Query psy7100
Match_columns 76
No_of_seqs 36 out of 38
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 18:11:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7100.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7100hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9l_A Granulysin; saposin fol 41.5 21 0.00071 21.1 2.6 21 14-35 5-25 (74)
2 2lwd_A Probable ATP-dependent 32.8 57 0.0019 20.4 3.7 45 14-62 40-86 (100)
3 1nkl_A NK-lysin; saposin fold, 25.7 59 0.002 18.7 2.7 21 14-34 5-25 (78)
4 3nme_A Ptpkis1 protein, SEX4 g 24.8 37 0.0013 24.2 2.0 25 21-45 261-288 (294)
5 3lwd_A 6-phosphogluconolactona 24.6 1E+02 0.0034 21.2 4.2 29 3-31 5-33 (226)
6 2gtg_A Proactivator polypeptid 23.9 67 0.0023 18.2 2.7 21 14-34 8-28 (83)
7 4a2q_A RIG-I, retinoic acid in 23.9 37 0.0013 26.9 2.0 39 13-56 34-72 (797)
8 2q37_A OHCU decarboxylase; 2-O 23.4 98 0.0033 21.2 3.9 29 17-45 141-169 (181)
9 2o8i_A AGR_C_4230P, hypothetic 22.5 1.2E+02 0.004 20.3 4.1 29 17-45 125-153 (165)
10 4ddj_A Saposin-A, protein A; s 22.0 95 0.0033 17.5 3.1 21 14-34 7-27 (83)
11 2qho_B E3 ubiquitin-protein li 21.5 60 0.0021 18.9 2.1 45 14-69 7-52 (53)
12 3o7i_A OHCU decarboxylase; lya 20.9 1.2E+02 0.004 21.0 3.9 29 17-45 150-178 (189)
13 2o70_A OHCU decarboxylase; URI 20.7 1.2E+02 0.0041 20.4 3.9 29 17-45 129-157 (174)
No 1
>1l9l_A Granulysin; saposin fold, membrane-lytic, antimicrobial protein; HET: MPO; 0.92A {Homo sapiens} SCOP: a.64.1.1
Probab=41.46 E-value=21 Score=21.06 Aligned_cols=21 Identities=14% Similarity=0.196 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHhhcCcHHHH
Q psy7100 14 HVSRLMVTKVCQRASNQSTEIA 35 (76)
Q Consensus 14 ~vs~~lv~EIr~ras~k~tE~A 35 (76)
.+|..+|+++...+ +.+||+.
T Consensus 5 ~~C~~~v~~le~~l-~n~Te~~ 25 (74)
T 1l9l_A 5 RTCLTIVQKLKKMV-DKPTQRS 25 (74)
T ss_dssp HHHHHHHHHHHHHC-SSCCHHH
T ss_pred hHHHHHHHHHHHHh-cccCHHH
Confidence 46888999999999 8888754
No 2
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=32.76 E-value=57 Score=20.43 Aligned_cols=45 Identities=16% Similarity=0.173 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHhhhhcccccchhHH--HHHHHH
Q psy7100 14 HVSRLMVTKVCQRASNQSTEIASCAIAKFLEIENSEESSSGWM--LLSTLN 62 (76)
Q Consensus 14 ~vs~~lv~EIr~ras~k~tE~A~~ai~~fL~~~~~e~~~~Gwl--LLksv~ 62 (76)
-++..=+.+|+....+++..+|..-+.+.|.. ++ ..||- +++++.
T Consensus 40 ~L~~~d~E~I~a~~~~~G~~~aa~~LL~~L~r--~~--~~gWf~~fl~AL~ 86 (100)
T 2lwd_A 40 CLINQECEEILQICSTKGMMAGAEKLVECLLR--SD--KENWPKTLKLALE 86 (100)
T ss_dssp TSCHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CC--CTHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHccChHHHHHHHHHHHHh--cC--cCCcHHHHHHHHH
Confidence 44566789999999999999988888887754 22 35883 555554
No 3
>1nkl_A NK-lysin; saposin fold, antibacterial peptide, tumourolytic peptide; NMR {Sus scrofa} SCOP: a.64.1.1
Probab=25.71 E-value=59 Score=18.70 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhcCcHHH
Q psy7100 14 HVSRLMVTKVCQRASNQSTEI 34 (76)
Q Consensus 14 ~vs~~lv~EIr~ras~k~tE~ 34 (76)
.+|..+|+.+.+.+.+.+|++
T Consensus 5 ~~C~~iv~~ve~~l~~~~t~~ 25 (78)
T 1nkl_A 5 ESCRKIIQKLEDMVGPQPNED 25 (78)
T ss_dssp HHHHHHHHHHHHHHCSSCCHH
T ss_pred hHHHHHHHHHHHHHHcCCcHH
Confidence 478889999999998877654
No 4
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=24.77 E-value=37 Score=24.21 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=21.8
Q ss_pred HHHHHHhhcCc---HHHHHHHHHHHhhh
Q psy7100 21 TKVCQRASNQS---TEIASCAIAKFLEI 45 (76)
Q Consensus 21 ~EIr~ras~k~---tE~A~~ai~~fL~~ 45 (76)
+++|+|+.+.. |++.|.-|-+||+-
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (294)
T 3nme_A 261 GTTRERLSSEDPELLEEERSKLIQFLET 288 (294)
T ss_dssp TTHHHHHSSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCccccHHHHHHHHHHHHh
Confidence 67899998876 79999999999985
No 5
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=24.62 E-value=1e+02 Score=21.23 Aligned_cols=29 Identities=0% Similarity=0.092 Sum_probs=24.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Q psy7100 3 DKFRDVHQFCDHVSRLMVTKVCQRASNQS 31 (76)
Q Consensus 3 ~~F~~i~~fa~~vs~~lv~EIr~ras~k~ 31 (76)
..|++-..++..+++.+++.|++.+..++
T Consensus 5 ~i~~~~~~l~~~~A~~i~~~i~~~i~~~~ 33 (226)
T 3lwd_A 5 TTQEGRQRLAERLADTVAQALEADLAKRE 33 (226)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 46889999999999999999988876553
No 6
>2gtg_A Proactivator polypeptide; saposin, sphingolipid activator protein, lipid-binding prote binding protein; 2.40A {Homo sapiens} SCOP: a.64.1.1 PDB: 1m12_A 1sn6_A
Probab=23.94 E-value=67 Score=18.15 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhhcCcHHH
Q psy7100 14 HVSRLMVTKVCQRASNQSTEI 34 (76)
Q Consensus 14 ~vs~~lv~EIr~ras~k~tE~ 34 (76)
.+|..+|++|.+.+.+..|++
T Consensus 8 ~~C~~~v~~i~~~l~~~~t~~ 28 (83)
T 2gtg_A 8 EVCEFLVKEVTKLIDNNKTEK 28 (83)
T ss_dssp HHHHHHHHHHHHHHHTTCCHH
T ss_pred hhHHHHHHHHHHHHHcCCcHH
Confidence 367888999999998777653
No 7
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=23.87 E-value=37 Score=26.87 Aligned_cols=39 Identities=13% Similarity=0.262 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhhcCcHHHHHHHHHHHhhhhcccccchhHH
Q psy7100 13 DHVSRLMVTKVCQRASNQSTEIASCAIAKFLEIENSEESSSGWM 56 (76)
Q Consensus 13 ~~vs~~lv~EIr~ras~k~tE~A~~ai~~fL~~~~~e~~~~Gwl 56 (76)
..++.-.++.||+.. |++.-+|+....+++.. ++ ..||-
T Consensus 34 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~--~~~~~ 72 (797)
T 4a2q_A 34 DWLPDELRERIRKEE-ERGVSGAAALFLDAVLQ--LE--ARGWF 72 (797)
T ss_dssp TTSCHHHHHHHHHHH-HHCHHHHHHHHHHHHHT--CC--STTHH
T ss_pred hhcCHHHHHHHHHHh-hcCcHHHHHHHHHHHHh--cC--CCcHH
Confidence 667788899999999 99988888888888763 23 57994
No 8
>2q37_A OHCU decarboxylase; 2-OXO-4-hydroxy-4-carboxy-5-ureidoimidazoline, plant protein, lyase; HET: 3AL; 2.50A {Arabidopsis thaliana} SCOP: a.288.1.1
Probab=23.41 E-value=98 Score=21.20 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHhhh
Q psy7100 17 RLMVTKVCQRASNQSTEIASCAIAKFLEI 45 (76)
Q Consensus 17 ~~lv~EIr~ras~k~tE~A~~ai~~fL~~ 45 (76)
..+..++++|+.|-+.+|-+.|+.+.-+|
T Consensus 141 ~~IL~~l~~RL~N~~~~E~~~Al~Ev~kI 169 (181)
T 2q37_A 141 AEMLHALKERYENRPIVELEIAAMEQMKI 169 (181)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45678999999999999999999988776
No 9
>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium tumefaciens STR. C58, structural GENO PSI-2, protein structure initiative; 2.60A {Agrobacterium tumefaciens str} SCOP: a.288.1.1
Probab=22.47 E-value=1.2e+02 Score=20.30 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHhhh
Q psy7100 17 RLMVTKVCQRASNQSTEIASCAIAKFLEI 45 (76)
Q Consensus 17 ~~lv~EIr~ras~k~tE~A~~ai~~fL~~ 45 (76)
..+..++++|+.|-+.+|-+.|+.+.-+|
T Consensus 125 ~~Il~~l~~Rl~nd~~~E~~~a~~e~~kI 153 (165)
T 2o8i_A 125 HDILSAFDTRIDNNAAQEFATATGQVEKI 153 (165)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45678999999999999999999987766
No 10
>4ddj_A Saposin-A, protein A; saposin fold, sphingolipid activator protein, galactosylcera lauryldimethylamine-N-oxide, lipid, detergent, lysosome; HET: LDA; 1.90A {Homo sapiens} PDB: 2dob_A*
Probab=21.99 E-value=95 Score=17.53 Aligned_cols=21 Identities=19% Similarity=0.208 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhcCcHHH
Q psy7100 14 HVSRLMVTKVCQRASNQSTEI 34 (76)
Q Consensus 14 ~vs~~lv~EIr~ras~k~tE~ 34 (76)
.+|..+|+++++-+.+..||+
T Consensus 7 ~~C~~~v~~~~~~l~~n~t~~ 27 (83)
T 4ddj_A 7 DICKDVVTAAGDMLKDNATEE 27 (83)
T ss_dssp HHHHHHHHHHHHHHHSTTHHH
T ss_pred hHHHHHHHHHHHHHHcCccHH
Confidence 468888999999998888764
No 11
>2qho_B E3 ubiquitin-protein ligase EDD1; protein-protein complex, protein binding/ligase complex; 1.85A {Homo sapiens}
Probab=21.52 E-value=60 Score=18.85 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHhhhhcccccchhHHHHHHHH-HHhcCCc
Q psy7100 14 HVSRLMVTKVCQRASNQSTEIASCAIAKFLEIENSEESSSGWMLLSTLN-LLAAGDV 69 (76)
Q Consensus 14 ~vs~~lv~EIr~ras~k~tE~A~~ai~~fL~~~~~e~~~~GwlLLksv~-lLs~~d~ 69 (76)
+|-.-++.+.|..+.||| |..|..=|+..+-+. =-+|| |||.+|.
T Consensus 7 ~vPe~li~q~q~VLqgks----R~vIirELqrTnLdV-------N~AvNNlLsRDd~ 52 (53)
T 2qho_B 7 VIPEELISQAQVVLQGKS----RSVIIRELQRTNLDV-------NLAVNNLLSRDDE 52 (53)
T ss_dssp GSCHHHHHHHHHHSTTCC----HHHHHHHHHHTTTCH-------HHHHHHHHC----
T ss_pred cCcHHHHHHHHHHhcCCc----HHHHHHHHHHhCccH-------HHHHHHHhccccC
Confidence 344567888999999998 456667777643222 24566 7777664
No 12
>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB: 3o7h_A 3o7j_A* 3o7k_A
Probab=20.94 E-value=1.2e+02 Score=21.00 Aligned_cols=29 Identities=21% Similarity=0.299 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHhhh
Q psy7100 17 RLMVTKVCQRASNQSTEIASCAIAKFLEI 45 (76)
Q Consensus 17 ~~lv~EIr~ras~k~tE~A~~ai~~fL~~ 45 (76)
..+..++++|+.|-+.+|-+.|+.+.-+|
T Consensus 150 ~~IL~~l~~Rl~nd~e~E~~~Al~Ev~kI 178 (189)
T 3o7i_A 150 EEILQALTRRLQHTADEEVAEALAQLREI 178 (189)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 45678999999999999999999987666
No 13
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1 PDB: 2o73_A* 2o74_A*
Probab=20.72 E-value=1.2e+02 Score=20.37 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHhhh
Q psy7100 17 RLMVTKVCQRASNQSTEIASCAIAKFLEI 45 (76)
Q Consensus 17 ~~lv~EIr~ras~k~tE~A~~ai~~fL~~ 45 (76)
..+..++++|+.|-+.+|-+.|+.+.-+|
T Consensus 129 ~~IL~~l~~Rl~n~~~~E~~~a~~ev~kI 157 (174)
T 2o70_A 129 ADIVRQLSERLKNRRTAELECAIEEVKKI 157 (174)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45778999999999999999999988776
Done!