RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy710
(591 letters)
>gnl|CDD|149431 pfam08366, LLGL, LLGL2. This domain is found in lethal giant
larvae homolog 2 (LLGL2) proteins and syntaxin-binding
proteins like tomosyn. It has been identified in
eukaryotes and tends to be found together with WD
repeats (pfam00400).
Length = 105
Score = 155 bits (395), Expect = 1e-45
Identities = 54/95 (56%), Positives = 67/95 (70%)
Query: 399 EQCKPIQKVEWKHSRSGEGFVIFSGGLTYDKAGRSPSISVMHNKTTTVLEMEHNVVDFVT 458
CK I KVEWK +RSGE F+IFSGG+ G I+VMH K+TTVL+ ++DF T
Sbjct: 11 FPCKAINKVEWKTTRSGEPFIIFSGGMPRASYGDRHCITVMHGKSTTVLDFTSRIIDFFT 70
Query: 459 LCESPYICEMQEPYAIVVLLHNDLVVIDLLTPGFP 493
LCE+P+ E QEPYA+ VLL +LVVIDL TPG+P
Sbjct: 71 LCETPWPNEFQEPYALAVLLEEELVVIDLQTPGWP 105
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 67.0 bits (162), Expect = 1e-11
Identities = 55/360 (15%), Positives = 132/360 (36%), Gaps = 26/360 (7%)
Query: 46 ETDAAVIQMQFLTNEGALITATADDSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSK 105
+ ++ + F + L++ ++D ++ LW+ I ++ + L
Sbjct: 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDG 122
Query: 106 WLYV---GTEKGNIHVVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPS-KT 161
+ + G + + ++ + + + + P + S + LD + K
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKL 182
Query: 162 FRH----------GFPYQPTAIAFDPIQKLLAIG-TKTGSLRLL-GRPGVDAHVRHETDA 209
+ G +++AF P LL + G++RL G +
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHS 242
Query: 210 AVIQMQFLTNEGALITATADDSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYV 269
+ F + L + ++D ++ LW+ R ++ +L + + K L
Sbjct: 243 DSVVSSFSPDGSLLASGSSDGTIRLWDLRSSS-SLLRTLSGHSSSVLSVAFSPDGKLLAS 301
Query: 270 GTEKGNIHVVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLLLAYETGL 329
G+ G + + ++E+ G +++ +K H GP+ LS +P + + G
Sbjct: 302 GSSDGTVRLWDLET----GKLLSSLT-----LKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352
Query: 330 VVHWDLKLKRAEFRWQCSEPIKSVCWHYEGKQFLCSHTDGTISTWAVRPLAKPVSVNQPH 389
+ WDL+ + + + SV + +G+ TDGT+ W + + +++
Sbjct: 353 IRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412
Score = 61.6 bits (148), Expect = 5e-10
Identities = 65/400 (16%), Positives = 143/400 (35%), Gaps = 39/400 (9%)
Query: 11 TAIAFDPIQKLLAIGTKTGSLRLL---GRPGVDAHVRHETDAAVIQMQFLTNEG---ALI 64
T+IAF P +LL G+ G+++L + + D++V ++ + +G L
Sbjct: 69 TSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128
Query: 65 TATADDSLHLWNFRQKRPEIVHSLKFQRERITYIHL-PLQSKWLYVGTEKGNIHVVNIES 123
+++ D ++ LW+ +++ +L+ E +T + P + G I + ++ +
Sbjct: 129 SSSLDGTVKLWDLSTPG-KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRT 187
Query: 124 FTLSGYIINWNKAIDVCMKTHPGPIIHLS----------DNPLDPSKTFRHGFPYQPTAI 173
+ + + G ++ S D
Sbjct: 188 GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS 247
Query: 174 AFDPIQKLLAIGTKTGSLRLL----GRPGVDAHVRHETDAAVIQMQFLTNEGALITATAD 229
+F P LLA G+ G++RL + H ++V+ + F + L + ++D
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSSVLSVAFSPDGKLLASGSSD 305
Query: 230 DSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVG-TEKGNIHVVNIESFTLSG 288
++ LW+ + +LK ++ + L G ++ G I + ++ +
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK 365
Query: 289 YIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLLLAYETGLVVHWDL-KLKRAEFRWQCS 347
+ + + V + S + G V WDL +
Sbjct: 366 TLEGHSNVLSVSFSPDGRVVSSGSTD-------------GTVRLWDLSTGSLLRNLDGHT 412
Query: 348 EPIKSVCWHYEGKQFLCSHTDGTISTWAVRPLAKPVSVNQ 387
+ S+ + +GK +D TI W ++ K VS +
Sbjct: 413 SRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSP 452
Score = 47.0 bits (110), Expect = 2e-05
Identities = 37/208 (17%), Positives = 75/208 (36%), Gaps = 15/208 (7%)
Query: 14 AFDPIQKLLAIGTKTGSLRLL----GRPGVDAHVRHETDAAVIQMQFLTNEGALITATAD 69
+F P LLA G+ G++RL + H ++V+ + F + L + ++D
Sbjct: 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSSVLSVAFSPDGKLLASGSSD 305
Query: 70 DSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVG-TEKGNIHVVNIESFTLSG 128
++ LW+ + +LK ++ + L G ++ G I + ++ +
Sbjct: 306 GTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK 365
Query: 129 YIINWNKAIDVCMKTHPGPI--------IHLSDNPLDPSKTFRHGFPYQPTAIAFDPIQK 180
+ + + V + + L D G + T++ F P K
Sbjct: 366 TLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGK 425
Query: 181 LLAIGTKTGSLRLLGRPGVDAHVRHETD 208
LA G+ ++RL V D
Sbjct: 426 SLASGSSDNTIRLWDLKTSLKSVSFSPD 453
Score = 43.5 bits (101), Expect = 2e-04
Identities = 63/393 (16%), Positives = 122/393 (31%), Gaps = 68/393 (17%)
Query: 206 ETDAAVIQMQFLTNEGALITATADDSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSK 265
+ ++ + F + L++ ++D ++ LW+ I ++ + L
Sbjct: 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDG 122
Query: 266 WLYV---GTEKGNIHVVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLL 322
+ + G + + ++ + + + + P + S + LD
Sbjct: 123 NSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLD----- 177
Query: 323 LAYETGLVVHWDLKLKRAEFRWQCSE-PIKSVCWHYEGKQFLCSHT-DGTISTWAVRPLA 380
G + WDL+ + P+ S+ + +G + S + DGTI W
Sbjct: 178 -----GTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLW------ 226
Query: 381 KPVSVNQPHIKTNKDGKLEQCKPIQKVEWKHSRSGEGFVIFSGGLTYDKAGRSPSISVMH 440
L K ++ HS S G L S
Sbjct: 227 ----------------DLSTGKLLRSTLSGHSDSVVSSFSPDGSLL---------ASGSS 261
Query: 441 NKTTTVLEMEHNVVDFVTLC--ESPYICEMQEP-YAIVVLLHNDLVVI--DLLTPGFPCF 495
+ T + ++ + TL S + P ++ +D V DL T
Sbjct: 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321
Query: 496 ENPYPMDIHESPVTCCVYLAD-------CPSDLIPAFYSVGARGASKRTGFSEKEWPLSG 548
+ HE PV+ + D D + + K +S
Sbjct: 322 LT---LKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVS- 377
Query: 549 GEWSPTSCSYYEVILTGHADGSVKFWDASAGNL 581
+SP V+ +G DG+V+ WD S G+L
Sbjct: 378 --FSPDG----RVVSSGSTDGTVRLWDLSTGSL 404
Score = 36.6 bits (83), Expect = 0.035
Identities = 41/239 (17%), Positives = 75/239 (31%), Gaps = 28/239 (11%)
Query: 347 SEPIKSVCWHYEGKQFLCSHTDGTISTWAVRPLAKPVSVNQPHIKTNKDGKLEQCKPIQK 406
+ I S+ + +G+ L +DGTI W + N + + +G + K
Sbjct: 65 EDSITSIAFSPDGELLLSGSSDGTIKLWDLD--------NGEKLIKSLEGL--HDSSVSK 114
Query: 407 VEWKHSRSGEGFVIFSGGLTYDKAGRSPSISVMHNKTTTVLEMEHNVVDFVTLCESPYIC 466
+ I + D + +S K LE V + +
Sbjct: 115 LALSSPDGNS---ILLASSSLDGTVKLWDLS-TPGKLIRTLEGHSESVTSLAFSPDGKL- 169
Query: 467 EMQEPYAIVVLLHNDLVVIDLLTPGFPCFENPYPMDIHESPVTCCVYLADCPSDLIPAFY 526
A L + + DL T + + H PV+ + D +
Sbjct: 170 -----LASGSSLDGTIKLWDLRTG-----KPLSTLAGHTDPVSSLAFSPDGGLLIASGSS 219
Query: 527 SVGARGASKRTGFSEKEWPLSGGEWSPTSC--SYYEVILTGHADGSVKFWDASAGNLQV 583
R TG LSG S S ++ +G +DG+++ WD + + +
Sbjct: 220 DGTIRLWDLSTG-KLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLL 277
Score = 36.6 bits (83), Expect = 0.035
Identities = 69/350 (19%), Positives = 115/350 (32%), Gaps = 55/350 (15%)
Query: 253 ERITYIHLPLQSKWLYVGTEKGNIHVVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLS 312
+ IT I + L G+ G I + ++++ K I H + L+
Sbjct: 66 DSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---------KLIKSLEGLHDSSVSKLA 116
Query: 313 DNPLDPSKLLLAYET--GLVVHWDLKLKRAEFRW--QCSEPIKSVCWHYEGKQFL-CSHT 367
+ D + +LLA + G V WDL R SE + S+ + +GK S
Sbjct: 117 LSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSL 176
Query: 368 DGTISTWAVRPLAKPVSVNQPHIKTNKDGKLEQCKPIQKVEWKHSRSGEGFVIFSGGLTY 427
DGTI W +R KP+S H P+ + + S +G ++ + G +
Sbjct: 177 DGTIKLWDLRT-GKPLSTLAGHTD-----------PVSSLAF----SPDGGLLIASG-SS 219
Query: 428 DKAGRSPSISVMHNKTTTVLEMEHNVVDFVTLCESPYICEMQEPYAIVVLLHNDLVVIDL 487
D R +S +T+ +VV + S + + L + ++
Sbjct: 220 DGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT 279
Query: 488 LTPGFPCFENPYPMDIHESPVTCCVYLADCPSDLIPAFYSVGARGASKRTGFSEKEWPLS 547
L H S V + D L R TG L
Sbjct: 280 L-------------SGHSSSVLSVAFSPD-GKLLASGSSDGTVRLWDLETGKLLSSLTLK 325
Query: 548 GGE-------WSPTSCSYYEVILTGHADGSVKFWDASAGNLQVLYKLKTP 590
G E +SP + G DG+++ WD G + +
Sbjct: 326 GHEGPVSSLSFSPDGSLL---VSGGSDDGTIRLWDLRTGKPLKTLEGHSN 372
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 53.5 bits (129), Expect = 9e-08
Identities = 48/334 (14%), Positives = 111/334 (33%), Gaps = 65/334 (19%)
Query: 51 VIQMQFLTNEGALITATADDSLHLWNFRQKRPEI---VHSLKFQRERITYIHLPLQSKWL 107
V + F + L T + D ++ +W+ H+ + + +L
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-----VRDVAASADGTYL 66
Query: 108 YVGTEKGNIHVVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKTFRHGFP 167
G+ I + ++E+ + H +
Sbjct: 67 ASGSSDKTIRLWDLETGECVRT-----------LTGHTSYV------------------- 96
Query: 168 YQPTAIAFDPIQKLLAIGTKTGSLRLL-GRPGVDAHVRHETDAAVIQMQFLTNEGALITA 226
+++AF P ++L+ ++ ++++ G V + F + + ++
Sbjct: 97 ---SSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153
Query: 227 TADDSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVGTEKGNIHVVNIESFTL 286
+ D ++ LW+ R + V +L + + + L + G I + ++ +
Sbjct: 154 SQDGTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
Query: 287 SGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLLLAY-ETGLVVHWDLKLKRAEFRWQ 345
G ++ H + ++ +P LL + E G + WDL+ Q
Sbjct: 212 LG-----------TLRGHENGVNSVAFSP--DGYLLASGSEDGTIRVWDLRTGE---CVQ 255
Query: 346 C----SEPIKSVCWHYEGKQFLCSHTDGTISTWA 375
+ + S+ W +GK+ DGTI W
Sbjct: 256 TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
Score = 40.4 bits (95), Expect = 0.002
Identities = 26/173 (15%), Positives = 59/173 (34%), Gaps = 25/173 (14%)
Query: 211 VIQMQFLTNEGALITATADDSLHLWNFRQKRPEI---VHSLKFQRERITYIHLPLQSKWL 267
V + F + L T + D ++ +W+ H+ + + +L
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-----VRDVAASADGTYL 66
Query: 268 YVGTEKGNIHVVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLLLA--Y 325
G+ I + ++E+ + H + ++ P +L+
Sbjct: 67 ASGSSDKTIRLWDLETGECVRT-----------LTGHTSYVSSVA---FSPDGRILSSSS 112
Query: 326 ETGLVVHWDLKLKRAEFRWQC-SEPIKSVCWHYEGKQFLCSHTDGTISTWAVR 377
+ WD++ + + ++ + SV + +G S DGTI W +R
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165
Score = 33.5 bits (77), Expect = 0.29
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 4 HGFPYQPTAIAFDPIQKLLAIGTKTGSLRLL-GRPGVDAHVRHETDAAVIQMQFLTNEGA 62
G ++AF P LLA G++ G++R+ R G +V + + +
Sbjct: 216 RGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKR 275
Query: 63 LITATADDSLHLWN 76
L + +AD ++ +W+
Sbjct: 276 LASGSADGTIRIWD 289
>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional.
Length = 493
Score = 34.9 bits (80), Expect = 0.12
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 306 GPIIHLSDNPLDPSKLLLAYETGLVVHWDL 335
GPII ++ NP DP KL A E G ++ W +
Sbjct: 76 GPIIDVAFNPFDPQKLFTASEDGTIMGWGI 105
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 30.0 bits (68), Expect = 0.21
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 347 SEPIKSVCWHYEGKQFLCSHTDGTISTW 374
+ P+ SV + +G DGT+ W
Sbjct: 11 TGPVTSVAFSPDGNLLASGSDDGTVRVW 38
Score = 27.3 bits (61), Expect = 2.4
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWD 575
+SP ++ +G DG+V+ WD
Sbjct: 19 FSPDGN----LLASGSDDGTVRVWD 39
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats (blades)
of the beta propeller domain.
Length = 40
Score = 30.0 bits (68), Expect = 0.27
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 347 SEPIKSVCWHYEGKQFLCSHTDGTISTW 374
+ P+ SV + +GK DGTI W
Sbjct: 12 TGPVTSVAFSPDGKYLASGSDDGTIKLW 39
Score = 27.3 bits (61), Expect = 2.0
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWD 575
+SP + + +G DG++K WD
Sbjct: 20 FSPDG----KYLASGSDDGTIKLWD 40
>gnl|CDD|182933 PRK11057, PRK11057, ATP-dependent DNA helicase RecQ; Provisional.
Length = 607
Score = 30.1 bits (68), Expect = 3.7
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 18/64 (28%)
Query: 64 ITATADDS--------LHLWNFRQKRPEIVHSLKFQRERITYI----HLPLQSKWLYVGT 111
+TATADD+ L L ++ F R I Y PL YV
Sbjct: 180 LTATADDTTRQDIVRLLGL------NDPLIQISSFDRPNIRYTLVEKFKPLDQLMRYVQE 233
Query: 112 EKGN 115
++G
Sbjct: 234 QRGK 237
Score = 30.1 bits (68), Expect = 3.7
Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 18/64 (28%)
Query: 224 ITATADDS--------LHLWNFRQKRPEIVHSLKFQRERITYI----HLPLQSKWLYVGT 271
+TATADD+ L L ++ F R I Y PL YV
Sbjct: 180 LTATADDTTRQDIVRLLGL------NDPLIQISSFDRPNIRYTLVEKFKPLDQLMRYVQE 233
Query: 272 EKGN 275
++G
Sbjct: 234 QRGK 237
>gnl|CDD|218033 pfam04339, DUF482, Protein of unknown function, DUF482. This
family contains several proteins of uncharacterized
function.
Length = 370
Score = 29.4 bits (67), Expect = 5.0
Identities = 21/78 (26%), Positives = 25/78 (32%), Gaps = 22/78 (28%)
Query: 3 RHGFPYQP---TAIAFDPIQKLLAIGTKTGSLRLLGRPGVDAHVRHETDAAVIQMQFLTN 59
R G Y P A+ F P+ TG RLL PG D A + +
Sbjct: 83 RAGLRYYPKLLGAVPFTPV---------TGP-RLLIAPGEDEAALRAALLAALD-ELAEQ 131
Query: 60 EGALITATADDSLHLWNF 77
G SLH F
Sbjct: 132 NGLS-------SLH-VLF 141
Score = 29.4 bits (67), Expect = 5.0
Identities = 21/78 (26%), Positives = 25/78 (32%), Gaps = 22/78 (28%)
Query: 163 RHGFPYQP---TAIAFDPIQKLLAIGTKTGSLRLLGRPGVDAHVRHETDAAVIQMQFLTN 219
R G Y P A+ F P+ TG RLL PG D A + +
Sbjct: 83 RAGLRYYPKLLGAVPFTPV---------TGP-RLLIAPGEDEAALRAALLAALD-ELAEQ 131
Query: 220 EGALITATADDSLHLWNF 237
G SLH F
Sbjct: 132 NGLS-------SLH-VLF 141
>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component.
Length = 416
Score = 28.9 bits (65), Expect = 8.6
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 365 SHTDGTISTWAVRPLAKPVSVNQPHIK-TNKDGKL 398
S+ G +ST AVR LAK ++ I T KDG++
Sbjct: 105 SNLSGVLSTPAVRHLAKQYGIDLNDILGTGKDGRV 139
>gnl|CDD|176667 cd07243, 2_3_CTD_C, C-terminal domain of catechol 2,3-dioxygenase.
This subfamily contains the C-terminal, catalytic,
domain of catechol 2,3-dioxygenase. Catechol
2,3-dioxygenase (2,3-CTD, catechol:oxygen
2,3-oxidoreductase) catalyzes an extradiol cleavage of
catechol to form 2-hydroxymuconate semialdehyde with the
insertion of two atoms of oxygen. The enzyme is a
homotetramer and contains catalytically essential Fe(II)
. The reaction proceeds by an ordered bi-unit mechanism.
First, catechol binds to the enzyme, this is then
followed by the binding of dioxygen to form a tertiary
complex, and then the aromatic ring is cleaved to
produce 2-hydroxymuconate semialdehyde. Catechol
2,3-dioxygenase belongs to the type I extradiol
dioxygenase family. The subunit comprises the N- and
C-terminal domains of similar structure fold, resulting
from an ancient gene duplication. The active site is
located in a funnel-shaped space of the C-terminal
domain. This subfamily represents the C-terminal domain.
Length = 143
Score = 27.7 bits (62), Expect = 9.4
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 14/70 (20%)
Query: 108 YVGTEKGNIHVVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKTFRHGFP 167
+VG G +H SF ++ +W DV G II ++D +D T RHG
Sbjct: 60 FVGGPDGKLHHF---SF----FLESWE---DV---LKAGDIISMNDVSIDIGPT-RHGIT 105
Query: 168 YQPTAIAFDP 177
T FDP
Sbjct: 106 RGQTIYFFDP 115
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.438
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 30,261,758
Number of extensions: 2922740
Number of successful extensions: 2062
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2035
Number of HSP's successfully gapped: 26
Length of query: 591
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 489
Effective length of database: 6,413,494
Effective search space: 3136198566
Effective search space used: 3136198566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.7 bits)