Query psy71
Match_columns 218
No_of_seqs 221 out of 340
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 18:09:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy71.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/71hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d2s_A Exocyst complex compone 100.0 1.8E-33 6.3E-38 244.0 7.7 121 32-159 111-233 (235)
2 1f66_C Histone H2A.Z; nucleoso 99.6 2.5E-17 8.4E-22 131.1 0.3 52 1-52 66-117 (128)
3 2f8n_G Core histone macro-H2A. 99.6 6.9E-17 2.4E-21 127.2 1.1 52 1-52 60-112 (120)
4 2nqb_C Histone H2A; nucleosome 99.6 1.4E-16 4.9E-21 125.9 1.1 52 1-52 61-113 (123)
5 1id3_C Histone H2A.1; nucleoso 99.6 1.4E-16 4.9E-21 127.1 1.0 52 1-52 63-115 (131)
6 1tzy_A Histone H2A-IV; histone 99.6 2.1E-16 7.2E-21 125.8 1.1 52 1-52 63-115 (129)
7 2f8n_K Histone H2A type 1; nuc 99.6 4.2E-16 1.5E-20 126.7 0.6 52 1-52 82-134 (149)
8 3ksy_A SOS-1, SON of sevenless 98.4 2.4E-08 8.2E-13 101.6 -0.4 48 1-48 141-188 (1049)
9 1jfi_A Transcription regulator 97.9 1.4E-06 4.6E-11 65.8 -1.0 37 1-37 49-85 (98)
10 4g92_C HAPE; transcription fac 97.5 1.9E-05 6.5E-10 61.5 0.1 34 2-35 80-113 (119)
11 1n1j_B NF-YC; histone-like PAI 97.1 9.2E-05 3.1E-09 55.5 0.8 36 2-37 58-93 (97)
12 2byk_A Chrac-16; nucleosome sl 95.1 0.0044 1.5E-07 49.5 0.4 36 2-37 58-94 (140)
13 1tzy_D Histone H4-VI; histone- 93.1 0.015 5.3E-07 43.7 -0.2 29 1-29 66-94 (103)
14 2yfw_B Histone H4, H4; cell cy 93.0 0.017 5.7E-07 43.6 -0.2 29 1-29 66-94 (103)
15 1ku5_A HPHA, archaeal histon; 88.2 0.1 3.6E-06 36.2 0.3 27 2-28 44-70 (70)
16 1b67_A Protein (histone HMFA); 87.2 0.13 4.4E-06 35.3 0.3 25 4-28 42-66 (68)
17 1f1e_A Histone fold protein; a 80.1 1.6 5.6E-05 35.1 4.0 71 4-81 45-127 (154)
18 1k6k_A ATP-dependent CLP prote 78.2 0.68 2.3E-05 35.1 1.1 36 2-37 10-45 (143)
19 3b0c_W CENP-W, centromere prot 77.6 0.78 2.7E-05 32.2 1.2 23 5-27 46-68 (76)
20 1khy_A CLPB protein; alpha hel 70.7 1.5 5E-05 33.3 1.3 36 2-37 14-51 (148)
21 3v9r_A MHF1, uncharacterized p 68.0 2.9 0.0001 30.7 2.4 31 7-37 58-88 (90)
22 2y1q_A CLPC N-domain, negative 67.4 1.1 3.8E-05 34.1 -0.0 36 2-37 14-51 (150)
23 3dwb_A ECE-1, endothelin-conve 65.5 21 0.00073 34.2 8.5 121 58-191 271-392 (670)
24 3fes_A ATP-dependent CLP endop 62.5 1.1 3.8E-05 34.4 -0.9 37 1-37 15-53 (145)
25 3fh2_A Probable ATP-dependent 62.3 1.9 6.6E-05 33.0 0.5 37 1-37 14-52 (146)
26 2jvw_A Uncharacterized protein 62.1 5.4 0.00018 29.1 2.8 27 83-109 40-71 (88)
27 3fes_A ATP-dependent CLP endop 61.5 1.8 6E-05 33.2 0.1 37 1-37 89-127 (145)
28 1tzy_B Histone H2B; histone-fo 58.7 3.5 0.00012 32.2 1.4 30 5-34 78-109 (126)
29 2nqb_D Histone H2B; nucleosome 58.5 3.6 0.00012 32.0 1.4 30 5-34 75-106 (123)
30 3fh2_A Probable ATP-dependent 57.6 2.6 8.8E-05 32.2 0.4 37 1-37 89-127 (146)
31 4dra_A Centromere protein S; D 56.4 7.3 0.00025 29.8 2.8 31 7-37 73-103 (113)
32 3zri_A CLPB protein, CLPV; cha 55.1 2.6 8.9E-05 33.8 0.1 37 1-37 32-70 (171)
33 3vh5_A CENP-S; histone fold, c 52.3 9.6 0.00033 30.2 3.0 42 7-48 65-109 (140)
34 1n1j_A NF-YB; histone-like PAI 51.4 6 0.0002 28.5 1.5 24 5-28 51-74 (93)
35 1r1h_A Neprilysin; enkephalina 48.9 1.5E+02 0.005 28.3 11.3 113 59-182 295-407 (696)
36 1k6k_A ATP-dependent CLP prote 48.3 4.4 0.00015 30.4 0.4 37 1-37 87-125 (143)
37 3fz5_A Possible 2-hydroxychrom 46.2 99 0.0034 24.2 8.3 91 68-166 64-164 (202)
38 1khy_A CLPB protein; alpha hel 45.2 7.6 0.00026 29.1 1.3 37 1-37 90-127 (148)
39 3b0b_B CENP-S, centromere prot 43.3 16 0.00053 27.5 2.8 31 7-37 65-95 (107)
40 1r6b_X CLPA protein; AAA+, N-t 40.6 9.4 0.00032 36.6 1.5 36 2-37 10-45 (758)
41 3zri_A CLPB protein, CLPV; cha 40.0 6.5 0.00022 31.4 0.2 30 1-30 106-136 (171)
42 2y1q_A CLPC N-domain, negative 38.7 7.3 0.00025 29.4 0.3 30 1-30 87-116 (150)
43 1mij_A Protein prospero; homeo 37.6 22 0.00075 28.2 2.9 99 83-201 29-143 (152)
44 3zuk_A Endopeptidase, peptidas 34.8 2.9E+02 0.01 26.6 11.0 129 59-203 301-430 (699)
45 2lmd_A Prospero homeobox prote 33.8 20 0.00068 29.0 2.1 132 53-201 13-156 (174)
46 2jss_A Chimera of histone H2B. 33.3 15 0.00052 30.0 1.4 29 6-34 46-76 (192)
47 2byk_B Chrac-14; nucleosome sl 32.3 16 0.00053 28.2 1.2 26 5-30 52-77 (128)
48 3gl5_A Putative DSBA oxidoredu 31.2 1.4E+02 0.0049 24.2 7.2 126 67-201 73-213 (239)
49 3huf_A DNA repair and telomere 29.9 29 0.001 30.9 2.8 34 181-215 113-148 (325)
50 1taf_B TFIID TBP associated fa 29.2 13 0.00044 25.9 0.2 23 5-27 47-69 (70)
51 2gol_A Matrix protein P17 (MA) 28.1 18 0.00062 28.3 0.9 35 90-132 29-63 (133)
52 1z7l_A Ubiquitin-activating en 26.9 1.2E+02 0.0042 26.0 6.1 23 83-111 20-42 (276)
53 2in3_A Hypothetical protein; D 26.3 2.2E+02 0.0076 21.8 8.9 124 70-201 65-210 (216)
54 1jfi_B DR1 protein, transcript 25.9 26 0.00088 28.7 1.5 22 6-27 58-79 (179)
55 4fnq_A Alpha-galactosidase AGA 24.9 50 0.0017 32.1 3.6 29 187-218 343-371 (729)
56 3pxg_A Negative regulator of g 24.6 14 0.00048 33.6 -0.3 36 1-36 13-50 (468)
57 1f6v_A DNA transposition prote 24.1 18 0.0006 26.6 0.2 26 2-28 53-78 (91)
58 2eja_A URO-D, UPD, uroporphyri 23.0 45 0.0015 28.7 2.6 79 122-205 172-254 (338)
59 1v54_E Cytochrome C oxidase po 22.6 2.4E+02 0.008 21.2 6.2 42 167-213 66-107 (109)
60 2hue_B Histone H3; mini beta s 22.5 28 0.00095 24.6 1.0 24 5-28 49-72 (77)
61 3hgj_A Chromate reductase; TIM 22.2 1.1E+02 0.0038 26.6 5.1 82 123-205 146-254 (349)
62 1ed1_A GAG polyprotein, SIV MA 22.1 27 0.00093 27.3 0.9 34 90-131 28-61 (135)
63 3pxg_A Negative regulator of g 21.8 18 0.00061 32.9 -0.2 31 1-31 87-117 (468)
64 3b0c_T CENP-T, centromere prot 21.4 25 0.00086 26.3 0.6 27 6-32 49-75 (111)
65 2hue_C Histone H4; mini beta s 20.8 21 0.00071 25.3 0.0 25 5-29 51-75 (84)
66 3t6g_B Breast cancer anti-estr 20.8 3.3E+02 0.011 23.0 7.4 106 58-171 100-210 (229)
67 3pxi_A Negative regulator of g 20.7 19 0.00065 34.7 -0.3 36 1-36 13-50 (758)
68 2dc3_A Cytoglobin; myoglobin, 20.6 3.1E+02 0.011 21.5 10.4 122 63-188 42-181 (193)
69 3f4m_A Tumor necrosis factor, 20.1 3.3E+02 0.011 21.6 8.2 104 60-175 6-111 (161)
No 1
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=99.98 E-value=1.8e-33 Score=243.96 Aligned_cols=121 Identities=19% Similarity=0.314 Sum_probs=108.3
Q ss_pred HhHHHHHHhcCCcccCC-CCcccccCcchhhHHHHHHHHHHHHHHHHHHHHHhhCCC-CcchhhHhHHHHHHHHHHHHHH
Q psy71 32 LDSLIKATIAGGARFGL-YPEVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPS-TGECAAAFVVWATREFNLFVSH 109 (218)
Q Consensus 32 L~~Ll~~tia~~gv~~~-~r~l~~eG~~~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~-~~~~~S~~V~Wa~~eve~F~~l 109 (218)
..-+|+ +++.++.+ +|++.++||++.||++||++||+.|++|+++|+ ++||+ +|.|+|+||+||++|++.|+.+
T Consensus 111 ~~lfL~---~rs~~i~~~~r~l~~~gd~~~Yi~~Ls~i~Fs~I~~t~~~f~-~~F~~~~~~~~S~lV~Wa~~eve~f~~l 186 (235)
T 2d2s_A 111 LDLFLQ---NRSNFIQDLILQIGSVDNPTNYLTQLAVIRFQTIKKTVEDFQ-DIFKELGAKISSILVDWCSDEVDNHFKL 186 (235)
T ss_dssp HHHHHH---HHHHHHHHHHHCC--CCSHHHHHHHHHHHHHHHHHHHHHHHH-HHSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHH-HHhCCCCcccccHHHHHHHHHHHHHHHH
Confidence 345556 67777877 899999999999999999999999999999999 99999 7789999999999999999999
Q ss_pred HHHhhccCCCCcccHHHHHHHHHHHHhhhhhccCCcHHHHhhhccccHHH
Q psy71 110 VIRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTK 159 (218)
Q Consensus 110 ~~rqv~~~~~~l~~~aeCi~i~~~hc~~L~evGLDl~flL~~lLr~~ie~ 159 (218)
|+|||++ ++++++ +||+++++||++|+++||||+|+|+++|+|++++
T Consensus 187 ~~rqv~~-~~~l~~--ecv~i~~~~~~~L~~vGLd~~~~L~~ll~~~~~~ 233 (235)
T 2d2s_A 187 IDKQLLN-DEMLSP--GSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDK 233 (235)
T ss_dssp HHHHTTC----CCH--HHHHHHHHHHHGGGGGTCCCHHHHHHHHHTTGGG
T ss_pred HHHHccC-CccHHH--HHHHHHHHHHHHHHHcCCChHHHHHHHHhhhHhh
Confidence 9999999 566665 9999999999999999999999999999999986
No 2
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.63 E-value=2.5e-17 Score=131.07 Aligned_cols=52 Identities=83% Similarity=1.056 Sum_probs=49.6
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHHHHhcCCcccCCCCcc
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGLYPEV 52 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~~tia~~gv~~~~r~l 52 (218)
|||+|||+|++++++|||||||++||+||+||++||++|||+|||+|+++..
T Consensus 66 IlelAgn~A~~~k~krItprhi~lAI~nDeEL~~Ll~~tia~ggv~P~i~~~ 117 (128)
T 1f66_C 66 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKS 117 (128)
T ss_dssp HHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHCCSEETTCCCCCCCCGG
T ss_pred HHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhhhcceecCCccCCCCCHH
Confidence 6899999999999999999999999999999999999999999999998764
No 3
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.61 E-value=6.9e-17 Score=127.19 Aligned_cols=52 Identities=48% Similarity=0.648 Sum_probs=49.2
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV 52 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l 52 (218)
|||+|||+|++++++|||||||++||+||+||++||+ +|||+|||+|+++..
T Consensus 60 IlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~~Ll~~vtia~ggv~p~i~~~ 112 (120)
T 2f8n_G 60 ILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPE 112 (120)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGG
T ss_pred HHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHHHHhCCceECCCCcCCCcCHH
Confidence 5899999999999999999999999999999999997 799999999997754
No 4
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.59 E-value=1.4e-16 Score=125.88 Aligned_cols=52 Identities=60% Similarity=0.795 Sum_probs=49.2
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV 52 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l 52 (218)
|||+|||+|++++++|||||||++||+||+||++||+ +|||+|||+|+++..
T Consensus 61 IlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~Ll~~vtia~ggvlp~i~~~ 113 (123)
T 2nqb_C 61 VLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAV 113 (123)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGG
T ss_pred HHHHHHHHHHhcCCccccHHHHHHHHhccHHHHHHhcCceeCCCCcCCCccHH
Confidence 5899999999999999999999999999999999997 799999999997754
No 5
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.59 E-value=1.4e-16 Score=127.10 Aligned_cols=52 Identities=54% Similarity=0.749 Sum_probs=49.1
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV 52 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l 52 (218)
|||+|||+|++++++||+||||++||+||+||+.||+ +|||+|||+|+++..
T Consensus 63 IlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~Ll~~vtIa~ggvlP~i~~~ 115 (131)
T 1id3_C 63 ILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQN 115 (131)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHHTTTEEETTCCCCCCCCGG
T ss_pred HHHHHHHHHhhcCCceEcHHHHHHHHhccHHHHHHhcCceecCCccCCCccHH
Confidence 5899999999999999999999999999999999997 799999999997754
No 6
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.58 E-value=2.1e-16 Score=125.82 Aligned_cols=52 Identities=58% Similarity=0.785 Sum_probs=49.1
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV 52 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l 52 (218)
|||+|||+|++++++|||||||++||+||+||++||+ +|||+|||+|+++..
T Consensus 63 IlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~L~~~vtIa~ggvlP~i~~~ 115 (129)
T 1tzy_A 63 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAV 115 (129)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTTTEEETTCCCCCCCCGG
T ss_pred HHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHHHHhCCCeecCCCcCCCCCHH
Confidence 5899999999999999999999999999999999997 799999999997754
No 7
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.55 E-value=4.2e-16 Score=126.70 Aligned_cols=52 Identities=58% Similarity=0.785 Sum_probs=49.1
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH-HHhcCCcccCCCCcc
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGARFGLYPEV 52 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~-~tia~~gv~~~~r~l 52 (218)
|||+|||+|++++++||+||||++||+||+||++||+ +|||+|||+|++...
T Consensus 82 ILelAgn~A~~~krkrItprhI~lAI~nDeEL~~Ll~~vtIa~gGVlP~i~~~ 134 (149)
T 2f8n_K 82 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAV 134 (149)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHTTTEEETTCCCCCCCCGG
T ss_pred HHHHHHHHHHhcCCCcCcHHHHHHHHhccHHHHHHhcCceEcCCCCCCCccHH
Confidence 6899999999999999999999999999999999997 799999999997654
No 8
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=98.42 E-value=2.4e-08 Score=101.63 Aligned_cols=48 Identities=21% Similarity=0.387 Sum_probs=36.2
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHHHHhcCCcccCC
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGARFGL 48 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~~tia~~gv~~~ 48 (218)
|||||||+|++++++||||||+++|++||+||+.||+.....+|++|.
T Consensus 141 ~l~la~~~~~~~~~~~i~p~~~~~ai~~d~eL~~l~~~dee~~~~lp~ 188 (1049)
T 3ksy_A 141 ILKLVGNYVRNIRHYEITKQDIKVAMCADKVLMDMFHQDVEDINILSL 188 (1049)
T ss_dssp HHHHHHHHHHHTTCCBCCHHHHHHHHHHCSSHHHHCC-----------
T ss_pred HHHHHHHHHHHcCCceecCccccccccCCHHHHHHHhhccccccCCCC
Confidence 689999999999999999999999999999999999866667787775
No 9
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=97.86 E-value=1.4e-06 Score=65.85 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=22.2
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 37 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~ 37 (218)
++|+|++.|+++++++|+|+||.+||++|++++.|+.
T Consensus 49 l~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~d 85 (98)
T 1jfi_A 49 LLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKA 85 (98)
T ss_dssp HHHHHHHHHHTC---CBCHHHHHTTCC----------
T ss_pred HHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHh
Confidence 3578999999999999999999999999999999985
No 10
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.45 E-value=1.9e-05 Score=61.51 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=31.1
Q ss_pred ccccchhhhhcCCcccchhhhHHHhhCChhHhHH
Q psy71 2 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSL 35 (218)
Q Consensus 2 Lelag~~a~~~~~~rItPrhl~lAi~nd~eL~~L 35 (218)
++.|++.|+++|+++|+|+||..||++|++++=|
T Consensus 80 ~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 80 TMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred HHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence 5778999999999999999999999999999733
No 11
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.14 E-value=9.2e-05 Score=55.53 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=32.7
Q ss_pred ccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH
Q psy71 2 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 37 (218)
Q Consensus 2 Lelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~ 37 (218)
++.|++.|+++|+++|+|+||..||++|++++-|..
T Consensus 58 ~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~d 93 (97)
T 1n1j_B 58 TLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLID 93 (97)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGTT
T ss_pred HHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHHh
Confidence 467889999999999999999999999999988764
No 12
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=95.11 E-value=0.0044 Score=49.48 Aligned_cols=36 Identities=14% Similarity=0.168 Sum_probs=31.5
Q ss_pred ccccchhh-hhcCCcccchhhhHHHhhCChhHhHHHH
Q psy71 2 LELAGNAS-KDLKVKRITPRHLQLAIRGDEELDSLIK 37 (218)
Q Consensus 2 Lelag~~a-~~~~~~rItPrhl~lAi~nd~eL~~Ll~ 37 (218)
++.|++.| +..|+++|+|+||..||++++.++-|..
T Consensus 58 t~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~d 94 (140)
T 2byk_A 58 AGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQ 94 (140)
T ss_dssp HHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGTT
T ss_pred HHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHhc
Confidence 34578888 8999999999999999999999987773
No 13
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=93.12 E-value=0.015 Score=43.71 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=26.1
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCC
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGD 29 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd 29 (218)
|++.|.+.|++.++++|||+||.+|+++.
T Consensus 66 V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 66 VIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 46778999999999999999999999875
No 14
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=92.98 E-value=0.017 Score=43.56 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=26.0
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCC
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGD 29 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd 29 (218)
|++.|.+.|++.++++|||+||.+|+++.
T Consensus 66 V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 66 VIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 46778899999999999999999999864
No 15
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=88.17 E-value=0.1 Score=36.17 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=22.8
Q ss_pred ccccchhhhhcCCcccchhhhHHHhhC
Q psy71 2 LELAGNASKDLKVKRITPRHLQLAIRG 28 (218)
Q Consensus 2 Lelag~~a~~~~~~rItPrhl~lAi~n 28 (218)
++-|...|++.||+.|+|++|.+|+++
T Consensus 44 ~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 44 AKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp HHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 345667788899999999999999985
No 16
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=87.20 E-value=0.13 Score=35.34 Aligned_cols=25 Identities=24% Similarity=0.165 Sum_probs=21.0
Q ss_pred ccchhhhhcCCcccchhhhHHHhhC
Q psy71 4 LAGNASKDLKVKRITPRHLQLAIRG 28 (218)
Q Consensus 4 lag~~a~~~~~~rItPrhl~lAi~n 28 (218)
-|...|...||+.|+|+||++|++.
T Consensus 42 ~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 42 EAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp HHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred HHHHHHHHcCCCccCHHHHHHHHHh
Confidence 3556678899999999999999864
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=80.07 E-value=1.6 Score=35.06 Aligned_cols=71 Identities=15% Similarity=0.031 Sum_probs=42.4
Q ss_pred ccchhhhhcCCcccchhhhHHHhhC--ChhHhHHHHHHhcCCc-ccCC--CCc-------ccccCcchhhHHHHHHHHHH
Q psy71 4 LAGNASKDLKVKRITPRHLQLAIRG--DEELDSLIKATIAGGA-RFGL--YPE-------VRRDGPALSYVTSASTVFFT 71 (218)
Q Consensus 4 lag~~a~~~~~~rItPrhl~lAi~n--d~eL~~Ll~~tia~~g-v~~~--~r~-------l~~eG~~~~Yi~~Ls~v~Ft 71 (218)
-|.+.|++.|||.|+|+||.+|+.. +++ .+.+.| -+|. ++. -+..++..-++.+.-..|..
T Consensus 45 ~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~-------v~d~~~l~lP~a~V~Ri~k~~g~~RVS~~A~~~l~~~le~f~~ 117 (154)
T 1f1e_A 45 AAKSVLDASGKKTLMEEHLKALADVLMVEG-------VEDYDGELFGRATVRRILKRAGIERASSDAVDLYNKLICRATE 117 (154)
T ss_dssp HHHHHHHTTTCSEECHHHHHHHHHHHTCTT-------STTCCSCCCCHHHHHHHHHHTTCCEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCHHHHHHHHHhccccc-------CCccccccCCccHHHHHHHHcCCccchHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999822 222 111111 1222 222 24555666666666666666
Q ss_pred HHHHHHHHHH
Q psy71 72 NLSLMITELQ 81 (218)
Q Consensus 72 ~I~~t~~ef~ 81 (218)
.|..-+.++.
T Consensus 118 ~I~~~A~~~a 127 (154)
T 1f1e_A 118 ELGEKAAEYA 127 (154)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666655
No 18
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=78.17 E-value=0.68 Score=35.06 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=30.4
Q ss_pred ccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH
Q psy71 2 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 37 (218)
Q Consensus 2 Lelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~ 37 (218)
|+.|-+.|+..+-..|+|+|+.+|+-.+++...+|+
T Consensus 10 l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~iL~ 45 (143)
T 1k6k_A 10 LNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (143)
T ss_dssp HHHHHHHHHHHTBSEECHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHcCchHHHHHH
Confidence 567788899999999999999999998877666654
No 19
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=77.56 E-value=0.78 Score=32.25 Aligned_cols=23 Identities=30% Similarity=0.293 Sum_probs=19.5
Q ss_pred cchhhhhcCCcccchhhhHHHhh
Q psy71 5 AGNASKDLKVKRITPRHLQLAIR 27 (218)
Q Consensus 5 ag~~a~~~~~~rItPrhl~lAi~ 27 (218)
|.+.|+..+++.|+|+||..|++
T Consensus 46 A~~~a~~~~rKTI~~~dI~~A~~ 68 (76)
T 3b0c_W 46 ARTNAFENKSKIIKPEHTIAAAK 68 (76)
T ss_dssp HHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHH
Confidence 34667789999999999999986
No 20
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=70.66 E-value=1.5 Score=33.26 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=28.8
Q ss_pred ccccchhhhhcCCcccchhhhHHHhhCChh--HhHHHH
Q psy71 2 LELAGNASKDLKVKRITPRHLQLAIRGDEE--LDSLIK 37 (218)
Q Consensus 2 Lelag~~a~~~~~~rItPrhl~lAi~nd~e--L~~Ll~ 37 (218)
|+.|-+.|+..+-..|+|+|+.+|+-.+++ ...+|+
T Consensus 14 l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (148)
T 1khy_A 14 LADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLT 51 (148)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHH
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHH
Confidence 567888999999999999999999987663 344443
No 21
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=68.03 E-value=2.9 Score=30.67 Aligned_cols=31 Identities=13% Similarity=0.193 Sum_probs=27.3
Q ss_pred hhhhhcCCcccchhhhHHHhhCChhHhHHHH
Q psy71 7 NASKDLKVKRITPRHLQLAIRGDEELDSLIK 37 (218)
Q Consensus 7 ~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~ 37 (218)
.-|+.-||+.|+|..|.|++|.++.|.+++.
T Consensus 58 ~fA~HAgRkTI~~eDV~L~~Rrn~~L~~~l~ 88 (90)
T 3v9r_A 58 AFARHAGRGVVNKSDLMLYLRKQPDLQERVT 88 (90)
T ss_dssp HHHHHTTCSEECHHHHHHHTTTCHHHHHHHC
T ss_pred HHHHHcCCCccCHHHHHHHHHhChHHHHHhh
Confidence 3467789999999999999999999988874
No 22
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=67.36 E-value=1.1 Score=34.10 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=28.5
Q ss_pred ccccchhhhhcCCcccchhhhHHHhhCChh--HhHHHH
Q psy71 2 LELAGNASKDLKVKRITPRHLQLAIRGDEE--LDSLIK 37 (218)
Q Consensus 2 Lelag~~a~~~~~~rItPrhl~lAi~nd~e--L~~Ll~ 37 (218)
|+.|-+.|+..+-..|+|+|+.+|+-.+++ ...+|+
T Consensus 14 l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~ 51 (150)
T 2y1q_A 14 LALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQ 51 (150)
T ss_dssp HHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHH
Confidence 567888999999999999999999976554 445553
No 23
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation, glycoprotein, hirschsprung diseas hydrolase, membrane, metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens} SCOP: d.92.1.0
Probab=65.46 E-value=21 Score=34.21 Aligned_cols=121 Identities=12% Similarity=0.210 Sum_probs=68.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhhHhHHHHHHHHHHHHHHHHHhhccCC-CCcccHHHHHHHHHHHHh
Q psy71 58 ALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVIRELFVTQ-SSLSTLSPCIAAVSAKCD 136 (218)
Q Consensus 58 ~~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~~~~~~S~~V~Wa~~eve~F~~l~~rqv~~~~-~~l~~~aeCi~i~~~hc~ 136 (218)
.+.|+.+|+.+.=+.=..+...|+ . | .....+..-..++...-..-|.+.+.+.. ....-|..|+..+.....
T Consensus 271 ~~~yl~~l~~ll~~t~~~~l~nYl-~-~----~~i~~~~~~L~~~~~~~~~~f~~~l~G~~~~~~~r~~~C~~~v~~~l~ 344 (670)
T 3dwb_A 271 DKEYLEQISTLINTTDRCLLNNYM-I-W----NLVRKTSSFLDQRFQDADEKFMEVMYGTKKTSLPRWKFCVSDTENNLG 344 (670)
T ss_dssp CHHHHHHHHHHHHHSCHHHHHHHH-H-H----HHHHHHGGGSCHHHHHHHHHHHTTC----------CTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcchHHHHHHH-H-H----HHHHHHHHHhhHHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHH
Confidence 357888888776554445555555 1 1 01122222222333222223555555543 334456789998876533
Q ss_pred hhhhccCCcHHHHhhhccccHHHHHHHHHHHHHHHHhhhhhcCCcccCCCCCHHH
Q psy71 137 QLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQ 191 (218)
Q Consensus 137 ~L~evGLDl~flL~~lLr~~ie~al~~~~~~i~e~v~~r~~ed~W~~~nl~~~~~ 191 (218)
.. +| ...+.+.+.+.-++.+++-.+.|+++.+.++.+-+| |...||+.
T Consensus 345 ~a--~g---~lyv~~~f~~~~k~~~~~mv~~ik~~f~~~l~~~~W--m~~~Tk~~ 392 (670)
T 3dwb_A 345 FA--LG---PMFVKATFAEDSKSIATEIILEIKKAFEESLSTLKW--MDEETRKS 392 (670)
T ss_dssp HH--HH---HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTTCTT--SCHHHHHH
T ss_pred HH--HH---HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCcC--CCHHHHHH
Confidence 21 22 345567788888888999999999999999999999 55555543
No 24
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=62.54 E-value=1.1 Score=34.40 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=29.1
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChh--HhHHHH
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEE--LDSLIK 37 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~e--L~~Ll~ 37 (218)
+|+.|-+.|+..+-..|+|+|+.+|+-.+++ ...+|+
T Consensus 15 ~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 53 (145)
T 3fes_A 15 AIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLS 53 (145)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHH
Confidence 3677889999999999999999999987543 344443
No 25
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=62.30 E-value=1.9 Score=32.96 Aligned_cols=37 Identities=19% Similarity=0.260 Sum_probs=28.8
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCCh--hHhHHHH
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDE--ELDSLIK 37 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~--eL~~Ll~ 37 (218)
+|+.|-+.|+..+-..|+|+|+.+|+-.++ ....+|+
T Consensus 14 ~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~ 52 (146)
T 3fh2_A 14 VIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALE 52 (146)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHH
Confidence 356788899999999999999999997653 3445553
No 26
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=62.09 E-value=5.4 Score=29.14 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=23.0
Q ss_pred hhCCCCcchhhHhH-----HHHHHHHHHHHHH
Q psy71 83 VAFPSTGECAAAFV-----VWATREFNLFVSH 109 (218)
Q Consensus 83 ~~F~~~~~~~S~~V-----~Wa~~eve~F~~l 109 (218)
.||..+|+.-|++- .||++.||.|---
T Consensus 40 ~CF~~~PSikSSLKFLRKTpWAR~KVE~lYL~ 71 (88)
T 2jvw_A 40 NCFKKDPSIKSSLKFLRKTDWARERVENIYLK 71 (88)
T ss_dssp SSTTSSCCHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred ccCCCCCchHHHHHHHhcCHhHHHHHHHHHHH
Confidence 79999999998864 7999999987543
No 27
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=61.46 E-value=1.8 Score=33.21 Aligned_cols=37 Identities=32% Similarity=0.515 Sum_probs=29.8
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChh--HhHHHH
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEE--LDSLIK 37 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~e--L~~Ll~ 37 (218)
|||.|...|+..+...|+++|+.+|+-.+++ ...+|+
T Consensus 89 vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~ 127 (145)
T 3fes_A 89 ILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILN 127 (145)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHH
Confidence 4677888899999999999999999986554 556665
No 28
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=58.74 E-value=3.5 Score=32.15 Aligned_cols=30 Identities=33% Similarity=0.299 Sum_probs=23.7
Q ss_pred cchhhhhcCCcccchhhhHHHhhC--ChhHhH
Q psy71 5 AGNASKDLKVKRITPRHLQLAIRG--DEELDS 34 (218)
Q Consensus 5 ag~~a~~~~~~rItPrhl~lAi~n--d~eL~~ 34 (218)
|+..|+.++++.||+|.||.|++- .-||.+
T Consensus 78 As~La~~nkr~TitsreIqtAvrLlLpGELaK 109 (126)
T 1tzy_B 78 ASRLAHYNKRSTITSREIQTAVRLLLPGELAK 109 (126)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhCcHHHHH
Confidence 456667899999999999999986 555543
No 29
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=58.48 E-value=3.6 Score=31.98 Aligned_cols=30 Identities=33% Similarity=0.299 Sum_probs=23.6
Q ss_pred cchhhhhcCCcccchhhhHHHhhC--ChhHhH
Q psy71 5 AGNASKDLKVKRITPRHLQLAIRG--DEELDS 34 (218)
Q Consensus 5 ag~~a~~~~~~rItPrhl~lAi~n--d~eL~~ 34 (218)
|+..|+.++++.||+|.||.||+- .-||.+
T Consensus 75 As~La~~nkr~TitsreIqtAvrLlLpGELaK 106 (123)
T 2nqb_D 75 ASRLAHYNKRSTITSREIQTAVRLLLPGELAK 106 (123)
T ss_dssp HHHHHHHTTCCEECHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHhcCCCcCCHHHHHHHHHHhCcHHHHH
Confidence 455667899999999999999986 555543
No 30
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=57.55 E-value=2.6 Score=32.23 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=29.6
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCCh--hHhHHHH
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDE--ELDSLIK 37 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~--eL~~Ll~ 37 (218)
|||.|...|+..+...|+++|+.+|+-.++ ....+|+
T Consensus 89 vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~ 127 (146)
T 3fh2_A 89 VLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLV 127 (146)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHH
Confidence 467788889999999999999999997654 4566665
No 31
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=56.37 E-value=7.3 Score=29.77 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=27.7
Q ss_pred hhhhhcCCcccchhhhHHHhhCChhHhHHHH
Q psy71 7 NASKDLKVKRITPRHLQLAIRGDEELDSLIK 37 (218)
Q Consensus 7 ~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~ 37 (218)
.-|+.-||+.|+|..|.|++|.++.|.++++
T Consensus 73 ~fAkHAgRkTI~~eDV~La~Rr~~~L~~~l~ 103 (113)
T 4dra_A 73 MFARHAKRTTINTEDVKLLARRSNSLLKYIT 103 (113)
T ss_dssp HHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHhcCCCccCHHHHHHHHHhCHHHHHHHH
Confidence 3467789999999999999999999998886
No 32
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=55.06 E-value=2.6 Score=33.82 Aligned_cols=37 Identities=16% Similarity=0.160 Sum_probs=29.5
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChh--HhHHHH
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEE--LDSLIK 37 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~e--L~~Ll~ 37 (218)
+|+.|.+.|+..+-..|+|+|+.+|+-.+++ ...+|+
T Consensus 32 aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~ 70 (171)
T 3zri_A 32 ALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLK 70 (171)
T ss_dssp HHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHH
Confidence 3677889999999999999999999988753 444443
No 33
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=52.34 E-value=9.6 Score=30.16 Aligned_cols=42 Identities=19% Similarity=0.151 Sum_probs=30.3
Q ss_pred hhhhhcCCcccchhhhHHHhhCChhHhHHHH---HHhcCCcccCC
Q psy71 7 NASKDLKVKRITPRHLQLAIRGDEELDSLIK---ATIAGGARFGL 48 (218)
Q Consensus 7 ~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~---~tia~~gv~~~ 48 (218)
.-|+.-||+.|+|..|.|++|.++.|.+++. .-++.-+.=++
T Consensus 65 ~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~~~~el~~~~~~~~ 109 (140)
T 3vh5_A 65 MFARHAKRSTITSEDVKLLARRSNSLLKYITQKSDELASSNMEQK 109 (140)
T ss_dssp HHHHHTTCSEECHHHHHHHHTTSHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHcCCCccCHHHHHHHHHhCHHHHHHHHHHHHHHHhhhHHHh
Confidence 3467789999999999999999999998885 34444444443
No 34
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=51.35 E-value=6 Score=28.53 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.1
Q ss_pred cchhhhhcCCcccchhhhHHHhhC
Q psy71 5 AGNASKDLKVKRITPRHLQLAIRG 28 (218)
Q Consensus 5 ag~~a~~~~~~rItPrhl~lAi~n 28 (218)
|...|...||+.|+|.||..|+++
T Consensus 51 A~~~a~~~kRkTI~~~Dv~~Al~~ 74 (93)
T 1n1j_A 51 ASERCHQEKRKTINGEDILFAMST 74 (93)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCccCHHHHHHHHHH
Confidence 445677889999999999999983
No 35
>1r1h_A Neprilysin; enkephalinase, glycoprotein, metalloprotease, hydrolase; HET: NAG BIR; 1.95A {Homo sapiens} SCOP: d.92.1.4 PDB: 1dmt_A* 1r1i_A* 1r1j_A* 1y8j_A* 2qpj_A* 2yb9_A*
Probab=48.92 E-value=1.5e+02 Score=28.33 Aligned_cols=113 Identities=13% Similarity=0.232 Sum_probs=69.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhhHhHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHhhh
Q psy71 59 LSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQL 138 (218)
Q Consensus 59 ~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~~~~~~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~aeCi~i~~~hc~~L 138 (218)
+.|+.+|+.+.=+.=..+...|+ . | .....+..-..+++..-..-|.+.+++......-|..|++.+.......
T Consensus 295 p~yl~~l~~ll~~t~~~~l~nYl-~-~----~~~~~~~~~L~~~~~~~~~~f~~~l~G~~~~~~r~~~Cv~~v~~~l~~a 368 (696)
T 1r1h_A 295 PEYLTKLKPILTKYSARDLQNLM-S-W----RFIMDLVSSLSRTYKESRNAFRKALYGTTSETATWRRCANYVNGNMENA 368 (696)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH-H-H----HHHHHHGGGSCHHHHHTTHHHHHHHHCCSSCCCHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHH-H-H----HHHHHHHhhcCHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHHHHHHH
Confidence 46777777665444344444454 1 0 0111111222223322222255667777666677899999888764331
Q ss_pred hhccCCcHHHHhhhccccHHHHHHHHHHHHHHHHhhhhhcCCcc
Q psy71 139 TSLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWK 182 (218)
Q Consensus 139 ~evGLDl~flL~~lLr~~ie~al~~~~~~i~e~v~~r~~ed~W~ 182 (218)
+| ...+.+.+.+..++.+++-.+.|+++.+.++.+=+|.
T Consensus 369 --~g---~lyv~~~f~~~~k~~~~~mv~~i~~af~~~l~~~~Wm 407 (696)
T 1r1h_A 369 --VG---RLYVEAAFAGESKHVVEDLIAQIREVFIQTLDDLTWM 407 (696)
T ss_dssp --HH---HHHHHHHCCSSHHHHHHHHHHHHHHHHHHHGGGCTTS
T ss_pred --HH---HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 11 2345677888889999999999999999999998994
No 36
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=48.33 E-value=4.4 Score=30.37 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=28.8
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChh--HhHHHH
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEE--LDSLIK 37 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~e--L~~Ll~ 37 (218)
+|+.|...|+..+...|+++|+.+|+-.+++ ...+++
T Consensus 87 ~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~ 125 (143)
T 1k6k_A 87 VLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLR 125 (143)
T ss_dssp HHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHH
Confidence 3567778888889999999999999987654 445554
No 37
>3fz5_A Possible 2-hydroxychromene-2-carboxylate isomeras; 2-hydroxychromene-2-carboxylate ISO structural genomics, PSI-2; HET: MSE GSH PGE; 2.40A {Rhodobacter sphaeroides 2}
Probab=46.24 E-value=99 Score=24.24 Aligned_cols=91 Identities=15% Similarity=0.240 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHHhhC------CCCcchhhHhHHHHHHH----HHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHhh
Q psy71 68 VFFTNLSLMITELQKVAF------PSTGECAAAFVVWATRE----FNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQ 137 (218)
Q Consensus 68 v~Ft~I~~t~~ef~~~~F------~~~~~~~S~~V~Wa~~e----ve~F~~l~~rqv~~~~~~l~~~aeCi~i~~~hc~~ 137 (218)
-....+...++.+. --| +.++.-+..++.||..+ ...|...+-+..+....++..... -.+.
T Consensus 64 ~~~~~~~r~a~~~G-~~f~~~~~~~~~t~~a~r~~~~a~~~g~~~~~~~~~alf~a~~~~g~~i~~~~~-------L~~~ 135 (202)
T 3fz5_A 64 YAQRDWARIARQRG-LTFRPPADHPHVALAATRAFYWIEAQSPDAATAFAQRVFDLYFSDRLDTASPEA-------VSRL 135 (202)
T ss_dssp HHHHHHHHHHHHHT-CCCCCCTTCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTTCCCTTCHHH-------HHTT
T ss_pred HHHHHHHHHHHHhC-CCCCCCCCCCCChHHHHHHHHHHHhhCchHHHHHHHHHHHHHHhcCCCCCCHHH-------HHHH
Confidence 34566777777766 544 33444567788999854 344444444455555444433221 1234
Q ss_pred hhhccCCcHHHHhhhccccHHHHHHHHHH
Q psy71 138 LTSLGLDLRYLLDGALRSPLTKTLKETRD 166 (218)
Q Consensus 138 L~evGLDl~flL~~lLr~~ie~al~~~~~ 166 (218)
+.+.|||-.-....+=.+.+.+.++.+.+
T Consensus 136 a~~~Gld~~~~~~~~~s~~~~~~v~~~~~ 164 (202)
T 3fz5_A 136 GPEVGLEPEALLAGIADPALKETVRKIGE 164 (202)
T ss_dssp HHHHTCCHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHhcCHHHHHHHHHHHH
Confidence 56789996544444444444444444433
No 38
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=45.24 E-value=7.6 Score=29.15 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=27.6
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhC-ChhHhHHHH
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRG-DEELDSLIK 37 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~n-d~eL~~Ll~ 37 (218)
||+.|...|+..+...|+++|+.+|+-. |.....+++
T Consensus 90 vl~~A~~~a~~~~~~~i~~ehlLlall~~~~~~~~~L~ 127 (148)
T 1khy_A 90 VLNLCDKLAQKRGDNFISSELFVLAALESRGTLADILK 127 (148)
T ss_dssp HHHHHHHHHHHHTCSSBCHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeecHHHHHHHHHcCCcHHHHHHH
Confidence 3566778888889999999999999984 323445554
No 39
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=43.31 E-value=16 Score=27.54 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=26.9
Q ss_pred hhhhhcCCcccchhhhHHHhhCChhHhHHHH
Q psy71 7 NASKDLKVKRITPRHLQLAIRGDEELDSLIK 37 (218)
Q Consensus 7 ~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~ 37 (218)
.-|+..||+.|++..|.||+|.++.|-..++
T Consensus 65 ~fA~HAgRkTI~~eDV~La~Rrn~~l~~~l~ 95 (107)
T 3b0b_B 65 MFARHAKRSTITSEDVKLLARRSNSLLKYIT 95 (107)
T ss_dssp HHHHHTTCSEECHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHhcCcCcCCHHHHHHHHHhCHHHHHHHH
Confidence 4567789999999999999999999877765
No 40
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=40.60 E-value=9.4 Score=36.64 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=30.7
Q ss_pred ccccchhhhhcCCcccchhhhHHHhhCChhHhHHHH
Q psy71 2 LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 37 (218)
Q Consensus 2 Lelag~~a~~~~~~rItPrhl~lAi~nd~eL~~Ll~ 37 (218)
|+.|-+.|+..+-..|+|+||.+|+-.|.+...+|+
T Consensus 10 l~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~iL~ 45 (758)
T 1r6b_X 10 LNMAFARAREHRHEFMTVEHLLLALLSNPSAREALE 45 (758)
T ss_dssp HHHHHHHHHHTTBSEECHHHHHHHHTTSHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHcCcHHHHHHH
Confidence 567889999999999999999999998877666653
No 41
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=40.04 E-value=6.5 Score=31.44 Aligned_cols=30 Identities=20% Similarity=0.124 Sum_probs=26.8
Q ss_pred Cccccchhhh-hcCCcccchhhhHHHhhCCh
Q psy71 1 VLELAGNASK-DLKVKRITPRHLQLAIRGDE 30 (218)
Q Consensus 1 vLelag~~a~-~~~~~rItPrhl~lAi~nd~ 30 (218)
||+.|-..|+ ..+...|+++|+.+|+-.|+
T Consensus 106 vL~~A~~~A~l~~gd~~I~teHLLLALl~~~ 136 (171)
T 3zri_A 106 LLQEAWLLSSTELEQAELRSGAIFLAALTRA 136 (171)
T ss_dssp HHHHHHHHHHTTTCCSSBCHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHcCCCEEcHHHHHHHHHhCh
Confidence 4677888999 99999999999999998887
No 42
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=38.74 E-value=7.3 Score=29.38 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=25.1
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCCh
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDE 30 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~ 30 (218)
+|+.|...|+..+...|+++|+.+|+-.++
T Consensus 87 vL~~A~~~A~~~~~~~i~~ehlLlall~~~ 116 (150)
T 2y1q_A 87 VIELSMDEARKLGHSYVGTEHILLGLIREG 116 (150)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCeecHHHHHHHHHhCC
Confidence 356777888888999999999999997654
No 43
>1mij_A Protein prospero; homeodomain, DNA-binding domain, prospero domain, 4-helix bundle, transcription; HET: MSE; 2.05A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1xpx_A
Probab=37.58 E-value=22 Score=28.21 Aligned_cols=99 Identities=16% Similarity=0.329 Sum_probs=46.5
Q ss_pred hhCCC---CcchhhHhHHHHHH-------HHHHHHHHHHHhhccC----CCCcccHH--HHHHHHHHHHhhhhhccCCcH
Q psy71 83 VAFPS---TGECAAAFVVWATR-------EFNLFVSHVIRELFVT----QSSLSTLS--PCIAAVSAKCDQLTSLGLDLR 146 (218)
Q Consensus 83 ~~F~~---~~~~~S~~V~Wa~~-------eve~F~~l~~rqv~~~----~~~l~~~a--eCi~i~~~hc~~L~evGLDl~ 146 (218)
..||| |...+|.+|+|-+. |+|.|+ ||..+. ..++.+-. |-.++.--|-.+=.++-+.-+
T Consensus 29 ~yFpDvkFnr~~TsQLiKWFSNFREFyYIQMEKfA----RQa~seGv~~~~~l~V~rdsEl~r~LN~HYNk~N~~evP~~ 104 (152)
T 1mij_A 29 MYFPDIKFNKNNTAQLVKWFSNFREFYYIQMEKYA----RQAVTEGIKTPDDLLIAGDSELYRVLNLHYNRNNHIEVPQN 104 (152)
T ss_dssp HHCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHC-------------CHHHHHHHHHHCTTCCSCCCHH
T ss_pred HhCCchhhhhhhHHHHHHHHHhhHHHHHHHHHHHH----HHHHHcccCCHHHeeecchHHHHHHHHhhhcccCCCcCcHH
Confidence 77887 44456999999986 455555 555433 23333322 233333344444333333322
Q ss_pred HHHhhhccccHHHHHHHHHHHHHHHHhhhhhcCCcccCCCCCHHHHHHHHHHHhh
Q psy71 147 YLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEFTD 201 (218)
Q Consensus 147 flL~~lLr~~ie~al~~~~~~i~e~v~~r~~ed~W~~~nl~~~~~~~k~~~e~~~ 201 (218)
| +.-+++.|.+-+.-|... +-++-.|. ...=|.+.-|++
T Consensus 105 F------l~v~~~tlrEFf~ai~~G---kD~~~sWK-------K~IYKiI~kLD~ 143 (152)
T 1mij_A 105 F------RFVVESTLREFFRAIQGG---KDTEQSWK-------KSIYKIISRMDD 143 (152)
T ss_dssp H------HHHHHHHHHHHHHHHHTT---GGGSTTTT-------HHHHHHHHTCCC
T ss_pred H------HHHHHHHHHHHHHHHhcC---CcCCchHH-------HHHHHHHHHccc
Confidence 2 233455555544433221 22445664 356666655554
No 44
>3zuk_A Endopeptidase, peptidase family M13; hydrolase-inhibitor complex, pathogenicity, phagosome matura; HET: RDF 211 PGE PG4; 2.60A {Mycobacterium tuberculosis}
Probab=34.77 E-value=2.9e+02 Score=26.62 Aligned_cols=129 Identities=13% Similarity=0.157 Sum_probs=74.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhhHhHHHHHHHHHHH-HHHHHHhhccCCCCcccHHHHHHHHHHHHhh
Q psy71 59 LSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLF-VSHVIRELFVTQSSLSTLSPCIAAVSAKCDQ 137 (218)
Q Consensus 59 ~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~~~~~~S~~V~Wa~~eve~F-~~l~~rqv~~~~~~l~~~aeCi~i~~~hc~~ 137 (218)
+.|+.+|+.+.=+.=..+...|. . | .....+..-..++...- ...+.|-+.+......-|..|+..+......
T Consensus 301 p~yl~~l~~ll~~t~~~~l~nYl-~-~----~~i~~~a~~Ls~~~~~~~~~Fy~~~l~G~~~~~~rwk~Cv~~v~~~l~~ 374 (699)
T 3zuk_A 301 PDYLVTFASLWASVNVEDWKCWA-R-W----RLIRARAPWLTRALVAEDFEFYGRTLTGAQQLRDRWKRGVSLVENLMGD 374 (699)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHH-H-H----HHHHHHGGGSCHHHHHHHHHHHTHHHHCCCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHH-H-H----HHHHHHHHhcCHHHHHHHHHHHHHHhcCCccCccHHHHHHHHHHHHHHH
Confidence 57888888776655555555555 1 1 01111111112222221 1224566666656667788999988876433
Q ss_pred hhhccCCcHHHHhhhccccHHHHHHHHHHHHHHHHhhhhhcCCcccCCCCCHHHHHHHHHHHhhcC
Q psy71 138 LTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAG 203 (218)
Q Consensus 138 L~evGLDl~flL~~lLr~~ie~al~~~~~~i~e~v~~r~~ed~W~~~nl~~~~~~~k~~~e~~~lG 203 (218)
. +| ...+.+.+.+.-++.+++-.+.|+++.+.++.+-+|. +++..++.++-++.+.
T Consensus 375 a--lg---~lyv~~~F~~~~k~~v~~mv~~ik~af~~~l~~~~Wm-----~~~Tk~~A~~Kl~~m~ 430 (699)
T 3zuk_A 375 A--VG---KLYVQRHFPPDAKSRIDTLVDNLQEAYRISISELDWM-----TPQTRQRALAKLNKFT 430 (699)
T ss_dssp H--HH---HHHHHHCC---CCHHHHHHHHHHHHHHHHHHHTCTTS-----CHHHHHHHHHHHHTCE
T ss_pred H--HH---HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHHHhh
Confidence 1 22 3345667777777888888889999999999888895 3444455555555543
No 45
>2lmd_A Prospero homeobox protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transcription; NMR {Homo sapiens}
Probab=33.79 E-value=20 Score=29.00 Aligned_cols=132 Identities=14% Similarity=0.231 Sum_probs=64.5
Q ss_pred cccCcchhhHHHHHHHHHHHHHHHHHHHHHhhCCC---CcchhhHhHHHHHH-------HHHHHHHHHHHhhccCCCCcc
Q psy71 53 RRDGPALSYVTSASTVFFTNLSLMITELQKVAFPS---TGECAAAFVVWATR-------EFNLFVSHVIRELFVTQSSLS 122 (218)
Q Consensus 53 ~~eG~~~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~---~~~~~S~~V~Wa~~-------eve~F~~l~~rqv~~~~~~l~ 122 (218)
..||-++..+.+--..||=+=-=... -+|+.||| |..-+|.+|+|-+. |+|.|+.+-...-.....++.
T Consensus 13 ~~~~Ltp~HLkKAKLMFfytRYPsS~-~LK~yFpDvkFnr~~TsQLiKWFSNFREFyYIQMEKfARQa~seGv~~~~dl~ 91 (174)
T 2lmd_A 13 MQEGLSPNHLKKAKLMFFYTRYPSSN-MLKTYFSDVKFNRCITSQLIKWFSNFREFYYIQMEKYARQAINDGVTSTEELS 91 (174)
T ss_dssp CCCCSCHHHHHHHHHHHTTCCSCHHH-HHHHHTSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCGGGSS
T ss_pred cccCCCHHHHHhhhhheeeecCCcHH-HHHHhCCchhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHccCCCHHHee
Confidence 34666777777766666622111111 12278888 44456999999986 566665443333222223333
Q ss_pred cH--HHHHHHHHHHHhhhhhccCCcHHHHhhhccccHHHHHHHHHHHHHHHHhhhhhcCCcccCCCCCHHHHHHHHHHHh
Q psy71 123 TL--SPCIAAVSAKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEFT 200 (218)
Q Consensus 123 ~~--aeCi~i~~~hc~~L~evGLDl~flL~~lLr~~ie~al~~~~~~i~e~v~~r~~ed~W~~~nl~~~~~~~k~~~e~~ 200 (218)
+- +|-.++.--|-.+=.++-+.-+ ++.-+++.|.+-+.-|... +=++-.|. ...=|.+.-|+
T Consensus 92 V~rdsEL~R~LN~HYNk~N~~evP~~------F~~v~~~tLrEFf~aI~~G---kD~e~sWK-------K~IYKvI~kLD 155 (174)
T 2lmd_A 92 ITRDCELYRALNMHYNKANDFEVPER------FLEVAQITLREFFNAIIAG---KDVDPSWK-------KAIYKVICKLD 155 (174)
T ss_dssp SSCTTHHHHHHHHHHCSSCSTTCCHH------HHHHHHHHHHHHHHHHHHT---CTTSTHHH-------HHHHHHHHTTC
T ss_pred ecchHHHHHHHHhhccccCCCcCcHH------HHHHHHHHHHHHHHHHhcC---CcCCchHH-------HHHHHHHHHcc
Confidence 32 3445555555544333333322 2333455555444333211 11333453 35556665555
Q ss_pred h
Q psy71 201 D 201 (218)
Q Consensus 201 ~ 201 (218)
+
T Consensus 156 ~ 156 (174)
T 2lmd_A 156 S 156 (174)
T ss_dssp S
T ss_pred c
Confidence 4
No 46
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=33.29 E-value=15 Score=30.01 Aligned_cols=29 Identities=28% Similarity=0.267 Sum_probs=22.0
Q ss_pred chhhhhcCCcccchhhhHHHhhC--ChhHhH
Q psy71 6 GNASKDLKVKRITPRHLQLAIRG--DEELDS 34 (218)
Q Consensus 6 g~~a~~~~~~rItPrhl~lAi~n--d~eL~~ 34 (218)
...++.++++.||+|.||.|++- ..||.+
T Consensus 46 ~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak 76 (192)
T 2jss_A 46 SKLAAYNKKSTISAREIQTAVRLILPGELAK 76 (192)
T ss_dssp HHHHHTTCCCSCCHHHHHHHHHHHSCSHHHH
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhcCHHHHH
Confidence 34456689999999999999985 455533
No 47
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=32.32 E-value=16 Score=28.18 Aligned_cols=26 Identities=12% Similarity=0.150 Sum_probs=21.6
Q ss_pred cchhhhhcCCcccchhhhHHHhhCCh
Q psy71 5 AGNASKDLKVKRITPRHLQLAIRGDE 30 (218)
Q Consensus 5 ag~~a~~~~~~rItPrhl~lAi~nd~ 30 (218)
|.+.|+..+|+.|++.||..|+...+
T Consensus 52 A~~~a~~~kRKTI~~~Dv~~Al~~l~ 77 (128)
T 2byk_B 52 STALAHKQNHKTITAKDILQTLTELD 77 (128)
T ss_dssp HHHHHHHTTCSSCCHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCccCHHHHHHHHHHcC
Confidence 34566788999999999999999854
No 48
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Probab=31.18 E-value=1.4e+02 Score=24.22 Aligned_cols=126 Identities=10% Similarity=0.031 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHhhCC------CCcchhhHhHHHHHHH--HHHHHHHHHHhhccCCCCccc-HHHHHHHHHHHHhh
Q psy71 67 TVFFTNLSLMITELQKVAFP------STGECAAAFVVWATRE--FNLFVSHVIRELFVTQSSLST-LSPCIAAVSAKCDQ 137 (218)
Q Consensus 67 ~v~Ft~I~~t~~ef~~~~F~------~~~~~~S~~V~Wa~~e--ve~F~~l~~rqv~~~~~~l~~-~aeCi~i~~~hc~~ 137 (218)
.-.+..+...++.+. --|. .++.-+..++.||..+ ...|...+-+..+....++.. ...-. +.
T Consensus 73 ~~~~~~~~r~a~~~G-l~f~~~~~~~~nt~~a~r~~~~A~~~g~~~~~~~alf~a~~~~g~~i~d~~~~L~-------~~ 144 (239)
T 3gl5_A 73 QAGEDNLGAQAAAEG-LAYRTRDRDHGSTFDLHRLLHLAKERGRHEALLDAFYRGNFADERSVFNDDERLV-------EL 144 (239)
T ss_dssp HHHHHHHHHHHHHTT-CCCCCSSCEECCCHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCSSCCSSCHHHHH-------HH
T ss_pred HHHHHHHHHHHHHcC-CCccCCCCCCCChHHHHHHHHHHHhhCcHHHHHHHHHHHHHhcCCCCCCHHHHHH-------HH
Confidence 344577777788776 5443 3444567888999854 334444444445555444433 22222 23
Q ss_pred hhhccCCcHHHHhhhcc-ccHHHHHHHHHHHHHHHHhh-----hhhcCCcccCCCCCHHHHHHHHHHHhh
Q psy71 138 LTSLGLDLRYLLDGALR-SPLTKTLKETRDKLSDTIKL-----RCAEDRWKPYNLNNRQQRDKFLTEFTD 201 (218)
Q Consensus 138 L~evGLDl~flL~~lLr-~~ie~al~~~~~~i~e~v~~-----r~~ed~W~~~nl~~~~~~~k~~~e~~~ 201 (218)
+.+.|||-.-....+=. +.+.++++.+.+...+. .. ..-++++.-.-.++.+.+.+.+++.-.
T Consensus 145 a~~~Gld~~~~~~~l~s~~~~~~~v~~~~~~a~~~-Gv~GvPtfvv~g~~~v~Ga~~~e~~~~~i~~~~~ 213 (239)
T 3gl5_A 145 AVGAGLDAEEVRAVLADPAAYADEVRADEREAAQL-GATGVPFFVLDRAYGVSGAQPAEVFTQALTQAWG 213 (239)
T ss_dssp HHHTTCCHHHHHHHHHCTTTTHHHHHHHHHHHHHT-TCCSSSEEEETTTEEEESSCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHcCcHhHHHHHHHHHHHHHHC-CCCeeCeEEECCcEeecCCCCHHHHHHHHHHHHh
Confidence 46789997766666666 77888887776654332 10 112355554556888888888887755
No 49
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=29.86 E-value=29 Score=30.95 Aligned_cols=34 Identities=9% Similarity=0.241 Sum_probs=29.2
Q ss_pred cccCCC--CCHHHHHHHHHHHhhcCcccccccccCCc
Q psy71 181 WKPYNL--NNRQQRDKFLTEFTDAGLTSMSSYLTGKF 215 (218)
Q Consensus 181 W~~~nl--~~~~~~~k~~~e~~~lGl~~~~~y~~~~~ 215 (218)
|+|+.+ .+++.+++|-+.+..||+.-. +|..++|
T Consensus 113 W~P~Vl~~Sske~~~~L~~~L~~LGik~v-~~~~det 148 (325)
T 3huf_A 113 WRSMCIQFDNPEMLSQWASNLNLLGIPTG-LRDSDAT 148 (325)
T ss_dssp ECCCCEEESCHHHHHHHHHHHHTTTCCEE-SSCCTTC
T ss_pred EeeeEEEecCHHHHHHHHHHHHHcCCEEE-EccCCCE
Confidence 999766 688888899999999999866 9977766
No 50
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=29.17 E-value=13 Score=25.92 Aligned_cols=23 Identities=13% Similarity=0.380 Sum_probs=19.8
Q ss_pred cchhhhhcCCcccchhhhHHHhh
Q psy71 5 AGNASKDLKVKRITPRHLQLAIR 27 (218)
Q Consensus 5 ag~~a~~~~~~rItPrhl~lAi~ 27 (218)
|.+-++..||+++|+.+|..|++
T Consensus 47 A~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 47 AAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHcCCCeecHHHHHHHHc
Confidence 45667889999999999999975
No 51
>2gol_A Matrix protein P17 (MA); viral maturation, immature, GAG, HIV-1, viral protein; 2.20A {Human immunodeficiency virus 1} SCOP: a.61.1.1 PDB: 1hiw_A 2hmx_A 2h3f_A 2h3i_A* 2h3q_A* 2h3v_A* 2h3z_A* 1uph_A* 2nv3_A* 2jmg_A* 1tam_A
Probab=28.10 E-value=18 Score=28.31 Aligned_cols=35 Identities=26% Similarity=0.473 Sum_probs=24.8
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHH
Q psy71 90 ECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVS 132 (218)
Q Consensus 90 ~~~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~aeCi~i~~ 132 (218)
-|.---++||+.|+|.|+ +++ +=|.+..-|-+|..
T Consensus 29 kY~lKHlVWAsrELeRFa-------lnp-gLLET~eGC~qIl~ 63 (133)
T 2gol_A 29 QYKLKHIVWASRELERFA-------VNP-GLLETSEGCRQILG 63 (133)
T ss_dssp BCCHHHHHHHHHHHHHTT-------BCG-GGGGSHHHHHHHHH
T ss_pred ccccccchhhhhHHHHhc-------cCc-chhhhHHHHHHHHH
Confidence 366778999999999985 344 45666666766653
No 52
>1z7l_A Ubiquitin-activating enzyme E1 1; SCCH, second catalytic cysteine half-domain, ligase; HET: TBR; 2.80A {Mus musculus}
Probab=26.89 E-value=1.2e+02 Score=26.00 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=14.6
Q ss_pred hhCCCCcchhhHhHHHHHHHHHHHHHHHH
Q psy71 83 VAFPSTGECAAAFVVWATREFNLFVSHVI 111 (218)
Q Consensus 83 ~~F~~~~~~~S~~V~Wa~~eve~F~~l~~ 111 (218)
..||.. .-=+|+||++. |..+|.
T Consensus 20 rsfP~~---i~HcI~WAr~l---Fe~lF~ 42 (276)
T 1z7l_A 20 KNFPNA---IEHTLQWARDE---FEGLFK 42 (276)
T ss_dssp HTCCCS---HHHHHHHHHHH---HHHHHT
T ss_pred CCCCCC---hhHHHHHHHHH---HHHHHc
Confidence 345544 56689999974 555554
No 53
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=26.35 E-value=2.2e+02 Score=21.84 Aligned_cols=124 Identities=10% Similarity=0.035 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhhCC----------CCcchhhHhHHHHHHH----HHHHHHHHHHhhccCCCCcccHHHHHHHHHHHH
Q psy71 70 FTNLSLMITELQKVAFP----------STGECAAAFVVWATRE----FNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKC 135 (218)
Q Consensus 70 Ft~I~~t~~ef~~~~F~----------~~~~~~S~~V~Wa~~e----ve~F~~l~~rqv~~~~~~l~~~aeCi~i~~~hc 135 (218)
...+...++.+. .-|+ .+...+...+.||..+ ...|...+-+..+....++.....-.
T Consensus 65 ~~~~~r~a~~~g-~~~~~~~~~~~~~~~~s~~a~r~~~~a~~~~~~~~~~~~~~lf~a~~~~~~~~~~~~~l~------- 136 (216)
T 2in3_A 65 LHHWHSVHITTG-QPFTFENALPEGFIYDTEPACRGVVSVSLIEPEKVFPFFAAIQRAFYVGQEDVAQLAILK------- 136 (216)
T ss_dssp HHHHHHHHHHHC-CCCCCTTCSCTTCBCCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHTTCCCTTSHHHHH-------
T ss_pred HHHHHHHHHHHC-CccChHHHccCCcccCcHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhcCCCCCCHHHHH-------
Confidence 344556666555 4443 3334467788999765 33454444444454444443322212
Q ss_pred hhhhhccCCcHHHHhhhccccHHHHHHHHHHHHHHH----Hhhhhh--cCCc--ccCCCCCHHHHHHHHHHHhh
Q psy71 136 DQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDT----IKLRCA--EDRW--KPYNLNNRQQRDKFLTEFTD 201 (218)
Q Consensus 136 ~~L~evGLDl~flL~~lLr~~ie~al~~~~~~i~e~----v~~r~~--ed~W--~~~nl~~~~~~~k~~~e~~~ 201 (218)
+...+.|||-.-....+-.+.+.+.++.+.+...+. +=...- +.++ ......+.+.+.+++++.-.
T Consensus 137 ~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~g~Pt~~i~~~G~~~~~~~G~~~~~~l~~~l~~~~~ 210 (216)
T 2in3_A 137 KLAVDLGIPESRFTPVFQSDEAKQRTLAGFQRVAQWGISGFPALVVESGTDRYLITTGYRPIEALRQLLDTWLQ 210 (216)
T ss_dssp HHHHHTTCCHHHHHHHHHSHHHHHHHHHHHHHHHHTTCCSSSEEEEEETTEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccceEEEEECCEEEEeccCCCCHHHHHHHHHHHHH
Confidence 224568999766655555666677776665554332 000111 3445 33445778888888877543
No 54
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=25.87 E-value=26 Score=28.69 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=19.1
Q ss_pred chhhhhcCCcccchhhhHHHhh
Q psy71 6 GNASKDLKVKRITPRHLQLAIR 27 (218)
Q Consensus 6 g~~a~~~~~~rItPrhl~lAi~ 27 (218)
.+.|+..+|+.|+|.||..|+.
T Consensus 58 ~e~a~~~~RKTI~~eDVl~Al~ 79 (179)
T 1jfi_B 58 NEICNKSEKKTISPEHVIQALE 79 (179)
T ss_dssp HHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHcCCCcCCHHHHHHHHH
Confidence 3557778999999999999998
No 55
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*
Probab=24.89 E-value=50 Score=32.14 Aligned_cols=29 Identities=10% Similarity=0.145 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHhhcCcccccccccCCcccC
Q psy71 187 NNRQQRDKFLTEFTDAGLTSMSSYLTGKFHVG 218 (218)
Q Consensus 187 ~~~~~~~k~~~e~~~lGl~~~~~y~~~~~~~~ 218 (218)
-|++.+.++++.|.++|+ +-++-||||+|
T Consensus 343 ~~e~~i~~~ad~aa~lG~---e~fviDDGWf~ 371 (729)
T 4fnq_A 343 FNEEKLVNIAKTEAELGI---ELFVLDDGWFG 371 (729)
T ss_dssp CCHHHHHHHHHHHHHHTC---CEEEECSCCBT
T ss_pred CCHHHHHHHHHHHHhcCc---cEEEEcceeec
Confidence 589999999999999998 46889999985
No 56
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=24.58 E-value=14 Score=33.61 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=28.6
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCCh--hHhHHH
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDE--ELDSLI 36 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~--eL~~Ll 36 (218)
+|+.|-+.|+..+-..|+|+|+.+|+-.++ ....+|
T Consensus 13 al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL 50 (468)
T 3pxg_A 13 VLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (468)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 367788899999999999999999997653 344454
No 57
>1f6v_A DNA transposition protein; MU phage, recombination, ATPase, DNA binding, high salt, solution structure, DNA binding protein; HET: DNA; NMR {Enterobacteria phage MU} SCOP: a.49.1.1
Probab=24.06 E-value=18 Score=26.63 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=21.7
Q ss_pred ccccchhhhhcCCcccchhhhHHHhhC
Q psy71 2 LELAGNASKDLKVKRITPRHLQLAIRG 28 (218)
Q Consensus 2 Lelag~~a~~~~~~rItPrhl~lAi~n 28 (218)
|.||+..|+-.+.. |++.||..|-++
T Consensus 53 LrLA~m~A~G~g~~-i~~~~I~~A~~e 78 (91)
T 1f6v_A 53 LRLAAMTAHGKGER-VNEDYLRQAFRE 78 (91)
T ss_dssp HGGGTCTTCTTSCC-SSHHHHHHHHTS
T ss_pred HHHHHHHhccCCCc-CCHHHHHHHHHH
Confidence 56888888776666 999999999886
No 58
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}
Probab=23.02 E-value=45 Score=28.66 Aligned_cols=79 Identities=15% Similarity=0.056 Sum_probs=58.7
Q ss_pred ccHHHHHHHHHHHHhhhhhccCCcHHHHh---hhcccc-HHHHHHHHHHHHHHHHhhhhhcCCcccCCCCCHHHHHHHHH
Q psy71 122 STLSPCIAAVSAKCDQLTSLGLDLRYLLD---GALRSP-LTKTLKETRDKLSDTIKLRCAEDRWKPYNLNNRQQRDKFLT 197 (218)
Q Consensus 122 ~~~aeCi~i~~~hc~~L~evGLDl~flL~---~lLr~~-ie~al~~~~~~i~e~v~~r~~ed~W~~~nl~~~~~~~k~~~ 197 (218)
..+..+.+...+.++.+.+.|.|.-...+ .+|+|. .++-..-+.++|.+.++.+ . ..|+-...+.+ ..+++
T Consensus 172 ~ll~~i~~~~~~~~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~--~--g~~~i~~~~g~-~~~l~ 246 (338)
T 2eja_A 172 RLMDILTETVLAYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDF--S--DTPVIYFFRGS-SSFID 246 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHH--C--CCCEEEEESSH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhc--C--CCCEEEEcCCc-HHHHH
Confidence 45666777777888777788998655544 357775 6777789999999999864 1 24566666666 88999
Q ss_pred HHhhcCcc
Q psy71 198 EFTDAGLT 205 (218)
Q Consensus 198 e~~~lGl~ 205 (218)
+|.++|..
T Consensus 247 ~l~~~g~d 254 (338)
T 2eja_A 247 LAVDYRAD 254 (338)
T ss_dssp HHTTSCCS
T ss_pred HHHHcCCC
Confidence 99999985
No 59
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=22.56 E-value=2.4e+02 Score=21.22 Aligned_cols=42 Identities=5% Similarity=0.090 Sum_probs=29.4
Q ss_pred HHHHHHhhhhhcCCcccCCCCCHHHHHHHHHHHhhcCcccccccccC
Q psy71 167 KLSDTIKLRCAEDRWKPYNLNNRQQRDKFLTEFTDAGLTSMSSYLTG 213 (218)
Q Consensus 167 ~i~e~v~~r~~ed~W~~~nl~~~~~~~k~~~e~~~lGl~~~~~y~~~ 213 (218)
|+.|++|..+...++. =+.=++.+.--|++|||+..+..-++
T Consensus 66 R~lE~iK~K~~~~~~i-----Y~~~lqElkPtl~ELGI~t~EeLg~d 107 (109)
T 1v54_E 66 RILEVVKDKAGPHKEI-----YPYVIQELRPTLNELGISTPEELGLD 107 (109)
T ss_dssp HHHHHHHHHTTTCTTH-----HHHHHHHHHHHHHHHTCCCTTTTTTT
T ss_pred HHHHHHHHHhcCchhh-----HHHHHHHHhhHHHHhCCCCHHHhCCC
Confidence 6778899877665441 13456778888999999877666544
No 60
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=22.53 E-value=28 Score=24.63 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=19.2
Q ss_pred cchhhhhcCCcccchhhhHHHhhC
Q psy71 5 AGNASKDLKVKRITPRHLQLAIRG 28 (218)
Q Consensus 5 ag~~a~~~~~~rItPrhl~lAi~n 28 (218)
+..-|...|++.|.|+.++||.+-
T Consensus 49 a~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 49 TNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp HHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCccCcHhhHHHHHHH
Confidence 334567789999999999999764
No 61
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=22.24 E-value=1.1e+02 Score=26.62 Aligned_cols=82 Identities=12% Similarity=0.213 Sum_probs=48.5
Q ss_pred cHHHHHHHHHHHHhhhhhccCCc-------HHHHhhhccccHHH-------HHHHHH---HHHHHHHhhhh---------
Q psy71 123 TLSPCIAAVSAKCDQLTSLGLDL-------RYLLDGALRSPLTK-------TLKETR---DKLSDTIKLRC--------- 176 (218)
Q Consensus 123 ~~aeCi~i~~~hc~~L~evGLDl-------~flL~~lLr~~ie~-------al~~~~---~~i~e~v~~r~--------- 176 (218)
-+.+.++-=..-+....+-|.|. .|+++.+|+|...+ .+++.. ..++++|+..+
T Consensus 146 eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vR 225 (349)
T 3hgj_A 146 GMERILQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVR 225 (349)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 34444444444455677788887 79999999997421 122211 22334444333
Q ss_pred -hcCCcccCCCCCHHHHHHHHHHHhhcCcc
Q psy71 177 -AEDRWKPYNLNNRQQRDKFLTEFTDAGLT 205 (218)
Q Consensus 177 -~ed~W~~~nl~~~~~~~k~~~e~~~lGl~ 205 (218)
+-++|.+- -.+.+...++++++.+.|+.
T Consensus 226 ls~~~~~~~-g~~~~~~~~la~~L~~~Gvd 254 (349)
T 3hgj_A 226 VSATDWGEG-GWSLEDTLAFARRLKELGVD 254 (349)
T ss_dssp EESCCCSTT-SCCHHHHHHHHHHHHHTTCC
T ss_pred eccccccCC-CCCHHHHHHHHHHHHHcCCC
Confidence 33344321 24667788999999999984
No 62
>1ed1_A GAG polyprotein, SIV MA; trimeric association, viral protein; 2.10A {Simian immunodeficiency virus - mac} SCOP: a.61.1.1 PDB: 1ecw_A 2k4e_A 2k4h_A* 2k4i_A*
Probab=22.15 E-value=27 Score=27.34 Aligned_cols=34 Identities=26% Similarity=0.446 Sum_probs=23.6
Q ss_pred chhhHhHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHH
Q psy71 90 ECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAV 131 (218)
Q Consensus 90 ~~~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~aeCi~i~ 131 (218)
-|.-.-++||+.|+|.|+ +++ .-|.+..-|-+|.
T Consensus 28 kY~lKHlvWasrELeRFa-------lnp-~LLeT~eGC~qIl 61 (135)
T 1ed1_A 28 KYMLKHVVWAANELDRFG-------LAE-SLLENKEGCQKIL 61 (135)
T ss_dssp BCCHHHHHHHHHHHHHTT-------CCG-GGGGSHHHHHHHH
T ss_pred cccchhhhhhhhHHHHhh-------ccc-cchhhHHHHHHHH
Confidence 466788999999999985 233 4456666666654
No 63
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=21.83 E-value=18 Score=32.92 Aligned_cols=31 Identities=23% Similarity=0.390 Sum_probs=26.8
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCChh
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDEE 31 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~e 31 (218)
||+.|-..|+..+...|.+.||.+|+-.+++
T Consensus 87 vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~ 117 (468)
T 3pxg_A 87 VIELSMDEARKLGHSYVGTEHILLGLIREGE 117 (468)
T ss_dssp HHHHHHHHHHTTTCSSBCHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCCeecHHHHHHHHHhccc
Confidence 4677888899999999999999999987654
No 64
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=21.42 E-value=25 Score=26.31 Aligned_cols=27 Identities=15% Similarity=0.144 Sum_probs=21.9
Q ss_pred chhhhhcCCcccchhhhHHHhhCChhH
Q psy71 6 GNASKDLKVKRITPRHLQLAIRGDEEL 32 (218)
Q Consensus 6 g~~a~~~~~~rItPrhl~lAi~nd~eL 32 (218)
...|+..|++.|++..|.+|++....+
T Consensus 49 ~~~A~HA~RKTV~~eDV~lalrr~g~~ 75 (111)
T 3b0c_T 49 EAYSQHAGRKTVEMADVELLMRRQGLV 75 (111)
T ss_dssp HHHHHHTTCSEECHHHHHHHHHHTTSS
T ss_pred HHHHHHcCCCcCCHHHHHHHHHHCCCc
Confidence 345677899999999999999985543
No 65
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=20.85 E-value=21 Score=25.25 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=20.8
Q ss_pred cchhhhhcCCcccchhhhHHHhhCC
Q psy71 5 AGNASKDLKVKRITPRHLQLAIRGD 29 (218)
Q Consensus 5 ag~~a~~~~~~rItPrhl~lAi~nd 29 (218)
|...++..|++.||+..|.+|++..
T Consensus 51 A~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 51 AVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4456778899999999999999864
No 66
>3t6g_B Breast cancer anti-estrogen resistance protein 1; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens}
Probab=20.75 E-value=3.3e+02 Score=22.98 Aligned_cols=106 Identities=10% Similarity=0.131 Sum_probs=68.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhCCC--Ccchh---hHhHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHH
Q psy71 58 ALSYVTSASTVFFTNLSLMITELQKVAFPS--TGECA---AAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVS 132 (218)
Q Consensus 58 ~~~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~--~~~~~---S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~aeCi~i~~ 132 (218)
+..|...=|..+|..+.++..-|. .+-.. +|..+ |-||.=+-+.+-...+.+.|++-+. .+-.+-...+-
T Consensus 100 LL~fys~Qc~s~~~~L~~AIdaF~-~sv~~nQPP~iFVahsK~VIlsAHKLVfIGDTL~r~~~~~----dvr~~Vl~~sn 174 (229)
T 3t6g_B 100 LLLFYLEQCEANLTTLTNAVDAFF-TAVATNQPPKIFVAHSKFVILSAHKLVFIGDTLSRQAKAA----DVRSQVTHYSN 174 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCchhhHhcCCEEEEEeeeeeeecchHHHhhccH----HHHHHHHHHHH
Confidence 367888889999999999999999 77733 35555 8888888888888889999998665 22234444444
Q ss_pred HHHhhhhhccCCcHHHHhhhccccHHHHHHHHHHHHHHH
Q psy71 133 AKCDQLTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDT 171 (218)
Q Consensus 133 ~hc~~L~evGLDl~flL~~lLr~~ie~al~~~~~~i~e~ 171 (218)
.-|+.|+..=+. -.-..+--|+ -.|+++-.+++.|-
T Consensus 175 ~Lc~~LK~~VlA--TK~AAl~YPS-~~AlQeMvd~v~eL 210 (229)
T 3t6g_B 175 LLCDLLRGIVAT--TKAAALQYPS-PSAAQDMVERVKEL 210 (229)
T ss_dssp HHHHHHHHHHHH--HHHHHHTCSC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HHHHHHhCCC-HHHHHHHHHHHHHH
Confidence 555666553322 2222333333 34455544444443
No 67
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=20.65 E-value=19 Score=34.66 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=28.5
Q ss_pred CccccchhhhhcCCcccchhhhHHHhhCCh--hHhHHH
Q psy71 1 VLELAGNASKDLKVKRITPRHLQLAIRGDE--ELDSLI 36 (218)
Q Consensus 1 vLelag~~a~~~~~~rItPrhl~lAi~nd~--eL~~Ll 36 (218)
+|+.|-+.|+..+-..|+|+|+.+|+-.++ ....+|
T Consensus 13 ~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL 50 (758)
T 3pxi_A 13 VLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKAL 50 (758)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHH
Confidence 357788999999999999999999997653 344444
No 68
>2dc3_A Cytoglobin; myoglobin, heme, oxygen transport, oxygen storage, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: HEM; 1.68A {Homo sapiens} PDB: 1v5h_A* 3ag0_A* 1urv_A* 1umo_A* 1ury_A* 1ut0_A* 1ux9_A*
Probab=20.59 E-value=3.1e+02 Score=21.49 Aligned_cols=122 Identities=7% Similarity=-0.000 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCcch-------hhHhHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHH
Q psy71 63 TSASTVFFTNLSLMITELQKVAFPSTGEC-------AAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKC 135 (218)
Q Consensus 63 ~~Ls~v~Ft~I~~t~~ef~~~~F~~~~~~-------~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~aeCi~i~~~hc 135 (218)
.+++..+|..+=...=+.. ..|+.-..+ .|.-+ +.+-..++.-+..=+-.-+..-......-+++..|+
T Consensus 42 ~~~g~~~y~rlF~~~P~~k-~~F~~f~d~~~~~~l~~n~~~---~~h~~~v~~al~~~v~~Ldd~~~l~~~l~~L~~~H~ 117 (193)
T 2dc3_A 42 EDVGVAILVRFFVNFPSAK-QYFSQFKHMEDPLEMERSPQL---RKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHA 117 (193)
T ss_dssp HHHHHHHHHHHHHHCGGGG-GGCTTTTTCCCHHHHTTCHHH---HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCHHHH-HHHHhccCCCcHHHHhcCHHH---HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3666777777766666666 677641111 11111 233333333333333222111112335556677777
Q ss_pred hh-------hhhccCCcHHHH----hhhccccHHHHHHHHHHHHHHHHhhhhhcCCcccCCCCC
Q psy71 136 DQ-------LTSLGLDLRYLL----DGALRSPLTKTLKETRDKLSDTIKLRCAEDRWKPYNLNN 188 (218)
Q Consensus 136 ~~-------L~evGLDl~flL----~~lLr~~ie~al~~~~~~i~e~v~~r~~ed~W~~~nl~~ 188 (218)
.. ..-+|=-|-..| ..-+-|.+++|-......+.+.++....+..|+..+.++
T Consensus 118 ~~~gV~p~~f~~~~~~Ll~~l~~~lg~~~t~e~~~AW~k~~~~va~~l~~~y~~~~~~~~~~~~ 181 (193)
T 2dc3_A 118 LKHKVEPVYFKILSGVILEVVAEEFASDFPPETQRAWAKLRGLIYSHVTAAYKEVGWVQQVPNA 181 (193)
T ss_dssp HTSCCCHHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSCT
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccc
Confidence 31 222222222222 234567788888888999999999888889999877655
No 69
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=20.13 E-value=3.3e+02 Score=21.65 Aligned_cols=104 Identities=14% Similarity=0.075 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhhHhHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHhh--
Q psy71 60 SYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHVIRELFVTQSSLSTLSPCIAAVSAKCDQ-- 137 (218)
Q Consensus 60 ~Yi~~Ls~v~Ft~I~~t~~ef~~~~F~~~~~~~S~~V~Wa~~eve~F~~l~~rqv~~~~~~l~~~aeCi~i~~~hc~~-- 137 (218)
.+|-.-|.=.+..+...+++|. .+..-+..+++=..+=+-+-.-+++.+-|+. ..+..+.+ .+--..|..|
T Consensus 6 ~fIDdtsselLD~lyrl~K~~t-----~nkkeA~kv~KniIKi~vKigvl~rn~qf~~-eEl~~~~~-fr~k~~~~amt~ 78 (161)
T 3f4m_A 6 LFIDETSSEVLDELYRVSKEYT-----HSRPQAQRVIKDLIKVAIKVAVLHRNGSFGP-SELALATR-FRQKLRQGAMTA 78 (161)
T ss_dssp --CCHHHHHHHHHHHHHHHHHH-----SCHHHHHHHHHHHHHHHHHHHHHHHTTCCCH-HHHHHHHH-HHHHHHHHHHHH
T ss_pred HhcCccHHHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHHHHHHhheeeecCCCCH-HHHHHHHH-HHHHHHHHHHHH
Confidence 4555666677888888899988 3444667777777777778888888888887 66666554 4444444443
Q ss_pred hhhccCCcHHHHhhhccccHHHHHHHHHHHHHHHHhhh
Q psy71 138 LTSLGLDLRYLLDGALRSPLTKTLKETRDKLSDTIKLR 175 (218)
Q Consensus 138 L~evGLDl~flL~~lLr~~ie~al~~~~~~i~e~v~~r 175 (218)
+.=.|+||+|=..- +.++|.+.++.+...++.+
T Consensus 79 iSF~eVdfTfD~~~-----L~~~L~ec~~lL~~lv~~H 111 (161)
T 3f4m_A 79 LSFGEVDFTFEAAV-----LAGLLTECRDVLLELVEHH 111 (161)
T ss_dssp HHHTSTTSCCCHHH-----HHHHHHHHHHHHHHHHTTT
T ss_pred hhhhccCccccHHH-----HHHHHHHHHHHHHHHHHhh
Confidence 34478998875432 4556666666666666543
Done!