RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7100
         (76 letters)



>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle
          domain {Cow (Bos taurus) [TaxId: 9913]}
          Length = 150

 Score = 23.3 bits (50), Expect = 3.8
 Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 3/28 (10%)

Query: 18 LMVTKVCQRASNQSTEIASCAIAKFLEI 45
          ++V + CQ   N     AS  + KF  +
Sbjct: 37 MLVARTCQLYPNAI---ASTLVHKFFLV 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.126    0.357 

Gapped
Lambda     K      H
   0.267   0.0617    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 241,425
Number of extensions: 7332
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 2
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)