RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy710
(591 letters)
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis
complex; 2.40A {Saccharomyces cerevisiae}
Length = 902
Score = 329 bits (844), Expect = e-102
Identities = 98/488 (20%), Positives = 181/488 (37%), Gaps = 70/488 (14%)
Query: 157 DPSKTFRHGFPYQPTAIAFDPIQKLLAIGTKTGSLRLLGRPGVDAHVRHETDAAVIQMQF 216
++T ++G +P A AFD Q LLAI T TG + + G+ V+ ++ E +A+ +M+F
Sbjct: 7 SLAETNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRF 66
Query: 217 LTNEGALITATADDSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVGTEKGNI 276
+ L+ A D++++ + ++ V + F +IT I W+ +G + G++
Sbjct: 67 VKG-IYLVVINAKDTVYVLSLYSQK---VLTTVFVPGKITSIDTDASLDWMLIGLQNGSM 122
Query: 277 HVVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLLLAYETGLVVHWDLK 336
V +I+ LS + ++ + PI+ + NP D +L++YE + + L
Sbjct: 123 IVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTLT-YSLV 181
Query: 337 LKRAEFRWQCSEP-------------------IKSVCWHYEGKQFLCSHTDGTISTWAVR 377
+ + P + +H + H D ++ W
Sbjct: 182 ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDAN 241
Query: 378 -------PLAKPVSVNQPHIKTNKDGKLEQCKPIQKVEWKHSRSGEGFVIFSGG------ 424
+N P +D I KV W + E +
Sbjct: 242 SGHMIMARTVFETEINVPQPDYIRDSSTN-AAKISKVYWMCENNPEYTSLLISHKSISRG 300
Query: 425 ----LTYDKAGRSP--SISVMHNKTT----------TVLEMEHNVVDFVTLC-ESPYICE 467
LT G +P SI+ L +V+ + + +SPY
Sbjct: 301 DNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG 360
Query: 468 MQEPYAIVVLLHNDLVVIDLLTPG-FPCFENPYPMDIH-ESPVTCCVYLADCPSDLIPAF 525
P I+++L N + L G F + +P ++ P+ A P+ L
Sbjct: 361 CHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGA 420
Query: 526 YSVGARGASKRTGFSEKEWPLSGG---EWSPTSCSYYEVILTGHADGSVKFWDASAGNLQ 582
S K++ L GG + Y +TGH++GSV+ +DAS G++Q
Sbjct: 421 LSAA----------QNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQ 470
Query: 583 VLYKLKTP 590
+
Sbjct: 471 DNASFEVN 478
Score = 160 bits (406), Expect = 8e-42
Identities = 67/378 (17%), Positives = 137/378 (36%), Gaps = 23/378 (6%)
Query: 1 TFRHGFPYQPTAIAFDPIQKLLAIGTKTGSLRLLGRPGVDAHVRHETDAAVIQMQFLTNE 60
T ++G +P A AFD Q LLAI T TG + + G+ V+ ++ E +A+ +M+F+
Sbjct: 11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKG- 69
Query: 61 GALITATADDSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVGTEKGNIHVVN 120
L+ A D++++ + ++ V + F +IT I W+ +G + G++ V +
Sbjct: 70 IYLVVINAKDTVYVLSLYSQK---VLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYD 126
Query: 121 IESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKTFRHGFPYQPTAIAFDP--- 177
I+ LS + ++ + PI+ + NP D Y+ + +
Sbjct: 127 IDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVL---ISYEYVTLTYSLVEN 183
Query: 178 -IQKLLAIGTKTGSLRLLGRPGVDAHVRHETDAAVIQMQFLTNEGALITATADDSLHLWN 236
I++ + + + VIQ + N +IT D+SL W+
Sbjct: 184 EIKQSFIYELPPFAPGGDFSEKTNEKRTPK----VIQSLYHPNSLHIITIHEDNSLVFWD 239
Query: 237 FRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVGTEKGNIHVVNIESFTLSGYIINWNKA 296
+ ++ T I++P T I V Y +
Sbjct: 240 ANSGHMIMARTVF-----ETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLL-IS 293
Query: 297 IDVCMKTHPGPIIHLSDNPLDPSKLLLAYETGLVVHWDLKLKRAEFRWQCSEPIKSVCWH 356
+ + + P + +YE G+ ++ + F + PI ++
Sbjct: 294 HKSISRGDNQSLTMIDLGY-TPRYSITSYE-GMKNYYANPKQMKIFPLPTNVPIVNILPI 351
Query: 357 YEGKQFLCSHTDGTISTW 374
+ + +
Sbjct: 352 PRQSPYFAGCHNPGLILL 369
Score = 43.7 bits (102), Expect = 2e-04
Identities = 44/304 (14%), Positives = 90/304 (29%), Gaps = 56/304 (18%)
Query: 49 AAVIQMQFLTNEGALITATADDSLHLWNFRQKRPEIVHSLKFQRER---------ITYIH 99
Q A IT ++ S+ +++ + S + R + I
Sbjct: 436 RTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKIS 495
Query: 100 LPLQSKWLYVGTEKGNIHVVNI---ESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPL 156
++ L V E G++ + + +++ + + ++ + L D
Sbjct: 496 FAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRD 555
Query: 157 DPSKTFRHGF---------PYQPTAIAFDPIQKLLAIGTKTGSLRLLGRPGVDAHVRHET 207
R GF + +AI I + I GSL L+ R G
Sbjct: 556 RAPTGVRQGFMPSTAVHANKGKTSAINNSNI-GFVGIAYAAGSLMLIDRRG--------- 605
Query: 208 DAAVIQMQFLTNEGALITATADDSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWL 267
A+I M+ + + V ++F + Y S +
Sbjct: 606 -PAIIYMENIR-----------------EISGAQSACVTCIEFV--IMEYGDDGYSSILM 645
Query: 268 YVGTEKGNIHVVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLLLAYET 327
GT+ G + I + + + + +D+ T GPI + + T
Sbjct: 646 VCGTDMGEVITYKILPASGGKFDV---QLMDITNVTSKGPIHKI--DAFSKETKSSCLAT 700
Query: 328 GLVV 331
+
Sbjct: 701 IPKM 704
Score = 34.5 bits (78), Expect = 0.11
Identities = 29/215 (13%), Positives = 72/215 (33%), Gaps = 20/215 (9%)
Query: 146 GPIIHLSDNPLDPSKTFRHGFPYQPTAIAFDPIQKLLAIGTKTGSLRLLGRPGVDAHVRH 205
G I + ++ S+T I+F LA+ +TG + L + V+
Sbjct: 467 GDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLF-KYEVNQFYSV 525
Query: 206 ETDAAVIQMQFLTNEGALITATADDSLHLWNFRQKRPEIVHS-------LKFQRERITYI 258
E ++ +L + + L + R + P V + + + + I
Sbjct: 526 ENRPESGDLEMNFRRFSL----NNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAI 581
Query: 259 HLPLQSKW--LYVGTEKGNIHVVNIE--SFTLSGYIINWNKAIDVCMKTHPGPIIHLSDN 314
+ S + + G++ +++ + I + A C+ I+ D+
Sbjct: 582 NN---SNIGFVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDD 638
Query: 315 PLDPSKLLLAYETGLVVHWDLKLKRAEFRWQCSEP 349
++ + G V+ + + L + ++
Sbjct: 639 GYSSILMVCGTDMGEVITYKI-LPASGGKFDVQLM 672
Score = 29.5 bits (65), Expect = 3.7
Identities = 29/266 (10%), Positives = 67/266 (25%), Gaps = 43/266 (16%)
Query: 171 TAIAFDPIQKLLAIGTKTGSLRL------------LGRPGVDAHVRHETDAAVIQMQFLT 218
G GS+R+ + + + AV ++ F
Sbjct: 439 RQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA 498
Query: 219 NEGALITATADDSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVGTEKGNIHV 278
L + + L+ + +F L+ + N +
Sbjct: 499 ETLELAVSIETGDVVLFKYEVN--------QFYSVENRPESGDLEMNFRRFSLNNTNGVL 550
Query: 279 VNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLL-LAYETGLVVHWDLKL 337
V++ +G + + V + G ++ + +AY G ++ D +
Sbjct: 551 VDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAIN---NSNIGFVGIAYAAGSLMLIDRRG 605
Query: 338 KRAEFRWQCSEPIKSVCWHYEGKQF---------------LCSHTDGTISTWAVRPLAKP 382
+ E + +F +C G + T+ + P +
Sbjct: 606 PAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGG 665
Query: 383 VSVNQ--PHIKTNKDGKLEQCKPIQK 406
Q G + + K
Sbjct: 666 KFDVQLMDITNVTSKGPIHKIDAFSK 691
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 59.8 bits (144), Expect = 7e-10
Identities = 48/344 (13%), Positives = 93/344 (27%), Gaps = 50/344 (14%)
Query: 164 HGFPYQPTAIAFDPIQKLLAIGTKTGSLRLLGRPGVD-----AHVRHETDAAVIQMQFLT 218
FPY+ + + + + G+L T +
Sbjct: 33 KTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRG 92
Query: 219 NEGALITATADDSLHLWNFRQKRPEIVHSLKFQRERITYIHLP-LQSKWLYVGTEKGNIH 277
L+ + + + + + + + E I + +++ +G I
Sbjct: 93 PCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIG 152
Query: 278 VVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLLLAY--ETGLVVHWDL 335
+ E + V L LLLA G++ ++L
Sbjct: 153 FQSYED----------DSQYIVHSAKSDVEYSSGV---LHKDSLLLALYSPDGILDVYNL 199
Query: 336 ---KLKRAEFRWQCSEPIKSVCWHYEGKQFLCSHTDGTISTWAVRPLAKPVSVNQPHIKT 392
+ F IK V + G ++ D T+ + +R K V T
Sbjct: 200 SSPDQASSRFPVDEEAKIKEVKFADNG-YWMVVECDQTVVCFDLR---KDVGTLAYPTYT 255
Query: 393 NKDGKLEQCKPIQKVEWKHSRSGEGFVIFSGG------LTYDKAGRSPSISVMHNKTTTV 446
+ K V + SG+ + +S +DK ++ +
Sbjct: 256 IPEFK------TGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCL-- 307
Query: 447 LEMEHNVVDFVTLCESPYICEMQEPYAIVVLLHNDLVVIDLLTP 490
+ D +C I +L ND I LTP
Sbjct: 308 QSDTADFTDMDVVCGDGGI--------AAILKTNDSFNIVALTP 343
Score = 52.4 bits (125), Expect = 2e-07
Identities = 29/314 (9%), Positives = 82/314 (26%), Gaps = 51/314 (16%)
Query: 4 HGFPYQPTAIAFDPIQKLLAIGTKTGSLRLLGRPGVD-----AHVRHETDAAVIQMQFLT 58
FPY+ + + + + G+L T +
Sbjct: 33 KTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIISRG 92
Query: 59 NEGALITATADDSLHLWNFRQKRPEIVHSLKFQRERITYIHLP-LQSKWLYVGTEKGNIH 117
L+ + + + + + + + E I + +++ +G I
Sbjct: 93 PCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIG 152
Query: 118 VVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKTFRHGFPYQPTAIAFDP 177
+ E + V ++
Sbjct: 153 FQSYED----------DSQYIVHSAKSDVEY----------------------SSGVLHK 180
Query: 178 IQKLLAIGTKTGSLRLL----GRPGVDAHVRHETDAAVIQMQFLTNEGALITATADDSLH 233
LLA+ + G L + + + +A + +++F N G + D ++
Sbjct: 181 DSLLLALYSPDGILDVYNLSSPDQ-ASSRFPVDEEAKIKEVKFADN-GYWMVVECDQTVV 238
Query: 234 LWNFRQKRPEIV---HSLKFQRERITYIHLPLQSKWLYVGTEKGNIHVVNIESFTLSGYI 290
++ R+ + +++ + + K + + + N + +
Sbjct: 239 CFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNS----LTIYKFDKKT 294
Query: 291 INWNKAIDVCMKTH 304
NW K + +
Sbjct: 295 KNWTKDEESALCLQ 308
Score = 36.3 bits (83), Expect = 0.023
Identities = 16/151 (10%), Positives = 48/151 (31%), Gaps = 13/151 (8%)
Query: 1 TFRHGFPYQPTAIAFDPIQKLLAIGTKTGSLRLL----GRPGVDAHVRHETDAAVIQMQF 56
+ ++ LLA+ + G L + + + +A + +++F
Sbjct: 164 VHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQ-ASSRFPVDEEAKIKEVKF 222
Query: 57 LTNEGALITATADDSLHLWNFRQKRPEIV---HSLKFQRERITYIHLPLQSKWLYVGTEK 113
N G + D ++ ++ R+ + +++ + + K + + +
Sbjct: 223 ADN-GYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNE 281
Query: 114 GNIHVVNIESFTLSGYIINWNKAIDVCMKTH 144
N + + NW K + +
Sbjct: 282 SNS----LTIYKFDKKTKNWTKDEESALCLQ 308
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A
{Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Length = 355
Score = 55.4 bits (133), Expect = 2e-08
Identities = 38/261 (14%), Positives = 81/261 (31%), Gaps = 24/261 (9%)
Query: 11 TAIAFDPIQKLLAIGTKTGSLRLLG-RPGVDAHVRHETDAAVIQMQFLTNEGALITATAD 69
T F+ Q L + T + P + + ++M TN A +T
Sbjct: 23 TDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTG-VK 80
Query: 70 DSLHLWNFRQKR-------PEIVHSLKFQRERITY-----IHLPLQSKWLYVGTEKGNIH 117
+ +H+W+ +K+ V L RE I I + T+
Sbjct: 81 EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFG 140
Query: 118 VV-----NIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKTFRHGFPYQPTA 172
V + ++ + + + + +
Sbjct: 141 GVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKM 200
Query: 173 IAFDPIQKLLAIGTKTGSL-RLLGRP-GVDAHV--RHETDAAVIQMQFLTNEGALITATA 228
+ + ++A ++ G++ R+ GV R A V+ M++ T+ L +
Sbjct: 201 VRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSD 260
Query: 229 DDSLHLWNFRQKRPEIVHSLK 249
+LH++ + H+LK
Sbjct: 261 KWTLHVFEIFNDQDNKRHALK 281
Score = 47.3 bits (112), Expect = 8e-06
Identities = 38/252 (15%), Positives = 73/252 (28%), Gaps = 47/252 (18%)
Query: 171 TAIAFDPIQKLLAIGTKTGSLRLLG-RPGVDAHVRHETDAAVIQMQFLTNEGALITATAD 229
T F+ Q L + T + P + + ++M TN A +T
Sbjct: 23 TDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTG-VK 80
Query: 230 DSLHLWNFRQKR-------PEIVHSLKFQRERITY-----IHLPLQSKWLYVGTEKGN-- 275
+ +H+W+ +K+ V L RE I I + T+
Sbjct: 81 EVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFG 140
Query: 276 --------------------IHVVNIESF--TLSGYIINWNKAIDVCMKT---HPGPIIH 310
IH+ ++S + KAI H PI
Sbjct: 141 GVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKM 200
Query: 311 LSDNPLDPSKLLLAYETGLVVH-WDLK--LKRAEFRW-QCSEPIKSVCWHYEGKQFLCSH 366
+ N + + G ++ + + + EFR + + W +G +
Sbjct: 201 VRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVS 259
Query: 367 TDGTISTWAVRP 378
T+ + +
Sbjct: 260 DKWTLHVFEIFN 271
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 5e-07
Identities = 61/332 (18%), Positives = 97/332 (29%), Gaps = 106/332 (31%)
Query: 298 DVCMKTHPGPIIHLS--DNPLDPSKLLLAYETGLVVHWDLKLKRAEFRWQCSEPIKSVCW 355
+ K P P + D P P++L+ + G V K +F + +
Sbjct: 35 EQFNKILPEPTEGFAADDEPTTPAELVGKF-LGYVSSLVEPSKVGQF----DQVLNLCLT 89
Query: 356 HYEGKQFLCSHTDGTISTWAVRPLA---KPVSVNQPHIKTNKDGKLEQCKPIQKVE---- 408
+E +L D I A + L + + IK ++ +P K
Sbjct: 90 EFE-NCYL-EGND--IHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL 145
Query: 409 WKHSRSGEG--FVIFSG-GLTYDKAGRSPSISVMHNKTTTVLEMEHNVVDFVTLCESPYI 465
++ G IF G G T D Y
Sbjct: 146 FRAVGEGNAQLVAIFGGQGNTDD-----------------------------------YF 170
Query: 466 CEMQEPYAIVVLLHNDLV-----VIDLLTPGFPCFENPYP--MDIH---ESPVTC--CVY 513
E+++ Y +L DL+ + L E + ++I E+P Y
Sbjct: 171 EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 514 LADCP-SDLIP-------AFYSVGARGASKRTGFSEKEWPLSGGEWSPTSCSYYEVILTG 565
L P S P A Y V +K GF+ P GE TG
Sbjct: 231 LLSIPIS--CPLIGVIQLAHYVV----TAKLLGFT----P---GELRSYLKG-----ATG 272
Query: 566 HADGSV------------KFWDASAGNLQVLY 585
H+ G V F+ + + VL+
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Score = 49.7 bits (118), Expect = 3e-06
Identities = 90/565 (15%), Positives = 155/565 (27%), Gaps = 189/565 (33%)
Query: 1 TFRHGFPYQPTAIAFDPIQKLLAIGTKTGSLR-----LLGRPGVDAHVRHETDAAVIQM- 54
+ H PTA F Q L+ +L P + + ++
Sbjct: 15 SLEHVLLV-PTASFFIASQ-----------LQEQFNKILPEP-TEGFAADDEPTTPAELV 61
Query: 55 -QFLTNEGALITATADDS----------LHLWNFRQK--RPEIVHSL-----------KF 90
+FL +++ + S L L F +H+L
Sbjct: 62 GKFL----GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 91 QRERI--TY----------IHLPLQSKWLYVGTEKGNIHVV-------NIESF-----TL 126
+ + + Y S L+ +GN +V N + + L
Sbjct: 118 KTKELIKNYITARIMAKRPFDKKSNSA-LFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 127 SGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKTFRHGF---------------PYQPT 171
Y ++ + +K + L LD K F G Y +
Sbjct: 177 --YQT-YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLS 233
Query: 172 A-IAFDPIQKLLAIGTKTGSLRLLG-RPGVDAHVRHETDAAVIQMQFLTNEGALITATAD 229
I+ P+ ++ + + +LLG PG +R A Q L A+ A D
Sbjct: 234 IPISC-PLIGVIQLAHYVVTAKLLGFTPG---ELRSYLKGATGHSQGLV--TAVAIAETD 287
Query: 230 DSLHLW-NFRQKRPEIVHSLKFQ---RERITYIHLPLQSKWLYVGTEKGN------IHVV 279
W +F + + L F R Y + L L E + +
Sbjct: 288 S----WESFFVSVRKAITVL-FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 280 NIESFTLSGYIINWNKAIDVCMKTHPGPIIHLS-----DN-----PLDPSKLLLAYETGL 329
N+ + Y+ N + G + +S N P P L GL
Sbjct: 343 NLTQEQVQDYVNKTNSHLP------AGKQVEISLVNGAKNLVVSGP--PQSL-----YGL 389
Query: 330 VVHWDL-KLK--------RAEFRWQCSE----------PIKSVCWH--Y--EGKQFLCSH 366
+ L K K R F SE P+ + +H +
Sbjct: 390 NLT--LRKAKAPSGLDQSRIPF----SERKLKFSNRFLPV-ASPFHSHLLVPASDLINKD 442
Query: 367 TDGTISTWAVRPLAKPVSVNQPHIKTNKD---------GKLEQCKPIQKVEWK---HSRS 414
++ + + PV D ++ C V+W+ ++
Sbjct: 443 LVKNNVSFNAKDIQIPVY----DTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 415 ------GEGFVIFSGGLTYD-KAGR 432
G G G LT+ K G
Sbjct: 499 THILDFGPGGASGLGVLTHRNKDGT 523
Score = 38.1 bits (88), Expect = 0.009
Identities = 44/237 (18%), Positives = 74/237 (31%), Gaps = 80/237 (33%)
Query: 371 ISTWAVRPLAKPVSVNQPHIKTNKDGKLEQCKPIQKVEWKH-SRSGEGFVIFSGGLTYDK 429
+ ++ RPL +++ H G LE + + S+ E F K
Sbjct: 1 MDAYSTRPL----TLS--H------GSLEHVLLVPTASFFIASQLQEQFN---------K 39
Query: 430 AGRSPSISV-MHNKTTTVLEMEHNVVDFVTLCESPYICEMQEPYAIVVLLHNDLVVIDLL 488
P+ ++ TT E+ V F+ Y+ + EP +L
Sbjct: 40 ILPEPTEGFAADDEPTTPAEL---VGKFLG-----YVSSLVEP-------SKVGQFDQVL 84
Query: 489 TPGFPCFENPYPM---DIHESPVTCCVYLADCP----SDLIPAFYSVGARGASKRTGFSE 541
FEN Y + DIH + + D +LI + + AR +KR
Sbjct: 85 NLCLTEFENCY-LEGNDIH-ALAAKLLQENDTTLVKTKELIKNYIT--ARIMAKR----- 135
Query: 542 KEWPLSGGEWSPTSCSYYEVILTGHADGSVKFWDASA-----GN-------LQVLYK 586
P S + +G+ + A GN L+ LY+
Sbjct: 136 ---PFDKKSNSA--------LFRAVGEGNAQLV---AIFGGQGNTDDYFEELRDLYQ 178
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription,
hypothetica protein, preinitiation complex, yeast RNA
polymerase III; 3.2A {Saccharomyces cerevisiae}
Length = 524
Score = 51.0 bits (121), Expect = 6e-07
Identities = 33/307 (10%), Positives = 82/307 (26%), Gaps = 37/307 (12%)
Query: 59 NEGALITATADDSLHLWNFRQKRPEIVHSLKFQRERITYIH--------LPLQSKWLYVG 110
G L + + +++ ++ ++ +T L + G
Sbjct: 224 LVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCG 283
Query: 111 TEKGNIHVVNIESFTLSGYIINWNK----AIDVCMKTHPGPIIHLS-----------DNP 155
+ G + ++ + + + ++ ++ +
Sbjct: 284 FKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI 343
Query: 156 LDPSKTFRHGFPYQPTAIAFDPIQKLLAIGTKTGSLRLL-GRPGVDAHVRHETDAAVIQM 214
T + + P SLR + R H + + +
Sbjct: 344 ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAI 403
Query: 215 QFLTNEGALITATADDSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVGTEKG 274
++ +AD SL + N ++ ++H +K + L W + + K
Sbjct: 404 GVSRLHPMVLAGSADGSLIITNAARR---LLHGIKNSSATQKSLRL-----WKWDYSIKD 455
Query: 275 NIHVVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLLLA--YETGLVVH 332
+ + + + Y + N + H I N A GL+
Sbjct: 456 DKYRI---DSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTL 512
Query: 333 WDLKLKR 339
L L+
Sbjct: 513 EYLSLEH 519
Score = 36.8 bits (84), Expect = 0.020
Identities = 19/198 (9%), Positives = 58/198 (29%), Gaps = 26/198 (13%)
Query: 21 LLAIGTKTGSLRL--LGRPGVDAHVRHETDAAVIQMQF---------LTNEGALITATAD 69
L+ ++ G++ + D HV + + + + ++ +
Sbjct: 227 CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFKN 286
Query: 70 DSLHLWNFRQKRPEIVHSLKFQRERITYIHL---PLQSKWLYVGTEKGNIHVVNIESFTL 126
+ ++ + I + + + G ++ N +
Sbjct: 287 GFVAEFDLTDPEV-PSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIAT 345
Query: 127 SGYIINWNKAIDVC-MKTHPGPIIHLSDNPLDPSKTF--RHGFPYQP--------TAIAF 175
+ ++ + ++ + P ++ + + R F P TAI
Sbjct: 346 TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGV 405
Query: 176 DPIQKLLAIGTKTGSLRL 193
+ ++ G+ GSL +
Sbjct: 406 SRLHPMVLAGSADGSLII 423
Score = 34.5 bits (78), Expect = 0.091
Identities = 27/203 (13%), Positives = 53/203 (26%), Gaps = 32/203 (15%)
Query: 4 HGFPYQPTAIAFDPIQKLLAIGTKTGSLRLL-GRPGVDAHVRHETDAAVIQMQFLTNEGA 62
+ + P SLR + R H + + +
Sbjct: 352 RFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPM 411
Query: 63 LITATADDSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVGTEKGNIHVVNIE 122
++ +AD SL + N ++ ++H +K + L W + + K + + +
Sbjct: 412 VLAGSADGSLIITNAARR---LLHGIKNSSATQKSLRL-----WKWDYSIKDDKYRI--- 460
Query: 123 SFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKTFRHGFPYQPTAIAFDPIQKLL 182
+ Y + N + H I N
Sbjct: 461 DSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKC-------------------Y 501
Query: 183 AIGTKTGSLRLLGRPGVDAHVRH 205
A G L L ++ H H
Sbjct: 502 AFSNSAGLLTLE-YLSLEHHHHH 523
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY
crystallography, beta-propeller, structure, mRNA export,
NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens}
PDB: 3fmo_A* 3fmp_A* 3fhc_A
Length = 434
Score = 50.7 bits (120), Expect = 9e-07
Identities = 32/231 (13%), Positives = 71/231 (30%), Gaps = 13/231 (5%)
Query: 264 SKWLYVGTEKGNIHVVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLLL 323
S + I ++ +F+ A +K G +I + NP PS + +
Sbjct: 108 SACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAV 167
Query: 324 AYETGLVVHWDLKLKRAEFRWQ-CSEPIKSVCWHYEGKQFLCSHTDGTISTWAVRPLAKP 382
G + + + + SVCW +GKQ +GT+ + K
Sbjct: 168 CLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTLQEKK 227
Query: 383 VSVNQPHIKTNKDGKLEQCKPIQKVEWKHSRSGEGFVIFSGGLTYDKAGRSPSISVMHNK 442
V P +++ + V W + ++++ + ++++ K
Sbjct: 228 VIPCPPFYESDHPV------RVLDVLW--IGTYVFAIVYAAADGTLETSPDVVMALLPKK 279
Query: 443 ----TTTVLEMEHNVVDFVTLCESPYICEMQEPYAIVVLLHNDLVVIDLLT 489
+ T + Y E + +V+ + +L
Sbjct: 280 EEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILA 330
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 44.3 bits (105), Expect = 7e-05
Identities = 30/172 (17%), Positives = 54/172 (31%), Gaps = 12/172 (6%)
Query: 229 DDSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVGTEKGNIHVVNIESFTLSG 288
+ + EI + + E ++P + + T ++ V + S
Sbjct: 106 KGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKH-PSK 164
Query: 289 YIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLLLAYETGLVVHWDLKLKRAEFRWQC-- 346
+ D+ ++ H LS NP LL A + + WD+ E R
Sbjct: 165 PEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAK 224
Query: 347 ------SEPIKSVCWHYEGKQFLCS-HTDGTISTWAVR--PLAKPVSVNQPH 389
+ ++ V WH + S D + W R +KP H
Sbjct: 225 NIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAH 276
Score = 31.3 bits (71), Expect = 1.1
Identities = 22/173 (12%), Positives = 52/173 (30%), Gaps = 28/173 (16%)
Query: 223 LITATADDSLHLWNFRQK-RPEIVHSLKFQRERITYIHLPLQSKWLYV-GTEKGNIHVVN 280
+ D L +W+ R + H++ + + S+++ G+ + + +
Sbjct: 247 FGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 306
Query: 281 IESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLLLAYETGLVVHWDLKLKRA 340
+ + L + H I + +P + + L + + WDL
Sbjct: 307 LRNLKLKLHSFES----------HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356
Query: 341 EFRWQC---------------SEPIKSVCWHYEGKQFLCS-HTDGTISTWAVR 377
E + + I W+ +CS D + W +
Sbjct: 357 EQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA 409
Score = 28.9 bits (65), Expect = 4.4
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 550 EWSPTSCSYYEVILTGHADGSVKFWDASAG 579
+WSP + + ++ + D + WD S
Sbjct: 328 QWSPHNET---ILASSGTDRRLHVWDLSKI 354
Score = 28.9 bits (65), Expect = 4.7
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAG 579
W+P Y +L+ D ++ WD +A
Sbjct: 189 WNPNLNGY---LLSASDDHTICLWDINAT 214
Score = 28.9 bits (65), Expect = 4.8
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGNLQV 583
++P S + ++ TG AD +V WD L++
Sbjct: 285 FNPYS-EF--ILATGSADKTVALWDLRNLKLKL 314
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 40.4 bits (95), Expect = 0.001
Identities = 41/236 (17%), Positives = 73/236 (30%), Gaps = 41/236 (17%)
Query: 170 PTAIAFDPIQKLLAIGTKTGSLRL----LGRPGVDAHVRHETDAAVIQMQFLTNEGALIT 225
P ++ + A + SL L + D+ + + N +
Sbjct: 26 PLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNKIIAG 84
Query: 226 ATADDSLHLWNFRQKRPEI------------VHSLKFQRERITYIHLPLQSKWLYVGTEK 273
A + SL L++ + I V ++KF Q L G
Sbjct: 85 ALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFN---------AKQDNVLASGGNN 135
Query: 274 GNIHVVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLLL-AYETGLVVH 332
G I + ++ T S N+ + +I L+ N + + A +
Sbjct: 136 GEIFIWDMNKCTESP--SNYTPLTPGQSMSSVDEVISLAWNQ-SLAHVFASAGSSNFASI 192
Query: 333 WDLKLKRAEFRWQCSEP-------IKSVCWHYEGKQFLC----SHTDGTISTWAVR 377
WDLK K+ + P + V WH + + S D +I W +R
Sbjct: 193 WDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248
Score = 29.2 bits (66), Expect = 4.2
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 5/39 (12%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGNLQVLYKLKT 589
W +L+ D +V W+ + + L +
Sbjct: 270 WCHQDEHL---LLSSGRDNTVLLWNPESA--EQLSQFPA 303
Score = 28.8 bits (65), Expect = 6.1
Identities = 6/30 (20%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGN 580
WS + ++I +GS++ + + N
Sbjct: 75 WSHNN----KIIAGALDNGSLELYSTNEAN 100
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 37.9 bits (88), Expect = 0.009
Identities = 28/202 (13%), Positives = 63/202 (31%), Gaps = 47/202 (23%)
Query: 11 TAIAFDPI-QKLLAIGTKTGSLRL------LGRPGVDAHVRHETDAAVIQMQFLTNEGAL 63
T+ A P L G+ G +++ + + + ++ + V Q+ + N A
Sbjct: 67 TSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAF 126
Query: 64 ITATADDSLHLWNF-RQKRPEIVHSLKFQRERITYIHLPLQSKWLYVGTEKGNIHVVNIE 122
++ D + + ++ V L + R + N + V +
Sbjct: 127 AVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLK-----------NFGKNEYAVRMR 175
Query: 123 SF-----------TLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKTFRHGFPYQPT 171
+F T +I ++ ++ RHG +
Sbjct: 176 AFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP--------------RHGAV---S 218
Query: 172 AIAFDPIQKLLAIGTKTGSLRL 193
+I D +L +GT G + +
Sbjct: 219 SICIDEECCVLILGTTRGIIDI 240
Score = 35.5 bits (82), Expect = 0.040
Identities = 36/273 (13%), Positives = 81/273 (29%), Gaps = 56/273 (20%)
Query: 11 TAIAFDPIQKLLAIGTKTGSLRLL----GRPGVDAHVRHETDAAVIQMQFLTNEGA---- 62
T I P A+ +K G + +L + + + I ++
Sbjct: 115 TQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRM 174
Query: 63 ----------LITATADDSLHLWNFRQKRPEIVHSLKFQRE--RITYIHLPLQSKWLYVG 110
L+ T + +++ R E + ++ ++ I + + L +G
Sbjct: 175 RAFVNEEKSLLVALTNLSRVIIFDIRT--LERLQIIENSPRHGAVSSICIDEECCVLILG 232
Query: 111 TEKGNIHVVNIESFTLSGYIINWNKAIDVCMKTHP----GPIIHLS---DNPL------- 156
T +G I + +I L + A ++ +I + L
Sbjct: 233 TTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292
Query: 157 -DPSKTFRHGFPYQPTAIAFDPIQKLLAIGTKTGSLRLLGRPGVDAHVRHETDAAVIQMQ 215
F QP+ F PI+K L + + +
Sbjct: 293 GHCQYAFI-NSDEQPSMEHFLPIEKGLE----------------ELNFCGIRSLNALSTI 335
Query: 216 FLTNEGALITATADDSLHLWNFRQKRPEIVHSL 248
++N+ L+T A S+ +++ ++
Sbjct: 336 SVSNDKILLTDEATSSIVMFSL--NELSSSKAV 366
Score = 35.5 bits (82), Expect = 0.049
Identities = 27/172 (15%), Positives = 56/172 (32%), Gaps = 23/172 (13%)
Query: 223 LITATADDSLHLWNFRQKRPEIVHSLKFQRERITYIH---------LPLQSKWLYVGTEK 273
LIT + + +WN ++ V+ +TY +P V ++
Sbjct: 79 LITGSDQGVIKIWNLKEIIVGEVY-----SSSLTYDCSSTVTQITMIP-NFDAFAVSSKD 132
Query: 274 GNIHVVNIESFTLSGYIINWNKAIDVCM-----KTHPGPIIHLSDNPLDPSKLLLAYETG 328
G I V+ + + + N + + + + + S L+
Sbjct: 133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS 192
Query: 329 LVVHWDLKLKRAEFRWQCSE---PIKSVCWHYEGKQFLCSHTDGTISTWAVR 377
V+ +D++ + S + S+C E + T G I W +R
Sbjct: 193 RVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIR 244
Score = 30.1 bits (68), Expect = 1.9
Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 9/104 (8%)
Query: 333 WDLK------LKRAEFRWQCSEPIKSVCWHYEGKQFLCSHTDGTISTWAVRPLAKPVSVN 386
W+LK + + + CS + + F S DG I V + V
Sbjct: 91 WNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK 150
Query: 387 QPHIKTNKDGKLEQCKP-IQKVEWKHSRSGEGFVIFSGGLTYDK 429
+ + + L+ V + + E ++ + T
Sbjct: 151 FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL--TNLS 192
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 37.1 bits (85), Expect = 0.014
Identities = 43/382 (11%), Positives = 98/382 (25%), Gaps = 62/382 (16%)
Query: 11 TAIAFDPIQKLLAIGTKTGSLRLLGR---PGVDAHVRHETDAAVIQMQFLTNEGALITAT 67
+ + F+ +LLA G K G + + + + +H R E + L +
Sbjct: 32 STVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLE 91
Query: 68 ADDSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVGTEKGNIHVVNIESFTLS 127
++ ++ + ++ L + + K + E + L
Sbjct: 92 IEEKINKIRWLPQKNAA--------------QFLLSTNDKTIKLWKISERDKRPEGYNLK 137
Query: 128 GYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKTFRHGFPYQPTAIAFDPIQKLLA---- 183
+ V P P + F + Y +I+ + +
Sbjct: 138 EEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSADD 197
Query: 184 -------IGTKTGSLRLLGRPGVDAHVRHETDAAVIQMQFLTNEGALI-TATADDSLHLW 235
+ S ++ + E + +F N +++ ++ L
Sbjct: 198 LRINLWHLEITDRSFNIVDIKPANMEELTEV---ITAAEFHPNSCNTFVYSSSKGTIRLC 254
Query: 236 NFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVGTEKGNIHVVNIESFTLSGYII---N 292
+ R HS F+ I ++ F+ SG + +
Sbjct: 255 DMRASALCDRHSKLFEEPEDPSNRSFF----------SEIISSISDVKFSHSGRYMMTRD 304
Query: 293 WNKAIDVCMKTHPGPIIHLSDNPLDPSKLLLAYETGLVVHWDLKLKRAEFRWQCSEPIKS 352
+ + P+ + SKL YE C
Sbjct: 305 YLSVKVWDLNMENRPVETYQVHEYLRSKLCSLYEN-----------------DCIFDKFE 347
Query: 353 VCWHYEGKQFLCSHTDGTISTW 374
CW+ + + +
Sbjct: 348 CCWNGSDSVVMTGSYNNFFRMF 369
Score = 36.3 bits (83), Expect = 0.027
Identities = 37/244 (15%), Positives = 76/244 (31%), Gaps = 55/244 (22%)
Query: 171 TAIAFDPIQKLLAIGTKTGSLRLLGR------------------------PGVDAHVRHE 206
+ + F+ +LLA G K G + + + P D E
Sbjct: 32 STVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLE 91
Query: 207 TDAAVIQMQFL--TNEGALITATADDSLHLWNFRQKRPEIV-HSLKFQRERITYIHLPLQ 263
+ + ++++L N + +T D ++ LW ++ ++LK + R
Sbjct: 92 IEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTT 151
Query: 264 SKWLYVGTEKGNIHVVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLLL 323
+ ++ + H I +S N D + L
Sbjct: 152 LRVPVFR----------------PMDLMVEASPRRIFANAHTYHINSISINS-D-YETYL 193
Query: 324 AYETGLVVHWDLKLKRAEFRWQCSEP---------IKSVCWH-YEGKQFLCSHTDGTIST 373
+ + + W L++ F +P I + +H F+ S + GTI
Sbjct: 194 SADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRL 253
Query: 374 WAVR 377
+R
Sbjct: 254 CDMR 257
Score = 28.2 bits (62), Expect = 8.8
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 535 KRTGFSEKEWPLSGGEWSPTSCSYYEVILTGHADGSVKFWDASAGNL 581
K E ++ E+ P SC+ + + G+++ D A L
Sbjct: 218 KPANMEELTEVITAAEFHPNSCN---TFVYSSSKGTIRLCDMRASAL 261
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 34.8 bits (80), Expect = 0.094
Identities = 17/202 (8%), Positives = 44/202 (21%), Gaps = 24/202 (11%)
Query: 174 AFDPIQKLLAIGTKTGSLRLLGRPGVDAHVRHETDAAVIQMQFLTNEGALITATADDSLH 233
+ D I+ + + + Q N L + +
Sbjct: 506 SLDWIKAKTELVGPAHLIHEFVAYRHILDEKDCAVCENFQEFLSLNGHLLGRQPFPNIVQ 565
Query: 234 LWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVGTEKGNIHVVNIESFTLSGYIINW 293
L + E+ K Q ++ W+ T K + +
Sbjct: 566 LGLCEPETSEVYRQAKLQAKQEGDTGRLYLE-WINKKTIKN------LSRLVVRP----- 613
Query: 294 NKAIDVCMKTHPGPIIHLSDNPLDPSKLLLAYETGLVVHWDLKLKRAEFRWQC-SEPIKS 352
H + H + D ++ + + + + + +
Sbjct: 614 ----------HTDAVYHACFSQ-DGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLC 662
Query: 353 VCWHYEGKQFLCSHTDGTISTW 374
+ + D + W
Sbjct: 663 CAFSSDDSYIATCSADKKVKIW 684
Score = 31.7 bits (72), Expect = 0.93
Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 21/208 (10%)
Query: 169 QPTAIAFDPIQKLLAIGTKTGSLRLL-GRPGVDAHVRHETDAAVIQMQFLTNEGALITAT 227
Q + F + ++ L+L+ G+ G + + +A V + +
Sbjct: 924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTG---QIDYLPEAQVSCCCLSPHLEYVAFGD 980
Query: 228 ADDSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVGTEKGNIHVVNIESFTLS 287
D ++ + R S ++ + +I K L +E I V N ++
Sbjct: 981 EDGAIKIIELPNNRV--FSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY- 1037
Query: 288 GYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLLLAYETGLVVHWDLKLKRAEFRWQC- 346
V ++ H + D S+LL G V W++ R E + C
Sbjct: 1038 -----------VFLQAHQETVKDFRLLQ-D-SRLLSWSFDGTVKVWNVITGRIERDFTCH 1084
Query: 347 SEPIKSVCWHYEGKQFLCSHTDGTISTW 374
+ S + +F + D T W
Sbjct: 1085 QGTVLSCAISSDATKFSSTSADKTAKIW 1112
Score = 30.6 bits (69), Expect = 1.7
Identities = 44/393 (11%), Positives = 103/393 (26%), Gaps = 63/393 (16%)
Query: 14 AFDPIQKLLAIGTKTGSLRLLGRPGVDAHVRHETDAAVIQMQFLTNEGALITATADDSLH 73
+ D I+ + + + Q N L + +
Sbjct: 506 SLDWIKAKTELVGPAHLIHEFVAYRHILDEKDCAVCENFQEFLSLNGHLLGRQPFPNIVQ 565
Query: 74 LWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVGTEKGNI------HVVNIESFTLS 127
L + E+ K Q ++ W+ T K H + S
Sbjct: 566 LGLCEPETSEVYRQAKLQAKQEGDTGRLYLE-WINKKTIKNLSRLVVRPHTDAVYHACFS 624
Query: 128 ------------GYIINWNKAIDVCMKT---HPGPIIHLSDNPLDPSKTFRHGFPYQPTA 172
+ + + H +
Sbjct: 625 QDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEV----------------------LC 662
Query: 173 IAFDPIQKLLAIGTKTGSLRL----LGRPGVDAHVRHETDAAVIQMQFLTNEGALITATA 228
AF +A + +++ G+ V + H V F L+ AT
Sbjct: 663 CAFSSDDSYIATCSADKKVKIWDSATGKL-VHTYDEHS--EQVNCCHFTNKSNHLLLATG 719
Query: 229 --DDSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVGTEKGNIHVVNIES--- 283
D L LW+ QK E +++ + + + L + G + + ++ S
Sbjct: 720 SNDFFLKLWDLNQK--ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 777
Query: 284 -FTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLLLAYETGLVVHWDLKLKR-AE 341
+++ + + + + + S + D K+++A + +++ AE
Sbjct: 778 RKSINVK--RFFLSSEDPPEDVEVIVKCCSWSA-DGDKIIVAAKNKVLLFDIHTSGLLAE 834
Query: 342 FRWQCSEPIKSVCWHYEGKQFLCSHTDGTISTW 374
I+ + + + + + W
Sbjct: 835 IHTGHHSTIQYCDFSPYDHLAVIALSQYCVELW 867
Score = 29.8 bits (67), Expect = 2.9
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 5/43 (11%)
Query: 545 PLSGGEWSPTSCSY-----YEVILTGHADGSVKFWDASAGNLQ 582
C + + ++ TG D +K WD + +
Sbjct: 694 TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECR 736
Score = 29.0 bits (65), Expect = 6.0
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 562 ILTGHADGSVKFWDASAGNLQ 582
+L+ DG+VK W+ G ++
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIE 1078
Score = 28.6 bits (64), Expect = 8.4
Identities = 2/20 (10%), Positives = 7/20 (35%)
Query: 562 ILTGHADGSVKFWDASAGNL 581
+ + V+ W+ +
Sbjct: 855 AVIALSQYCVELWNIDSRLK 874
>3ow8_A WD repeat-containing protein 61; structural genomics consortium,
SGC, transcriptio; 2.30A {Homo sapiens}
Length = 321
Score = 33.6 bits (78), Expect = 0.14
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGNLQVLYKLK 588
W E ++TG D VK W L + + L+
Sbjct: 40 WGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLE 77
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40
beta-barrel fold, DNA D DNA repair, HOST-virus
interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB:
3ei4_B*
Length = 435
Score = 33.5 bits (77), Expect = 0.18
Identities = 8/38 (21%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGNLQVLYKLK 588
W PT S + G G + W+ + K
Sbjct: 127 WHPTHPST---VAVGSKGGDIMLWNFGIKDKPTFIKGI 161
Score = 28.9 bits (65), Expect = 5.0
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 562 ILTGHADGSVKFWDASAGNLQVLYKLKT 589
+G+ + D L+V T
Sbjct: 180 FYASSMEGTTRLQDFKGNILRVFASSDT 207
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 33.1 bits (76), Expect = 0.26
Identities = 6/38 (15%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGNLQVLYKLK 588
++ + + + G+ D S +QV K
Sbjct: 126 FNQFNTNQ---LFVSSIRGATTLRDFSGSVIQVFAKTD 160
Score = 32.7 bits (75), Expect = 0.35
Identities = 9/39 (23%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 550 EWSPTSCSYYEVILTGHADGSVKFWDASAGNLQVLYKLK 588
EW PT + + G G + WD N +
Sbjct: 80 EWHPTHPT---TVAVGSKGGDIILWDYDVQNKTSFIQGM 115
Score = 28.9 bits (65), Expect = 4.8
Identities = 3/24 (12%), Positives = 8/24 (33%)
Query: 561 VILTGHADGSVKFWDASAGNLQVL 584
++ TG + G + +
Sbjct: 177 MLATGDSTGRLLLLGLDGHEIFKE 200
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national
project on prote structural and functional analysis,
structural genomics CON SGC; HET: M3L; 1.58A {Homo
sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A*
3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Length = 366
Score = 32.6 bits (75), Expect = 0.30
Identities = 10/91 (10%), Positives = 23/91 (25%), Gaps = 13/91 (14%)
Query: 504 HESPVTCCVYLADCPSDLIPAFYSVG---------ARGASKRTGFSEKEWPLSGG----E 550
H P+ + F +VG R S +
Sbjct: 17 HNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCA 76
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGNL 581
W+ S + + ++ + G ++ +
Sbjct: 77 WTYDSNTSHPLLAVAGSRGIIRIINPITMQC 107
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta
transducin repeat all beta, signaling protein; 1.10A
{Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A
2i3s_A 2i3t_A
Length = 342
Score = 32.5 bits (74), Expect = 0.37
Identities = 28/269 (10%), Positives = 70/269 (26%), Gaps = 56/269 (20%)
Query: 345 QCSEPIKSVCWHYEGKQFLCS-HTDGTISTWAVRPLAKPVSVNQPHIKTNKDGKLEQCKP 403
+ P+ + + G I + TN +
Sbjct: 54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI------GSPSFQALTNNEA------N 101
Query: 404 IQKVEWKHSRSGEGFVIFSGGLTYDKAGRSPSISV--MHNKTTTVLEMEHNVVDFVTLCE 461
+ + + +D I V N V+ +++ + +
Sbjct: 102 LGICRIC---KYGDDKLIAAS--WDG-----LIEVIDPRNYGDGVIAVKNLNSNNTKVKN 151
Query: 462 SPYICEMQEPYAIVVLLHNDLVVIDLLTPGFPCFENPYPMDIHESPVTCCVY-LADCPSD 520
+ + IV + ++ + L I ES + + +A P +
Sbjct: 152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD------NGTIEESGLKYQIRDVALLPKE 205
Query: 521 ------------LIPAFYSVGARGASKRTGFSEKEWPLSGGE----WSPTSCSY---YEV 561
+ F+ + F+ + L+ + + S + ++
Sbjct: 206 QEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF 265
Query: 562 ILTGHADGSVKFWDASAGNLQVLYKLKTP 590
+ T +DG + W+ K+K
Sbjct: 266 LYTAGSDGIISCWNLQTRK-----KIKNF 289
Score = 31.7 bits (72), Expect = 0.70
Identities = 32/232 (13%), Positives = 64/232 (27%), Gaps = 33/232 (14%)
Query: 171 TAIAFDPIQKLLAIGTKTGSLRL----LGRPGVDAHVRHETDAAVIQMQFLTNEGALI-T 225
+ I P + LL I + GSL + + VD ++ F+ N I
Sbjct: 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV 74
Query: 226 ATADDSLHLWNFRQKRPE--------IVHSLKFQRERITYIHLPLQSKWLYVGTEKGNIH 277
T + + + + L + G I
Sbjct: 75 GTVQGEILKVDLIGSPSFQALTNNEANLGICRI---------CKYGDDKLIAASWDGLIE 125
Query: 278 VVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKLLLAYETGLVVHWDLKL 337
V++ ++ K ++ I + + S+L++ V + L L
Sbjct: 126 VIDPRNYGDGV---IAVKNLNSNNTKVKNKIFTMD---TNSSRLIVGMNNSQVQWFRLPL 179
Query: 338 KRAEFRWQCSEPIK----SV-CWHYEGKQFLCSHTDGTISTWAVRPLAKPVS 384
+ +K V E + + CS DG ++ +
Sbjct: 180 CEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231
Score = 31.0 bits (70), Expect = 0.99
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 5/72 (6%)
Query: 11 TAIAFDPIQKLLAIGTKTGSLRL----LGRPGVDAHVRHETDAAVIQMQFLTNEGALI-T 65
+ I P + LL I + GSL + + VD ++ F+ N I
Sbjct: 15 SDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYV 74
Query: 66 ATADDSLHLWNF 77
T + +
Sbjct: 75 GTVQGEILKVDL 86
Score = 28.3 bits (63), Expect = 6.9
Identities = 33/196 (16%), Positives = 56/196 (28%), Gaps = 43/196 (21%)
Query: 63 LITATADDSLHLWNFRQKRPEIVHSLKFQRERITYIHLPLQSKWLYVGTEKGNIHVVNIE 122
LI A+ D + + + R ++ V N V +
Sbjct: 115 LIAASWDGLIEVIDPRNYGDGVIA----------------------VKNLNSNNTKVKNK 152
Query: 123 SFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNPLDPSKTFRHGFPYQPTAIAFDPI-QKL 181
FT+ + + V M L D G YQ +A P Q+
Sbjct: 153 IFTMDTN----SSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEG 208
Query: 182 LAIGTKTGSLRL------------LGRPGVDAHVRHETDA----AVIQMQFLTNEGALIT 225
A + G + + R H + D V ++F L T
Sbjct: 209 YACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYT 268
Query: 226 ATADDSLHLWNFRQKR 241
A +D + WN + ++
Sbjct: 269 AGSDGIISCWNLQTRK 284
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A
{Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C*
3rrm_C*
Length = 388
Score = 32.3 bits (73), Expect = 0.40
Identities = 20/202 (9%), Positives = 60/202 (29%), Gaps = 29/202 (14%)
Query: 247 SLKFQRERITYIHLPLQSKWLYVGTEKGNIHVVNIESFTLSGYIINWNKAIDVCMKTHPG 306
+ K+++E I + + V + + ++ +++E + +T
Sbjct: 80 TFKWEKEIPDVIFVCFHGDQVLV-STRNALYSLDLEELSEF--------------RTVTS 124
Query: 307 PIIHLSDNPLDPSKLLLAYETGLVVHWDLKLKRAEFRWQCSEPIKSVCWHYEGKQFLCSH 366
+ + L++ + DL+ K + + Q
Sbjct: 125 FEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTK-----QLAQNVTSFDVTNSQLAVLL 179
Query: 367 TDGTISTWAVRPLAKPVSVNQPHIKTNKDGKLEQCKPIQKVEWKHSRSGEGFVIFSGGLT 426
D + ++A R ++ +E+ P+ V S + F+
Sbjct: 180 KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLS-VTIL---SPQDFLA-----V 230
Query: 427 YDKAGRSPSISVMHNKTTTVLE 448
+ V +++ +++
Sbjct: 231 FGNVISETDDEVSYDQKMYIIK 252
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit;
lissencephaly, platelet activacting factor, regulator of
cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Length = 410
Score = 32.2 bits (74), Expect = 0.47
Identities = 16/85 (18%), Positives = 26/85 (30%), Gaps = 24/85 (28%)
Query: 504 HESPVTCCVYLADCPSDLIPAFYSVGARGASKRTGFSEKEWPLSGGEWSPTSCSYYEVIL 563
H V C + + + + SE + G + +L
Sbjct: 275 HRHVVECISWAPE------------SSYSSISEATGSETKKSGKPGPF----------LL 312
Query: 564 TGHADGSVKFWDASAGNLQVLYKLK 588
+G D ++K WD S G L L
Sbjct: 313 SGSRDKTIKMWDVSTG--MCLMTLV 335
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A
{Saccharomyces cerevisiae}
Length = 369
Score = 31.8 bits (73), Expect = 0.57
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAG 579
WS + I+ GH DG + +D S
Sbjct: 183 WSTKG----KYIIAGHKDGKISKYDVSNN 207
Score = 28.7 bits (65), Expect = 5.7
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 562 ILTGHADGSVKFWDASAGNLQVLYKLKTP 590
+T D + D S QVL K +T
Sbjct: 233 FITSSRDTNSFLVDVSTL--QVLKKYETD 259
Score = 28.3 bits (64), Expect = 8.3
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 349 PIKSVCWHYEGKQFLCSHTDGTISTW 374
W +GK + H DG IS +
Sbjct: 177 AATVAGWSTKGKYIIAGHKDGKISKY 202
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A
{Homo sapiens}
Length = 368
Score = 31.9 bits (73), Expect = 0.62
Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 17/87 (19%)
Query: 504 HESPVTCCVYLADCPSDLIPAFYSVGARGASKR----TGFSEKEWPLSGGEWSPTSCSYY 559
H PV + D + ++ +K + + ++ + + +
Sbjct: 85 HTGPVLDVCWSDD--GSKV---FTASCDKTAKMWDLSSN---QAIQIAQHDAPVKTIHWI 136
Query: 560 E-----VILTGHADGSVKFWDASAGNL 581
+ ++TG D ++KFWD + N
Sbjct: 137 KAPNYSCVMTGSWDKTLKFWDTRSSNP 163
Score = 30.7 bits (70), Expect = 1.4
Identities = 44/263 (16%), Positives = 76/263 (28%), Gaps = 69/263 (26%)
Query: 347 SEPIKSVCWHYEGKQ-FLCSHTDGTISTWAVRPLAKPVSVNQPHIKTNKDGKLEQ-CKPI 404
+ P+ VCW +G + F S D T W + +N+ ++ Q P+
Sbjct: 86 TGPVLDVCWSDDGSKVFTASC-DKTAKMW--------------DLSSNQAIQIAQHDAPV 130
Query: 405 QKVEWKHSRSGEGFVIFSGGLTYDKA-----GRSPSISVMHNKTTTVLEMEHNVVDFVTL 459
+ + W ++ + +G +DK RS VL++ +
Sbjct: 131 KTIHW--IKAPNYSCVMTGS--WDKTLKFWDTRSS-------NPMMVLQLPERCYCADVI 179
Query: 460 CESPYICEMQEPYAIVVLLHNDLVVIDLLTPGFPCFENPYPMDIHESPVTCCVYLADCPS 519
P A+V L+V L P + C D
Sbjct: 180 Y----------PMAVVATAERGLIVYQLENQPSEFRRIESP---LKHQHRCVAIFKD--K 224
Query: 520 DLIPAFYSVG-----------ARGASKRTGFSEKEWPLSGGEWSPTSCSY---------- 558
P +++G + F+ K +G S Y
Sbjct: 225 QNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPV 284
Query: 559 YEVILTGHADGSVKFWDASAGNL 581
+ + T +DG FWD A
Sbjct: 285 HGTLATVGSDGRFSFWDKDARTK 307
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori
complex, nuclear pore complex, macromolecular assembly,
MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A
3f3p_A 3ewe_A
Length = 351
Score = 31.1 bits (71), Expect = 0.86
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAG 579
W+P+ +Y++I TG DG ++ + +
Sbjct: 222 WAPSIGRWYQLIATGCKDGRIRIFKITEK 250
Score = 30.0 bits (68), Expect = 2.0
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGNLQVLYKLK 588
W P S E + + ++ + G L V KL
Sbjct: 175 WCP-SRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLP 211
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller,
structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1
PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C*
2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Length = 372
Score = 30.7 bits (70), Expect = 1.2
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGNLQVLYKLK 588
+ T DG + WD + L LK
Sbjct: 334 VLSGGKAKCSQFCTTGMDGGMSIWDVRSLE-SALKDLK 370
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A
{Saccharomyces cerevisiae}
Length = 330
Score = 30.6 bits (70), Expect = 1.5
Identities = 6/38 (15%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGNLQVLYKLK 588
W P+ ++ + D +V+ W + + + L
Sbjct: 161 WHPSE----ALLASSSYDDTVRIWKDYDDDWECVAVLN 194
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 2.8
Identities = 76/588 (12%), Positives = 157/588 (26%), Gaps = 166/588 (28%)
Query: 16 DPIQKLLAIGTKTGSLRLLGRPGVDAHVR--HETDAAVI--QMQFLTNEGALITATADDS 71
D + L + +L V V + + ++ + +++T +
Sbjct: 59 DAVSGTLRL---FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 72 LH-LWNFRQK-------RPEIVHSLK-----FQRERITYIH-----------------LP 101
L+N Q R + L+ + + I
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 102 LQSK------WLYVGTEKGNIHVVNIESFTLSGYIINWNKAIDVCMKTHPGPIIHLSDNP 155
+Q K WL + V+ + L NW D H I +
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-----HSSNIKLRIHSI 230
Query: 156 LDPSKTFRHGFPYQ-----------PTAI-AFDPIQ-KLLAIGTKTGSLRLLGRPGVDAH 202
+ PY+ A AF+ + K+L T+ + H
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLT-TRFKQVTDFLSAATTTH 288
Query: 203 VR----------HETD---AAVIQMQF--LTNEG--------ALITATADDSLHLW-NFR 238
+ E + + L E ++I + D L W N++
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 239 Q-KRPEIVHSLKFQRERITYIHL-PLQSKWLYVGTEKGNIHV----VNIESFTLSGYIIN 292
++ ++ + L P + + ++ + V +I + LS +
Sbjct: 349 HVNCDKLTTIIE-----SSLNVLEPAEYRKMFD-----RLSVFPPSAHIPTILLS---LI 395
Query: 293 WNKAIDVCMKTHPGPIIHLSDNPLDPSKLLLA---YETGLVVHWDLKLKRAEFRWQCSEP 349
W I +++ L+ E+ + + + L E + +
Sbjct: 396 WFDVIKSD----VMVVVNKLHK-----YSLVEKQPKESTISIP-SIYL---ELKVKLENE 442
Query: 350 I---KSVCWHYEGKQFLCSHT------DGTISTWAVRPLAKPVSVNQPHIKT-NKDGKLE 399
+S+ HY + S D + H+K ++
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH-----------HLKNIEHPERMT 491
Query: 400 QCKPI--------QKVEWKHSRSGEGFVIFSGGLTYDKAGRSPSISVMHNKTTTVLEMEH 451
+ + QK+ +H + P I K + +
Sbjct: 492 LFRMVFLDFRFLEQKI--RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYE---RLVN 546
Query: 452 NVVDFVTLCESPYICEMQEPYAIVVLLHNDLVVIDLLTPGFPCFENPY 499
++DF+ E IC + DL+ I L+ FE +
Sbjct: 547 AILDFLPKIEENLICSK----------YTDLLRIALMAEDEAIFEEAH 584
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 29.5 bits (67), Expect = 3.5
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGNLQ 582
WSP I + AD ++K W+ + ++
Sbjct: 247 WSPDG----TKIASASADKTIKIWNVATLKVE 274
Score = 28.7 bits (65), Expect = 5.8
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGNLQVLYKL 587
WSP + + TG D SV W+ + + +
Sbjct: 544 WSPDN----VRLATGSLDNSVIVWNMNKPSDHPIIIK 576
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic
cleavage, mRNA transport, nuclear pore complex, nucleus,
phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Length = 316
Score = 29.2 bits (66), Expect = 3.5
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGNLQ 582
W+P+ I + DG V W +
Sbjct: 220 WAPSIGLPTSTIASCSQDGRVFIWTCDDASSN 251
Score = 28.8 bits (65), Expect = 5.1
Identities = 9/45 (20%), Positives = 13/45 (28%), Gaps = 16/45 (35%)
Query: 551 WSPT-------SCSYYEVILTGHADGSVKFWDASAGNLQVLYKLK 588
W+ SCSY D V W G + ++
Sbjct: 65 WAHPMYGNILASCSY---------DRKVIIWREENGTWEKSHEHA 100
Score = 28.4 bits (64), Expect = 7.5
Identities = 13/45 (28%), Positives = 16/45 (35%), Gaps = 9/45 (20%)
Query: 343 RWQCSEP-------IKSVCW--HYEGKQFLCSHTDGTISTWAVRP 378
W+ S + SVCW H G C +DG IS
Sbjct: 92 TWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTG 136
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed
beta-propeller, protein binding; 2.30A {Saccharomyces
cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Length = 615
Score = 29.5 bits (67), Expect = 3.6
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 562 ILTGHADGSVKFWDASAGNLQVLYKLKT 589
T AD +++ WD + + L
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDK 294
Score = 29.1 bits (66), Expect = 4.9
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAG 579
+SP S Y + +G G V W +
Sbjct: 72 FSPIKGSQY--LCSGDESGKVIVWGWTFD 98
Score = 28.7 bits (65), Expect = 5.6
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 536 RTGFSEKEWPLSGGEWSPTSCSYY----EVILTGHADGSVKFWDASAGN-LQVLY 585
T ++W L + I++ DG++ F++ L+ +
Sbjct: 282 TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTIS 336
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat,
biosynthetic prote structural genomics, structural
genomics consortium; 1.70A {Homo sapiens}
Length = 345
Score = 29.1 bits (66), Expect = 4.6
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGNLQVLYKLK 588
W P+ E++ + D +VK + + L+
Sbjct: 158 WHPSQ----ELLASASYDDTVKLYREEEDDWVCCATLE 191
Score = 28.7 bits (65), Expect = 5.7
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGNLQVLYKLK 588
WSP + + D + W + + + + L+
Sbjct: 69 WSPCG----NYLASASFDATTCIWKKNQDDFECVTTLE 102
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics,
structural genomic consortium, SGC, apoptosis,
transcription; 1.95A {Homo sapiens}
Length = 357
Score = 28.9 bits (65), Expect = 5.0
Identities = 5/23 (21%), Positives = 11/23 (47%)
Query: 562 ILTGHADGSVKFWDASAGNLQVL 584
+ G+ +G +K +D L+
Sbjct: 183 VCAGYDNGDIKLFDLRNMALRWE 205
Score = 28.1 bits (63), Expect = 8.3
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGNLQVL 584
W P S + + G ++ ++ G+L++L
Sbjct: 26 WVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL 59
Score = 28.1 bits (63), Expect = 9.8
Identities = 7/27 (25%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 562 ILTGHADGSVKFWDASAGNLQVLYKLK 588
+ TG G++ W+ A +Y +K
Sbjct: 83 LATGDFGGNLHIWNLEAPE-MPVYSVK 108
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat
protein TRM82; S-adenosyl-L-methionine, tRNA processing,
phosphorylation, M7G, spout MT, WD repeat; 2.40A
{Saccharomyces cerevisiae}
Length = 450
Score = 28.5 bits (63), Expect = 7.2
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 21/107 (19%)
Query: 3 RHGFPYQPTAIAFDPIQKLLAIGTKTGSLRLLGRPGVDA----------HVRHETDAAVI 52
R F +P AI+ + I K G + + + HV TD +I
Sbjct: 145 RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI 204
Query: 53 QMQFLTNEGALITATADDSLHLWNFRQKRP---------EIVHSLKF 90
+ +IT+ D+ + + ++ Q V S+
Sbjct: 205 KDS--DGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICC 249
Score = 28.5 bits (63), Expect = 7.2
Identities = 19/107 (17%), Positives = 35/107 (32%), Gaps = 21/107 (19%)
Query: 163 RHGFPYQPTAIAFDPIQKLLAIGTKTGSLRLLGRPGVDA----------HVRHETDAAVI 212
R F +P AI+ + I K G + + + HV TD +I
Sbjct: 145 RFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLI 204
Query: 213 QMQFLTNEGALITATADDSLHLWNFRQKRP---------EIVHSLKF 250
+ +IT+ D+ + + ++ Q V S+
Sbjct: 205 KDS--DGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICC 249
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural
protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Length = 402
Score = 28.5 bits (64), Expect = 7.8
Identities = 10/48 (20%), Positives = 14/48 (29%), Gaps = 3/48 (6%)
Query: 333 WDLK--LKRAEFRWQC-SEPIKSVCWHYEGKQFLCSHTDGTISTWAVR 377
WD+ + I SV W +G S D + R
Sbjct: 159 WDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPR 206
Score = 28.1 bits (63), Expect = 9.2
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 550 EWSPTSCSYYEVILTGHADGSVKFWDASAGNLQVLYKLKTP 590
W PT+ + V+L+ D + WD G + L
Sbjct: 138 AWHPTAQN---VLLSAGCDNVILVWDVGTG--AAVLTLGPD 173
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone,
RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Length = 420
Score = 28.4 bits (64), Expect = 8.0
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 562 ILTGHADGSVKFWDASAGN 580
++ GH G + + +
Sbjct: 262 VIAGHVSGVITVHNVFSKE 280
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage
repair; HET: DNA; 3.31A {Homo sapiens}
Length = 408
Score = 28.4 bits (64), Expect = 8.1
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 551 WSPTSCSYYEVILTGHADGSVKFWDASAGNLQVLYKLKTPW 591
P Y +L+G +DG + +D + Q Y K
Sbjct: 51 IEPVEGRY---MLSGGSDGVIVLYDLENSSRQSYYTCKAVC 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor,
actin-binding, ATP-binding, cytoskeleton, nucleot
binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces
pombe}
Length = 377
Score = 28.2 bits (63), Expect = 8.2
Identities = 2/29 (6%), Positives = 11/29 (37%)
Query: 348 EPIKSVCWHYEGKQFLCSHTDGTISTWAV 376
+P ++ + +F+ + + +
Sbjct: 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQ 40
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 27.9 bits (63), Expect = 9.4
Identities = 1/41 (2%), Positives = 3/41 (7%), Gaps = 4/41 (9%)
Query: 545 PLSGGEWSPTSCSY----YEVILTGHADGSVKFWDASAGNL 581
+ G +
Sbjct: 152 CDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGT 192
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A
{Saccharomyces cerevisiae}
Length = 313
Score = 27.9 bits (63), Expect = 9.4
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 562 ILTGHADGSVKFWDASAGNLQVLYKLK 588
I+ G +D V+ + ++K
Sbjct: 280 IIVGSSDNLVRIFSQEKSRWASEDEIK 306
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.137 0.438
Gapped
Lambda K H
0.267 0.0860 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,313,370
Number of extensions: 565044
Number of successful extensions: 1473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1421
Number of HSP's successfully gapped: 208
Length of query: 591
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 492
Effective length of database: 3,937,614
Effective search space: 1937306088
Effective search space used: 1937306088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.7 bits)