Query psy71
Match_columns 218
No_of_seqs 221 out of 340
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 18:08:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy71.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/71hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1757|consensus 99.8 8E-20 1.7E-24 142.2 -0.0 51 1-51 69-119 (131)
2 PLN00154 histone H2A; Provisio 99.7 2.2E-19 4.8E-24 144.5 1.2 52 1-52 77-128 (136)
3 KOG2215|consensus 99.7 8.2E-18 1.8E-22 164.2 8.6 166 49-217 380-554 (673)
4 PLN00153 histone H2A; Provisio 99.7 9.2E-19 2E-23 140.1 1.2 52 1-52 62-114 (129)
5 PTZ00252 histone H2A; Provisio 99.7 1.2E-18 2.7E-23 139.7 1.1 52 1-52 63-117 (134)
6 COG5262 HTA1 Histone H2A [Chro 99.7 1.8E-18 3.8E-23 135.6 1.9 51 1-51 64-115 (132)
7 PLN00156 histone H2AX; Provisi 99.7 1.5E-18 3.2E-23 140.2 1.2 51 1-51 67-118 (139)
8 KOG1756|consensus 99.7 1.7E-18 3.6E-23 137.4 1.5 53 1-53 65-118 (131)
9 PTZ00017 histone H2A; Provisio 99.7 2.4E-18 5.2E-23 138.5 1.3 51 1-51 65-116 (134)
10 PLN00157 histone H2A; Provisio 99.7 2.5E-18 5.4E-23 138.1 0.9 52 1-52 64-116 (132)
11 smart00414 H2A Histone 2A. 99.7 1.4E-17 3.1E-22 129.6 1.4 51 1-51 47-98 (106)
12 cd00074 H2A Histone 2A; H2A is 99.6 5.6E-17 1.2E-21 128.0 1.6 52 1-52 58-110 (115)
13 KOG2215|consensus 98.1 1.5E-06 3.2E-11 85.9 3.2 120 61-183 248-372 (673)
14 PF04124 Dor1: Dor1-like famil 97.3 0.0019 4E-08 59.2 10.4 108 56-166 216-334 (338)
15 PF00125 Histone: Core histone 97.0 0.00014 3E-09 52.2 -0.1 29 1-29 47-75 (75)
16 KOG2069|consensus 84.3 7 0.00015 38.8 9.2 97 56-157 240-349 (581)
17 COG5247 BUR6 Class 2 transcrip 81.1 0.62 1.3E-05 36.4 0.6 35 3-37 63-97 (113)
18 PF02861 Clp_N: Clp amino term 79.3 1.2 2.7E-05 28.9 1.6 33 5-37 1-35 (53)
19 PF05649 Peptidase_M13_N: Pept 71.9 72 0.0016 28.3 11.4 122 59-193 256-377 (390)
20 PF00808 CBFD_NFYB_HMF: Histon 65.8 3.5 7.6E-05 28.6 1.3 22 5-26 44-65 (65)
21 PF04305 DUF455: Protein of un 65.6 86 0.0019 28.0 10.3 135 51-187 60-210 (253)
22 PF04604 L_biotic_typeA: Type- 64.7 3.5 7.6E-05 28.3 1.0 25 28-54 16-41 (51)
23 smart00427 H2B Histone H2B. 61.9 4.5 9.8E-05 30.8 1.3 31 5-35 43-75 (89)
24 KOG1659|consensus 59.9 4.3 9.4E-05 35.6 1.0 33 3-35 53-85 (224)
25 PF09905 DUF2132: Uncharacteri 59.9 10 0.00022 27.2 2.7 25 83-107 34-63 (64)
26 COG3643 Glutamate formiminotra 47.9 21 0.00047 32.2 3.4 62 122-184 99-161 (302)
27 cd07674 F-BAR_FCHO1 The F-BAR 47.7 39 0.00084 29.8 5.1 75 74-163 18-96 (261)
28 KOG3521|consensus 47.6 2E+02 0.0043 29.7 10.3 36 66-102 275-310 (846)
29 PF12295 Symplekin_C: Sympleki 47.4 94 0.002 26.2 7.2 94 11-129 47-154 (183)
30 KOG0871|consensus 47.2 8.5 0.00018 32.0 0.8 23 6-28 56-78 (156)
31 PF15630 CENP-S: Kinetochore c 47.1 14 0.00029 27.2 1.7 24 9-32 53-76 (76)
32 PLN00158 histone H2B; Provisio 46.9 11 0.00023 30.1 1.3 31 5-35 69-101 (116)
33 KOG0291|consensus 46.6 46 0.00099 34.5 5.8 131 16-154 722-853 (893)
34 PTZ00463 histone H2B; Provisio 46.0 11 0.00024 30.0 1.3 31 5-35 70-102 (117)
35 COG1548 Predicted transcriptio 44.5 59 0.0013 29.9 5.7 86 31-144 158-249 (330)
36 PRK02308 uvsE putative UV dama 42.7 1.1E+02 0.0023 27.9 7.2 107 100-216 90-214 (303)
37 cd03025 DsbA_FrnE_like DsbA fa 40.0 1.9E+02 0.0042 23.1 8.9 69 89-164 86-158 (193)
38 smart00803 TAF TATA box bindin 39.6 10 0.00023 26.8 0.2 25 3-27 41-65 (65)
39 COG2833 Uncharacterized protei 37.2 1.8E+02 0.004 26.2 7.5 123 59-187 77-218 (268)
40 cd07981 TAF12 TATA Binding Pro 35.0 14 0.0003 26.5 0.2 28 2-29 40-67 (72)
41 COG2761 FrnE Predicted dithiol 33.8 3.1E+02 0.0067 24.2 8.4 125 69-204 76-217 (225)
42 PF02269 TFIID-18kDa: Transcri 33.0 12 0.00026 28.3 -0.4 27 5-31 43-69 (93)
43 PF02284 COX5A: Cytochrome c o 32.6 1E+02 0.0022 24.3 4.7 41 167-212 66-106 (108)
44 PF13309 HTH_22: HTH domain 31.3 58 0.0013 22.7 2.9 26 179-204 13-38 (64)
45 KOG1744|consensus 29.8 31 0.00067 27.9 1.4 25 4-28 78-102 (127)
46 cd03024 DsbA_FrnE DsbA family, 29.7 3E+02 0.0065 22.2 7.9 88 72-167 72-167 (201)
47 COG2924 Uncharacterized protei 29.5 1.1E+02 0.0025 23.1 4.3 67 134-203 6-74 (90)
48 COG2036 HHT1 Histones H3 and H 28.8 22 0.00047 27.1 0.4 26 3-28 58-83 (91)
49 PF13727 CoA_binding_3: CoA-bi 28.0 50 0.0011 25.7 2.4 44 162-205 127-170 (175)
50 PF02969 TAF: TATA box binding 27.9 21 0.00045 25.5 0.1 25 3-27 42-66 (66)
51 cd07978 TAF13 The TATA Binding 27.1 39 0.00085 25.5 1.5 24 7-31 46-69 (92)
52 PF14613 DUF4449: Protein of u 26.8 63 0.0014 27.1 2.8 23 145-167 23-45 (164)
53 PF06798 PrkA: PrkA serine pro 25.4 3.3E+02 0.0071 24.2 7.3 134 61-205 89-244 (254)
54 PF03851 UvdE: UV-endonuclease 25.3 3E+02 0.0065 24.9 7.1 79 99-178 85-183 (275)
55 PF09453 HIRA_B: HIRA B motif; 25.0 27 0.00058 20.4 0.2 12 11-22 8-19 (24)
56 PF08369 PCP_red: Proto-chloro 24.7 49 0.0011 21.7 1.4 19 7-25 26-44 (45)
57 PRK10378 inactive ferrous ion 24.7 1.4E+02 0.003 28.4 4.9 55 149-203 301-362 (375)
58 PF04190 DUF410: Protein of un 24.0 1.4E+02 0.003 26.3 4.7 69 123-201 5-78 (260)
59 COG4628 Uncharacterized conser 23.8 73 0.0016 25.6 2.5 30 83-112 43-78 (136)
60 TIGR00629 uvde UV damage endon 23.5 4.6E+02 0.01 24.2 8.0 58 119-177 123-191 (312)
61 cd03465 URO-D_like The URO-D _ 23.5 82 0.0018 27.9 3.1 80 121-205 160-245 (330)
62 cd07377 WHTH_GntR Winged helix 23.4 2.1E+02 0.0047 18.4 4.9 17 188-204 38-54 (66)
63 COG5150 Class 2 transcription 23.3 33 0.00072 27.9 0.5 24 5-28 54-77 (148)
64 PF04625 DEC-1_N: DEC-1 protei 23.2 1.7E+02 0.0038 27.5 5.2 72 100-174 274-355 (407)
65 cd07673 F-BAR_FCHO2 The F-BAR 23.1 1.7E+02 0.0037 26.1 5.0 75 74-163 25-103 (269)
66 COG4294 Uve UV damage repair e 22.9 2.3E+02 0.005 26.5 5.8 134 62-199 61-229 (347)
67 cd08050 TAF6 TATA Binding Prot 22.3 33 0.00072 31.7 0.4 27 2-28 37-63 (343)
68 cd00465 URO-D_CIMS_like The UR 22.1 1.2E+02 0.0027 26.5 3.9 80 121-205 136-223 (306)
69 PF05997 Nop52: Nucleolar prot 22.0 2.8E+02 0.0061 23.9 6.1 76 97-173 125-210 (217)
70 TIGR02639 ClpA ATP-dependent C 21.9 49 0.0011 33.6 1.5 37 1-37 8-44 (731)
71 cd07648 F-BAR_FCHO The F-BAR ( 21.2 2E+02 0.0042 25.1 5.0 76 72-162 16-95 (261)
72 PF14512 TM1586_NiRdase: Putat 20.8 58 0.0013 28.3 1.6 19 192-218 72-90 (206)
73 cd01490 Ube1_repeat2 Ubiquitin 20.7 1.2E+02 0.0025 29.3 3.7 45 83-135 166-210 (435)
74 PF00540 Gag_p17: gag gene pro 20.4 54 0.0012 26.9 1.2 44 90-142 27-70 (140)
No 1
>KOG1757|consensus
Probab=99.76 E-value=8e-20 Score=142.23 Aligned_cols=51 Identities=82% Similarity=1.079 Sum_probs=49.3
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHHHHhcCCcccCCCCc
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPE 51 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~~tia~~gv~~~~r~ 51 (218)
|||||||+++|.|.+||||||+|||||.||||+.|++.|||+|||||++++
T Consensus 69 VLeLAgNasKdLKvKRitprHlqLAiRGDeELDtLIk~TiagGgViPhihk 119 (131)
T KOG1757|consen 69 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKATIAGGGVIPHIHK 119 (131)
T ss_pred HHHHcccccccceeeeccchhheeeecCcHHHHHHHHHhhccCccccchHH
Confidence 689999999999999999999999999999999999999999999999765
No 2
>PLN00154 histone H2A; Provisional
Probab=99.75 E-value=2.2e-19 Score=144.47 Aligned_cols=52 Identities=79% Similarity=1.039 Sum_probs=49.6
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHHHHhcCCcccCCCCcc
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEV 52 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~~tia~~gv~~~~r~l 52 (218)
|||||||+|+|++++||||||+++||+||+||++||++|||+|||+|+++.+
T Consensus 77 VLELAGNaA~d~kk~RItPrHi~lAIrnDeEL~~Ll~~TIa~GGVlP~i~~~ 128 (136)
T PLN00154 77 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKGTIAGGGVIPHIHKS 128 (136)
T ss_pred HHHHHHHHHHhhCCceecHHHhhhhccCcHHHHHHhcCCccCCccCCCcchh
Confidence 6999999999999999999999999999999999999999999999997653
No 3
>KOG2215|consensus
Probab=99.72 E-value=8.2e-18 Score=164.21 Aligned_cols=166 Identities=18% Similarity=0.248 Sum_probs=147.0
Q ss_pred CCcccccCcchhhHHHHHHH---HHHHHHHHHHHHHHhhCCCCcchhhHhHHHHHHHHHHHHHHHHHhhccCCCCcccHH
Q psy71 49 YPEVRRDGPALSYVTSASTV---FFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLS 125 (218)
Q Consensus 49 ~r~l~~eG~~~~Yi~~Ls~v---~Ft~I~~t~~ef~~~~F~~~~~~~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~a 125 (218)
+|.... ++...|++..|.+ +++.+.+.+.++. . |...|.|....++|+..+++.|...+.|+.-...++.++++
T Consensus 380 ~~s~~~-~a~~~~~~~~~~r~~~~~~d~~~~l~~~~-~-~e~~s~~~~~~~q~~~~~ldtl~~~l~~s~~e~~~~~s~~a 456 (673)
T KOG2215|consen 380 KHSESL-SAYRCRDTDEASRFLQVVQDFSEDLCDIL-K-FEQGSKCLYTSFQVLNKELDTLGRQLPRSYEEQGPARSMVA 456 (673)
T ss_pred HHHHHH-HHHHhhhhhhhHHHHHHHHHHHHHHHHHh-h-hccchHHHHHHHHHHHHHHHHHHHHcccchhhcCchHHHHH
Confidence 334444 5555555555544 4666777777787 6 88888899999999999999999999999988888899999
Q ss_pred HHHHHHHHHHhhhhhccCCcHHHHhhhccccHHHH--HHHHHHHHHHHHhhhhh-cCCcccCCCCCHHHHHHHHHHHhhc
Q psy71 126 PCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKT--LKETRDKLSDTIKLRCA-EDRWKPYNLNNRQQRDKFLTEFTDA 202 (218)
Q Consensus 126 eCi~i~~~hc~~L~evGLDl~flL~~lLr~~ie~a--l~~~~~~i~e~v~~r~~-ed~W~~~nl~~~~~~~k~~~e~~~l 202 (218)
+|++.+..||.+|...|+|+++.++.++|..++.+ ++.+++-|+|++++|.+ +|+|+|++++|+++++++.+||+++
T Consensus 457 ~iv~~a~~~~~qL~~ig~~lt~~~~~Llr~~le~s~~l~~~~E~~~~ald~r~~~ee~W~~~~L~t~s~Lk~l~ee~~~~ 536 (673)
T KOG2215|consen 457 EIVKRAEHTSEQLTLIGLDLTIRDEALLRSKLESSQLLEGFKEGIADALDNRNREEESWVRYLLQTESALKDLSEELSDL 536 (673)
T ss_pred HHHHHhhhhHHHHHHHHhhHHHHHHhhhhhhHHHhhhhhcchhhHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999 99999999999999999 8999999999999999999999999
Q ss_pred Ccccccc---cccCCccc
Q psy71 203 GLTSMSS---YLTGKFHV 217 (218)
Q Consensus 203 Gl~~~~~---y~~~~~~~ 217 (218)
|+.-.++ |..||||+
T Consensus 537 gv~~~~~~~~~~e~d~~~ 554 (673)
T KOG2215|consen 537 GVIYLRQISHELEGDGWL 554 (673)
T ss_pred hhhhHhhhhcccccceEE
Confidence 9977776 89999997
No 4
>PLN00153 histone H2A; Provisional
Probab=99.72 E-value=9.2e-19 Score=140.06 Aligned_cols=52 Identities=58% Similarity=0.777 Sum_probs=49.2
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV 52 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l 52 (218)
|||||||+|+|++++||||||+++||+||+||++||+ +||++|||+|+++..
T Consensus 62 VLELAgnaa~d~kk~RItPrHi~lAI~nDeEL~~Ll~~vTIa~GGV~P~i~~~ 114 (129)
T PLN00153 62 VLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAV 114 (129)
T ss_pred HHHHHHHHHHhcCCCccChHHHHhhccCcHHHHHHHCCCccCCCccCCCcchh
Confidence 6899999999999999999999999999999999998 899999999997643
No 5
>PTZ00252 histone H2A; Provisional
Probab=99.71 E-value=1.2e-18 Score=139.72 Aligned_cols=52 Identities=38% Similarity=0.580 Sum_probs=48.3
Q ss_pred Cccccchhhhh--cCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71 1 VLELAGNASKD--LKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV 52 (218)
Q Consensus 1 vLelag~~a~~--~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l 52 (218)
|||||||+|++ +|++||||||+++||+||+||++||+ +|||+|||+|+++.+
T Consensus 63 VLELAgnaa~d~~~kk~RItPrHi~lAIrNDeEL~~Ll~~vTIa~GGVlP~i~~~ 117 (134)
T PTZ00252 63 LLELSVKAAAQQAKKPKRLTPRTVTLAVRHDDDLGSLLKNVTLSRGGVMPSLNKA 117 (134)
T ss_pred HHHHHHHHHHhccCCcccccHHHHHhhccChHHHHHHHcCCccCCCccCCCccHh
Confidence 68999999976 89999999999999999999999998 799999999997653
No 6
>COG5262 HTA1 Histone H2A [Chromatin structure and dynamics]
Probab=99.71 E-value=1.8e-18 Score=135.64 Aligned_cols=51 Identities=59% Similarity=0.791 Sum_probs=48.6
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCc
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPE 51 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~ 51 (218)
|||||||+|+|+|++||+|||+|+||+||+||+.|+. +||++|||+|+|.+
T Consensus 64 ilelAgNaA~d~kkkri~PrHlqlAIrnD~EL~~l~~~~tIa~GGvlp~I~~ 115 (132)
T COG5262 64 ILELAGNAARDNKKKRIIPRHLQLAIRNDEELNKLLGDVTIAQGGVLPNINP 115 (132)
T ss_pred HHHHhhhhhhhcCcceechHHHHHHhcCcHHHHHHhhhheeecCCcccccCh
Confidence 6899999999999999999999999999999999998 89999999998654
No 7
>PLN00156 histone H2AX; Provisional
Probab=99.71 E-value=1.5e-18 Score=140.25 Aligned_cols=51 Identities=55% Similarity=0.779 Sum_probs=48.8
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCc
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPE 51 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~ 51 (218)
|||||||+|+|++++||||||+++||+||+||++||+ +||++|||+|+++.
T Consensus 67 VLELAgNaa~d~kk~RItPrHi~lAIrnDeEL~~Ll~~vTIa~GGV~P~i~~ 118 (139)
T PLN00156 67 VLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGSVTIAAGGVLPNIHQ 118 (139)
T ss_pred HHHHHHHHHHHcCCCcCcHHHHHhhccCcHHHHHHHCCCccCCCccCCCccH
Confidence 6899999999999999999999999999999999998 79999999999764
No 8
>KOG1756|consensus
Probab=99.71 E-value=1.7e-18 Score=137.41 Aligned_cols=53 Identities=57% Similarity=0.774 Sum_probs=49.9
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCccc
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEVR 53 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l~ 53 (218)
|||+|||+|+|++|.||||||+++||+||+||++|++ +||++|||+|++..+.
T Consensus 65 ile~agnaardnkk~ri~PrH~~lAI~NDeEL~~lL~~vtIa~GGvlPnI~~~l 118 (131)
T KOG1756|consen 65 ILELAGNAARDNKKTRITPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAIL 118 (131)
T ss_pred HHHHhHHHhhhcCccccChHHHHHHHhCcHHHHHHhccceeccCCcccccchhh
Confidence 6899999999999999999999999999999999997 8999999999977643
No 9
>PTZ00017 histone H2A; Provisional
Probab=99.70 E-value=2.4e-18 Score=138.52 Aligned_cols=51 Identities=63% Similarity=0.832 Sum_probs=48.7
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCc
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPE 51 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~ 51 (218)
|||||||+|+|++++||||||+++||+||+||++||+ +|||+|||+|+++.
T Consensus 65 ILELAgNaa~d~kk~RItPrHi~lAI~nDeEL~~Ll~~vtIa~GGV~P~i~~ 116 (134)
T PTZ00017 65 VLELAGNAAKDNKKKRITPRHIQLAIRNDEELNKLLAGVTIASGGVLPNIHK 116 (134)
T ss_pred HHHHHHHHHHhcCCCeecHHHHHhhccCcHHHHHHHcCCcccCCccCCCccH
Confidence 6899999999999999999999999999999999996 89999999999764
No 10
>PLN00157 histone H2A; Provisional
Probab=99.70 E-value=2.5e-18 Score=138.06 Aligned_cols=52 Identities=56% Similarity=0.772 Sum_probs=49.1
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV 52 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l 52 (218)
|||||||+|++++++||||||+++||+||+||++||+ +|||+|||+|+++.+
T Consensus 64 VLELAgnaa~d~kk~RItPrHi~lAI~nDeEL~~Ll~~vtIa~GGV~P~i~~~ 116 (132)
T PLN00157 64 VLELAGNAARDNKKSRIVPRHIQLAVRNDEELSKLLGGVTIAAGGVLPNIHSV 116 (132)
T ss_pred HHHHHHHHHHhcCCccccHHHHhhcccCcHHHHHHHcCceecCCccCCCcchh
Confidence 6899999999999999999999999999999999998 799999999997543
No 11
>smart00414 H2A Histone 2A.
Probab=99.66 E-value=1.4e-17 Score=129.64 Aligned_cols=51 Identities=63% Similarity=0.847 Sum_probs=48.5
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCc
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPE 51 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~ 51 (218)
|||||||+|++++++||||||+++||+||+||++||+ +||++|||+|+++.
T Consensus 47 ILeLagn~a~~~k~~rItp~hi~lAi~nD~EL~~L~~~vti~~ggv~p~i~~ 98 (106)
T smart00414 47 VLELAGNAARDNKKRRITPRHLQLAIRNDEELNKLLKGVTIAQGGVLPNIHK 98 (106)
T ss_pred HHHHHHHHHHhcCCCccchHHHhhhccCCHHHHHHHcCcccCCCccCCCcch
Confidence 6899999999999999999999999999999999998 79999999998754
No 12
>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.
Probab=99.63 E-value=5.6e-17 Score=127.97 Aligned_cols=52 Identities=63% Similarity=0.859 Sum_probs=49.2
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV 52 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l 52 (218)
|||||||+|++++++|||||||++||+||+||++||+ +||++|||+|+++..
T Consensus 58 IlelA~n~ak~~k~krItp~hi~lAi~nD~EL~~L~~~vtI~~ggv~p~i~~~ 110 (115)
T cd00074 58 VLELAGNAARDNKKKRITPRHLQLAVRNDEELNKLLKGVTIASGGVLPNIHKV 110 (115)
T ss_pred HHHHHHHHHHHcCCCeEcHHHHHHHHhccHHHHHHHcCCcccCCccCCCcchh
Confidence 6899999999999999999999999999999999998 799999999997653
No 13
>KOG2215|consensus
Probab=98.12 E-value=1.5e-06 Score=85.94 Aligned_cols=120 Identities=20% Similarity=0.258 Sum_probs=109.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCC--cchhhHhHHHHHHHHHHHHHHHHHhhccCC---CCcccHHHHHHHHHHHH
Q psy71 61 YVTSASTVFFTNLSLMITELQKVAFPST--GECAAAFVVWATREFNLFVSHVIRELFVTQ---SSLSTLSPCIAAVSAKC 135 (218)
Q Consensus 61 Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~~--~~~~S~~V~Wa~~eve~F~~l~~rqv~~~~---~~l~~~aeCi~i~~~hc 135 (218)
|-..++.+.|.+++-+..+-. ..|++. |+|...-+.|+.++++.|-.++..+.|... ..++..+.|++.+..+|
T Consensus 248 ~qa~~~~~~~~~~S~A~~e~~-~~~~~e~~~s~~~~~~~W~~~~~e~~~~~v~~~~~~~s~~~~~l~~~~~~~~~~~~~~ 326 (673)
T KOG2215|consen 248 RQATFPKLRFSAISWALTESL-ISFGEENLPSYSDEEVLWLEELVELFKLLVAHNAFKTSLEAIHLRAASACLQLALTIC 326 (673)
T ss_pred cccccchHHHhcCCcccCccc-ccccCCCCcccchhhhchhhhhhHHHHHHHHhccchhhHHHHHhhhcccchhhhhhhh
Confidence 334556899999999999999 999998 899999999999999999999999997774 66777888999999999
Q ss_pred hhhhhccCCcHHHHhhhccccHHHHHHHHHHHHHHHHhhhhhcCCccc
Q psy71 136 DQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKP 183 (218)
Q Consensus 136 ~~L~evGLDl~flL~~lLr~~ie~al~~~~~~i~e~v~~r~~ed~W~~ 183 (218)
..|+.+||-+...+-..++ .+++++.++++........+.-++|.-
T Consensus 327 ~~Lq~~~lfl~~~ll~~~~--~~~~le~~~r~~~~~~~~l~el~~~~~ 372 (673)
T KOG2215|consen 327 KPLQMRELFLLNLLLKIFS--VERALERDFRVAQRRHHQLVELGRWSR 372 (673)
T ss_pred hhhhHhHhhhhhHHHHHhh--hhhhhhhhHHHHhhhHHHHHHhhhhcc
Confidence 9999999999999999999 999999999999999999999999984
No 14
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=97.34 E-value=0.0019 Score=59.23 Aligned_cols=108 Identities=15% Similarity=0.243 Sum_probs=81.2
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhhCCCC-cc----------hhhHhHHHHHHHHHHHHHHHHHhhccCCCCcccH
Q psy71 56 GPALSYVTSASTVFFTNLSLMITELQKVAFPST-GE----------CAAAFVVWATREFNLFVSHVIRELFVTQSSLSTL 124 (218)
Q Consensus 56 G~~~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~~-~~----------~~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~ 124 (218)
.++..|+..+..+|=..+-+++..|. ++||++ +. -.+.+..|+.+.+..|...+++++.... ....
T Consensus 216 ~~~~~~lkr~iei~R~~~fdiitqY~-aIF~~e~~~~~~~~~~~~~~~~~l~sw~~~~v~~~l~~L~~~L~~~~--~~~~ 292 (338)
T PF04124_consen 216 SDPYRYLKRYIEIYREHLFDIITQYR-AIFPDESSTSVSLQDRPKFIPSELFSWALHRVSSFLETLEMYLPRVD--ESSR 292 (338)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCccccccccccccccChhHHHHHHHHHHHHHHHHHHHHhhccc--cchH
Confidence 45789999999999999999999999 999932 11 2367889999999999999999987762 1222
Q ss_pred HHHHHHHHHHHhhhhhccCCcHHHHhhhccccHHHHHHHHHH
Q psy71 125 SPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRD 166 (218)
Q Consensus 125 aeCi~i~~~hc~~L~evGLDl~flL~~lLr~~ie~al~~~~~ 166 (218)
+..+.-+.--|..|.-+|.||+.++...|...+.+....+..
T Consensus 293 ~sll~q~~y~~~S~~r~g~DF~~ll~~~~~~~~~~~f~~~~~ 334 (338)
T PF04124_consen 293 ESLLTQLMYFASSFGRVGADFRPLLAPLFERAVLNLFETSVS 334 (338)
T ss_pred HHHHHHHHHHHHhcCccCCChHHHhHHHHHHHHHHHHHHHHH
Confidence 223333333445689999999999998887777666555443
No 15
>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]. Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....
Probab=97.05 E-value=0.00014 Score=52.19 Aligned_cols=29 Identities=55% Similarity=0.756 Sum_probs=27.1
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCC
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGD 29 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd 29 (218)
|+|+|++.|..+|+++|+|+|+++|+++|
T Consensus 47 il~~A~~~a~~~kR~tI~~~DI~~A~r~~ 75 (75)
T PF00125_consen 47 ILEEAGNLARHAKRKTITPRDIQLAVRID 75 (75)
T ss_dssp HHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred hhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence 47899999999999999999999999976
No 16
>KOG2069|consensus
Probab=84.26 E-value=7 Score=38.79 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=69.5
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHhhCCCC-----cch-------hhHhHHHHHHHHHHHHHHHHHhhccCCCCc-c
Q psy71 56 GPALSYVTSASTVFFTNLSLMITELQKVAFPST-----GEC-------AAAFVVWATREFNLFVSHVIRELFVTQSSL-S 122 (218)
Q Consensus 56 G~~~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~~-----~~~-------~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l-~ 122 (218)
.++..|+.+...++=..+-++...|+ ++||++ +++ .|.|..|....+..|..++.+-+.-.-..+ .
T Consensus 240 ~~~~~~l~~~i~~~r~~lf~~i~qY~-aifpe~~~~~n~~~~~~~~~~~~~~~~w~~~~~ss~l~~i~~~~~~~~~~l~~ 318 (581)
T KOG2069|consen 240 NNPYLYLKKTIEIIRVNLFDIITQYL-AVFPEDEGDLNPNGDVRYKNITDLLISWVLSKISSFLQLIEMMLKKGIESLEH 318 (581)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcccCCCCcccCCCccCchhhhhhhHHHhhccHHHHHHHHHHhhhchHHH
Confidence 45678999999999999999999999 999983 222 246779999999999999997765442222 2
Q ss_pred cHHHHHHHHHHHHhhhhhccCCcHHHHhhhccccH
Q psy71 123 TLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPL 157 (218)
Q Consensus 123 ~~aeCi~i~~~hc~~L~evGLDl~flL~~lLr~~i 157 (218)
++-.||--+ ..+.-+|+||+-++-..|...+
T Consensus 319 vl~~cmyf~----~SF~rvg~Dfr~~lap~f~~~v 349 (581)
T KOG2069|consen 319 VLGQLMYFA----LSFGRVGLDFRGLLAPLLECVV 349 (581)
T ss_pred HHHHHHHHH----HhhccccchhcccccHHHHHHH
Confidence 344444322 2367799999987766554433
No 17
>COG5247 BUR6 Class 2 transcription repressor NC2, alpha subunit (DRAP1 homolog) [Transcription]
Probab=81.11 E-value=0.62 Score=36.37 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=30.3
Q ss_pred cccchhhhhcCCcccchhhhHHHhhCChhHhHHHH
Q psy71 3 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 37 (218)
Q Consensus 3 elag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~ 37 (218)
.++++.||..+.+|||-+|+..|+.+||..+=|=.
T Consensus 63 ~~s~k~aR~~~skR~t~e~lk~a~~sdekFdFL~~ 97 (113)
T COG5247 63 GLSLKEARKKSSKRMTSEFLKRATESDEKFDFLKN 97 (113)
T ss_pred HHHHHHHHhccchhhHHHHHHHHHhhhHHHHHHHH
Confidence 35688999999999999999999999999875543
No 18
>PF02861 Clp_N: Clp amino terminal domain; InterPro: IPR004176 This short domain is found in one or two copies at the amino terminus of ClpA and ClpB proteins from bacteria and eukaryotes. The function of these domains is uncertain but they may form a protein binding site []. The proteins are thought to be subunits of ATP-dependent proteases which act as chaperones to target the proteases to substrates.; GO: 0019538 protein metabolic process; PDB: 3FH2_A 3ZRJ_A 3ZRI_A 1QVR_C 3FES_C 2Y1R_F 3PXG_D 2Y1Q_A 3PXI_C 2K77_A ....
Probab=79.32 E-value=1.2 Score=28.88 Aligned_cols=33 Identities=27% Similarity=0.392 Sum_probs=25.2
Q ss_pred cchhhhhcCCcccchhhhHHHhhCCh--hHhHHHH
Q psy71 5 AGNASKDLKVKRITPRHLQLAIRGDE--ELDSLIK 37 (218)
Q Consensus 5 ag~~a~~~~~~rItPrhl~lAi~nd~--eL~~Ll~ 37 (218)
|-+.|+..+-..|+|.|+.+|+-.++ ....+|+
T Consensus 1 A~~~A~~~~~~~i~~eHlL~all~~~~~~~~~il~ 35 (53)
T PF02861_consen 1 AQELARERGHQYISPEHLLLALLEDPDSIAARILK 35 (53)
T ss_dssp HHHHHHHTTBSSE-HHHHHHHHHHHTTSHHHHHHH
T ss_pred CHHHHHHcCCCcccHHHHHHHHHhhhhHHHHHHHH
Confidence 34678889999999999999977755 5666665
No 19
>PF05649 Peptidase_M13_N: Peptidase family M13 This is family M13 in the peptidase classification. ; InterPro: IPR008753 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M13 (neprilysin family, clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA and the predicted active site residues for members of this family and thermolysin occur in the motif HEXXH []. M13 peptidases are well-studied proteases found in a wide range of organisms including mammals and bacteria. In mammals they participate in processes such as cardiovascular development, blood-pressure regulation, nervous control of respiration, and regulation of the function of neuropeptides in the central nervous system. In bacteria they may be used for digestion of milk [, ]. The family includes eukaryotic and prokaryotic oligopeptidases, as well as some of the proteins responsible for the molecular basis of the blood group antigens e.g. Kell []. Neprilysin (3.4.24.11 from EC), is another member of this group, it is variously known as common acute lymphoblastic leukemia antigen (CALLA), enkephalinase (gp100) and neutral endopeptidase metalloendopeptidase (NEP). It is a plasma membrane-bound mammalian enzyme that is able to digest biologically-active peptides, including enkephalins []. The zinc ligands of neprilysin are known and are analogous to those in thermolysin, a related peptidase [, ]. Neprilysins, like thermolysin, are inhibited by phosphoramidon, which appears to selectively inhibit this family in mammals. The enzymes are all oligopeptidases, digesting oligo- and polypeptides, but not proteins []. Neprilysin consists of a short cytoplasmic domain, a membrane-spanning region and a large extracellular domain. The cytoplasmic domain contains a conformationally-restrained octapeptide, which is thought to act as a stop transfer sequence that prevents proteolysis and secretion [, ].; GO: 0008237 metallopeptidase activity, 0006508 proteolysis; PDB: 3DWB_A 3ZUK_A 2QPJ_A 1R1I_A 1R1J_A 1Y8J_A 1R1H_A 1DMT_A 2YB9_A.
Probab=71.90 E-value=72 Score=28.30 Aligned_cols=122 Identities=11% Similarity=0.160 Sum_probs=70.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhhHhHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHhhh
Q psy71 59 LSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQL 138 (218)
Q Consensus 59 ~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~~~~~~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~aeCi~i~~~hc~~L 138 (218)
+.|..+|..++=+.=.++...|. . |. ....+..=...++......+.+++.+......-+..|++.+..--...
T Consensus 256 ~~y~~~l~~ll~~~~~~~l~nYl-~-~~----~i~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~C~~~~~~~l~~~ 329 (390)
T PF05649_consen 256 PDYFKKLSELLKQTSKETLANYL-G-WR----LIRELSPYLSSELRDLYFEFYRTLSGVEESRPRWQRCVRHVEKLLPFA 329 (390)
T ss_dssp HHHHHHHHHHHHHS-HHHHHHHH-H-HH----HHHHHGGGS-HHHHHHHHHHHTHHH--SS---HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCCcHHHHHHH-H-HH----HHHHHHhhccHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHHHHHH
Confidence 34888887766554455666665 1 11 122333334455555555555566666656668888998887543322
Q ss_pred hhccCCcHHHHhhhccccHHHHHHHHHHHHHHHHhhhhhcCCcccCCCCCHHHHH
Q psy71 139 TSLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRD 193 (218)
Q Consensus 139 ~evGLDl~flL~~lLr~~ie~al~~~~~~i~e~v~~r~~ed~W~~~nl~~~~~~~ 193 (218)
-. ...+...+.+.-++.+++-.+.|.++...++.+=+| |+..|++..-
T Consensus 330 ~~-----~~y~~~~~~~~~~~~v~~~~~~ik~~f~~~i~~~~W--ld~~tk~~a~ 377 (390)
T PF05649_consen 330 LG-----RLYVRRYFDKENKKEVEDMVENIKEAFRERIEESDW--LDEETKKEAI 377 (390)
T ss_dssp HH-----HHHHHHH--CCHHHHHHHHHHHHHHHHHHHHCT-TT--S-HHHHHHHH
T ss_pred HH-----hhHhhhcCchhHHHHHHHHHHHHHHHHHHHHhhCCC--CCHHHHHHHH
Confidence 21 255667788888899999999999999999999999 5555554433
No 20
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=65.84 E-value=3.5 Score=28.55 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=17.5
Q ss_pred cchhhhhcCCcccchhhhHHHh
Q psy71 5 AGNASKDLKVKRITPRHLQLAI 26 (218)
Q Consensus 5 ag~~a~~~~~~rItPrhl~lAi 26 (218)
|...|...+++.|+|+||..|+
T Consensus 44 A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 44 ANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp HHHHHHHTTSSEE-HHHHHHHH
T ss_pred HHHHHHHcCCCccCHHHHHHHC
Confidence 4566778999999999999885
No 21
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=65.61 E-value=86 Score=28.00 Aligned_cols=135 Identities=16% Similarity=0.172 Sum_probs=89.3
Q ss_pred cccccCcchhhHHHHHHHHHHHHHHHHHHHHHhhC-CCC-cchhhHhHHHHHHHHHHHHHHHHHhh-ccCC-CCccc---
Q psy71 51 EVRRDGPALSYVTSASTVFFTNLSLMITELQKVAF-PST-GECAAAFVVWATREFNLFVSHVIREL-FVTQ-SSLST--- 123 (218)
Q Consensus 51 ~l~~eG~~~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F-~~~-~~~~S~~V~Wa~~eve~F~~l~~rqv-~~~~-~~l~~--- 123 (218)
+..-...-..-+..++.+=|++|.-+..-.. -| ++- ..++..++..|.+|...|.-+..|=- ++.. +++.+
T Consensus 60 ~~~~~~~r~~llHaiAhIE~~AIdLa~Da~~--RF~~~lP~~f~~D~~~va~dEarHf~ll~~rL~~lG~~yGd~P~h~g 137 (253)
T PF04305_consen 60 KLGTPEGRAALLHAIAHIELNAIDLALDAIY--RFHPNLPREFYDDWLRVADDEARHFRLLRERLEELGSDYGDLPAHDG 137 (253)
T ss_pred CCCChhhHHHHHHHhcchHHHHHHHHHHHHH--HHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhH
Confidence 3333344467788999999999987665554 45 443 35779999999999999887776632 2222 22222
Q ss_pred -HHHHHHHH------HHHHh-hhhhccCCcHHHHhhhccccHHHHHHHHHHHH-HHHHhhhhhcCCcccCCCC
Q psy71 124 -LSPCIAAV------SAKCD-QLTSLGLDLRYLLDGALRSPLTKTLKETRDKL-SDTIKLRCAEDRWKPYNLN 187 (218)
Q Consensus 124 -~aeCi~i~------~~hc~-~L~evGLDl~flL~~lLr~~ie~al~~~~~~i-~e~v~~r~~ed~W~~~nl~ 187 (218)
|..|.+.+ +.-.- .|+..|||.+..+..-|+..=....-+-.+.| .|-|.|-+...+|-.+-.+
T Consensus 138 Lw~~~~~t~~dl~~R~A~vp~~~EArGLD~~p~~~~k~~~~gD~~sa~iL~~I~~DEi~HV~~G~rWf~~~c~ 210 (253)
T PF04305_consen 138 LWEAAEQTAHDLLARMALVPRVLEARGLDVTPFIIEKFRSAGDEESAAILEIILRDEIGHVAIGNRWFRYLCE 210 (253)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhhCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333332 11222 37889999999998888765555555555666 7889998889999877664
No 22
>PF04604 L_biotic_typeA: Type-A lantibiotic; InterPro: IPR007682 Lantibiotics are antibiotic peptides distinguished by the presence of the rare thioether amino acids lanthionine and/or methyllanthionine. They are produced by Gram-positive bacteria as gene-encoded precursor peptides and undergo post-translational modification to generate the mature peptide. Based on their structural and functional features lantibiotics are currently divided into two major groups: the flexible amphiphilic type-A and the rather rigid and globular type-B. Type-A lantibiotics act primarily by pore formation in the bacterial membrane by a mechanism involving the interaction with specific docking molecules such as the membrane precursor lipid II [].; GO: 0019748 secondary metabolic process, 0005576 extracellular region
Probab=64.73 E-value=3.5 Score=28.27 Aligned_cols=25 Identities=32% Similarity=0.461 Sum_probs=20.8
Q ss_pred CChhHhHHHHHHhcCCcccCC-CCcccc
Q psy71 28 GDEELDSLIKATIAGGARFGL-YPEVRR 54 (218)
Q Consensus 28 nd~eL~~Ll~~tia~~gv~~~-~r~l~~ 54 (218)
.|+||++++++. ++||++. ++.|+.
T Consensus 16 s~eELd~ilGg~--g~Gv~~Tis~eC~~ 41 (51)
T PF04604_consen 16 SDEELDQILGGA--GNGVIKTISHECRM 41 (51)
T ss_pred CHHHHHHHhCCC--CCCceeeccccccc
Confidence 499999999832 8999988 888877
No 23
>smart00427 H2B Histone H2B.
Probab=61.86 E-value=4.5 Score=30.76 Aligned_cols=31 Identities=26% Similarity=0.277 Sum_probs=23.5
Q ss_pred cchhhhhcCCcccchhhhHHHhhC--ChhHhHH
Q psy71 5 AGNASKDLKVKRITPRHLQLAIRG--DEELDSL 35 (218)
Q Consensus 5 ag~~a~~~~~~rItPrhl~lAi~n--d~eL~~L 35 (218)
|+.-++.+||..||+|.||-|++- ..||.+.
T Consensus 43 As~L~~~nkr~TltsreIqtAvrl~LpgeLakh 75 (89)
T smart00427 43 ASKLARYNKKSTLSSREIQTAVRLILPGELAKH 75 (89)
T ss_pred HHHHHhccCCCcCCHHHHHHHHHHHccHHHHHH
Confidence 445667799999999999999986 4455443
No 24
>KOG1659|consensus
Probab=59.89 E-value=4.3 Score=35.56 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=28.2
Q ss_pred cccchhhhhcCCcccchhhhHHHhhCChhHhHH
Q psy71 3 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSL 35 (218)
Q Consensus 3 elag~~a~~~~~~rItPrhl~lAi~nd~eL~~L 35 (218)
-.++++++..+.+|+||.|+..||.+|+.++=|
T Consensus 53 ~~t~~~t~~~~aKt~s~~hlkq~v~~~~~FdFL 85 (224)
T KOG1659|consen 53 QKTLEITRSRGAKTVSSSHLKQAVESDPKFDFL 85 (224)
T ss_pred HHHHHHHHhcCccccCHHHHHHHHhccchhHHH
Confidence 346788899999999999999999999986544
No 25
>PF09905 DUF2132: Uncharacterized conserved protein (DUF2132); InterPro: IPR018668 This entry contains proteins that have no known function. ; PDB: 2JVW_A.
Probab=59.88 E-value=10 Score=27.20 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=19.8
Q ss_pred hhCCCCcchhhHhH-----HHHHHHHHHHH
Q psy71 83 VAFPSTGECAAAFV-----VWATREFNLFV 107 (218)
Q Consensus 83 ~~F~~~~~~~S~~V-----~Wa~~eve~F~ 107 (218)
.||..+|+.-|++- -||++.||.|-
T Consensus 34 ~CF~~~PsikSSLkFLRkTpWAR~KVE~lY 63 (64)
T PF09905_consen 34 NCFKNNPSIKSSLKFLRKTPWAREKVENLY 63 (64)
T ss_dssp SSTTSS--HHHHHHHHHHSHHHHHHHHHHH
T ss_pred ccCCCCCchHHHHHHHhcCHhHHHHHHHhc
Confidence 69999999998865 79999999873
No 26
>COG3643 Glutamate formiminotransferase [Amino acid transport and metabolism]
Probab=47.88 E-value=21 Score=32.21 Aligned_cols=62 Identities=21% Similarity=0.395 Sum_probs=48.7
Q ss_pred ccHHHHHHHHHHHHhhhhh-ccCCcHHHHhhhccccHHHHHHHHHHHHHHHHhhhhhcCCcccC
Q psy71 122 STLSPCIAAVSAKCDQLTS-LGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPY 184 (218)
Q Consensus 122 ~~~aeCi~i~~~hc~~L~e-vGLDl~flL~~lLr~~ie~al~~~~~~i~e~v~~r~~ed~W~~~ 184 (218)
.+..||++++++--..+-+ .|+..=++=+..-||. .+-|-+-++.=-|.++..+.+++|.|=
T Consensus 99 ~tteecveiske~gkrvgeelgiPVylYe~aatrp~-R~~La~IRkgqyE~l~ekikep~WaPD 161 (302)
T COG3643 99 TTTEECVEISKELGKRVGEELGIPVYLYEDAATRPE-RQNLADIRKGQYEGLKEKIKEPKWAPD 161 (302)
T ss_pred ccHHHHHHHHHHHHHHhhHhhCCcEEEehhhccCcc-cccHHHHhhhhhhhHHHHhcCcccCCC
Confidence 4568999999999999855 6999877777777777 566666666666777777789999873
No 27
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=47.71 E-value=39 Score=29.82 Aligned_cols=75 Identities=16% Similarity=0.161 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhCCC----CcchhhHhHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHhhhhhccCCcHHHH
Q psy71 74 SLMITELQKVAFPS----TGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLL 149 (218)
Q Consensus 74 ~~t~~ef~~~~F~~----~~~~~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~aeCi~i~~~hc~~L~evGLDl~flL 149 (218)
..+|+|+. .+|.+ .-.|+.++.+||+ .+. ..+...+...+++..+.-.+.+.+.++.|+-.|
T Consensus 18 ~~~~kel~-~flkeRa~IEe~Yak~L~klak------------~~~-~~~e~Gtl~~~w~~~~~~~E~~a~~H~~l~~~L 83 (261)
T cd07674 18 QISTKELA-DFVRERAAIEETYSKSMSKLSK------------MAS-NGSPLGTFAPMWEVFRVSSDKLALCHLELMRKL 83 (261)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh------------ccc-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777 77755 2358888889984 222 345667889999999999999999999999999
Q ss_pred hhhccccHHHHHHH
Q psy71 150 DGALRSPLTKTLKE 163 (218)
Q Consensus 150 ~~lLr~~ie~al~~ 163 (218)
...+ .++++-.++
T Consensus 84 ~~~~-~~i~~~~~~ 96 (261)
T cd07674 84 NDLI-KDINRYGDE 96 (261)
T ss_pred HHHH-HHHHHHHHH
Confidence 8665 336644433
No 28
>KOG3521|consensus
Probab=47.60 E-value=2e+02 Score=29.75 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCCcchhhHhHHHHHHH
Q psy71 66 STVFFTNLSLMITELQKVAFPSTGECAAAFVVWATRE 102 (218)
Q Consensus 66 s~v~Ft~I~~t~~ef~~~~F~~~~~~~S~~V~Wa~~e 102 (218)
.++.|+.=..++-.|.+..-.+| ..+-+||.||..+
T Consensus 275 pY~~ycle~s~cm~y~rel~~~n-~lFrafvtW~Ekq 310 (846)
T KOG3521|consen 275 PYTNYCLEHSDCMKYIRELLKEN-ELFRAFVTWAEKQ 310 (846)
T ss_pred HHHHHHHHHhHHHHHHHHHhccc-hHHHHHHHHHHhh
Confidence 34556777777888885555555 6999999999876
No 29
>PF12295 Symplekin_C: Symplekin tight junction protein C terminal; InterPro: IPR022075 This domain family is found in eukaryotes, and is approximately 180 amino acids in length. There is a single completely conserved residue P that may be functionally important. Symplekn has been localized, by light and electron microscopy, to the plaque associated with the cytoplasmic face of the tight junction-containing zone (zonula occludens) of polar epithelial cells and of Sertoli cells of testis. However, both the mRNA and the protein can also be detected in a wide range of cell types that do not form tight junctions. Careful analyses have revealed that the protein occurs in all these diverse cells in the nucleoplasm, and only in those cells forming tight junctions is it recruited, partly but specifically, to the plaque structure of the zonula occludens.
Probab=47.39 E-value=94 Score=26.24 Aligned_cols=94 Identities=13% Similarity=0.214 Sum_probs=64.7
Q ss_pred hcCCcccchhhhHHHhhCC-----hhHhHHHH---HHhcCCcccCC------CCcccccCcchhhHHHHHHHHHHHHHHH
Q psy71 11 DLKVKRITPRHLQLAIRGD-----EELDSLIK---ATIAGGARFGL------YPEVRRDGPALSYVTSASTVFFTNLSLM 76 (218)
Q Consensus 11 ~~~~~rItPrhl~lAi~nd-----~eL~~Ll~---~tia~~gv~~~------~r~l~~eG~~~~Yi~~Ls~v~Ft~I~~t 76 (218)
..+...+||-.+..++++- ..+.++.+ .-++..+|++. +.|+.-+ ..+..+|+.++.++
T Consensus 47 ~~~~~~ltp~ElLv~lH~id~~~~~~~k~~~~a~~~Cf~~~~vf~~evla~~l~ql~~~-------~~lP~LfmRTviq~ 119 (183)
T PF12295_consen 47 STGESPLTPSELLVALHNIDPEKDVPLKKIIEALDLCFSMRDVFTQEVLASALQQLVEQ-------PPLPLLFMRTVIQA 119 (183)
T ss_pred CCCCCCCCHHHHHHHHHhCCccccccHHHHHHHHHHHHcccccCCHHHHHHHHHHHHCC-------CCCcHHHHHHHHHH
Confidence 3566789999999999993 56777765 36677777764 2232222 35778888888888
Q ss_pred HHHHHHhhCCCCcchhhHhHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHH
Q psy71 77 ITELQKVAFPSTGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIA 129 (218)
Q Consensus 77 ~~ef~~~~F~~~~~~~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~aeCi~ 129 (218)
..-|- -.++|| +..+..+++||+.... ..|.-++.
T Consensus 120 ~~~~p---------~L~~FV------~~iL~rLi~kqvW~~~---~lW~Gfi~ 154 (183)
T PF12295_consen 120 LQKYP---------SLRSFV------SNILSRLIQKQVWKNK---KLWEGFIK 154 (183)
T ss_pred HHHhh---------HHHHHH------HHHHHHHHHHHHhcCh---hHHHHHHH
Confidence 87776 255666 3678899999998873 34444443
No 30
>KOG0871|consensus
Probab=47.24 E-value=8.5 Score=31.99 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=19.2
Q ss_pred chhhhhcCCcccchhhhHHHhhC
Q psy71 6 GNASKDLKVKRITPRHLQLAIRG 28 (218)
Q Consensus 6 g~~a~~~~~~rItPrhl~lAi~n 28 (218)
-.+|....|+.|.|+||.-|.+|
T Consensus 56 neic~~e~KKTIa~EHV~KALe~ 78 (156)
T KOG0871|consen 56 NEICNKEAKKTIAPEHVIKALEN 78 (156)
T ss_pred HHHHhHHhcccCCHHHHHHHHHH
Confidence 34566678999999999999987
No 31
>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C.
Probab=47.10 E-value=14 Score=27.20 Aligned_cols=24 Identities=21% Similarity=0.243 Sum_probs=18.5
Q ss_pred hhhcCCcccchhhhHHHhhCChhH
Q psy71 9 SKDLKVKRITPRHLQLAIRGDEEL 32 (218)
Q Consensus 9 a~~~~~~rItPrhl~lAi~nd~eL 32 (218)
|+.-||+.|+|..|.|..|.++.|
T Consensus 53 AkHA~R~tI~~dDV~Ll~Rrn~~L 76 (76)
T PF15630_consen 53 AKHAGRSTINMDDVKLLARRNPSL 76 (76)
T ss_dssp HHHTT-SEE-HHHHHHHTTT-HHH
T ss_pred HHhcCCCeecHHHHHHHhhcCCCC
Confidence 566799999999999999999876
No 32
>PLN00158 histone H2B; Provisional
Probab=46.91 E-value=11 Score=30.08 Aligned_cols=31 Identities=32% Similarity=0.350 Sum_probs=24.1
Q ss_pred cchhhhhcCCcccchhhhHHHhhC--ChhHhHH
Q psy71 5 AGNASKDLKVKRITPRHLQLAIRG--DEELDSL 35 (218)
Q Consensus 5 ag~~a~~~~~~rItPrhl~lAi~n--d~eL~~L 35 (218)
|+..++.+++..||+|.||-||+- ..||.+.
T Consensus 69 As~La~~nkr~TltsrEIqtAvrLvLpgELaKh 101 (116)
T PLN00158 69 AGKLARYNKKPTVTSREIQTAVRLILPGELAKH 101 (116)
T ss_pred HHHHHhccCCCcCCHHHHHHHHHHhccHHHHHH
Confidence 456677799999999999999986 4555444
No 33
>KOG0291|consensus
Probab=46.58 E-value=46 Score=34.49 Aligned_cols=131 Identities=16% Similarity=0.146 Sum_probs=84.2
Q ss_pred ccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcccccCcchhhHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhhH
Q psy71 16 RITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAA 94 (218)
Q Consensus 16 rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l~~eG~~~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~~~~~~S~ 94 (218)
-+||+-+.-|+++++=+..|+. -.+-...+|.+.=.-.--+++..-...|...|-..+.+...++. ++....--
T Consensus 722 ~vTPe~v~~al~~qey~~AlvmslRLNe~~lI~evlesvp~~~Ie~V~~~Lp~~y~erll~~l~~~l-----~~s~HieF 796 (893)
T KOG0291|consen 722 DVTPESVREALREQEYLKALVMSLRLNEYKLIKEVLESVPIKDIELVASSLPTAYLERLLKALSRFL-----ENSPHIEF 796 (893)
T ss_pred ccCHHHHHHHHhcchHHHHHHHHHhcCHHHHHHHHHHhCChhhhhhhhhcCcHHHHHHHHHHHHHHH-----hcCchHHH
Confidence 4799999999999998877764 23333333332000011122344445666666666666665565 44334455
Q ss_pred hHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHhhhhhccCCcHHHHhhhcc
Q psy71 95 FVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALR 154 (218)
Q Consensus 95 ~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~aeCi~i~~~hc~~L~evGLDl~flL~~lLr 154 (218)
.+.|++.=+.+|...+++.-..-.+.++.+++.|.....+..+|+. .=.|.|.-+++
T Consensus 797 ~l~W~~~il~~hG~~~~~~~~~~~~~~~~lqk~i~r~~~~l~kl~~---~Nky~L~~lv~ 853 (893)
T KOG0291|consen 797 YLRWLRAILTYHGSSLKRRAETLLPALTSLQKSIVRHIDDLSKLCS---LNKYTLRYLVS 853 (893)
T ss_pred HHHHHHHHHHHhhhhhhccceehhhHHHHHHHHHHHHHHHHHHHhh---ccHHHHHHHHh
Confidence 5699999999999999999877767788888888866666666655 33444444443
No 34
>PTZ00463 histone H2B; Provisional
Probab=46.01 E-value=11 Score=30.01 Aligned_cols=31 Identities=29% Similarity=0.290 Sum_probs=24.0
Q ss_pred cchhhhhcCCcccchhhhHHHhhC--ChhHhHH
Q psy71 5 AGNASKDLKVKRITPRHLQLAIRG--DEELDSL 35 (218)
Q Consensus 5 ag~~a~~~~~~rItPrhl~lAi~n--d~eL~~L 35 (218)
|+..|+.+++..||+|.||-|++- ..||.+.
T Consensus 70 As~La~~nkr~TltsrEIQtAvrLlLpGELaKh 102 (117)
T PTZ00463 70 ASRLCKYTRRDTLSSREIQTAIRLVLPGELAKH 102 (117)
T ss_pred HHHHHHhcCCCcCCHHHHHHHHhhcccHHHHHh
Confidence 456677899999999999999986 4445443
No 35
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=44.52 E-value=59 Score=29.86 Aligned_cols=86 Identities=14% Similarity=0.166 Sum_probs=58.2
Q ss_pred hHhHHHHHHhcCCcccCC-----CCcccccCcchhhHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhhHhHHHHHHHHHH
Q psy71 31 ELDSLIKATIAGGARFGL-----YPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNL 105 (218)
Q Consensus 31 eL~~Ll~~tia~~gv~~~-----~r~l~~eG~~~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~~~~~~S~~V~Wa~~eve~ 105 (218)
+|+.|.+.-..--|++.. .+++.|+|-+. .+|.=||...+++..--. ..=++. |+
T Consensus 158 DlERL~~gELvY~GtLRTpvs~ll~kve~~g~~~----~~ssE~FAitAD~~lilg-~I~eed--YT------------- 217 (330)
T COG1548 158 DLERLKNGELVYVGTLRTPVSFLLNKVEFEGKLT----PLSSEYFAITADASLILG-KITEED--YT------------- 217 (330)
T ss_pred hHHHHhcCceEEEeeccccHHHHhhhhccCCCcc----cccHHHHHHHHHHHHHhc-CCChhh--cC-------------
Confidence 366777655555566643 78888888754 677778887766655444 322221 21
Q ss_pred HHHHHHHhhccCCCCcccHHHHHH-HHHHHHhhhhhccCC
Q psy71 106 FVSHVIRELFVTQSSLSTLSPCIA-AVSAKCDQLTSLGLD 144 (218)
Q Consensus 106 F~~l~~rqv~~~~~~l~~~aeCi~-i~~~hc~~L~evGLD 144 (218)
--.+++..++-.||+. ++|.-|..|+++|=+
T Consensus 218 --------c~TpDGaGks~eecmrRlaR~vCaDleelg~~ 249 (330)
T COG1548 218 --------CDTPDGAGKSREECMRRLARTVCADLEELGEE 249 (330)
T ss_pred --------CCCCCCCCCCHHHHHHHHHHHHhCCHHHcChh
Confidence 1245788899999985 688899999999954
No 36
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=42.66 E-value=1.1e+02 Score=27.94 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHhh----ccC-------CCCcccHHHHHHHHHHHHhhhhhccCC----cHHHHhhhccccHHHHHHH-
Q psy71 100 TREFNLFVSHVIREL----FVT-------QSSLSTLSPCIAAVSAKCDQLTSLGLD----LRYLLDGALRSPLTKTLKE- 163 (218)
Q Consensus 100 ~~eve~F~~l~~rqv----~~~-------~~~l~~~aeCi~i~~~hc~~L~evGLD----l~flL~~lLr~~ie~al~~- 163 (218)
.++++.|....+++= +.+ .++-.++...++....|++.+...|++ +........ ..-+++++.
T Consensus 90 ~~~~~~~g~~~~~~~irls~Hp~y~inL~S~~~ev~e~Si~~L~~~~~~~~~lG~~~~~~vViHpG~~~-~~ke~al~r~ 168 (303)
T PRK02308 90 KEELREIGEFIKEHNIRLSFHPDQFVVLNSPKPEVVENSIKDLEYHAKLLDLMGIDDSSKINIHVGGAY-GDKEKALERF 168 (303)
T ss_pred HHHHHHHHHHHHHcCCCeeccChhhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCccC-CCHHHHHHHH
Confidence 456677777766541 111 156678889999999999999999999 444444432 344555543
Q ss_pred --HHHHHHHHHhhhhhcCCcccCCCCCHHHHHHHHHHHhhcCcccccccccCCcc
Q psy71 164 --TRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTGKFH 216 (218)
Q Consensus 164 --~~~~i~e~v~~r~~ed~W~~~nl~~~~~~~k~~~e~~~lGl~~~~~y~~~~~~ 216 (218)
+..++.+.++.+..=|+=-.. .|.+.+-.++++. |++ .|.|.||
T Consensus 169 ~~~l~~l~~~~~~~L~LEN~~~~--~t~~ell~I~e~~---~ip----v~~D~hH 214 (303)
T PRK02308 169 IENIKKLPESIKKRLTLENDDKT--YTVEELLYICEKL---GIP----VVFDYHH 214 (303)
T ss_pred HHHHHHhhHHhCCEEEEeeCCCC--CCHHHHHHHHHHc---CCC----EEEeHHh
Confidence 223333333221111111111 5666666666655 442 4555555
No 37
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=40.02 E-value=1.9e+02 Score=23.09 Aligned_cols=69 Identities=16% Similarity=0.173 Sum_probs=38.4
Q ss_pred cchhhHhHHHHHHH----HHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHhhhhhccCCcHHHHhhhccccHHHHHHHH
Q psy71 89 GECAAAFVVWATRE----FNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKET 164 (218)
Q Consensus 89 ~~~~S~~V~Wa~~e----ve~F~~l~~rqv~~~~~~l~~~aeCi~i~~~hc~~L~evGLDl~flL~~lLr~~ie~al~~~ 164 (218)
+..+...+.||..+ ...|...+-+..+....++...+.-.+ .+.+.|||.......+=.+.+++++..+
T Consensus 86 s~~a~~~~~aa~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~l~~-------ia~~~Gld~~~~~~~~~s~~~~~~l~~~ 158 (193)
T cd03025 86 SAPASRAIKAARLQGPERLLEMLKAIQRAHYVEGRDLADTEVLRE-------LAIELGLDVEEFLEDFQSDEAKQAIQED 158 (193)
T ss_pred chHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCCCCCCHHHHHH-------HHHHcCCCHHHHHHHHcChHHHHHHHHH
Confidence 44567788899754 345555555555555455555333222 3466899876555555445554444443
No 38
>smart00803 TAF TATA box binding protein associated factor. TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.
Probab=39.62 E-value=10 Score=26.80 Aligned_cols=25 Identities=20% Similarity=0.178 Sum_probs=20.3
Q ss_pred cccchhhhhcCCcccchhhhHHHhh
Q psy71 3 ELAGNASKDLKVKRITPRHLQLAIR 27 (218)
Q Consensus 3 elag~~a~~~~~~rItPrhl~lAi~ 27 (218)
+-|.+.++..|++++|+.+|..|++
T Consensus 41 ~~A~k~~~hakRktlt~~DI~~Alk 65 (65)
T smart00803 41 QEALKFMRHSKRTTLTTSDIDSALR 65 (65)
T ss_pred HHHHHHHHHhCCCeecHHHHHHHhC
Confidence 3455677889999999999999874
No 39
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.15 E-value=1.8e+02 Score=26.19 Aligned_cols=123 Identities=16% Similarity=0.223 Sum_probs=77.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhhHhH-HH---HHHHHHHHHHHHHHhhccC--C-CCcccHHHHHHHH
Q psy71 59 LSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFV-VW---ATREFNLFVSHVIRELFVT--Q-SSLSTLSPCIAAV 131 (218)
Q Consensus 59 ~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~~~~~~S~~V-~W---a~~eve~F~~l~~rqv~~~--~-~~l~~~aeCi~i~ 131 (218)
..-+..++.+-|+.|.-...-- .=|++-| -+|+ -| |.+|...| ++++.++-+- + +++.+=.--++.+
T Consensus 77 aallHAiAHIEfNAInLaLDa~--~RF~~~p---~~F~~dWm~VA~EE~~HF-~Ll~~~L~~LG~~YGDfpaHdgLw~~a 150 (268)
T COG2833 77 AALLHAIAHIEFNAINLALDAV--YRFAPLP---LQFYDDWMRVADEEAKHF-RLLRERLKSLGYDYGDFPAHDGLWQMA 150 (268)
T ss_pred HHHHHHHHHHhhhhHHHHHHHH--HHhcCCc---HHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCcccccHHHHH
Confidence 3346788999999998655543 3465443 3444 66 56676555 6677776332 2 4444433334444
Q ss_pred HHHHh-----------hhhhccCCcHHHHhhhccccHHHHHHHHHHHH-HHHHhhhhhcCCcccCCCC
Q psy71 132 SAKCD-----------QLTSLGLDLRYLLDGALRSPLTKTLKETRDKL-SDTIKLRCAEDRWKPYNLN 187 (218)
Q Consensus 132 ~~hc~-----------~L~evGLDl~flL~~lLr~~ie~al~~~~~~i-~e~v~~r~~ed~W~~~nl~ 187 (218)
..-.. -|+..|||-++-+..-++..=..+--+..+-| +|-++|-+-.++|--.-..
T Consensus 151 ~~T~~dl~~RmalVprvLEARGLDatP~l~aK~~~~gD~~~~~iLdIIlrDEigHVaiGn~Wyrflc~ 218 (268)
T COG2833 151 EATANDLLARMALVPRVLEARGLDATPSLRAKLAETGDSEAAAILDIILRDEIGHVAIGNKWYRFLCA 218 (268)
T ss_pred HHhhcCHHHHhhhhhhHHhhccCCCCHHHHHHHHHcCchHHHHHHHHHHhccccceeechHHHHHHHH
Confidence 33332 36789999999988766655444445677777 7888888888999765443
No 40
>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind
Probab=34.97 E-value=14 Score=26.46 Aligned_cols=28 Identities=21% Similarity=0.264 Sum_probs=23.4
Q ss_pred ccccchhhhhcCCcccchhhhHHHhhCC
Q psy71 2 LELAGNASKDLKVKRITPRHLQLAIRGD 29 (218)
Q Consensus 2 Lelag~~a~~~~~~rItPrhl~lAi~nd 29 (218)
++-|...|+..|++.+.|+-|+++++..
T Consensus 40 ~~~a~~lAkHr~~~tv~~~Di~l~l~r~ 67 (72)
T cd07981 40 VEDACRLAKHRKSDTLEVKDVQLHLERN 67 (72)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 4556778899999999999999998753
No 41
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=33.75 E-value=3.1e+02 Score=24.22 Aligned_cols=125 Identities=10% Similarity=0.101 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHhhC-------CCCcchhhHhHHHHHHHH---HHHHHHHHHhhccCC---CCcccHHHHHHHHHHHH
Q psy71 69 FFTNLSLMITELQKVAF-------PSTGECAAAFVVWATREF---NLFVSHVIRELFVTQ---SSLSTLSPCIAAVSAKC 135 (218)
Q Consensus 69 ~Ft~I~~t~~ef~~~~F-------~~~~~~~S~~V~Wa~~ev---e~F~~l~~rqv~~~~---~~l~~~aeCi~i~~~hc 135 (218)
-+..+...+.+.. -.| ..|+..+..++.||+.+= +.|+..+-+-.|... .+..++.+|.
T Consensus 76 ~~~~~~~~~~~~G-i~~~f~~~~~~~nt~~Ah~l~~~A~~~G~~~~~~~~~lf~AyF~eg~nI~D~dVL~diA------- 147 (225)
T COG2761 76 AHARLEELAEEEG-IDFNFDAIVPAPNTLDAHRLIKAAELQGKAQDRFLEALFEAYFEEGRNIGDEDVLADIA------- 147 (225)
T ss_pred HHHHHHHhhHhcC-cccchhhccCCCchHHHHHHHHHHHHhCchHHHHHHHHHHHHhccCCCCCcHHHHHHHH-------
Confidence 3455555555533 222 224455688889999865 467777777777754 4455555554
Q ss_pred hhhhhccCCcHHHHhhhccccHHHHHHHHHHHHHHH----HhhhhhcCCcccCCCCCHHHHHHHHHHHhhcCc
Q psy71 136 DQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDT----IKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGL 204 (218)
Q Consensus 136 ~~L~evGLDl~flL~~lLr~~ie~al~~~~~~i~e~----v~~r~~ed~W~~~nl~~~~~~~k~~~e~~~lGl 204 (218)
.++|||..---.-|-.+...+++..-.+...+. |=-..-+++|--.-.+++..+...|.++..-+-
T Consensus 148 ---~~~GLD~~~~~~~L~s~~~~~avr~d~~~A~e~gI~gVP~fv~d~~~~V~Gaq~~~v~~~al~~~~~~~~ 217 (225)
T COG2761 148 ---EEVGLDREEFKADLASDAAKDAVRQDEAAAQEMGIRGVPTFVFDGKYAVSGAQPYDVLEDALRQLLAEKA 217 (225)
T ss_pred ---HHhCCCHHHHHHHHhChHHHHHHHHHHHHHHHCCCccCceEEEcCcEeecCCCCHHHHHHHHHHHHhccc
Confidence 379999988888887777777776655544332 222223688988888999999999999876443
No 42
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=32.98 E-value=12 Score=28.26 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=1.3
Q ss_pred cchhhhhcCCcccchhhhHHHhhCChh
Q psy71 5 AGNASKDLKVKRITPRHLQLAIRGDEE 31 (218)
Q Consensus 5 ag~~a~~~~~~rItPrhl~lAi~nd~e 31 (218)
|.+.|...++++|+++++..++|+|+.
T Consensus 43 A~~~a~~rg~~~i~~eDl~F~lR~D~~ 69 (93)
T PF02269_consen 43 AMEVAQRRGSKKIKVEDLLFLLRKDPK 69 (93)
T ss_dssp HHC------------------------
T ss_pred HHHHHhccccCcCcHHHHHHHHhcCHH
Confidence 345566667789999999999999986
No 43
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=32.60 E-value=1e+02 Score=24.29 Aligned_cols=41 Identities=10% Similarity=0.164 Sum_probs=26.0
Q ss_pred HHHHHHhhhhhcCCcccCCCCCHHHHHHHHHHHhhcCccccccccc
Q psy71 167 KLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLT 212 (218)
Q Consensus 167 ~i~e~v~~r~~ed~W~~~nl~~~~~~~k~~~e~~~lGl~~~~~y~~ 212 (218)
|+.|+||..+...++ .=+.=++.+.--|++|||+..+.+-+
T Consensus 66 R~lE~iK~K~~~~~~-----~Y~~~lqElkPtl~ELGI~t~EeLg~ 106 (108)
T PF02284_consen 66 RILEGIKDKCGNKKE-----IYPYILQELKPTLEELGIPTPEELGY 106 (108)
T ss_dssp HHHHHHHHHTTT-TT-----HHHHHHHHHHHHHHHHT---TTTTTT
T ss_pred HHHHHHHHHccChHH-----HHHHHHHHHhhHHHHhCCCCHHHhCC
Confidence 677888887776653 22455777777889999987666544
No 44
>PF13309 HTH_22: HTH domain
Probab=31.33 E-value=58 Score=22.69 Aligned_cols=26 Identities=12% Similarity=0.355 Sum_probs=23.0
Q ss_pred CCcccCCCCCHHHHHHHHHHHhhcCc
Q psy71 179 DRWKPYNLNNRQQRDKFLTEFTDAGL 204 (218)
Q Consensus 179 d~W~~~nl~~~~~~~k~~~e~~~lGl 204 (218)
+...|....+++..-.++..|++-|+
T Consensus 13 ~~~~~~~~l~~~~k~~iV~~L~~~G~ 38 (64)
T PF13309_consen 13 EVGKPPSRLSKEEKKEIVRQLYEKGI 38 (64)
T ss_pred HhCCChhhCCHHHHHHHHHHHHHCCC
Confidence 44677888999999999999999998
No 45
>KOG1744|consensus
Probab=29.80 E-value=31 Score=27.91 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.2
Q ss_pred ccchhhhhcCCcccchhhhHHHhhC
Q psy71 4 LAGNASKDLKVKRITPRHLQLAIRG 28 (218)
Q Consensus 4 lag~~a~~~~~~rItPrhl~lAi~n 28 (218)
.||.-|+.+|+..|+-|++|.|++-
T Consensus 78 ea~rla~y~krstisSreiqta~rL 102 (127)
T KOG1744|consen 78 EAGRLAHYNKRSTISSREIQTAVRL 102 (127)
T ss_pred HHhhhhhhcCCCcccHHHHHHHHHH
Confidence 4677889999999999999999975
No 46
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=29.73 E-value=3e+02 Score=22.18 Aligned_cols=88 Identities=11% Similarity=0.112 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHh------hCCCCcchhhHhHHHHHHH--HHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHhhhhhccC
Q psy71 72 NLSLMITELQKV------AFPSTGECAAAFVVWATRE--FNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGL 143 (218)
Q Consensus 72 ~I~~t~~ef~~~------~F~~~~~~~S~~V~Wa~~e--ve~F~~l~~rqv~~~~~~l~~~aeCi~i~~~hc~~L~evGL 143 (218)
-+...++.+. - .||.++..+...+.||..+ ...|...+-+..+....+++.-+.= .+.+.+.||
T Consensus 72 ~~~r~a~~~g-i~~~~~~~~~~~s~~a~~~~~~a~~~~~~~~~~~~lf~a~~~~~~~i~~~~~l-------~~~a~~~Gl 143 (201)
T cd03024 72 RVEAAAAAEG-LEFDFDRVRPPNTFDAHRLIHLAKEQGKQDALVEALFRAYFTEGKDIGDRDVL-------VDLAEEAGL 143 (201)
T ss_pred HHHHHHHHcC-CcccCCCCccCCcHHHHHHHHHHhccCcHHHHHHHHHHHHHccCCCCCCHHHH-------HHHHHHcCC
Confidence 4555555543 2 2343444567788898643 3445555444445443343332211 123466899
Q ss_pred CcHHHHhhhccccHHHHHHHHHHH
Q psy71 144 DLRYLLDGALRSPLTKTLKETRDK 167 (218)
Q Consensus 144 Dl~flL~~lLr~~ie~al~~~~~~ 167 (218)
|-.-....+=.+..++.++.+.+.
T Consensus 144 d~~~~~~~~~~~~~~~~~~~~~~~ 167 (201)
T cd03024 144 DAAEARAVLASDEYADEVRADEAR 167 (201)
T ss_pred CHHHHHHHhcCcccchHHHHHHHH
Confidence 876555555555555555554443
No 47
>COG2924 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.49 E-value=1.1e+02 Score=23.10 Aligned_cols=67 Identities=19% Similarity=0.208 Sum_probs=35.9
Q ss_pred HHhhhh--hccCCcHHHHhhhccccHHHHHHHHHHHHHHHHhhhhhcCCcccCCCCCHHHHHHHHHHHhhcC
Q psy71 134 KCDQLT--SLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAG 203 (218)
Q Consensus 134 hc~~L~--evGLDl~flL~~lLr~~ie~al~~~~~~i~e~v~~r~~ed~W~~~nl~~~~~~~k~~~e~~~lG 203 (218)
+|..|. .-||||..+=..+=.+-....-+..-+.-...=-.++.| ..+|+.++..++.|-.||.++=
T Consensus 6 fC~~l~keaeGlDf~~yPGelGkrI~~~isk~aWa~W~~~QTMLINE---~rLnm~n~e~Rk~Leqem~~fl 74 (90)
T COG2924 6 FCTKLQKEAEGLDFQPYPGELGKRIYNNISKEAWAQWQKKQTMLINE---KRLNMMNAEHRKLLEQEMVNFL 74 (90)
T ss_pred hhHHhhhcccCCCCCCCchHHHHHHHHHHhHHHHHHHHHhhheeech---hhcCcCCHHHHHHHHHHHHHHh
Confidence 576663 489999766444322222222111111111111112222 2488999999999999998753
No 48
>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]
Probab=28.80 E-value=22 Score=27.10 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=21.9
Q ss_pred cccchhhhhcCCcccchhhhHHHhhC
Q psy71 3 ELAGNASKDLKVKRITPRHLQLAIRG 28 (218)
Q Consensus 3 elag~~a~~~~~~rItPrhl~lAi~n 28 (218)
|-|...|.+-|++.|+|+.|.+|++-
T Consensus 58 ~~A~~~A~ha~RKTV~~~DI~la~~~ 83 (91)
T COG2036 58 EDAVELAEHAKRKTVKAEDIKLALKR 83 (91)
T ss_pred HHHHHHHHHcCCCeecHHHHHHHHHH
Confidence 45667788899999999999999763
No 49
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=27.99 E-value=50 Score=25.74 Aligned_cols=44 Identities=11% Similarity=0.228 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhhhcCCcccCCCCCHHHHHHHHHHHhhcCcc
Q psy71 162 KETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLT 205 (218)
Q Consensus 162 ~~~~~~i~e~v~~r~~ed~W~~~nl~~~~~~~k~~~e~~~lGl~ 205 (218)
..+.+.+.+.++...-++=+..++...++.+.++++++++.|++
T Consensus 127 lg~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~ 170 (175)
T PF13727_consen 127 LGDLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVR 170 (175)
T ss_dssp E--GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-E
T ss_pred EcCHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCE
Confidence 36788888999988888999999999999999999999999984
No 50
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=27.91 E-value=21 Score=25.53 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=18.0
Q ss_pred cccchhhhhcCCcccchhhhHHHhh
Q psy71 3 ELAGNASKDLKVKRITPRHLQLAIR 27 (218)
Q Consensus 3 elag~~a~~~~~~rItPrhl~lAi~ 27 (218)
+-|.+-.+..|++++|+.+|..|+|
T Consensus 42 q~a~kfm~hskR~~Lt~~Di~~ALr 66 (66)
T PF02969_consen 42 QEALKFMRHSKRTKLTTDDINSALR 66 (66)
T ss_dssp HHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHhC
Confidence 3455677889999999999999875
No 51
>cd07978 TAF13 The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Several hy
Probab=27.12 E-value=39 Score=25.54 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=19.5
Q ss_pred hhhhhcCCcccchhhhHHHhhCChh
Q psy71 7 NASKDLKVKRITPRHLQLAIRGDEE 31 (218)
Q Consensus 7 ~~a~~~~~~rItPrhl~lAi~nd~e 31 (218)
+.|. .++.+++|+.+..++|+|+.
T Consensus 46 ~~A~-~r~~k~~~eD~~FliR~D~~ 69 (92)
T cd07978 46 EVAQ-RRRGKVKVEDLIFLLRKDPK 69 (92)
T ss_pred HHHH-cCCCCCCHHHHHHHHhcCHH
Confidence 3444 46778899999999999986
No 52
>PF14613 DUF4449: Protein of unknown function (DUF4449)
Probab=26.78 E-value=63 Score=27.15 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=18.8
Q ss_pred cHHHHhhhccccHHHHHHHHHHH
Q psy71 145 LRYLLDGALRSPLTKTLKETRDK 167 (218)
Q Consensus 145 l~flL~~lLr~~ie~al~~~~~~ 167 (218)
|.++|...+||.+++||++..+-
T Consensus 23 fKPll~~~vR~alqKalE~qIr~ 45 (164)
T PF14613_consen 23 FKPLLLKVVRPALQKALEKQIRD 45 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999865443
No 53
>PF06798 PrkA: PrkA serine protein kinase C-terminal domain; InterPro: IPR010650 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry is found at the C terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=25.40 E-value=3.3e+02 Score=24.24 Aligned_cols=134 Identities=13% Similarity=0.206 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhCCCC-----cchhhHhHHHHHHH-------------HHHHHHHHHHhhccCC---C
Q psy71 61 YVTSASTVFFTNLSLMITELQKVAFPST-----GECAAAFVVWATRE-------------FNLFVSHVIRELFVTQ---S 119 (218)
Q Consensus 61 Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~~-----~~~~S~~V~Wa~~e-------------ve~F~~l~~rqv~~~~---~ 119 (218)
||..+-.-|.-.+.+=+.+....+|.+. ..|....--|+.++ -+.|+.-+-.++-.+. .
T Consensus 89 ~l~~v~~~Y~~~v~~EV~~A~~~~~ee~~~~l~~nYl~~v~a~~~~~~~~d~~TGe~~~pdE~~mrsIEe~igi~~~~~~ 168 (254)
T PF06798_consen 89 FLKSVRKEYDERVEKEVQEAFYYSYEEQIQNLFENYLDHVEAWINDEKVKDPFTGEELEPDERFMRSIEERIGISEEAKK 168 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHhcCCeeeCCCCcccCCccHHHHHHHHHhcCCCcccHH
Confidence 5666666666666655554441244431 11344444577644 1678888888874433 3
Q ss_pred CcccHHHHHHHHHHHHhhhhhccCCcHHHHhhhccccHHHHHHHHHHHHHHHHhhhhhcCCcccCCCCCHHHHHHHHHHH
Q psy71 120 SLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEF 199 (218)
Q Consensus 120 ~l~~~aeCi~i~~~hc~~L~evGLDl~flL~~lLr~~ie~al~~~~~~i~e~v~~r~~ed~W~~~nl~~~~~~~k~~~e~ 199 (218)
+++- + |.... ..+.-.|-.|.+.....|+..+++=|.+..+.++..+ .+.+.+.+.++....+.+++.|
T Consensus 169 ~FR~--e-i~~~~---~~~~~~g~~~~~~~~e~Lr~~iEkkL~~d~~~~~~~~-----t~~~k~~d~e~~~~~~~~i~rL 237 (254)
T PF06798_consen 169 DFRR--E-IIKYI---SALAREGKKFDYTSYERLREAIEKKLFSDVKDLIKII-----TESSKTPDKEQQRKIDEVIERL 237 (254)
T ss_pred HHHH--H-HHHHH---HHHHcCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhc-----chhccCCCHHHHHHHHHHHHHH
Confidence 3443 3 33222 6677789999998889999888888876655554433 2345578889999999999999
Q ss_pred -hhcCcc
Q psy71 200 -TDAGLT 205 (218)
Q Consensus 200 -~~lGl~ 205 (218)
.+.|-+
T Consensus 238 ~~~~GY~ 244 (254)
T PF06798_consen 238 IKKYGYC 244 (254)
T ss_pred HHcCCCC
Confidence 888864
No 54
>PF03851 UvdE: UV-endonuclease UvdE; InterPro: IPR004601 Schizosaccharomyces pombe ultraviolet damage endonuclease (UVDE or Uve1p) performs the initial step in an alternative excision repair pathway for UV-induced DNA damage. This DNA repair pathway was originally thought to be specific for UV damage, however Uve1p also recognises UV-induced bipyrimidine photoadducts and other non-UV-induced DNA adducts []. The Deinococcus radiodurans UVSE protein has also shown to be a UV DNA damage endonuclease that catalyzes repair of UV-induced DNA damage by a similar mechanism [].; GO: 0004519 endonuclease activity, 0006289 nucleotide-excision repair, 0009411 response to UV; PDB: 3BZG_A 3BZJ_A 3C0L_A 3C0S_A 3C0Q_A.
Probab=25.25 E-value=3e+02 Score=24.92 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHh------------hccCCCCcccHHHHHHHHHHHHhhhhhccCCcHH--HHh---hhccccHHHHH
Q psy71 99 ATREFNLFVSHVIRE------------LFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRY--LLD---GALRSPLTKTL 161 (218)
Q Consensus 99 a~~eve~F~~l~~rq------------v~~~~~~l~~~aeCi~i~~~hc~~L~evGLDl~f--lL~---~lLr~~ie~al 161 (218)
+.++++.-...++++ |+++ +.-.++...|+...-|+.+|...|++=+. .+. +.--..=++|+
T Consensus 85 ~~~~l~~iG~~~~~~~iRls~HP~qf~vLnS-p~~~Vv~~si~~L~yH~~~Ld~mg~~~~~~~~i~IH~GG~YgdK~~al 163 (275)
T PF03851_consen 85 FAEELAEIGDLAKENGIRLSMHPDQFTVLNS-PREEVVENSIRDLEYHARLLDLMGLDDSPDHKINIHVGGVYGDKEAAL 163 (275)
T ss_dssp HHHHHHHHHHHHHHTT-EEEE---TT--TT--SSHHHHHHHHHHHHHHHHHHHHTT-TT----EEEEE----SS-HHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEecCCcceeCCC-CCHHHHHHHHHHHHHHHHHHHHcCCCcccccEEEEeeCCCCCChHHHH
Confidence 345556666666655 3444 77889999999999999999999998763 221 11222334555
Q ss_pred ---HHHHHHHHHHHhhhhhc
Q psy71 162 ---KETRDKLSDTIKLRCAE 178 (218)
Q Consensus 162 ---~~~~~~i~e~v~~r~~e 178 (218)
..+..++-+.++.|..=
T Consensus 164 ~RF~~~~~~L~~~ir~rL~l 183 (275)
T PF03851_consen 164 ERFIENFKRLPESIRKRLTL 183 (275)
T ss_dssp HHHHHHHHT--HHHHTTEEE
T ss_pred HHHHHHHhhCCHhhhhcEEE
Confidence 36778888999988764
No 55
>PF09453 HIRA_B: HIRA B motif; InterPro: IPR019015 The HirA B (Histone regulatory homologue A binding) motif is the essential binding interface between IPR011494 from INTERPRO and ASF1a, of approx. 40 residues. It forms an antiparallel beta-hairpin that binds perpendicular to the strands of the beta-sandwich of ASF1a N-terminal core domain, via beta-sheet, salt bridge and van der Waals interactions []. The two histone chaperone proteins, HIRA and ASF1a, form a heterodimer with histones H3 and H4. HIRA is the human orthologue of Hir proteins known to silence histone gene expression and create transcriptionally silent heterochromatin in yeast, flies, plants and humans. The HIR complex is composed of HIR1, HIR2, HIR3 and HPC2, and interacts with ASF1. The HIR complex cooperates with ASF1 to promote replication-independent chromatin assembly. The HIR complex is also required for the periodic repression of three of the four histone gene loci during cell cycle as well as for autogenous regulation of the HTA1-HTB1 locus by H2A and H2B. DNA-binding by the HIR complex may repress transcription by inhibiting nucleosome remodeling by the SWI/SNF complex. The HIR complex may also be required for transcriptional silencing of centromeric, telomeric and mating-type loci in the absence of CAF-1. ; GO: 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0016568 chromatin modification, 0005634 nucleus; PDB: 2I32_E.
Probab=25.02 E-value=27 Score=20.35 Aligned_cols=12 Identities=33% Similarity=0.404 Sum_probs=7.2
Q ss_pred hcCCcccchhhh
Q psy71 11 DLKVKRITPRHL 22 (218)
Q Consensus 11 ~~~~~rItPrhl 22 (218)
.++|+||+|--|
T Consensus 8 k~GKkRi~P~li 19 (24)
T PF09453_consen 8 KDGKKRIAPTLI 19 (24)
T ss_dssp TTS-EEEE-EE-
T ss_pred cCCceEeccEEe
Confidence 578999999654
No 56
>PF08369 PCP_red: Proto-chlorophyllide reductase 57 kD subunit; InterPro: IPR013580 This domain is found in bacteria and plant chloroplast proteins. It often appears at the C-terminal of nitrogenase component 1 type oxidoreductases (IPR000510 from INTERPRO) and sometimes independently in bacterial proteins such as the proto-chlorophyllide reductase subunit B of the cyanobacterium Synechocystis. This domain is also associated with chlorophyllide reductase subunit Z, converts chlorophylls (Chl) into bacteriochlorophylls (BChl) by reducing ring B of the tetrapyrrole.; GO: 0016491 oxidoreductase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process, 0055114 oxidation-reduction process; PDB: 2KRU_A 2L09_A.
Probab=24.69 E-value=49 Score=21.72 Aligned_cols=19 Identities=16% Similarity=0.153 Sum_probs=14.4
Q ss_pred hhhhhcCCcccchhhhHHH
Q psy71 7 NASKDLKVKRITPRHLQLA 25 (218)
Q Consensus 7 ~~a~~~~~~rItPrhl~lA 25 (218)
..|++++...||+.|+.-|
T Consensus 26 ~~Ar~~G~~~IT~e~v~~A 44 (45)
T PF08369_consen 26 KYARERGYDEITVEVVDAA 44 (45)
T ss_dssp HHHHHCT-SEE-HHHHHHH
T ss_pred HHHHHcCCCeECHHHHHhh
Confidence 5688999999999998765
No 57
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=24.69 E-value=1.4e+02 Score=28.37 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=40.8
Q ss_pred HhhhccccHH-------HHHHHHHHHHHHHHhhhhhcCCcccCCCCCHHHHHHHHHHHhhcC
Q psy71 149 LDGALRSPLT-------KTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAG 203 (218)
Q Consensus 149 L~~lLr~~ie-------~al~~~~~~i~e~v~~r~~ed~W~~~nl~~~~~~~k~~~e~~~lG 203 (218)
+-.+|+|-++ +-|+.+++.+...+......|-|.||.--+++++++|-.....|+
T Consensus 301 ~~~~l~P~l~~~dp~l~~~id~~f~~v~~lL~~~~~~~G~~~y~~l~~~dr~~L~~~v~~La 362 (375)
T PRK10378 301 IVDLLRPLLEKANPELLAKVDANFKKVDTILAKYRTKDGFETYDKLTDADRNALKGPITALA 362 (375)
T ss_pred HHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhcCHHHHHHHHHHHHHHH
Confidence 3456777555 567788888877776666666799999999998888777766654
No 58
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=24.02 E-value=1.4e+02 Score=26.34 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=47.1
Q ss_pred cHHHHHHHHHHHHhhhhh-----ccCCcHHHHhhhccccHHHHHHHHHHHHHHHHhhhhhcCCcccCCCCCHHHHHHHHH
Q psy71 123 TLSPCIAAVSAKCDQLTS-----LGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLT 197 (218)
Q Consensus 123 ~~aeCi~i~~~hc~~L~e-----vGLDl~flL~~lLr~~ie~al~~~~~~i~e~v~~r~~ed~W~~~nl~~~~~~~k~~~ 197 (218)
-..+|+++...-+..|-+ .|-||..++-..+...-...=++.++||.+.++..-.++.| +.+|++
T Consensus 5 ky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~----------r~~fi~ 74 (260)
T PF04190_consen 5 KYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPE----------RKKFIK 74 (260)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TT----------HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcch----------HHHHHH
Confidence 356889988888877644 58899888777776665555567789999999877666666 666766
Q ss_pred HHhh
Q psy71 198 EFTD 201 (218)
Q Consensus 198 e~~~ 201 (218)
.+-.
T Consensus 75 ~ai~ 78 (260)
T PF04190_consen 75 AAIK 78 (260)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 59
>COG4628 Uncharacterized conserved protein [Function unknown]
Probab=23.84 E-value=73 Score=25.60 Aligned_cols=30 Identities=13% Similarity=0.289 Sum_probs=24.4
Q ss_pred hhCCCCcchhhHhH-----HHHHHHHHHH-HHHHHH
Q psy71 83 VAFPSTGECAAAFV-----VWATREFNLF-VSHVIR 112 (218)
Q Consensus 83 ~~F~~~~~~~S~~V-----~Wa~~eve~F-~~l~~r 112 (218)
.||.+.|+..|++- .||++.+|.| ...|+|
T Consensus 43 nCF~ndPSi~SSlKfLrkT~WARekvEa~Yl~~~~r 78 (136)
T COG4628 43 NCFHNDPSIKSSLKFLRKTPWAREKVEALYLYRFKR 78 (136)
T ss_pred ccccCCccHHHHHHHHhcCHhHHHHHHHHHHHHHHh
Confidence 69999998888864 7999999986 456666
No 60
>TIGR00629 uvde UV damage endonuclease UvdE. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=23.54 E-value=4.6e+02 Score=24.20 Aligned_cols=58 Identities=22% Similarity=0.293 Sum_probs=41.3
Q ss_pred CCcccHHHHHHHHHHHHhhhhhccCCcH--------HHHhhhccccHHHHHH---HHHHHHHHHHhhhhh
Q psy71 119 SSLSTLSPCIAAVSAKCDQLTSLGLDLR--------YLLDGALRSPLTKTLK---ETRDKLSDTIKLRCA 177 (218)
Q Consensus 119 ~~l~~~aeCi~i~~~hc~~L~evGLDl~--------flL~~lLr~~ie~al~---~~~~~i~e~v~~r~~ 177 (218)
+.-.++...++....|++.|...|++-+ +...+.. ..-++|++ +|..++.+.++.|..
T Consensus 123 ~~~evv~~Si~~L~~ha~~l~~mg~~~~~~~~~~iviH~Gg~~-gdk~~alerf~~n~~~L~~~i~~rL~ 191 (312)
T TIGR00629 123 PRESVVKSAIRDLAYHDEMLSAMKLAEQLNKDAVIIIHIGGAF-GNKDTTLARFHQNYKRLSQSIKERLV 191 (312)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCceEEEccCcCC-CCHHHHHHHHHHHHHHhhHHHHhcEE
Confidence 5668899999999999999999998743 2333333 44566665 577778888754443
No 61
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=23.45 E-value=82 Score=27.92 Aligned_cols=80 Identities=23% Similarity=0.177 Sum_probs=57.9
Q ss_pred cccHHHHHHHHHHHHhhhhhccCCcHHHHhhhccc------cHHHHHHHHHHHHHHHHhhhhhcCCcccCCCCCHHHHHH
Q psy71 121 LSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRS------PLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDK 194 (218)
Q Consensus 121 l~~~aeCi~i~~~hc~~L~evGLDl~flL~~lLr~------~ie~al~~~~~~i~e~v~~r~~ed~W~~~nl~~~~~~~k 194 (218)
...+..|.+.....++.+.+.|.|.-+.-+..... ..++-..-+.+++.+.++.+ -.+.-+....+.+.
T Consensus 160 ~~~l~~i~~~~~~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~-----g~~~~lH~cG~~~~ 234 (330)
T cd03465 160 HKLLEKCTEFIIRYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKAL-----GGPVIHHNCGDTAP 234 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHc-----CCceEEEECCCchh
Confidence 46667788888899998888899987777643322 25566677788899988742 23455566666668
Q ss_pred HHHHHhhcCcc
Q psy71 195 FLTEFTDAGLT 205 (218)
Q Consensus 195 ~~~e~~~lGl~ 205 (218)
+++.|.++|+.
T Consensus 235 ~~~~l~~~~~d 245 (330)
T cd03465 235 ILELMADLGAD 245 (330)
T ss_pred HHHHHHHhCCC
Confidence 89999999974
No 62
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=23.40 E-value=2.1e+02 Score=18.39 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=16.0
Q ss_pred CHHHHHHHHHHHhhcCc
Q psy71 188 NRQQRDKFLTEFTDAGL 204 (218)
Q Consensus 188 ~~~~~~k~~~e~~~lGl 204 (218)
+++.+.+.+..|.+.|+
T Consensus 38 s~~~v~~~l~~L~~~G~ 54 (66)
T cd07377 38 SRTTVREALRELEAEGL 54 (66)
T ss_pred CHHHHHHHHHHHHHCCC
Confidence 78899999999999999
No 63
>COG5150 Class 2 transcription repressor NC2, beta subunit (Dr1) [Transcription]
Probab=23.26 E-value=33 Score=27.94 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=19.4
Q ss_pred cchhhhhcCCcccchhhhHHHhhC
Q psy71 5 AGNASKDLKVKRITPRHLQLAIRG 28 (218)
Q Consensus 5 ag~~a~~~~~~rItPrhl~lAi~n 28 (218)
|.++|..-.|+.|.|+||.-|..|
T Consensus 54 Ane~ce~EaKKTIa~EHviKALen 77 (148)
T COG5150 54 ANEACEEEAKKTIAYEHVIKALEN 77 (148)
T ss_pred HHHHHHHHHhccccHHHHHHHHHh
Confidence 445566677899999999999987
No 64
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=23.21 E-value=1.7e+02 Score=27.49 Aligned_cols=72 Identities=14% Similarity=0.161 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHhhhhhccCC----cHHH-----HhhhccccHHHHH-HHHHHHHH
Q psy71 100 TREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLD----LRYL-----LDGALRSPLTKTL-KETRDKLS 169 (218)
Q Consensus 100 ~~eve~F~~l~~rqv~~~~~~l~~~aeCi~i~~~hc~~L~evGLD----l~fl-----L~~lLr~~ie~al-~~~~~~i~ 169 (218)
.-++|.=..-|.|||++.-..|+-+..-.+-.+.++ ...+-+ ++|- +++.-|-.||+|| +||.+|+.
T Consensus 274 ~lrieakL~AFerQVI~EL~~LQqIEr~AkeMRasA---~~~~~~s~ykl~YPLsrTPvHKITRADIE~ALRDDYVRRLl 350 (407)
T PF04625_consen 274 DLRIEAKLRAFERQVIAELKMLQQIERMAKEMRASA---TAQNGTSPYKLRYPLSRTPVHKITRADIERALRDDYVRRLL 350 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---cccCCCCCeeecccccCCchhhhhHHHHHHHHHHHHHHHHH
Confidence 446788888999999987333444444444444444 333323 3333 4577888999999 68999996
Q ss_pred HHHhh
Q psy71 170 DTIKL 174 (218)
Q Consensus 170 e~v~~ 174 (218)
..=..
T Consensus 351 ~kEaq 355 (407)
T PF04625_consen 351 HKEAQ 355 (407)
T ss_pred HHHHH
Confidence 55333
No 65
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=23.07 E-value=1.7e+02 Score=26.07 Aligned_cols=75 Identities=17% Similarity=0.201 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhCCC----CcchhhHhHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHhhhhhccCCcHHHH
Q psy71 74 SLMITELQKVAFPS----TGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLL 149 (218)
Q Consensus 74 ~~t~~ef~~~~F~~----~~~~~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~aeCi~i~~~hc~~L~evGLDl~flL 149 (218)
..+++++. .+|.+ ...|+..+..||+.= ...+...+...+++..+.-.+.+.+.++.|+-.|
T Consensus 25 ~~~~kel~-~f~keRa~iEe~Yak~L~kLak~~-------------~~~~~~Gt~~~~~~~~~~e~e~~a~~H~~la~~L 90 (269)
T cd07673 25 QISTKELS-DFIRERATIEEAYSRSMTKLAKSA-------------SNYSQLGTFAPVWDVFKTSTEKLANCHLELVRKL 90 (269)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhh-------------ccCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777 66655 234777788887722 1224556788899999999999999999999988
Q ss_pred hhhccccHHHHHHH
Q psy71 150 DGALRSPLTKTLKE 163 (218)
Q Consensus 150 ~~lLr~~ie~al~~ 163 (218)
...+. .+.+-.++
T Consensus 91 ~~~~~-~l~~~~~~ 103 (269)
T cd07673 91 QELIK-EVQKYGEE 103 (269)
T ss_pred HHHHH-HHHHHHHH
Confidence 87554 36655543
No 66
>COG4294 Uve UV damage repair endonuclease [DNA replication, recombination, and repair]
Probab=22.90 E-value=2.3e+02 Score=26.51 Aligned_cols=134 Identities=15% Similarity=0.190 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHhh------------CCC--Ccc-hhhHhHHHHHHHHHHHHHHHHHh-----------
Q psy71 62 VTSASTVFFTNLSLMIT--ELQKVA------------FPS--TGE-CAAAFVVWATREFNLFVSHVIRE----------- 113 (218)
Q Consensus 62 i~~Ls~v~Ft~I~~t~~--ef~~~~------------F~~--~~~-~~S~~V~Wa~~eve~F~~l~~rq----------- 113 (218)
..+|=.++=+++.++.+ +|. .. ||= -+. -.+.++.-+..|++.-..+++++
T Consensus 61 ~~sL~~l~~~Nl~~l~r~l~~~-~~~~I~lyRlSSsLfPla~h~~~~g~~~l~~~~~eL~evGe~a~~~~~Rl~~HPdQf 139 (347)
T COG4294 61 LESLLQLYKQNLLNLIRLLEYN-HAHGIRLYRLSSSLFPLADHADTKGWYTLEFIQSELEEVGELANKHNHRLTMHPDQF 139 (347)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhcCceEEEecccccccccCccchhHHHHHHHHHHHHHHHHHHHhhCceeeecCCce
Confidence 45677777787777643 444 33 332 111 45778888899999999998887
Q ss_pred -hccCCCCcccHHHHHHHHHHHHhhhhhccCCcHHHHh---hhccccHHHHHH---HHHHHHHHHHhhhhhcCCcccCCC
Q psy71 114 -LFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLD---GALRSPLTKTLK---ETRDKLSDTIKLRCAEDRWKPYNL 186 (218)
Q Consensus 114 -v~~~~~~l~~~aeCi~i~~~hc~~L~evGLDl~flL~---~lLr~~ie~al~---~~~~~i~e~v~~r~~ed~W~~~nl 186 (218)
|++| +.-.+....|+...-|...|.-.||+=+..+. +......++.++ .|-.+|-|+||.|..-|+=. -.
T Consensus 140 ~vl~S-~~~eV~~ssir~layH~r~l~~mgl~~Rs~~~lhlgg~~gGK~~~~eqf~kni~~LP~~vksRl~LENDd--~s 216 (347)
T COG4294 140 TVLNS-PREEVVDSSIRDLAYHYRILDGMGLAERSVWNLHLGGTHGGKKERLEQFIKNIQRLPDSVKSRLTLENDD--KS 216 (347)
T ss_pred EEecC-CchHHHHHHHHHHHHHHHHHhhcCCCcCCceEEEeccccCCchhHHHHHHHHHhhcCHHHHHhheeeccc--cc
Confidence 3344 56678888999999999999999999444433 335666666665 55666778899887653211 11
Q ss_pred CCHHHHHHHHHHH
Q psy71 187 NNRQQRDKFLTEF 199 (218)
Q Consensus 187 ~~~~~~~k~~~e~ 199 (218)
.|.+.+=.++++.
T Consensus 217 Ys~eelL~lCek~ 229 (347)
T COG4294 217 YSTEELLPLCEKL 229 (347)
T ss_pred ccHHHHHHHHHHh
Confidence 3445555555543
No 67
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=22.31 E-value=33 Score=31.65 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=23.0
Q ss_pred ccccchhhhhcCCcccchhhhHHHhhC
Q psy71 2 LELAGNASKDLKVKRITPRHLQLAIRG 28 (218)
Q Consensus 2 Lelag~~a~~~~~~rItPrhl~lAi~n 28 (218)
++-|.+-++..||+++++.||..|++.
T Consensus 37 ~~~A~k~~~hskR~~l~~~Di~~Al~~ 63 (343)
T cd08050 37 IQEAAKFMRHSKRRKLTTSDVNHALRL 63 (343)
T ss_pred HHHHHHHHHHhCCCcCCHHHHHHHHHH
Confidence 456778889999999999999999764
No 68
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases. Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc.
Probab=22.12 E-value=1.2e+02 Score=26.47 Aligned_cols=80 Identities=11% Similarity=0.060 Sum_probs=52.3
Q ss_pred cccHHHHHHHHHHHHhhhhhccCCcHHHHhhhc-------cc-cHHHHHHHHHHHHHHHHhhhhhcCCcccCCCCCHHHH
Q psy71 121 LSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGAL-------RS-PLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQR 192 (218)
Q Consensus 121 l~~~aeCi~i~~~hc~~L~evGLDl~flL~~lL-------r~-~ie~al~~~~~~i~e~v~~r~~ed~W~~~nl~~~~~~ 192 (218)
...+..|.+....+++.+.+.|.|.-+.-+..+ .| ..++-...+.+++.+.++. .-.+.-+.+..+.
T Consensus 136 ~~ll~~i~~~~~~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~-----~~~~~~lH~cg~~ 210 (306)
T cd00465 136 HELIEYLTEFILEYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAA-----GEVPIVHHSCYDA 210 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhh-----cCCceEEEECCCH
Confidence 455667888899999999999999665554322 22 2345455677777776663 1223444555555
Q ss_pred HHHHHHHhhcCcc
Q psy71 193 DKFLTEFTDAGLT 205 (218)
Q Consensus 193 ~k~~~e~~~lGl~ 205 (218)
..++++|.++|..
T Consensus 211 ~~~~~~l~~~~~d 223 (306)
T cd00465 211 ADLLEEMIQLGVD 223 (306)
T ss_pred HHHHHHHHHhCcc
Confidence 7788888888764
No 69
>PF05997 Nop52: Nucleolar protein,Nop52; InterPro: IPR010301 Nop52 is believed to be involved in the generation of 28S rRNA [].; GO: 0006364 rRNA processing, 0030688 preribosome, small subunit precursor
Probab=22.04 E-value=2.8e+02 Score=23.87 Aligned_cols=76 Identities=14% Similarity=0.021 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHhhhhhccCCc----------HHHHhhhccccHHHHHHHHHH
Q psy71 97 VWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDL----------RYLLDGALRSPLTKTLKETRD 166 (218)
Q Consensus 97 ~Wa~~eve~F~~l~~rqv~~~~~~l~~~aeCi~i~~~hc~~L~evGLDl----------~flL~~lLr~~ie~al~~~~~ 166 (218)
.|-.+-++.|..++.+.++.++.. .+..--.+.+--.-+.|..+|-+. ...+..+|.|-++-+-...-+
T Consensus 125 ~w~~~~v~~~~~~l~~~~l~~~~~-~p~Gl~~H~~Di~ldEL~k~~~~~~~~~e~~~~~~~~~~~ll~PF~~~~~~s~~k 203 (217)
T PF05997_consen 125 GWDKELVEEFNEILSETPLNPNDQ-VPNGLRYHFADIFLDELEKVGGSESEDEEEENLPAEPLLLLLEPFVKLLAKSPDK 203 (217)
T ss_pred CCcHHHHHHHHHHHHHccCCCcCC-CchhHHHHHHHHHHHHHHHHhcccccchhcccCCHHHHHHHHHHHHHHHHhCCCH
Confidence 477777999999999998888654 554445555555557777777643 345566666666554444433
Q ss_pred HHHHHHh
Q psy71 167 KLSDTIK 173 (218)
Q Consensus 167 ~i~e~v~ 173 (218)
.+.+.++
T Consensus 204 ~l~~~i~ 210 (217)
T PF05997_consen 204 VLRKRIK 210 (217)
T ss_pred HHHHHHH
Confidence 4444444
No 70
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=21.92 E-value=49 Score=33.58 Aligned_cols=37 Identities=22% Similarity=0.282 Sum_probs=29.9
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 37 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~ 37 (218)
+|+.|-+.|+..+-..|+|+|+.+|+-.+++...+++
T Consensus 8 ~L~~A~~~A~~~~h~~V~~EHLLlaLL~~~~~~~iL~ 44 (731)
T TIGR02639 8 ILDAALEEAKKRRHEFVTLEHILLALLFDSDAIEILE 44 (731)
T ss_pred HHHHHHHHHHHhCCCcCcHHHHHHHHHcCchHHHHHH
Confidence 3567888999999999999999999988766545553
No 71
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=21.24 E-value=2e+02 Score=25.11 Aligned_cols=76 Identities=18% Similarity=0.204 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhCCC----CcchhhHhHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHhhhhhccCCcHH
Q psy71 72 NLSLMITELQKVAFPS----TGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRY 147 (218)
Q Consensus 72 ~I~~t~~ef~~~~F~~----~~~~~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~aeCi~i~~~hc~~L~evGLDl~f 147 (218)
.-..+++++. ..|.+ ...|+..+..||+.- .+.....+...++...+.-.+.+..+...|.-
T Consensus 16 ~g~~~~~el~-~f~keRa~IEe~Yak~L~kLakk~-------------~~~~~~gt~~~~w~~i~~~~e~~a~~H~~l~~ 81 (261)
T cd07648 16 HGQIAVKELA-DFLRERATIEETYSKALNKLAKQA-------------SNSSQLGTFAPLWLVLRVSTEKLSELHLQLVQ 81 (261)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHh-------------cCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777 66655 234777777877742 11233667778999999999999999998888
Q ss_pred HHhhhccccHHHHHH
Q psy71 148 LLDGALRSPLTKTLK 162 (218)
Q Consensus 148 lL~~lLr~~ie~al~ 162 (218)
.|..+. .++.+-++
T Consensus 82 ~L~~~~-~~l~~~~~ 95 (261)
T cd07648 82 KLQELI-KDVQKYGE 95 (261)
T ss_pred HHHHHH-HHHHHHHH
Confidence 886533 45555443
No 72
>PF14512 TM1586_NiRdase: Putative TM nitroreductase; PDB: 1VKW_A.
Probab=20.81 E-value=58 Score=28.31 Aligned_cols=19 Identities=26% Similarity=0.527 Sum_probs=15.3
Q ss_pred HHHHHHHHhhcCcccccccccCCcccC
Q psy71 192 RDKFLTEFTDAGLTSMSSYLTGKFHVG 218 (218)
Q Consensus 192 ~~k~~~e~~~lGl~~~~~y~~~~~~~~ 218 (218)
.+|++-.+..+|| |.||+|
T Consensus 72 gEqlvL~l~~lGL--------gTCWvg 90 (206)
T PF14512_consen 72 GEQLVLYLQSLGL--------GTCWVG 90 (206)
T ss_dssp HHHHHHHHHHTT---------EEEEES
T ss_pred HHHHHHHHHHcCC--------cceeec
Confidence 3688889999999 789987
No 73
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=20.73 E-value=1.2e+02 Score=29.35 Aligned_cols=45 Identities=13% Similarity=0.172 Sum_probs=26.9
Q ss_pred hhCCCCcchhhHhHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHH
Q psy71 83 VAFPSTGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKC 135 (218)
Q Consensus 83 ~~F~~~~~~~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~aeCi~i~~~hc 135 (218)
..||.. .-=+|+||++ .|..+|....-..+ .-.+.+|++.++.+-
T Consensus 166 ~~~P~~---~eHcI~wA~~---~F~~lF~~~~~~~~--~~~~~~c~~~a~~~f 210 (435)
T cd01490 166 KNFPNA---IEHTIQWARD---EFEGLFKQPPENVN--QYLFEDCVRWARLLF 210 (435)
T ss_pred cCCCCC---chHHHHHHHH---HHHHHhccchHHHH--HhhHHHHHHHHHHHH
Confidence 455554 4558999996 46666655543222 122778887776443
No 74
>PF00540 Gag_p17: gag gene protein p17 (matrix protein); InterPro: IPR000071 Retroviral matrix proteins (or major core proteins) are components of envelope-associated capsids, which line the inner surface of virus envelopes and are associated with viral membranes []. Matrix proteins are produced as part of Gag precursor polyproteins. During viral maturation, the Gag polyprotein is cleaved into major structural proteins by the viral protease, yielding the matrix (MA), capsid (CA), nucleocapsid (NC), and some smaller peptides. Gag-derived proteins govern the entire assembly and release of the virus particles, with matrix proteins playing key roles in Gag stability, capsid assembly, transport and budding. Although matrix proteins from different retroviruses appear to perform similar functions and can have similar structural folds, their primary sequences can be very different. This entry represents matrix proteins from immunodeficiency lentiviruses, such as Human immunodeficiency virus (HIV) and Simian immunodeficiency virus (SIV-cpz) []. The structure of the HIV protein consists of 5 alpha helices, a short 3.10 helix and a 3-stranded mixed beta-sheet [].; GO: 0005198 structural molecule activity; PDB: 2JMG_A 1L6N_A 2NV3_A 1ED1_A 1ECW_A 2C7U_C 2H3F_A 1HIW_S 2H3V_A 2H3I_A ....
Probab=20.40 E-value=54 Score=26.95 Aligned_cols=44 Identities=25% Similarity=0.452 Sum_probs=28.2
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHhhhhhcc
Q psy71 90 ECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLG 142 (218)
Q Consensus 90 ~~~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~aeCi~i~~~hc~~L~evG 142 (218)
-|.-.-++||..|+|.|+ +++ .-|.+..-|-+|. +++.-+..-|
T Consensus 27 kY~lKHlVWasrELeRFa-------lnp-~LLeT~EGC~qIl-~qL~P~l~TG 70 (140)
T PF00540_consen 27 KYRLKHLVWASRELERFA-------LNP-GLLETAEGCQQIL-EQLQPLLPTG 70 (140)
T ss_dssp BE-HHHHHHHHHHHHHTT-------SSG-GGGCSHHHHHHHH-HHHGGGCTTS
T ss_pred ceecceeecccccccccc-------ccc-cccchhhhhhcce-eccCCCCcCC
Confidence 367889999999999985 233 4566666666654 4444444444
Done!