Query psy7101
Match_columns 130
No_of_seqs 117 out of 223
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 18:12:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7101.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7101hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2318|consensus 100.0 9.2E-40 2E-44 291.3 6.9 117 2-120 225-343 (650)
2 COG5638 Uncharacterized conser 100.0 7.3E-35 1.6E-39 254.9 6.5 95 22-119 236-331 (622)
3 KOG3534|consensus 99.4 3.9E-13 8.4E-18 124.7 4.3 74 53-130 291-364 (1253)
4 PLN03099 PIR Protein PIR; Prov 95.9 0.0041 8.8E-08 61.0 1.8 27 104-130 294-320 (1232)
5 PF00076 RRM_1: RNA recognitio 92.2 0.24 5.1E-06 30.4 3.5 30 43-72 38-67 (70)
6 PF13893 RRM_5: RNA recognitio 90.4 0.49 1.1E-05 29.0 3.6 28 45-72 22-49 (56)
7 PF14259 RRM_6: RNA recognitio 89.3 0.62 1.3E-05 29.2 3.5 31 42-72 37-67 (70)
8 smart00360 RRM RNA recognition 86.6 1.3 2.8E-05 25.9 3.6 26 46-71 40-65 (71)
9 PLN03134 glycine-rich RNA-bind 85.5 1.1 2.4E-05 33.6 3.4 34 45-78 77-110 (144)
10 smart00362 RRM_2 RNA recogniti 85.1 1.6 3.5E-05 25.6 3.5 27 45-71 40-66 (72)
11 smart00361 RRM_1 RNA recogniti 84.2 1.8 3.8E-05 28.1 3.6 26 46-71 39-64 (70)
12 PF07576 BRAP2: BRCA1-associat 83.1 1.8 4E-05 31.8 3.7 31 41-71 51-81 (110)
13 cd00590 RRM RRM (RNA recogniti 79.3 3.7 8.1E-05 24.2 3.6 28 44-71 40-67 (74)
14 TIGR01661 ELAV_HUD_SF ELAV/HuD 77.8 2.7 5.8E-05 34.1 3.4 34 46-81 313-346 (352)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 71.2 5.2 0.00011 35.1 3.7 36 45-80 135-170 (481)
16 TIGR01661 ELAV_HUD_SF ELAV/HuD 69.2 6.6 0.00014 31.9 3.7 36 45-80 132-167 (352)
17 TIGR01659 sex-lethal sex-letha 67.8 6.9 0.00015 33.5 3.7 37 46-82 237-273 (346)
18 KOG0130|consensus 66.9 4.7 0.0001 32.0 2.3 36 46-81 116-151 (170)
19 TIGR01642 U2AF_lg U2 snRNP aux 64.7 6.7 0.00015 33.7 3.0 38 46-85 466-503 (509)
20 TIGR01642 U2AF_lg U2 snRNP aux 61.3 11 0.00023 32.5 3.6 29 45-73 338-366 (509)
21 smart00309 PAH Pancreatic horm 60.4 2.5 5.4E-05 25.9 -0.3 25 25-50 8-32 (36)
22 KOG1456|consensus 59.8 8.1 0.00018 35.0 2.7 36 46-81 161-196 (494)
23 TIGR01648 hnRNP-R-Q heterogene 58.1 11 0.00023 35.0 3.3 34 46-79 271-304 (578)
24 TIGR01622 SF-CC1 splicing fact 57.3 11 0.00023 32.0 3.0 38 46-85 412-449 (457)
25 COG2892 Uncharacterized protei 52.3 14 0.0003 26.5 2.4 18 47-64 6-23 (82)
26 TIGR01622 SF-CC1 splicing fact 51.1 18 0.00039 30.7 3.3 35 46-82 230-264 (457)
27 COG0724 RNA-binding proteins ( 50.7 24 0.00051 25.5 3.5 36 45-80 158-193 (306)
28 KOG4208|consensus 50.1 16 0.00035 30.3 2.8 57 26-84 58-130 (214)
29 PF11418 Scaffolding_pro: Phi2 50.0 11 0.00025 27.5 1.7 22 107-128 21-42 (97)
30 PF12583 TPPII_N: Tripeptidyl 49.0 5.2 0.00011 31.1 -0.2 28 30-64 75-102 (139)
31 TIGR01659 sex-lethal sex-letha 49.0 22 0.00047 30.5 3.5 27 46-72 151-177 (346)
32 KOG0110|consensus 46.2 36 0.00079 32.7 4.8 36 45-82 561-596 (725)
33 PF07129 DUF1381: Protein of u 45.2 19 0.00041 23.1 2.0 18 45-62 27-44 (44)
34 PF11608 Limkain-b1: Limkain b 44.0 38 0.00082 24.7 3.6 42 46-89 41-82 (90)
35 TIGR01645 half-pint poly-U bin 43.8 25 0.00055 32.9 3.3 31 46-76 151-181 (612)
36 PHA00489 scaffolding protein 43.2 16 0.00034 27.0 1.5 21 108-128 23-43 (101)
37 TIGR01649 hnRNP-L_PTB hnRNP-L/ 42.5 34 0.00073 30.1 3.8 29 45-73 437-465 (481)
38 cd00126 PAH Pancreatic Hormone 42.0 7.3 0.00016 23.9 -0.3 25 25-50 8-32 (36)
39 KOG0107|consensus 38.9 22 0.00047 29.1 1.9 33 46-78 49-81 (195)
40 TIGR01628 PABP-1234 polyadenyl 37.4 40 0.00086 29.8 3.4 28 46-73 328-355 (562)
41 cd02987 Phd_like_Phd Phosducin 36.8 22 0.00049 27.3 1.6 24 33-56 39-72 (175)
42 PF11767 SET_assoc: Histone ly 36.4 36 0.00078 23.0 2.4 43 31-75 18-64 (66)
43 PF06983 3-dmu-9_3-mt: 3-demet 35.6 39 0.00085 24.3 2.6 20 45-64 73-92 (116)
44 KOG0123|consensus 35.2 44 0.00094 29.1 3.3 34 42-77 115-148 (369)
45 PRK09986 DNA-binding transcrip 33.6 7.5 0.00016 30.2 -1.5 28 32-59 2-29 (294)
46 PRK14887 KEOPS complex Pcc1-li 33.6 51 0.0011 23.0 2.8 21 45-65 6-26 (84)
47 TIGR01628 PABP-1234 polyadenyl 33.4 50 0.0011 29.1 3.4 29 46-74 131-159 (562)
48 KOG0804|consensus 31.6 48 0.001 30.6 3.0 27 45-71 116-142 (493)
49 PRK10086 DNA-binding transcrip 31.6 7 0.00015 31.3 -2.0 30 30-59 7-36 (311)
50 PF06440 DNA_pol3_theta: DNA p 31.0 16 0.00036 25.7 0.0 16 30-45 44-59 (75)
51 PF03795 YCII: YCII-related do 30.1 58 0.0013 21.6 2.6 21 45-65 59-79 (95)
52 PF07045 DUF1330: Protein of u 29.5 59 0.0013 20.9 2.5 18 46-63 41-58 (65)
53 PF00159 Hormone_3: Pancreatic 29.5 10 0.00022 23.1 -1.1 23 26-49 9-31 (36)
54 PF04059 RRM_2: RNA recognitio 28.9 88 0.0019 22.5 3.5 28 44-71 45-72 (97)
55 TIGR01645 half-pint poly-U bin 28.5 67 0.0015 30.2 3.5 31 46-76 248-278 (612)
56 TIGR03418 chol_sulf_TF putativ 27.9 11 0.00023 29.5 -1.5 18 40-57 4-21 (291)
57 TIGR01648 hnRNP-R-Q heterogene 27.9 67 0.0014 29.9 3.4 25 46-70 101-125 (578)
58 PF12829 Mhr1: Transcriptional 27.5 65 0.0014 23.3 2.6 20 45-64 52-71 (91)
59 KOG0113|consensus 25.8 76 0.0016 27.9 3.2 33 46-78 145-177 (335)
60 COG5470 Uncharacterized conser 24.6 63 0.0014 23.7 2.1 17 47-63 56-72 (96)
61 PF12108 SF3a60_bindingd: Spli 21.8 56 0.0012 18.9 1.1 20 106-125 8-27 (28)
62 cd08356 Glo_EDI_BRP_like_17 Th 21.7 78 0.0017 21.5 2.1 26 46-72 4-29 (113)
63 PRK09906 DNA-binding transcrip 20.9 18 0.00039 28.2 -1.4 18 40-57 4-21 (296)
No 1
>KOG2318|consensus
Probab=100.00 E-value=9.2e-40 Score=291.34 Aligned_cols=117 Identities=44% Similarity=0.671 Sum_probs=108.3
Q ss_pred CccCc-hhhhccCCCCCchhhhccccchhcHHHHHHHHHhhhceeeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 2 KLLSP-LELVEQSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 2 ~~~gp-~el~~~~~~~~~~~~~~~~~~~~~~e~lR~Yq~~rlrYyyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
+|||| .+|++..+...+++.+.+++++|++++||+||++|||||||||||||++||++||++|||+||++|+|+|||||
T Consensus 225 eV~GP~~el~~~~e~~~~s~sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 225 EVHGPPKELFKPVEEYKESESDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred cccCChhhhccccccCcccccchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 69997 99999888776666667788889999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcCCCCCC-CcccCCCCCCCCchhHHhhhchhhhhh
Q psy7101 81 VPDDTEFDEHFDP-GKWPLSSSSNISPQADLMVHLPQIRDD 120 (130)
Q Consensus 81 VPDd~~Fd~~~~~-~~t~~P~~s~YkP~~~i~~~L~~iRe~ 120 (130)
|||||+|+++ |+ +|+++|.. +|+|..|.+.|||+..+.
T Consensus 305 IPDdm~Fddd-~rd~cseap~~-~Ykpk~Fst~Alq~s~vk 343 (650)
T KOG2318|consen 305 IPDDMTFDDD-PRDECSEAPGN-GYKPKDFSTRALQHSKVK 343 (650)
T ss_pred cCCCCccccc-cHhHhhhcccc-ccCchhhhHHHHHhcccc
Confidence 9999999987 77 99999984 699999999999998764
No 2
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.3e-35 Score=254.91 Aligned_cols=95 Identities=41% Similarity=0.701 Sum_probs=89.3
Q ss_pred hccccchhcHHHHHHHHHhhhceeeEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCCCCcCCCCCC-CcccCCC
Q psy7101 22 ESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDP-GKWPLSS 100 (130)
Q Consensus 22 ~~~~~~~~~~e~lR~Yq~~rlrYyyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~~Fd~~~~~-~~t~~P~ 100 (130)
+.+-|.+||+.+||+|||+|||||||||+|+++.|++.||..|||+||++|+|++|||||||+|+|+++ .| +|+.+|.
T Consensus 236 Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~~tfddd-~re~ct~~p~ 314 (622)
T COG5638 236 EGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDSLTFDDD-SREVCTKAPE 314 (622)
T ss_pred hcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCCCcccccc-hHhhhhcccc
Confidence 456678999999999999999999999999999999999999999999999999999999999999986 66 9999997
Q ss_pred CCCCCchhHHhhhchhhhh
Q psy7101 101 SSNISPQADLMVHLPQIRD 119 (130)
Q Consensus 101 ~s~YkP~~~i~~~L~~iRe 119 (130)
+|.|+.|.+-+||+-.+
T Consensus 315 --~y~p~~f~tdalqhs~v 331 (622)
T COG5638 315 --KYEPRDFVTDALQHSKV 331 (622)
T ss_pred --ccCcccchhhhhhhccc
Confidence 89999999999998654
No 3
>KOG3534|consensus
Probab=99.36 E-value=3.9e-13 Score=124.65 Aligned_cols=74 Identities=36% Similarity=0.640 Sum_probs=69.9
Q ss_pred CHHHHHHHHHhcCCcccccccccccccccCCCCCcCCCCCCCcccCCCCCCCCchhHHhhhchhhhhhhHHHHhhhcC
Q psy7101 53 SAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130 (130)
Q Consensus 53 s~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~~Fd~~~~~~~t~~P~~s~YkP~~~i~~~L~~iRe~h~~~iselAr 130 (130)
|....++||+++..+++.|++++-.+|||..+.+|++. .|++.++.+.+|++||+++|+|||+||++|||||||
T Consensus 291 ~lsriDk~FK~LeVVPLfGDMQI~~~~yik~S~Hye~S----kW~~s~s~s~spq~ni~e~~~qIR~DH~~yiselAr 364 (1253)
T KOG3534|consen 291 SLSRIDKIFKTLEVVPLFGDMQIEPFRYIKRSAHYEES----KWPLSSSESISPQYNICEQMQQIREDHERYISELAR 364 (1253)
T ss_pred CHHHHHHHHhheeeeeccCccchhHHHHhhhhcccCcc----cCCCcCcCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999863 799988778999999999999999999999999997
No 4
>PLN03099 PIR Protein PIR; Provisional
Probab=95.87 E-value=0.0041 Score=61.04 Aligned_cols=27 Identities=19% Similarity=0.327 Sum_probs=26.0
Q ss_pred CCchhHHhhhchhhhhhhHHHHhhhcC
Q psy7101 104 ISPQADLMVHLPQIRDDHMKYISELAR 130 (130)
Q Consensus 104 YkP~~~i~~~L~~iRe~h~~~iselAr 130 (130)
|+|+++|+++|.+||++|++|+++|||
T Consensus 294 F~~~y~I~~~m~~iR~dh~~f~~~~A~ 320 (1232)
T PLN03099 294 FQREYLIVNHMGAIRAEHDDFCIRFAS 320 (1232)
T ss_pred hcchHHHHHhHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999996
No 5
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=92.23 E-value=0.24 Score=30.41 Aligned_cols=30 Identities=33% Similarity=0.439 Sum_probs=26.5
Q ss_pred ceeeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 43 KYYYAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 43 rYyyAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
.-=||.|+|.+.+.|+++.++++|..+.+.
T Consensus 38 ~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~ 67 (70)
T PF00076_consen 38 SKGYAFVEFESEEDAEKALEELNGKKINGR 67 (70)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccceEEEEEcCHHHHHHHHHHcCCCEECcc
Confidence 345899999999999999999999988764
No 6
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=90.35 E-value=0.49 Score=29.03 Aligned_cols=28 Identities=29% Similarity=0.465 Sum_probs=25.7
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
-+|.|++.|++.|.+..+.++|..+.+.
T Consensus 22 ~~a~V~f~~~~~A~~a~~~l~~~~~~g~ 49 (56)
T PF13893_consen 22 GFAFVEFASVEDAQKAIEQLNGRQFNGR 49 (56)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 6799999999999999999999998664
No 7
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=89.31 E-value=0.62 Score=29.23 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=27.0
Q ss_pred hceeeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 42 LKYYYAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 42 lrYyyAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
...=+|.|+|.|.+.|..+.+.++|..+.+.
T Consensus 37 ~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 37 QSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp SEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 3456899999999999999999999988764
No 8
>smart00360 RRM RNA recognition motif.
Probab=86.59 E-value=1.3 Score=25.91 Aligned_cols=26 Identities=35% Similarity=0.567 Sum_probs=24.2
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYES 71 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~ 71 (130)
||.|+|.+.+.|....+.++|..+.+
T Consensus 40 ~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 40 FAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred eEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 89999999999999999999988865
No 9
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=85.46 E-value=1.1 Score=33.62 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=29.0
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDL 78 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDL 78 (130)
=||.|+|.+.+.|.+..++++|.++.+....+++
T Consensus 77 GfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 77 GFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 3899999999999999999999999886544443
No 10
>smart00362 RRM_2 RNA recognition motif.
Probab=85.10 E-value=1.6 Score=25.64 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.3
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYES 71 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~ 71 (130)
=||.|+|.+.+.|....+.++|..+.+
T Consensus 40 ~~~~v~f~~~~~a~~a~~~~~~~~~~~ 66 (72)
T smart00362 40 GFAFVEFESEEDAEKAIEALNGTKLGG 66 (72)
T ss_pred ceEEEEeCCHHHHHHHHHHhCCcEECC
Confidence 479999999999999999999988754
No 11
>smart00361 RRM_1 RNA recognition motif.
Probab=84.21 E-value=1.8 Score=28.06 Aligned_cols=26 Identities=15% Similarity=0.429 Sum_probs=24.5
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYES 71 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~ 71 (130)
||.|+|.+.+.|.+..++++|..+.+
T Consensus 39 ~~fV~f~~~~dA~~A~~~l~g~~~~g 64 (70)
T smart00361 39 NVYITFERSEDAARAIVDLNGRYFDG 64 (70)
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECC
Confidence 69999999999999999999998876
No 12
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=83.08 E-value=1.8 Score=31.76 Aligned_cols=31 Identities=29% Similarity=0.556 Sum_probs=26.8
Q ss_pred hhceeeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101 41 RLKYYYAVVVFDSAESANKVYTECDGMEYES 71 (130)
Q Consensus 41 rlrYyyAVvecds~~tA~~iY~e~dG~E~e~ 71 (130)
+---|=+++.|.|.+.|+..|++.+|..|-+
T Consensus 51 ~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 51 TPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3346889999999999999999999998843
No 13
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=79.32 E-value=3.7 Score=24.18 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=24.7
Q ss_pred eeeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101 44 YYYAVVVFDSAESANKVYTECDGMEYES 71 (130)
Q Consensus 44 YyyAVvecds~~tA~~iY~e~dG~E~e~ 71 (130)
.=+|.|+|.|.+.|....+.++|..+.+
T Consensus 40 ~~~~~v~f~s~~~a~~a~~~~~~~~~~~ 67 (74)
T cd00590 40 KGFAFVEFEDEEDAEKALEALNGKELGG 67 (74)
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3489999999999999999999988654
No 14
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=77.79 E-value=2.7 Score=34.13 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=28.7
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
||.|+|+|.+.|.+.-+.++|..+.+.. |-+.|+
T Consensus 313 ~aFV~F~~~~~A~~Ai~~lnG~~~~gr~--i~V~~~ 346 (352)
T TIGR01661 313 YGFVSMTNYDEAAMAILSLNGYTLGNRV--LQVSFK 346 (352)
T ss_pred eEEEEECCHHHHHHHHHHhCCCEECCeE--EEEEEc
Confidence 8999999999999999999999997754 444443
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=71.23 E-value=5.2 Score=35.09 Aligned_cols=36 Identities=19% Similarity=0.409 Sum_probs=29.9
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
.+|.|+|.+++.|.+.-++++|.++.+....|-+.|
T Consensus 135 ~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~ 170 (481)
T TIGR01649 135 FQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEY 170 (481)
T ss_pred eEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEE
Confidence 479999999999999999999999987554444444
No 16
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=69.23 E-value=6.6 Score=31.86 Aligned_cols=36 Identities=14% Similarity=0.333 Sum_probs=31.2
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
-||.|+|+|.+.|...-+.++|..+.++...+-++|
T Consensus 132 g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 132 GVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred cEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 489999999999999999999999988766565555
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=67.78 E-value=6.9 Score=33.54 Aligned_cols=37 Identities=19% Similarity=0.289 Sum_probs=32.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccccC
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVP 82 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVP 82 (130)
||.|+|.+.+.|.+.-+.|+|+.+++....|-+++.-
T Consensus 237 ~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~ 273 (346)
T TIGR01659 237 VAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAE 273 (346)
T ss_pred EEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECC
Confidence 8999999999999999999999999877777777643
No 18
>KOG0130|consensus
Probab=66.92 E-value=4.7 Score=32.03 Aligned_cols=36 Identities=28% Similarity=0.447 Sum_probs=34.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
||+||....+.|.+.-++++|.++.+-.-..|.-||
T Consensus 116 YaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 116 YALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 899999999999999999999999999888888876
No 19
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=64.65 E-value=6.7 Score=33.67 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=33.1
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCCC
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDT 85 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~ 85 (130)
+|.|+|.+++.|.+....|+|..|.+ ..+=+.|+|.+.
T Consensus 466 ~~fV~F~~~e~A~~A~~~lnGr~~~g--r~v~~~~~~~~~ 503 (509)
T TIGR01642 466 KVFLEYADVRSAEKAMEGMNGRKFND--RVVVAAFYGEDC 503 (509)
T ss_pred eEEEEECCHHHHHHHHHHcCCCEECC--eEEEEEEeCHHH
Confidence 78999999999999999999999966 667788877654
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=61.30 E-value=11 Score=32.46 Aligned_cols=29 Identities=10% Similarity=0.209 Sum_probs=26.7
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
-||.|+|.+.+.|....+.|+|+.+.+..
T Consensus 338 g~afv~f~~~~~a~~A~~~l~g~~~~~~~ 366 (509)
T TIGR01642 338 GYAFCEYKDPSVTDVAIAALNGKDTGDNK 366 (509)
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 58999999999999999999999998754
No 21
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=60.41 E-value=2.5 Score=25.92 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=19.6
Q ss_pred ccchhcHHHHHHHHHhhhceeeEEEE
Q psy7101 25 EGNAYHREKLRQYQLNRLKYYYAVVV 50 (130)
Q Consensus 25 ~~~~~~~e~lR~Yq~~rlrYyyAVve 50 (130)
.|++...|.|++|-.+ |+=|++||+
T Consensus 8 Pg~~a~~e~l~~Y~~~-L~~Yinlit 32 (36)
T smart00309 8 PGDDASPEDLRQYLAA-LREYINLIT 32 (36)
T ss_pred CCCCCCHHHHHHHHHH-HHHHHHHhc
Confidence 4666778889999887 888887764
No 22
>KOG1456|consensus
Probab=59.84 E-value=8.1 Score=35.01 Aligned_cols=36 Identities=25% Similarity=0.407 Sum_probs=32.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
=|.|||||++.|.+.=..++|..+.+-++.|-+-|-
T Consensus 161 QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyA 196 (494)
T KOG1456|consen 161 QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYA 196 (494)
T ss_pred eeEEeechhHHHHHHHhhcccccccccceeEEEEec
Confidence 389999999999999999999999999988877665
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=58.09 E-value=11 Score=34.96 Aligned_cols=34 Identities=41% Similarity=0.536 Sum_probs=30.3
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLR 79 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLR 79 (130)
||.|+|.|.+.|.+..++++|.+|.+....+++.
T Consensus 271 fAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~A 304 (578)
T TIGR01648 271 YAFVHFEDREDAVKAMDELNGKELEGSEIEVTLA 304 (578)
T ss_pred eEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 8999999999999999999999999876666554
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=57.31 E-value=11 Score=32.01 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=34.3
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCCC
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDT 85 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~ 85 (130)
+|.|+|.+++.|.+..+.|+|..|.+ ..+-..|+|.+.
T Consensus 412 ~~fV~F~~~e~A~~A~~~lnGr~f~g--r~i~~~~~~~~~ 449 (457)
T TIGR01622 412 KIYLKFSSVDAALAAFQALNGRYFGG--KMITAAFVVNDV 449 (457)
T ss_pred eEEEEECCHHHHHHHHHHhcCcccCC--eEEEEEEEcHHH
Confidence 78899999999999999999999887 668889998875
No 25
>COG2892 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.32 E-value=14 Score=26.46 Aligned_cols=18 Identities=33% Similarity=0.508 Sum_probs=16.1
Q ss_pred EEEEeCCHHHHHHHHHhc
Q psy7101 47 AVVVFDSAESANKVYTEC 64 (130)
Q Consensus 47 AVvecds~~tA~~iY~e~ 64 (130)
.|+||.|.++|..||+.+
T Consensus 6 ~viE~~see~AevIY~sv 23 (82)
T COG2892 6 IVIEFPSEEVAEVIYRSV 23 (82)
T ss_pred EEEEcCcHHHHHHHHHHh
Confidence 589999999999999943
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=51.05 E-value=18 Score=30.70 Aligned_cols=35 Identities=17% Similarity=0.436 Sum_probs=29.6
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccccC
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVP 82 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVP 82 (130)
||.|+|.+.+.|.+..++++|..+.+ ..|-+.|.-
T Consensus 230 ~afV~f~~~e~A~~A~~~l~g~~i~g--~~i~v~~a~ 264 (457)
T TIGR01622 230 FGFIQFHDAEEAKEALEVMNGFELAG--RPIKVGYAQ 264 (457)
T ss_pred EEEEEECCHHHHHHHHHhcCCcEECC--EEEEEEEcc
Confidence 89999999999999999999988866 556666643
No 27
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=50.73 E-value=24 Score=25.47 Aligned_cols=36 Identities=39% Similarity=0.447 Sum_probs=31.9
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
=||.|+|.+.+.|....+.++|..|.+....++...
T Consensus 158 g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 158 GFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred ceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 589999999999999999999999999887776643
No 28
>KOG4208|consensus
Probab=50.09 E-value=16 Score=30.27 Aligned_cols=57 Identities=18% Similarity=0.301 Sum_probs=44.0
Q ss_pred cchhcHHHHHHHHH------hhhce----------eeEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCC
Q psy7101 26 GNAYHREKLRQYQL------NRLKY----------YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDD 84 (130)
Q Consensus 26 ~~~~~~e~lR~Yq~------~rlrY----------yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd 84 (130)
.-.|....++.|-. -|.|- =||-|||.|.+.|+-+-+.+++--|.+ ..|-.+|||-+
T Consensus 58 p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e--~lL~c~vmppe 130 (214)
T KOG4208|consen 58 PHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME--HLLECHVMPPE 130 (214)
T ss_pred ccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh--heeeeEEeCch
Confidence 35566677777722 12232 589999999999999999999977776 56999999998
No 29
>PF11418 Scaffolding_pro: Phi29 scaffolding protein; InterPro: IPR024374 This protein is also referred to as Gp7. The protein contains a DNA-binding function and may have a role in mediating the structural transition from prohead to mature virus and also scaffold release [].Gp7 is arranged within the capsid as a series of concentric shells [].; PDB: 1NOH_C 1NO4_C 3MTU_E 3OA7_A.
Probab=49.98 E-value=11 Score=27.53 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.6
Q ss_pred hhHHhhhchhhhhhhHHHHhhh
Q psy7101 107 QADLMVHLPQIRDDHMKYISEL 128 (130)
Q Consensus 107 ~~~i~~~L~~iRe~h~~~isel 128 (130)
+..-+.+|+|+|+++++|.|+.
T Consensus 21 ~sErTeaLqqlr~~~~sf~sEy 42 (97)
T PF11418_consen 21 ESERTEALQQLRESYTSFHSEY 42 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 3445889999999999999985
No 30
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=49.02 E-value=5.2 Score=31.13 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=22.7
Q ss_pred cHHHHHHHHHhhhceeeEEEEeCCHHHHHHHHHhc
Q psy7101 30 HREKLRQYQLNRLKYYYAVVVFDSAESANKVYTEC 64 (130)
Q Consensus 30 ~~e~lR~Yq~~rlrYyyAVvecds~~tA~~iY~e~ 64 (130)
-.|+||.||..-| +-|+. +.|++||+++
T Consensus 75 Y~EaLRDfq~~~i------aKle~-e~Ae~vY~el 102 (139)
T PF12583_consen 75 YSEALRDFQCSWI------AKLEP-ENAEQVYEEL 102 (139)
T ss_dssp HHHHHHHHHHHHH------TTS-H-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HhhCH-HHHHHHHHHH
Confidence 4799999998854 56777 9999999987
No 31
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=49.01 E-value=22 Score=30.55 Aligned_cols=27 Identities=22% Similarity=0.439 Sum_probs=25.1
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+.-++++|..+..-
T Consensus 151 yaFVeF~~~e~A~~Ai~~LnG~~l~gr 177 (346)
T TIGR01659 151 YAFVDFGSEADSQRAIKNLNGITVRNK 177 (346)
T ss_pred EEEEEEccHHHHHHHHHHcCCCccCCc
Confidence 799999999999999999999998764
No 32
>KOG0110|consensus
Probab=46.18 E-value=36 Score=32.70 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=31.3
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccccC
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVP 82 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVP 82 (130)
=|+.|||+++++|.+.|+.++|+.+.+- .+-|++=+
T Consensus 561 GfgFVEF~~~e~A~~a~k~lqgtvldGH--~l~lk~S~ 596 (725)
T KOG0110|consen 561 GFGFVEFAKPESAQAALKALQGTVLDGH--KLELKISE 596 (725)
T ss_pred ceeEEEecCHHHHHHHHHHhcCceecCc--eEEEEecc
Confidence 7999999999999999999999999884 46666655
No 33
>PF07129 DUF1381: Protein of unknown function (DUF1381); InterPro: IPR009812 This entry is represented by Bacteriophage 92, Orf59. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Staphylococcus aureus bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=45.21 E-value=19 Score=23.07 Aligned_cols=18 Identities=39% Similarity=0.433 Sum_probs=16.1
Q ss_pred eeEEEEeCCHHHHHHHHH
Q psy7101 45 YYAVVVFDSAESANKVYT 62 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~ 62 (130)
.|.|||-+|.+.|.+.|+
T Consensus 27 t~tvVeAeskeeA~~kye 44 (44)
T PF07129_consen 27 TFTVVEAESKEEALKKYE 44 (44)
T ss_pred eEEEEEecchHHHHhhcC
Confidence 589999999999999884
No 34
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=44.03 E-value=38 Score=24.66 Aligned_cols=42 Identities=24% Similarity=0.489 Sum_probs=28.5
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCCCCcCC
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDE 89 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~~Fd~ 89 (130)
=||+-|.|.+.|..--+-++|-..++ +.+-.+|-|-.-+|-+
T Consensus 41 tAilrF~~~~~A~RA~KRmegEdVfG--~kI~v~~~~~~r~~~~ 82 (90)
T PF11608_consen 41 TAILRFPNQEFAERAQKRMEGEDVFG--NKISVSFSPKNREFNE 82 (90)
T ss_dssp -EEEEESSHHHHHHHHHHHTT--SSS--S--EEESS--S-----
T ss_pred EEEEEeCCHHHHHHHHHhhccccccc--ceEEEEEcCCcccccC
Confidence 49999999999999999999999998 5688999998888854
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=43.76 E-value=25 Score=32.88 Aligned_cols=31 Identities=19% Similarity=0.357 Sum_probs=27.5
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRV 76 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~l 76 (130)
||.|+|++.+.|.+..++++|..+.+-...+
T Consensus 151 fAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV 181 (612)
T TIGR01645 151 FAFVEYEVPEAAQLALEQMNGQMLGGRNIKV 181 (612)
T ss_pred eEEEEeCcHHHHHHHHHhcCCeEEecceeee
Confidence 8999999999999999999999998765333
No 36
>PHA00489 scaffolding protein
Probab=43.20 E-value=16 Score=26.97 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=18.0
Q ss_pred hHHhhhchhhhhhhHHHHhhh
Q psy7101 108 ADLMVHLPQIRDDHMKYISEL 128 (130)
Q Consensus 108 ~~i~~~L~~iRe~h~~~isel 128 (130)
..-+.+|+|+|+.+.+|.|+.
T Consensus 23 sErTeaLqqlr~~ygSf~sEy 43 (101)
T PHA00489 23 SERTEALQQLRESYGSFHSEY 43 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345889999999999999875
No 37
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=42.50 E-value=34 Score=30.06 Aligned_cols=29 Identities=10% Similarity=0.167 Sum_probs=26.5
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
-+|.|+|++.+.|...-..|+|.++.+..
T Consensus 437 ~~gfVeF~~~e~A~~Al~~ln~~~l~~~~ 465 (481)
T TIGR01649 437 KMGLLEWESVEDAVEALIALNHHQLNEPN 465 (481)
T ss_pred eeEEEEcCCHHHHHHHHHHhcCCccCCCC
Confidence 38999999999999999999999998764
No 38
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=42.04 E-value=7.3 Score=23.87 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=18.4
Q ss_pred ccchhcHHHHHHHHHhhhceeeEEEE
Q psy7101 25 EGNAYHREKLRQYQLNRLKYYYAVVV 50 (130)
Q Consensus 25 ~~~~~~~e~lR~Yq~~rlrYyyAVve 50 (130)
.|++...|.|++|-.+ |+=|+++|+
T Consensus 8 Pg~~a~~eel~~Y~~~-L~~Yinlit 32 (36)
T cd00126 8 PGDDASPEELRQYLAA-LREYINLIT 32 (36)
T ss_pred CCCCCCHHHHHHHHHH-HHHHHHHHc
Confidence 3455568899999877 777777664
No 39
>KOG0107|consensus
Probab=38.86 E-value=22 Score=29.12 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=28.1
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDL 78 (130)
||.|||.++-.|...-..|||..+-++-...-|
T Consensus 49 fAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 49 FAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred ceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 799999999999999999999998876554444
No 40
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=37.44 E-value=40 Score=29.77 Aligned_cols=28 Identities=29% Similarity=0.453 Sum_probs=25.4
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|++.+.|.+..++++|..+.+.-
T Consensus 328 ~gfV~f~~~~~A~~A~~~~~g~~~~gk~ 355 (562)
T TIGR01628 328 FGFVCFSNPEEANRAVTEMHGRMLGGKP 355 (562)
T ss_pred eEEEEeCCHHHHHHHHHHhcCCeeCCce
Confidence 8999999999999999999998887643
No 41
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=36.77 E-value=22 Score=27.30 Aligned_cols=24 Identities=33% Similarity=0.484 Sum_probs=14.1
Q ss_pred HHHHHHHhhh----------ceeeEEEEeCCHHH
Q psy7101 33 KLRQYQLNRL----------KYYYAVVVFDSAES 56 (130)
Q Consensus 33 ~lR~Yq~~rl----------rYyyAVvecds~~t 56 (130)
-|++|..+|| +.|=.|++.++.+.
T Consensus 39 ~l~~~R~~R~~el~~~~~~~~~~g~v~ei~~~~~ 72 (175)
T cd02987 39 FLQQYREQRMQEMHAKLPFGRRFGKVYELDSGEQ 72 (175)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCeEEEcCCHHH
Confidence 4666655544 34667778877333
No 42
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=36.42 E-value=36 Score=22.97 Aligned_cols=43 Identities=23% Similarity=0.617 Sum_probs=34.1
Q ss_pred HHHHHHHHHhhhce----eeEEEEeCCHHHHHHHHHhcCCccccccccc
Q psy7101 31 REKLRQYQLNRLKY----YYAVVVFDSAESANKVYTECDGMEYESSATR 75 (130)
Q Consensus 31 ~e~lR~Yq~~rlrY----yyAVvecds~~tA~~iY~e~dG~E~e~s~~~ 75 (130)
..+||+|.-.|.+- ||+ .|.|..-|++=|..|+|..+..+-..
T Consensus 18 K~~Lr~y~~~~I~~d~tGfYI--vF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 18 KKRLRKYRWDRIRDDRTGFYI--VFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred HHHHhcCCcceEEecCCEEEE--EECChHHHHHHHHhcCCCEEEEEEEE
Confidence 35688888887764 554 48999999999999999998876543
No 43
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=35.62 E-value=39 Score=24.28 Aligned_cols=20 Identities=10% Similarity=0.295 Sum_probs=17.7
Q ss_pred eeEEEEeCCHHHHHHHHHhc
Q psy7101 45 YYAVVVFDSAESANKVYTEC 64 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~ 64 (130)
.--+|+|+|.+.++.+|+.|
T Consensus 73 ~sl~i~~~~~ee~~~~f~~L 92 (116)
T PF06983_consen 73 ISLCIECDDEEEIDRIFDKL 92 (116)
T ss_dssp EEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEEcCCHHHHHHHHHHH
Confidence 45679999999999999987
No 44
>KOG0123|consensus
Probab=35.20 E-value=44 Score=29.09 Aligned_cols=34 Identities=35% Similarity=0.417 Sum_probs=29.5
Q ss_pred hceeeEEEEeCCHHHHHHHHHhcCCccccccccccc
Q psy7101 42 LKYYYAVVVFDSAESANKVYTECDGMEYESSATRVD 77 (130)
Q Consensus 42 lrYyyAVvecds~~tA~~iY~e~dG~E~e~s~~~lD 77 (130)
+|+| .|+|+|.+.|++.=+.++|+-+.+-.-+..
T Consensus 115 ~kg~--FV~f~~e~~a~~ai~~~ng~ll~~kki~vg 148 (369)
T KOG0123|consen 115 SKGY--FVQFESEESAKKAIEKLNGMLLNGKKIYVG 148 (369)
T ss_pred ceee--EEEeCCHHHHHHHHHHhcCcccCCCeeEEe
Confidence 8988 999999999999999999998887654443
No 45
>PRK09986 DNA-binding transcriptional activator XapR; Provisional
Probab=33.62 E-value=7.5 Score=30.20 Aligned_cols=28 Identities=29% Similarity=0.319 Sum_probs=21.4
Q ss_pred HHHHHHHHhhhceeeEEEEeCCHHHHHH
Q psy7101 32 EKLRQYQLNRLKYYYAVVVFDSAESANK 59 (130)
Q Consensus 32 e~lR~Yq~~rlrYyyAVvecds~~tA~~ 59 (130)
|+|+..-++.|||+-||++.-|...|..
T Consensus 2 ~~~~~~~l~~l~~f~~v~~~gs~t~AA~ 29 (294)
T PRK09986 2 ERLYRIDLKLLRYFLAVAEELHFGRAAA 29 (294)
T ss_pred chhhhhhHHHHHHHHHHHHhcCHHHHHH
Confidence 5677777888888888888888776643
No 46
>PRK14887 KEOPS complex Pcc1-like subunit; Provisional
Probab=33.57 E-value=51 Score=23.04 Aligned_cols=21 Identities=19% Similarity=0.325 Sum_probs=18.3
Q ss_pred eeEEEEeCCHHHHHHHHHhcC
Q psy7101 45 YYAVVVFDSAESANKVYTECD 65 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~d 65 (130)
..+-++|+|.+.|..||+.+-
T Consensus 6 ~~lei~f~s~~~A~iiy~sl~ 26 (84)
T PRK14887 6 FTLEFEFETEERARIIYRSVL 26 (84)
T ss_pred EEEEEEECCHHHHHHHHHHhC
Confidence 357899999999999999874
No 47
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=33.41 E-value=50 Score=29.13 Aligned_cols=29 Identities=28% Similarity=0.468 Sum_probs=26.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSAT 74 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~ 74 (130)
||.|+|.+.+.|++..+.++|+.+.+...
T Consensus 131 ~afV~F~~~e~A~~Ai~~lng~~~~~~~i 159 (562)
T TIGR01628 131 YGFVHFEKEESAKAAIQKVNGMLLNDKEV 159 (562)
T ss_pred EEEEEECCHHHHHHHHHHhcccEecCceE
Confidence 79999999999999999999998877543
No 48
>KOG0804|consensus
Probab=31.59 E-value=48 Score=30.55 Aligned_cols=27 Identities=26% Similarity=0.630 Sum_probs=25.0
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYES 71 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~ 71 (130)
|-++|.|.+-+.|+..|++++|-.|-+
T Consensus 116 ymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 116 YMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred EEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 789999999999999999999998754
No 49
>PRK10086 DNA-binding transcriptional regulator DsdC; Provisional
Probab=31.58 E-value=7 Score=31.29 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=21.5
Q ss_pred cHHHHHHHHHhhhceeeEEEEeCCHHHHHH
Q psy7101 30 HREKLRQYQLNRLKYYYAVVVFDSAESANK 59 (130)
Q Consensus 30 ~~e~lR~Yq~~rlrYyyAVvecds~~tA~~ 59 (130)
.+.-|+.+.++.||||.||+++-|...|.+
T Consensus 7 ~~~~~~~~~l~~L~~f~~va~~gs~s~AA~ 36 (311)
T PRK10086 7 RNRLLNGWQLSKLHTFEVAARHQSFALAAD 36 (311)
T ss_pred HHhhhcCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 344566777777888888888888776643
No 50
>PF06440 DNA_pol3_theta: DNA polymerase III, theta subunit; InterPro: IPR009052 This entry represents the theta subunit of DNA polymerase III from bacteria, whose core structure consists of an irregular array of three helices []. DNA polymerase III (Pol III) is the primary enzyme responsible for replication of Escherichia coli chromosomal DNA. The holoenzyme consists of 17 proteins and contains two core polymerases. The Pol III catalytic core has three tightly associated subunits: alpha, epsilon and theta. The alpha subunit is responsible for the DNA polymerase activity, while the epsilon subunit is the 3'-5' proofreading exonuclease. The epsilon subunit binds to both the alpha and theta subunits in the linear order alpha-epsilon-theta. The theta subunit is the smallest, and may act to enhance the proofreading activity of epsilon, especially under extreme conditions []. This entry also includes a homologue of polymerase III theta called HOT (homologue of theta) from Bacteriophage P1. HOT contains three alpha-helices, as reported for theta, but the folding topology of the two is different, which could account for the suggested greater heat stability of HOT as compared to theta [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 1SE7_A 2IDO_D 2AE9_A 1DU2_A 2XY8_B 2AXD_S.
Probab=30.97 E-value=16 Score=25.72 Aligned_cols=16 Identities=50% Similarity=0.914 Sum_probs=13.6
Q ss_pred cHHHHHHHHHhhhcee
Q psy7101 30 HREKLRQYQLNRLKYY 45 (130)
Q Consensus 30 ~~e~lR~Yq~~rlrYy 45 (130)
.++.||.|=.+||.||
T Consensus 44 qPe~LR~YFreRL~~Y 59 (75)
T PF06440_consen 44 QPEHLREYFRERLNYY 59 (75)
T ss_dssp S-GGGHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHH
Confidence 4678999999999998
No 51
>PF03795 YCII: YCII-related domain; InterPro: IPR005545 The majority of proteins in this group contain a single copy of this domain, though it is also found as a repeat (e.g. in Q9AJZ7 from SWISSPROT). A strongly conserved histidine and a aspartate suggest that the domain has an enzymatic function. This entry also covers what was previously known as the DGPF domain (COG3795). Although its function is unknown it is found fused to a sigma-70 factor family domain in Q9A8M4 from SWISSPROT, suggesting that this domain may plays a role in transcription initiation. This domain is named after the most conserved motif in the alignment.; PDB: 1S7I_A 1MWQ_A.
Probab=30.14 E-value=58 Score=21.59 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=17.3
Q ss_pred eeEEEEeCCHHHHHHHHHhcC
Q psy7101 45 YYAVVVFDSAESANKVYTECD 65 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~d 65 (130)
=|.|++|+|.+.|..|-+++-
T Consensus 59 g~~i~~a~s~e~A~~~~~~dP 79 (95)
T PF03795_consen 59 GFIIVEAESREEAEEIAKEDP 79 (95)
T ss_dssp EEEEEEESSHHHHHHHHCT-H
T ss_pred EEEEEEeCCHHHHHHHHHhCC
Confidence 477999999999999987653
No 52
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=29.48 E-value=59 Score=20.92 Aligned_cols=18 Identities=28% Similarity=0.455 Sum_probs=15.7
Q ss_pred eEEEEeCCHHHHHHHHHh
Q psy7101 46 YAVVVFDSAESANKVYTE 63 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e 63 (130)
-.||||.|.+.|...|+.
T Consensus 41 ~viieFPs~~aa~~~~~s 58 (65)
T PF07045_consen 41 VVIIEFPSMEAAKAWYNS 58 (65)
T ss_dssp EEEEEESSHHHHHHHHCS
T ss_pred EEEEECCCHHHHHHHHCC
Confidence 489999999999998863
No 53
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=29.45 E-value=10 Score=23.14 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=16.7
Q ss_pred cchhcHHHHHHHHHhhhceeeEEE
Q psy7101 26 GNAYHREKLRQYQLNRLKYYYAVV 49 (130)
Q Consensus 26 ~~~~~~e~lR~Yq~~rlrYyyAVv 49 (130)
|+....|.||+|-.+ |+=||+||
T Consensus 9 ~~~aspeel~~Y~~~-L~~Y~~lv 31 (36)
T PF00159_consen 9 GDFASPEELAQYYAA-LRHYINLV 31 (36)
T ss_dssp STTSSHHHHHHHHHH-HHHHHHHH
T ss_pred CCCCCHHHHHHHHHH-HHHHHHHH
Confidence 455567889999777 77777665
No 54
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=28.92 E-value=88 Score=22.47 Aligned_cols=28 Identities=29% Similarity=0.505 Sum_probs=24.8
Q ss_pred eeeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101 44 YYYAVVVFDSAESANKVYTECDGMEYES 71 (130)
Q Consensus 44 YyyAVvecds~~tA~~iY~e~dG~E~e~ 71 (130)
.=||.|-+-|++.|...|+..+|.....
T Consensus 45 ~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 45 LGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred eEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 3489999999999999999999998843
No 55
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=28.47 E-value=67 Score=30.16 Aligned_cols=31 Identities=13% Similarity=0.305 Sum_probs=27.7
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRV 76 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~l 76 (130)
||.|+|.+.+.|.+.-+.++|.++.+.--..
T Consensus 248 fGFVeFe~~e~A~kAI~amNg~elgGr~LrV 278 (612)
T TIGR01645 248 YGFIEYNNLQSQSEAIASMNLFDLGGQYLRV 278 (612)
T ss_pred eEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 8999999999999999999999998865443
No 56
>TIGR03418 chol_sulf_TF putative choline sulfate-utilization transcription factor. Members of this protein family are transcription factors of the LysR family. Their genes typically are divergently transcribed from choline-sulfatase genes. That enzyme makes choline, a precursor to the osmoprotectant glycine-betaine, available by hydrolysis of choline sulfate.
Probab=27.88 E-value=11 Score=29.46 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=9.3
Q ss_pred hhhceeeEEEEeCCHHHH
Q psy7101 40 NRLKYYYAVVVFDSAESA 57 (130)
Q Consensus 40 ~rlrYyyAVvecds~~tA 57 (130)
+.||||.||+++-|...|
T Consensus 4 ~~L~~f~~v~~~gs~s~A 21 (291)
T TIGR03418 4 QALRVFESAARLASFTAA 21 (291)
T ss_pred HHHHHHHHHHHhCCHHHH
Confidence 345555555555555443
No 57
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=27.86 E-value=67 Score=29.88 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=23.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYE 70 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e 70 (130)
||.|+|.|.+.|++.-+.++|.++.
T Consensus 101 faFV~F~~~e~A~~Ai~~lng~~i~ 125 (578)
T TIGR01648 101 YAFVTFCGKEEAKEAVKLLNNYEIR 125 (578)
T ss_pred eEEEEeCCHHHHHHHHHHcCCCeec
Confidence 8999999999999999999999885
No 58
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=27.48 E-value=65 Score=23.26 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=18.1
Q ss_pred eeEEEEeCCHHHHHHHHHhc
Q psy7101 45 YYAVVVFDSAESANKVYTEC 64 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~ 64 (130)
=+|||.|.+.+.+..+|+.|
T Consensus 52 pm~vv~f~~~~~g~~~yq~L 71 (91)
T PF12829_consen 52 PMCVVNFPNYEVGVSAYQKL 71 (91)
T ss_pred EeEEEECCChHHHHHHHHHH
Confidence 37999999999999999876
No 59
>KOG0113|consensus
Probab=25.79 E-value=76 Score=27.94 Aligned_cols=33 Identities=21% Similarity=0.552 Sum_probs=29.6
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDL 78 (130)
||.||+.....-+..|++.||.-+.+--.+.|.
T Consensus 145 YAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 145 YAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred eEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 899999999999999999999988877777665
No 60
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=24.60 E-value=63 Score=23.75 Aligned_cols=17 Identities=35% Similarity=0.557 Sum_probs=15.4
Q ss_pred EEEEeCCHHHHHHHHHh
Q psy7101 47 AVVVFDSAESANKVYTE 63 (130)
Q Consensus 47 AVvecds~~tA~~iY~e 63 (130)
.||||.|.++|...|+.
T Consensus 56 vviEFps~~~ar~~y~S 72 (96)
T COG5470 56 VVIEFPSLEAARDCYNS 72 (96)
T ss_pred EEEEcCCHHHHHHHhcC
Confidence 79999999999999864
No 61
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=21.85 E-value=56 Score=18.89 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=15.3
Q ss_pred chhHHhhhchhhhhhhHHHH
Q psy7101 106 PQADLMVHLPQIRDDHMKYI 125 (130)
Q Consensus 106 P~~~i~~~L~~iRe~h~~~i 125 (130)
|=..+-..|..||+=|.+|-
T Consensus 8 ~f~eFY~rlk~Ike~Hrr~P 27 (28)
T PF12108_consen 8 PFSEFYERLKEIKEYHRRYP 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHS--
T ss_pred hHHHHHHHHHHHHHHHHhCC
Confidence 44567899999999999874
No 62
>cd08356 Glo_EDI_BRP_like_17 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.71 E-value=78 Score=21.47 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=21.5
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
+.++-|.+.+++.+.|++| |.+....
T Consensus 4 ~~~l~v~Dl~~s~~FY~~L-Gf~~~~~ 29 (113)
T cd08356 4 RPFIPAKDFAESKQFYQAL-GFELEWE 29 (113)
T ss_pred eeccccccHHHHHHHHHHh-CCeeEec
Confidence 4678899999999999997 8776554
No 63
>PRK09906 DNA-binding transcriptional regulator HcaR; Provisional
Probab=20.87 E-value=18 Score=28.24 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=8.8
Q ss_pred hhhceeeEEEEeCCHHHH
Q psy7101 40 NRLKYYYAVVVFDSAESA 57 (130)
Q Consensus 40 ~rlrYyyAVvecds~~tA 57 (130)
+.|+|+.||+++-|...|
T Consensus 4 ~~L~~f~~v~~~gs~s~A 21 (296)
T PRK09906 4 RHLRYFVAVAEELNFTKA 21 (296)
T ss_pred HHHHHHHHHHhhCCHHHH
Confidence 345555555555554443
Done!