BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7101
(130 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q76MT4|ESF1_RAT ESF1 homolog OS=Rattus norvegicus GN=Esf1 PE=1 SV=1
Length = 842
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/115 (42%), Positives = 71/115 (61%), Gaps = 17/115 (14%)
Query: 2 KLLSPLELVEQSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVY 61
++ P+EL+ S E++ E + REKLR YQ RLKYYYAVV DS E+A+K+Y
Sbjct: 390 QIQGPVELL-------SIPEDAPEKDWASREKLRDYQFKRLKYYYAVVECDSPETASKIY 442
Query: 62 TECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQ 116
+CDG+E+ESS + +DLRF+PDD FD+ P ++S + DL + P+
Sbjct: 443 EDCDGLEFESSCSFIDLRFIPDDITFDDE------PKDAASEV----DLTAYKPK 487
>sp|Q9H501|ESF1_HUMAN ESF1 homolog OS=Homo sapiens GN=ESF1 PE=1 SV=1
Length = 851
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/88 (50%), Positives = 61/88 (69%), Gaps = 7/88 (7%)
Query: 2 KLLSPLELVEQSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVY 61
++ P+EL+ S E++ E + REKLR YQ RLKYYYAVV DS E+A+K+Y
Sbjct: 398 QVQGPVELL-------SIPEDAPEKDWTSREKLRDYQFKRLKYYYAVVDCDSPETASKIY 450
Query: 62 TECDGMEYESSATRVDLRFVPDDTEFDE 89
+CDG+E+ESS + +DLRF+PDD FD+
Sbjct: 451 EDCDGLEFESSCSFIDLRFIPDDITFDD 478
>sp|Q3V1V3|ESF1_MOUSE ESF1 homolog OS=Mus musculus GN=Esf1 PE=1 SV=1
Length = 845
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 43/85 (50%), Positives = 58/85 (68%), Gaps = 7/85 (8%)
Query: 5 SPLELVEQSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTEC 64
P+EL+ S E++ E + REKLR YQ RLKYYYAV DS E+A+K+Y +C
Sbjct: 395 GPVELL-------SIPEDAPEKDWASREKLRDYQFKRLKYYYAVAECDSPETASKIYEDC 447
Query: 65 DGMEYESSATRVDLRFVPDDTEFDE 89
DG+E+ESS + +DLRF+PDD FD+
Sbjct: 448 DGLEFESSCSFIDLRFIPDDITFDD 472
>sp|O74828|ESF1_SCHPO Pre-rRNA-processing protein esf1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=esf1 PE=1 SV=1
Length = 682
Score = 83.2 bits (204), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 45/64 (70%)
Query: 26 GNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDT 85
GN + KLRQYQL RL+YYYAVV DS +A +Y CDG EYE+SA DLRF+PDD
Sbjct: 278 GNEFDMVKLRQYQLERLRYYYAVVECDSVRTAKVIYETCDGAEYETSANIYDLRFIPDDV 337
Query: 86 EFDE 89
FD+
Sbjct: 338 TFDD 341
>sp|Q299G2|CYFIP_DROPS Cytoplasmic FMR1-interacting protein OS=Drosophila pseudoobscura
pseudoobscura GN=Sra-1 PE=3 SV=1
Length = 1291
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 89 EHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
+HFD KWPLSSS+ ISPQADLMVHLPQIR+DH+KYISELAR
Sbjct: 323 KHFDSSKWPLSSSNAISPQADLMVHLPQIREDHVKYISELAR 364
>sp|Q9VF87|CYFIP_DROME Cytoplasmic FMR1-interacting protein OS=Drosophila melanogaster
GN=Sra-1 PE=1 SV=1
Length = 1291
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 89 EHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
+HFD KWPLSSS+ ISPQADLMVHLPQIR+DH+KYISELAR
Sbjct: 323 KHFDSSKWPLSSSNAISPQADLMVHLPQIREDHVKYISELAR 364
>sp|Q756J5|ESF1_ASHGO Pre-rRNA-processing protein ESF1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=ESF1
PE=3 SV=2
Length = 619
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 42/62 (67%)
Query: 29 YHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFD 88
Y + LR+YQL RL+YYYAVV ++ +A +Y CDG EYES+A DLR+VP+ FD
Sbjct: 241 YDSKALRRYQLERLRYYYAVVYCNNVATAEAIYQNCDGTEYESTANMFDLRYVPEGVTFD 300
Query: 89 EH 90
+
Sbjct: 301 DE 302
>sp|Q06344|ESF1_YEAST Pre-rRNA-processing protein ESF1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=ESF1 PE=1 SV=1
Length = 628
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 39/56 (69%)
Query: 34 LRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDE 89
LRQYQL+RL+YYYA+V ++ +Y CDG EYES+A DLR+VPD FD+
Sbjct: 249 LRQYQLDRLRYYYAIVYCSDTTTSKAIYDNCDGTEYESTANMFDLRYVPDGMTFDD 304
>sp|Q96F07|CYFP2_HUMAN Cytoplasmic FMR1-interacting protein 2 OS=Homo sapiens GN=CYFIP2
PE=1 SV=2
Length = 1278
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 79 RFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
R++ ++E + KW + SS ISPQ ++ + QIRDDH+++ISELAR
Sbjct: 317 RYIKTSAHYEE--NKSKWTCTQSS-ISPQYNICEQMVQIRDDHIRFISELAR 365
>sp|Q5SQX6|CYFP2_MOUSE Cytoplasmic FMR1-interacting protein 2 OS=Mus musculus GN=Cyfip2
PE=1 SV=2
Length = 1253
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 79 RFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
R++ ++E + KW + SS ISPQ ++ + QIRDDH+++ISELAR
Sbjct: 317 RYIKTSAHYEE--NKSKWTCTQSS-ISPQYNICEQMVQIRDDHIRFISELAR 365
>sp|Q6GQD1|CYFP2_XENLA Cytoplasmic FMR1-interacting protein 2 OS=Xenopus laevis GN=cyfip2
PE=2 SV=1
Length = 1253
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 79 RFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
R++ ++E + KW + SS ISPQ ++ + QIRDDH+++ISELAR
Sbjct: 317 RYIETSAHYEE--NKSKWTCTQSS-ISPQYNICEQMVQIRDDHIRFISELAR 365
>sp|Q5R414|CYFP2_PONAB Cytoplasmic FMR1-interacting protein 2 OS=Pongo abelii GN=CYFIP2
PE=2 SV=1
Length = 1253
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 79 RFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
R++ ++E + KW + SS ISPQ ++ + QIRDDH+++ISELAR
Sbjct: 317 RYIETSAHYEE--NKSKWTCTQSS-ISPQYNICEQMVQIRDDHIRFISELAR 365
>sp|Q7TMB8|CYFP1_MOUSE Cytoplasmic FMR1-interacting protein 1 OS=Mus musculus GN=Cyfip1
PE=1 SV=1
Length = 1253
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 79 RFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
R++ ++E + +W +SSS+ SPQ ++ + QIR+DHM++ISELAR
Sbjct: 317 RYIKTSAHYEE--NKSRWTCASSSS-SPQYNICEQMIQIREDHMRFISELAR 365
>sp|Q7L576|CYFP1_HUMAN Cytoplasmic FMR1-interacting protein 1 OS=Homo sapiens GN=CYFIP1
PE=1 SV=1
Length = 1253
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 79 RFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
R++ ++E + +W +SS + SPQ ++ + QIR+DHM++ISELAR
Sbjct: 317 RYIKTSAHYEE--NKSRWTCTSSGS-SPQYNICEQMIQIREDHMRFISELAR 365
>sp|Q90YM8|CYFP1_DANRE Cytoplasmic FMR1-interacting protein 1 homolog OS=Danio rerio
GN=cyfip1 PE=2 SV=1
Length = 1253
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 79 RFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
R++ ++E + +W +S+ + SPQ ++ + QIR+ HM++ISELAR
Sbjct: 317 RYIKTSAHYEE--NKSRWSCTSTGS-SPQYNVCEQMIQIREGHMRFISELAR 365
>sp|O44518|CYFIP_CAEEL Cytoplasmic FMR1-interacting protein homolog OS=Caenorhabditis
elegans GN=gex-2 PE=1 SV=4
Length = 1262
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 90 HFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
H++P KWPLS + +++ + IR DH Y+++ A+
Sbjct: 324 HYEPSKWPLSDKESDRCHVNIVEKVQSIRSDHESYVTQFAK 364
>sp|C0LGG7|Y1534_ARATH Probable LRR receptor-like serine/threonine-protein kinase
At1g53420 OS=Arabidopsis thaliana GN=At1g53420 PE=2 SV=2
Length = 953
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 8 ELVEQSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGM 67
E+V+ EG+ E E E + HRE R +N +K YY ++ + + S + + ++
Sbjct: 890 EVVKMLEGKKMVEVEKLEEASVHRETKRLENMNTMKKYYEMIGQEISTSMSMIMSD---- 945
Query: 68 EYESSA 73
ESSA
Sbjct: 946 RSESSA 951
>sp|Q0CKU4|ATG26_ASPTN Sterol 3-beta-glucosyltransferase OS=Aspergillus terreus (strain NIH
2624 / FGSC A1156) GN=atg26 PE=3 SV=1
Length = 1396
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 94 GKWPLSSSSNISPQADLMVHLPQIRDDHMKYI 125
G W LS +S+ +P ADLM + + RDD K +
Sbjct: 1117 GYWFLSEASDWTPPADLMAFIQRARDDGKKLV 1148
>sp|A8L3V1|RF1_FRASN Peptide chain release factor 1 OS=Frankia sp. (strain EAN1pec)
GN=prfA PE=3 SV=1
Length = 356
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 36 QYQLNRLKY---YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFD 92
Q RL++ + V ESA +++T G+ A VD+ P+D D
Sbjct: 169 QGVFGRLRFEGGVHRVQRVPVTESAGRIHTSAAGVLVLPEAADVDIEVDPNDLRIDVFRS 228
Query: 93 PGKWPLSSSSNISPQADLMVHLP 115
G P S N + A + HLP
Sbjct: 229 SG--PGGQSVNTTDSAVRITHLP 249
>sp|Q8RXK2|SDN3_ARATH Small RNA degrading nuclease 3 OS=Arabidopsis thaliana GN=SDN3 PE=1
SV=1
Length = 782
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 43 KYYYAVVVFDSAESANKVYTECDG 66
+YY AVV F+S E ANK + + G
Sbjct: 644 RYYNAVVTFNSPEEANKAFEKVKG 667
>sp|Q2J6M0|RF1_FRASC Peptide chain release factor 1 OS=Frankia sp. (strain CcI3) GN=prfA
PE=3 SV=1
Length = 357
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 55 ESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHL 114
ESA +++T G+ A VD+ P+D D G P S N + A + H+
Sbjct: 191 ESAGRIHTSAAGVLVLPEAEEVDVEIDPNDLRIDVFRSSG--PGGQSVNTTDSAVRITHI 248
Query: 115 P 115
P
Sbjct: 249 P 249
>sp|A0LSK4|RF1_ACIC1 Peptide chain release factor 1 OS=Acidothermus cellulolyticus
(strain ATCC 43068 / 11B) GN=prfA PE=3 SV=1
Length = 364
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 40 NRLKY---YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKW 96
+RLK+ + V ES +++T G+ A VD++ P+D D G
Sbjct: 169 SRLKFEGGVHRVQRVPVTESQGRIHTSAVGVLVMPEAEEVDVQIDPNDLRIDVFRSSG-- 226
Query: 97 PLSSSSNISPQADLMVHLP 115
P S N + A + HLP
Sbjct: 227 PGGQSVNTTDSAVRITHLP 245
>sp|P58682|TLR8_MOUSE Toll-like receptor 8 OS=Mus musculus GN=Tlr8 PE=1 SV=2
Length = 1032
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 56 SANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFD 92
S N++ + DG +Y S R+ DD EFD H +
Sbjct: 421 SGNRIASVLDGTDYSSWRNRLRKPLSTDDDEFDPHVN 457
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.129 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,747,760
Number of Sequences: 539616
Number of extensions: 1755774
Number of successful extensions: 3762
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 3733
Number of HSP's gapped (non-prelim): 50
length of query: 130
length of database: 191,569,459
effective HSP length: 96
effective length of query: 34
effective length of database: 139,766,323
effective search space: 4752054982
effective search space used: 4752054982
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)