RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7100
         (76 letters)



>gnl|CDD|220372 pfam09737, Det1, De-etiolated protein 1 Det1.  This is the
           C-terminal conserved 400 residues of Det1 proteins of
           approximately 550 amino acids. Det1 (de-etiolated-1) is
           an essential negative regulator of plant light
           responses, and it is a component of the Arabidopsis CDD
           complex containing DDB1 and COP10 ubiquitin E2 variant.
           Mammalian Det1 forms stable DDD-E2 complexes, consisting
           of DDB1, DDA1 (DET1, DDB1 Associated 1), and a member of
           the UBE2E group of canonical ubiquitin conjugating
           enzymes and modulates Cul4A function.
          Length = 407

 Score = 27.8 bits (62), Expect = 0.47
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 1/61 (1%)

Query: 10  QFCDHVSRLMVTKVCQRASNQSTEIASCAIAKFLEIENSEESSSGWMLLSTLNLLAAGDV 69
           QFCD      +       S+ S    +  I +  +         G    +   LLA+  +
Sbjct: 251 QFCDSFRNASLHSTTNFRSSHSGNAYALPIHRRFKQTIINARGGG-HREAAKRLLASLPI 309

Query: 70  S 70
           S
Sbjct: 310 S 310


>gnl|CDD|176142 cd08451, PBP2_BudR, The C-terminal substrate binding domain of
           LysR-type transcrptional regulator BudR, which is
           responsible for activation of the expression of the
           butanediol operon genes; contains the type 2 periplasmic
           binding fold.  This CD represents the substrate binding
           domain of BudR regulator, which is responsible for
           induction of the butanediol formation pathway under
           fermentative growth conditions. Three enzymes are
           involved in the production of 1 mol of 2,3 butanediol
           from the condensation of 2 mol of pyruvate with
           acetolactate and acetoin as intermediates: acetolactate
           synthetase, acetolactate decarboxylase, and acetoin
           reductase. In Klebsiella terrigena, BudR regulates the
           expression of the budABC operon genes, encoding these
           three enzymes of the butanediol pathway. In many
           bacterial species, the use of this pathway can prevent
           intracellular acidification by diverting metabolism from
           acid production to the formation of neutral compounds
           (acetoin and butanediol). This substrate-binding domain
           has significant homology to the type 2 periplasmic
           binding proteins (PBP2), which are responsible for the
           uptake of a variety of substrates such as phosphate,
           sulfate, polysaccharides, lysine/arginine/ornithine, and
           histidine. The PBP2 bind their ligand in the cleft
           between these domains in a manner resembling a Venus
           flytrap. After binding their specific ligand with high
           affinity, they can interact with a cognate membrane
           transport complex comprised of two integral membrane
           domains and two cytoplasmically located ATPase domains.
           This interaction triggers the ligand translocation
           across the cytoplasmic membrane energized by ATP
           hydrolysis.
          Length = 199

 Score = 25.6 bits (57), Expect = 2.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)

Query: 34  IASCAIAKFLEIENSEESSSGWMLLSTLNLLAAG-DVSLV 72
           IA+C  A F      +E+     + S +NL+AAG  VS+V
Sbjct: 118 IAACRRAGF-TPRIGQEAPQ---MASAINLVAAGLGVSIV 153


>gnl|CDD|236180 PRK08190, PRK08190, bifunctional enoyl-CoA hydratase/phosphate
           acetyltransferase; Validated.
          Length = 466

 Score = 25.6 bits (57), Expect = 2.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 26  RASNQSTEIASCAIAKFL 43
           RA +    +ASCA+A  +
Sbjct: 439 RADSLRARLASCALALLV 456


>gnl|CDD|183361 PRK11890, PRK11890, phosphate acetyltransferase; Provisional.
          Length = 312

 Score = 25.3 bits (56), Expect = 2.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 26  RASNQSTEIASCAIAKFL 43
           RA +  T +ASCA+A  +
Sbjct: 285 RADSVRTRLASCAVAALV 302


>gnl|CDD|184242 PRK13685, PRK13685, hypothetical protein; Provisional.
          Length = 326

 Score = 25.0 bits (55), Expect = 4.2
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 50  ESSSGWMLLSTLNLLAAGDVSLV 72
           ++S GW+ L  L L  A   +L+
Sbjct: 298 DASVGWLRLGALVLALAALAALL 320


>gnl|CDD|211586 TIGR00558, pdxH, pyridoxamine-phosphate oxidase.  This model is
           similar to Pyridox_oxidase from PFAM but is designed to
           find only true pyridoxamine-phosphate oxidase and to
           ignore the related protein PhzG involved in phenazine
           biosynthesis. This protein from E. coli was
           characterized as a homodimer with two FMN per dimer
           [Biosynthesis of cofactors, prosthetic groups, and
           carriers, Pyridoxine].
          Length = 190

 Score = 24.8 bits (55), Expect = 4.9
 Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)

Query: 27  ASNQSTEIASCAI--AKFLEIEN 47
           AS QS  IAS      +F E++ 
Sbjct: 114 ASQQSRPIASREELEERFAELKA 136


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.317    0.126    0.357 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,379,998
Number of extensions: 224616
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 6
Length of query: 76
Length of database: 10,937,602
Length adjustment: 46
Effective length of query: 30
Effective length of database: 8,897,318
Effective search space: 266919540
Effective search space used: 266919540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)