQ 113
>pdb|2HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein
pdb|3C9K|A Chain A, Model Of Histone Octamer Tubular Crystals
pdb|3C9K|E Chain E, Model Of Histone Octamer Tubular Crystals
Length = 128
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA G G+ P ++
Sbjct: 62 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG---GVLPNIQ 112
>pdb|2NQB|C Chain C, Drosophila Nucleosome Structure
pdb|2NQB|G Chain G, Drosophila Nucleosome Structure
Length = 123
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 39/54 (72%), Gaps = 4/54 (7%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKA-TIAGGARFGLYPEVR 53
VLELAGNA++D K RI PRHLQLAIR DEEL+ L+ TIA G G+ P ++
Sbjct: 61 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQG---GVLPNIQ 111
>pdb|2PYO|C Chain C, Drosophila Nucleosome Core
pdb|2PYO|G Chain G, Drosophila Nucleosome Core
Length = 120
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 39/54 (72%), Gaps = 4/54 (7%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKA-TIAGGARFGLYPEVR 53
VLELAGNA++D K RI PRHLQLAIR DEEL+ L+ TIA G G+ P ++
Sbjct: 61 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQG---GVLPNIQ 111
>pdb|2CV5|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
pdb|2CV5|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Length = 130
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA G G+ P ++
Sbjct: 63 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQG---GVLPNIQ 113
>pdb|3A6N|C Chain C, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3A6N|G Chain G, The Nucleosome Containing A Testis-Specific Histone
Variant, Human H3t
pdb|3AFA|C Chain C, The Human Nucleosome Structure
pdb|3AFA|G Chain G, The Human Nucleosome Structure
pdb|3AV1|C Chain C, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV1|G Chain G, The Human Nucleosome Structure Containing The Histone
Variant H3.2
pdb|3AV2|C Chain C, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AV2|G Chain G, The Human Nucleosome Structure Containing The Histone
Variant H3.3
pdb|3AN2|C Chain C, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AN2|G Chain G, The Structure Of The Centromeric Nucleosome Containing
Cenp-A
pdb|3AYW|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AYW|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k56q Mutation
pdb|3AZE|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZE|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k64q Mutation
pdb|3AZF|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZF|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k79q Mutation
pdb|3AZG|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZG|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k115q Mutation
pdb|3AZH|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZH|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H3k122q Mutation
pdb|3AZI|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZI|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k31q Mutation
pdb|3AZJ|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZJ|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k44q Mutation
pdb|3AZK|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZK|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k59q Mutation
pdb|3AZL|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZL|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k77q Mutation
pdb|3AZM|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZM|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k79q Mutation
pdb|3AZN|C Chain C, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
pdb|3AZN|G Chain G, Crystal Structure Of Human Nucleosome Core Particle
Containing H4k91q Mutation
Length = 133
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA G G+ P ++
Sbjct: 66 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQG---GVLPNIQ 116
>pdb|2XQL|A Chain A, Fitting Of The H2a-H2b Histones In The Electron
Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
Histones (1:5).
pdb|2XQL|C Chain C, Fitting Of The H2a-H2b Histones In The Electron
Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
Histones (1:5).
pdb|2XQL|E Chain E, Fitting Of The H2a-H2b Histones In The Electron
Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
Histones (1:5).
pdb|2XQL|G Chain G, Fitting Of The H2a-H2b Histones In The Electron
Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
Histones (1:5).
pdb|2XQL|I Chain I, Fitting Of The H2a-H2b Histones In The Electron
Microscopy Map Of The Complex Nucleoplasmin:h2a-H2b
Histones (1:5)
Length = 91
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 35/44 (79%), Gaps = 1/44 (2%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 43
+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA G
Sbjct: 48 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 91
>pdb|1HIO|A Chain A, Histone Octamer (Chicken), Chromosomal Protein, Alpha
Carbons Only
Length = 95
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 35/45 (77%), Gaps = 1/45 (2%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGA 44
+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA G
Sbjct: 48 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGG 92
>pdb|3C1B|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1B|G Chain G, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|C Chain C, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
pdb|3C1C|G Chain G, The Effect Of H3 K79 Dimethylation And H4 K20
Trimethylation On Nucleosome And Chromatin Structure
Length = 129
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ + TIA G G+ P ++
Sbjct: 62 ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQG---GVLPNIQ 112
>pdb|2F8N|K Chain K, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 149
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
+LELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA G G+ P ++
Sbjct: 82 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQG---GVLPNIQ 132
>pdb|1ZBB|C Chain C, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|G Chain G, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|CC Chain c, Structure Of The 4_601_167 Tetranucleosome
pdb|1ZBB|GG Chain g, Structure Of The 4_601_167 Tetranucleosome
pdb|2FJ7|C Chain C, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|2FJ7|G Chain G, Crystal Structure Of Nucleosome Core Particle Containing A
Poly (Da.Dt) Sequence Element
pdb|3LJA|C Chain C, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3LJA|G Chain G, Using Soft X-Rays For A Detailed Picture Of Divalent Metal
Binding In The Nucleosome
pdb|3KXB|C Chain C, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3KXB|G Chain G, Structural Characterization Of H3k56q Nucleosomes And
Nucleosomal Arrays
pdb|3MVD|C Chain C, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|G Chain G, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3TU4|C Chain C, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3TU4|G Chain G, Crystal Structure Of The Sir3 Bah Domain In Complex With A
Nucleosome Core Particle.
pdb|3REH|C Chain C, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REH|G Chain G, 2.5 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145)
pdb|3REI|C Chain C, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REI|G Chain G, 2.65 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 145 Bp Alpha-Satellite Dna
(Ncp145) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REJ|C Chain C, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REJ|G Chain G, 2.55 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b)
pdb|3REK|C Chain C, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REK|G Chain G, 2.6 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Oxaliplatin
pdb|3REL|C Chain C, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3REL|G Chain G, 2.7 Angstrom Crystal Structure Of The Nucleosome Core
Particle Assembled With A 146 Bp Alpha-Satellite Dna
(Ncp146b) Derivatized With Triamminechloroplatinum(Ii)
Chloride
pdb|3UT9|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UT9|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With A Palindromic Widom '601' Derivative (Ncp-601l)
pdb|3UTA|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTA|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With An Alpha- Satellite Sequence Containing Two Ttaaa
Elements (Ncp-Ta2)
pdb|3UTB|C Chain C, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
pdb|3UTB|G Chain G, Crystal Structure Of Nucleosome Core Particle Assembled
With The 146b Alpha-Satellite Sequence (Ncp146b)
Length = 129
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ + TIA G G+ P ++
Sbjct: 62 ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQG---GVLPNIQ 112
>pdb|3KWQ|C Chain C, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
pdb|3KWQ|G Chain G, Structural Characterization Of H3k56q Nucleosomes And
Nucleo Arrays
Length = 107
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ + TIA G G+ P ++
Sbjct: 49 ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQG---GVLPNIQ 99
>pdb|1M18|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M18|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M19|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|C Chain C, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1M1A|G Chain G, Ligand Binding Alters The Structure And Dynamics Of
Nucleosomal Dna
pdb|1P34|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P34|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3A|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3B|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3F|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3G|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3I|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3K|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3L|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3M|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3O|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|C Chain C, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
pdb|1P3P|G Chain G, Crystallographic Studies Of Nucleosome Core Particles
Containing Histone 'sin' Mutants
Length = 129
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ + TIA G G+ P ++
Sbjct: 62 ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQG---GVLPNIQ 112
>pdb|1AOI|C Chain C, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
pdb|1AOI|G Chain G, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b)
And 146 Bp Long Dna Fragment
Length = 116
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ + TIA G G+ P ++
Sbjct: 59 ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQG---GVLPNIQ 109
>pdb|1S32|C Chain C, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|1S32|G Chain G, Molecular Recognition Of The Nucleosomal 'supergroove'
pdb|2NZD|C Chain C, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|2NZD|G Chain G, Nucleosome Core Particle Containing 145 Bp Of Dna
pdb|3KUY|C Chain C, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3KUY|G Chain G, Dna Stretching In The Nucleosome Facilitates Alkylation By
An Intercalating Antitumor Agent
pdb|3MGP|C Chain C, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGP|G Chain G, Binding Of Cobalt Ions To The Nucleosome Core Particle
pdb|3MGQ|C Chain C, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGQ|G Chain G, Binding Of Nickel Ions To The Nucleosome Core Particle
pdb|3MGR|C Chain C, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGR|G Chain G, Binding Of Rubidium Ions To The Nucleosome Core Particle
pdb|3MGS|C Chain C, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3MGS|G Chain G, Binding Of Cesium Ions To The Nucleosome Core Particle
pdb|3LZ0|C Chain C, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ0|G Chain G, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 1)
pdb|3LZ1|C Chain C, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3LZ1|G Chain G, Crystal Structure Of Nucleosome Core Particle Composed Of
The Widom 601 Dna Sequence (Orientation 2)
pdb|3MNN|C Chain C, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
pdb|3MNN|G Chain G, A Ruthenium Antitumour Agent Forms Specific Histone
Protein Adducts In The Nucleosome Core
Length = 119
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ + TIA G G+ P ++
Sbjct: 62 ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQG---GVLPNIQ 112
>pdb|1KX3|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX3|G Chain G, X-Ray Structure Of The Nucleosome Core Particle, Ncp146,
At 2.0 A Resolution
pdb|1KX4|C Chain C, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX4|G Chain G, X-Ray Structure Of The Nucleosome Core Particle, Ncp146b,
At 2.6 A Resolution
pdb|1KX5|C Chain C, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|1KX5|G Chain G, X-ray Structure Of The Nucleosome Core Particle, Ncp147,
At 1.9 A Resolution
pdb|3B6F|C Chain C, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6F|G Chain G, Nucleosome Core Particle Treated With Cisplatin
pdb|3B6G|C Chain C, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3B6G|G Chain G, Nucleosome Core Particle Treated With Oxaliplatin
pdb|3LEL|C Chain C, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|G Chain G, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|M Chain M, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3LEL|Q Chain Q, Structural Insight Into The Sequence-Dependence Of
Nucleosom Positioning
pdb|3O62|C Chain C, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
pdb|3O62|G Chain G, Nucleosome Core Particle Modified With A Cisplatin
1,3-Cis-{pt(Nh3) 2}2+-D(Gptpg) Intrastrand Cross-Link
Length = 128
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 40/54 (74%), Gaps = 4/54 (7%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
+LELAGNA++D K RI PRHLQLA+R DEEL+ L+ + TIA G G+ P ++
Sbjct: 62 ILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQG---GVLPNIQ 112
>pdb|1ID3|C Chain C, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
pdb|1ID3|G Chain G, Crystal Structure Of The Yeast Nucleosome Core Particle
Reveals Fundamental Differences In Inter-Nucleosome
Interactions
Length = 131
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 4/56 (7%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVRRD 55
+LELAGNA++D K RI PRHLQLAIR D+EL+ L+ TIA G G+ P + ++
Sbjct: 63 ILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQG---GVLPNIHQN 115
>pdb|1ZLA|C Chain C, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
pdb|1ZLA|G Chain G, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana
Peptide Bound To The Nucleosomal Core
Length = 129
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 38/54 (70%), Gaps = 4/54 (7%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGARFGLYPEVR 53
+LELAGN +D K RI PRHLQLA+R DEEL+ L+ + TIA G G+ P ++
Sbjct: 62 ILELAGNWERDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQG---GVLPNIQ 112
>pdb|1U35|C Chain C, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|1U35|G Chain G, Crystal Structure Of The Nucleosome Core Particle
Containing The Histone Domain Of Macroh2a
pdb|2F8N|G Chain G, 2.9 Angstrom X-Ray Structure Of Hybrid Macroh2a
Nucleosomes
Length = 120
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 39/54 (72%), Gaps = 2/54 (3%)
Query: 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKA-TIA-GGARFGLYPEV 52
+LELA NA++D K R+TPRH+ LA+ DEEL+ L+K TIA GG ++PE+
Sbjct: 60 ILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPEL 113
>pdb|1CUZ|A Chain A, Cutinase, L81g, L182g Mutant
Length = 214
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSGIVAAP 187
>pdb|1CUI|A Chain A, Cutinase, S120a Mutant
Length = 214
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1CUE|A Chain A, Cutinase, Q121l Mutant
Length = 197
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 115 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 171
>pdb|1XZE|A Chain A, Fusarium Solani Cutinase Mutant With Ser 92 Replaced By
Cys
Length = 214
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1XZD|A Chain A, Fusarium Solani Cutinase Mutant With Ser 213 Replaced By
Cys
Length = 214
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1XZA|A Chain A, Fusarium Solani Cutinase Mutant With Ser 129 Replaced By
Cys
pdb|1XZB|A Chain A, Fusarium Solani Cutinase Mutant With Ser 129 Replaced By
Cys Complex With Mercury Acetate
pdb|1XZC|A Chain A, Fusarium Solani Cutinase Mutant With Ser 129 Replaced By
Cys Complex With Para-Sulfurousphenyl Mercury
Length = 214
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1CUU|A Chain A, Cutinase, A199c Mutant
Length = 214
Score = 27.7 bits (60), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1XZI|A Chain A, Fusarium Solani Cutinase Mutant With Thr 119 Replaced By
His
Length = 214
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1CUJ|A Chain A, Cutinase, S120c Mutant
Length = 214
Score = 27.7 bits (60), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1AGY|A Chain A, The 1.15 Angstrom Refined Structure Of Fusarium Solani
Pisi Cutinase
Length = 200
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 117 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 173
>pdb|1FFD|A Chain A, Contribution Of Cutinase Serine 42 Side Chain To The
Stabilization Of The Oxyanion Transition State
Length = 214
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|2CUT|A Chain A, Cutinase, A Lipolytic Enzyme With A Preformed Oxyanion
Hole
Length = 198
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 117 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 173
>pdb|1XZF|A Chain A, Fusarium Solani Cutinase Mutant With Thr 144 Replaced By
Cys
Length = 214
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGCVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|3QPA|A Chain A, Structure Of Fusarium Solani Cutinase Expressed In Pichia
Pastoris
pdb|3QPC|A Chain A, Structure Of Fusarium Solani Cutinase Expressed In Pichia
Pastoris, Crystallized In The Presence Of Paraoxon
Length = 197
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 116 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 172
>pdb|1CUS|A Chain A, Fusarium Solani Cutinase Is A Lipolytic Enzyme With A
Catalytic Serine Accessible To Solvent
Length = 200
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 117 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 173
>pdb|1FFE|A Chain A, Contribution Of Cutinase Serine 42 Side Chain To The
Stabilization Of The Oxyanion Transition State
Length = 214
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1FFC|A Chain A, Contribution Of Cutinase Serine 42 Side Chain To The
Stabilization Of The Oxyanion Transition State
Length = 214
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1FFB|A Chain A, Contribution Of Cutinase Serine 42 Side Chain To The
Stabilization Of The Oxyanion Transition State
Length = 214
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1XZJ|A Chain A, Fusarium Solani Cutinase Mutant With Thr 38 Replaced By
Phe
Length = 214
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1XZG|A Chain A, Fusarium Solani Cutinase Mutant With Thr 45 Replaced By
Ala
Length = 214
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1XZK|A Chain A, Fusarium Solani Cutinase Complex With
Di(isopropyl)phosphate
pdb|1XZK|B Chain B, Fusarium Solani Cutinase Complex With
Di(isopropyl)phosphate
pdb|1XZL|A Chain A, Fusarium Solani Cutinase Complex With N-hexylphosphonate
Ethyl Ester
pdb|1XZM|A Chain A, Fusarium Solani Cutinase Complex With N-Undecyl O-Methyl
Chloro Phosphonate Ester
Length = 214
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1CUV|A Chain A, Cutinase, A85f Mutant
Length = 214
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1FFA|A Chain A, Contribution Of Cutinase Serine 42 Side Chain To The
Stabilization Of The Oxyanion Transition State
Length = 214
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1OXM|A Chain A, Structure Of Cutinase
pdb|1OXM|B Chain B, Structure Of Cutinase
pdb|1CEX|A Chain A, Structure Of Cutinase
Length = 214
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1XZH|A Chain A, Fusarium Solani Cutinase Mutant With Thr 80 Replaced By
Pro
Length = 214
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1CUX|A Chain A, Cutinase, L114y Mutant
Length = 214
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1CUH|A Chain A, Cutinase, R196e Mutant
Length = 214
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|1CUY|A Chain A, Cutinase, L189f Mutant
Length = 214
Score = 27.3 bits (59), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCNTGDLVCTGSLIVAAP 187
>pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna
Length = 763
Score = 26.9 bits (58), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 14/61 (22%)
Query: 132 SAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLS----------DTIKLRCAEDRW 181
+ K D +T G YLLD PL KE +D+L DT+K + D W
Sbjct: 682 TEKSDSVTDSGPTFNYLLD----MPLWYLTKEKKDELCRLRNEKEQELDTLKRKSPSDLW 737
Query: 182 K 182
K
Sbjct: 738 K 738
>pdb|1CUA|A Chain A, Cutinase, N172k Mutant
pdb|3EF3|A Chain A, Cut-1a; Ncn-Pt-Pincer-Cutinase Hybrid
pdb|3ESA|A Chain A, Cut-1b; Ncn-Pt-Pincer-Cutinase Hybrid
pdb|3ESA|B Chain B, Cut-1b; Ncn-Pt-Pincer-Cutinase Hybrid
pdb|3ESB|A Chain A, Cut-1c; Ncn-Pt-Pincer-Cutinase Hybrid
pdb|3ESC|A Chain A, Cut-2a; Ncn-Pt-Pincer-Cutinase Hybrid
pdb|3ESD|A Chain A, Cut-2b; Ncn-Pt-Pincer-Cutinase Hybrid
Length = 214
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCKTGDLVCTGSLIVAAP 187
>pdb|1CUG|A Chain A, Cutinase, R17e, N172k Mutant
Length = 214
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCKTGDLVCTGSLIVAAP 187
>pdb|1CUD|A Chain A, Cutinase, N172k, R196d Mutant, Monoclinic Crystal Form
With Three Molecules Per Asymmetric Unit
pdb|1CUD|B Chain B, Cutinase, N172k, R196d Mutant, Monoclinic Crystal Form
With Three Molecules Per Asymmetric Unit
pdb|1CUD|C Chain C, Cutinase, N172k, R196d Mutant, Monoclinic Crystal Form
With Three Molecules Per Asymmetric Unit
pdb|1CUB|A Chain A, Cutinase, N172k, R196d Mutant, Monoclinic Crystal Form
pdb|1CUC|A Chain A, Cutinase, N172k, R196d Mutant, Orthorhombic Crystal Form
Length = 214
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%)
Query: 30 EELDSLIKATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFP 86
E+LDS I+ IAG FG ++ G +Y + VF L+ T VA P
Sbjct: 131 EDLDSAIRDKIAGTVLFGYTKNLQNRGRIPNYPADRTKVFCKTGDLVCTGSLIVAAP 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,781,708
Number of Sequences: 62578
Number of extensions: 206546
Number of successful extensions: 446
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 56
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)