RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy71
         (218 letters)



>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84
           {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 229

 Score = 71.8 bits (176), Expect = 5e-16
 Identities = 17/104 (16%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 51  EVRRDGPALSYVTSASTVFFTNLSLMITELQKVAFPSTGECAAAFVVWATREFNLFVSHV 110
           ++       +Y+T  + + F  +   + + Q +      + ++  V W + E +     +
Sbjct: 122 QIGSVDNPTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKISSILVDWCSDEVDNHFKLI 181

Query: 111 IRELFVTQSSLSTLSPCIAAVSAKCDQLTSLGLDLRYLLDGALR 154
            ++L    +        I +   + D L ++GLD  Y LD  ++
Sbjct: 182 DKQLL---NDEMLSPGSIKSSRKQIDGLKAVGLDFVYKLDEFIK 222


>d1tzya_ a.22.1.1 (A:) Histone H2A {Chicken (Gallus gallus),
          erythrocytes [TaxId: 9031]}
          Length = 106

 Score = 62.1 bits (151), Expect = 1e-13
 Identities = 30/44 (68%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query: 1  VLELAGNASKDLKVKRITPRHLQLAIRGDEEL-DSLIKATIAGG 43
          +LELAGNA++D K  RI PRHLQLAIR DEEL   L K TIA G
Sbjct: 50 ILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 93


>d1u35c1 a.22.1.1 (C:814-919) macro-H2A.1, histone domain {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 106

 Score = 60.6 bits (147), Expect = 6e-13
 Identities = 25/44 (56%), Positives = 33/44 (75%), Gaps = 1/44 (2%)

Query: 1  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGG 43
          +LELA NA++D K  R+TPRH+ LA+  DEEL+ L+K  TIA G
Sbjct: 49 ILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASG 92


>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 172

 Score = 61.0 bits (148), Expect = 2e-12
 Identities = 10/36 (27%), Positives = 23/36 (63%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 36
           +L+LAGN  ++++   IT + +++A+  D+ L  + 
Sbjct: 136 ILKLAGNYVRNIRHYEITKQDIKVAMCADKVLMDMF 171


>d1f66c_ a.22.1.1 (C:) Histone H2A {Human (Homo sapiens), variant
          H2A.Z [TaxId: 9606]}
          Length = 103

 Score = 57.6 bits (139), Expect = 8e-12
 Identities = 43/43 (100%), Positives = 43/43 (100%)

Query: 1  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 43
          VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG
Sbjct: 50 VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 92


>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit
          gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 78

 Score = 40.2 bits (94), Expect = 9e-06
 Identities = 8/36 (22%), Positives = 17/36 (47%)

Query: 1  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 36
          +   A   ++D K + +    + +AI   ++ D LI
Sbjct: 38 LTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 73


>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 66

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 1  VLELAGNASKDLKVKRITPRHLQLAI 26
          +L+ A   ++    K +T  HL+  I
Sbjct: 40 LLKKACQVTQSRNAKTMTTSHLKQCI 65


>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus
           kandleri [TaxId: 2320]}
          Length = 151

 Score = 28.6 bits (64), Expect = 0.35
 Identities = 5/27 (18%), Positives = 11/27 (40%)

Query: 1   VLELAGNASKDLKVKRITPRHLQLAIR 27
           + E A   + +   K +    ++ AI 
Sbjct: 116 LGEKAAEYADEDGRKTVQGEDVEKAIT 142


>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila
          melanogaster) [TaxId: 7227]}
          Length = 72

 Score = 24.3 bits (53), Expect = 4.6
 Identities = 4/36 (11%), Positives = 11/36 (30%)

Query: 1  VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI 36
                        + +   HL   +  ++ L+ L+
Sbjct: 30 AGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 65


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 734,076
Number of extensions: 30536
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 10
Length of query: 218
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 136
Effective length of database: 1,281,736
Effective search space: 174316096
Effective search space used: 174316096
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)