Query psy7101
Match_columns 130
No_of_seqs 117 out of 223
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 18:13:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7101.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7101hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p8c_A Cytoplasmic FMR1-intera 98.4 6.9E-08 2.4E-12 92.2 2.0 75 53-130 291-365 (1253)
2 1fxl_A Paraneoplastic encephal 92.3 0.15 5.1E-06 34.8 4.0 36 45-80 131-166 (167)
3 2e5i_A Heterogeneous nuclear r 92.2 0.15 5.3E-06 36.3 4.1 37 45-81 63-99 (124)
4 1why_A Hypothetical protein ri 91.7 0.2 6.7E-06 32.5 3.8 35 46-80 55-89 (97)
5 1b7f_A Protein (SXL-lethal pro 91.7 0.19 6.6E-06 34.4 4.0 36 45-80 132-167 (168)
6 3zzy_A Polypyrimidine tract-bi 91.5 0.15 5.1E-06 37.0 3.4 39 43-81 65-103 (130)
7 4a8x_A RNA-binding protein wit 91.4 0.2 6.7E-06 31.4 3.6 29 45-73 48-76 (88)
8 2diu_A KIAA0430 protein; struc 90.3 0.28 9.4E-06 34.6 3.7 34 45-78 47-80 (96)
9 2x1f_A MRNA 3'-END-processing 90.2 0.29 9.9E-06 31.6 3.6 34 45-80 45-78 (96)
10 3bs9_A Nucleolysin TIA-1 isofo 90.2 0.3 1E-05 30.5 3.6 27 46-72 50-76 (87)
11 3mdf_A Peptidyl-prolyl CIS-tra 90.1 0.3 1E-05 30.4 3.5 27 46-72 51-77 (85)
12 2cqc_A Arginine/serine-rich sp 90.0 0.3 1E-05 31.0 3.5 27 46-72 59-85 (95)
13 2krb_A Eukaryotic translation 89.9 0.3 1E-05 30.6 3.4 28 45-72 48-75 (81)
14 1x5s_A Cold-inducible RNA-bind 89.8 0.34 1.2E-05 31.4 3.7 28 46-73 56-83 (102)
15 2dnz_A Probable RNA-binding pr 89.7 0.4 1.4E-05 30.5 3.9 34 46-81 49-82 (95)
16 2e5h_A Zinc finger CCHC-type a 89.7 0.32 1.1E-05 31.0 3.4 27 46-72 60-86 (94)
17 3md1_A Nuclear and cytoplasmic 89.7 0.35 1.2E-05 30.0 3.5 28 45-72 44-71 (83)
18 2cpf_A RNA binding motif prote 89.7 0.36 1.2E-05 31.0 3.7 34 45-80 51-84 (98)
19 2dnq_A RNA-binding protein 4B; 89.5 0.46 1.6E-05 30.2 4.1 28 46-73 44-71 (90)
20 1whw_A Hypothetical protein ri 89.4 0.38 1.3E-05 31.0 3.7 34 45-80 51-84 (99)
21 2dgv_A HnRNP M, heterogeneous 89.4 0.48 1.6E-05 30.0 4.1 28 45-72 49-76 (92)
22 1sjr_A Polypyrimidine tract-bi 89.4 0.41 1.4E-05 36.1 4.3 37 45-81 85-121 (164)
23 3ulh_A THO complex subunit 4; 89.4 0.34 1.1E-05 31.7 3.4 34 46-81 72-105 (107)
24 2dgt_A RNA-binding protein 30; 89.2 0.39 1.3E-05 30.7 3.6 33 46-80 46-78 (92)
25 3beg_B Splicing factor, argini 89.1 0.4 1.4E-05 32.4 3.7 35 45-81 52-86 (115)
26 1x5t_A Splicing factor 3B subu 89.0 0.36 1.2E-05 30.8 3.3 28 46-73 50-77 (96)
27 2hzc_A Splicing factor U2AF 65 89.0 0.36 1.2E-05 30.2 3.2 27 45-72 54-80 (87)
28 1p1t_A Cleavage stimulation fa 88.9 0.48 1.6E-05 30.7 3.9 29 45-73 51-79 (104)
29 2fy1_A RNA-binding motif prote 88.9 0.44 1.5E-05 32.3 3.9 35 45-81 49-83 (116)
30 3ex7_B RNA-binding protein 8A; 88.9 0.41 1.4E-05 32.3 3.6 31 46-76 66-96 (126)
31 1wg1_A KIAA1579 protein, homol 88.8 0.43 1.5E-05 30.4 3.5 39 46-86 42-80 (88)
32 2cq0_A Eukaryotic translation 88.7 0.43 1.5E-05 31.0 3.6 33 46-80 59-91 (103)
33 2kvi_A Nuclear polyadenylated 88.6 0.54 1.8E-05 30.4 4.0 29 45-73 46-74 (96)
34 2fc8_A NCL protein; structure 88.6 0.38 1.3E-05 31.2 3.2 33 46-80 56-88 (102)
35 2do4_A Squamous cell carcinoma 88.6 0.41 1.4E-05 31.0 3.4 29 45-73 59-87 (100)
36 1p27_B RNA-binding protein 8A; 88.6 0.53 1.8E-05 30.6 4.0 29 45-73 66-94 (106)
37 2cqp_A RNA-binding protein 12; 88.6 0.46 1.6E-05 30.5 3.6 34 45-80 58-91 (98)
38 2cpx_A Hypothetical protein FL 88.6 0.51 1.7E-05 31.2 3.9 33 46-80 69-101 (115)
39 2div_A TRNA selenocysteine ass 88.5 0.49 1.7E-05 30.5 3.7 29 45-73 53-81 (99)
40 2cq2_A Hypothetical protein LO 88.5 0.42 1.4E-05 33.8 3.6 37 46-82 65-104 (114)
41 1jmt_A Splicing factor U2AF 35 88.5 0.47 1.6E-05 32.1 3.8 36 45-82 69-104 (104)
42 1x4e_A RNA binding motif, sing 88.4 0.22 7.5E-06 31.3 1.9 26 46-71 49-74 (85)
43 4fxv_A ELAV-like protein 1; RN 88.4 0.45 1.6E-05 31.6 3.6 28 46-73 63-90 (99)
44 2e5j_A Methenyltetrahydrofolat 88.4 0.5 1.7E-05 30.6 3.7 28 46-73 58-85 (97)
45 2cqh_A IGF-II mRNA-binding pro 88.3 0.37 1.3E-05 30.8 3.0 34 45-80 45-79 (93)
46 2cpe_A RNA-binding protein EWS 88.3 0.44 1.5E-05 31.5 3.4 28 46-73 67-94 (113)
47 2dhg_A TRNA selenocysteine ass 88.3 0.72 2.5E-05 29.9 4.5 29 45-73 52-81 (104)
48 2cq3_A RNA-binding protein 9; 88.3 0.49 1.7E-05 30.7 3.6 33 46-80 57-89 (103)
49 2dgo_A Cytotoxic granule-assoc 88.2 0.5 1.7E-05 31.3 3.7 34 46-81 59-92 (115)
50 2dnp_A RNA-binding protein 14; 88.2 0.41 1.4E-05 30.5 3.2 33 46-80 45-77 (90)
51 1nu4_A U1A RNA binding domain; 88.2 0.43 1.5E-05 30.5 3.3 34 45-80 52-85 (97)
52 2fc9_A NCL protein; structure 88.2 0.4 1.4E-05 31.1 3.1 33 46-80 55-87 (101)
53 3p5t_L Cleavage and polyadenyl 88.2 0.31 1.1E-05 31.2 2.5 28 46-73 47-74 (90)
54 1x5u_A Splicing factor 3B subu 87.9 0.57 1.9E-05 30.5 3.7 33 46-80 59-91 (105)
55 2cqb_A Peptidyl-prolyl CIS-tra 87.8 0.39 1.3E-05 31.1 2.9 34 45-80 55-88 (102)
56 2xnq_A Nuclear polyadenylated 87.8 0.5 1.7E-05 31.0 3.5 28 45-72 58-85 (97)
57 2la6_A RNA-binding protein FUS 87.8 0.61 2.1E-05 30.2 3.8 28 46-73 65-92 (99)
58 2dgu_A Heterogeneous nuclear r 87.8 0.46 1.6E-05 31.1 3.2 34 46-81 47-80 (103)
59 2d9p_A Polyadenylate-binding p 87.7 0.64 2.2E-05 30.2 3.9 34 45-80 56-89 (103)
60 1oo0_B CG8781-PA, drosophila Y 87.7 0.53 1.8E-05 30.9 3.6 29 45-73 69-97 (110)
61 2cqi_A Nucleolysin TIAR; RNA r 87.7 0.53 1.8E-05 30.6 3.5 34 45-80 56-89 (103)
62 2kxn_B Transformer-2 protein h 87.7 0.65 2.2E-05 32.3 4.1 28 46-73 90-117 (129)
63 2cpz_A CUG triplet repeat RNA- 87.6 0.49 1.7E-05 31.5 3.4 33 46-80 69-101 (115)
64 1fjc_A Nucleolin RBD2, protein 87.5 0.42 1.4E-05 30.6 2.9 28 46-73 55-82 (96)
65 1x4g_A Nucleolysin TIAR; struc 87.5 0.55 1.9E-05 31.0 3.5 35 45-81 62-96 (109)
66 2dgp_A Bruno-like 4, RNA bindi 87.5 0.68 2.3E-05 30.1 4.0 36 45-80 56-92 (106)
67 2dnh_A Bruno-like 5, RNA bindi 87.5 0.58 2E-05 30.4 3.6 36 45-80 57-93 (105)
68 3s8s_A Histone-lysine N-methyl 87.5 0.5 1.7E-05 32.1 3.4 29 46-74 50-78 (110)
69 3lqv_A PRE-mRNA branch site pr 87.5 0.58 2E-05 31.0 3.6 28 46-73 49-76 (115)
70 2ywk_A Putative RNA-binding pr 87.4 0.46 1.6E-05 30.2 3.0 28 45-72 58-85 (95)
71 2cpd_A Apobec-1 stimulating pr 87.3 0.51 1.7E-05 30.5 3.2 33 46-80 53-85 (99)
72 2cph_A RNA binding motif prote 87.3 0.71 2.4E-05 30.0 3.9 34 46-81 60-94 (107)
73 2ek1_A RNA-binding protein 12; 87.2 0.61 2.1E-05 29.6 3.5 29 45-73 58-86 (95)
74 2jrs_A RNA-binding protein 39; 87.2 0.73 2.5E-05 30.8 4.0 33 46-80 70-102 (108)
75 2do0_A HnRNP M, heterogeneous 87.1 0.56 1.9E-05 30.9 3.4 34 45-80 57-90 (114)
76 1x4a_A Splicing factor, argini 87.0 0.55 1.9E-05 30.9 3.3 33 46-80 63-95 (109)
77 1whx_A Hypothetical protein ri 86.9 0.65 2.2E-05 31.3 3.7 38 46-85 48-85 (111)
78 2dgx_A KIAA0430 protein; RRM d 86.9 0.55 1.9E-05 30.5 3.2 27 46-72 54-80 (96)
79 1x5o_A RNA binding motif, sing 86.9 0.71 2.4E-05 30.5 3.9 27 46-72 68-94 (114)
80 1x4c_A Splicing factor, argini 86.9 0.6 2.1E-05 30.9 3.5 27 45-71 51-77 (108)
81 2ki2_A SS-DNA binding protein 86.8 0.58 2E-05 29.6 3.2 28 45-73 44-71 (90)
82 2la4_A Nuclear and cytoplasmic 86.8 0.66 2.3E-05 30.0 3.6 28 45-72 64-91 (101)
83 3md3_A Nuclear and cytoplasmic 86.7 0.61 2.1E-05 31.6 3.5 28 46-73 131-158 (166)
84 2cpj_A Non-POU domain-containi 86.7 0.53 1.8E-05 30.5 3.0 35 45-81 52-86 (99)
85 2jvr_A Nucleolar protein 3; RN 86.7 0.58 2E-05 32.3 3.4 28 46-73 69-96 (111)
86 2kt5_A RNA and export factor-b 86.6 1.2 4.1E-05 30.0 4.9 36 46-83 78-113 (124)
87 2ytc_A PRE-mRNA-splicing facto 86.3 0.76 2.6E-05 28.6 3.6 28 45-72 49-77 (85)
88 2dnm_A SRP46 splicing factor; 86.2 0.39 1.3E-05 31.3 2.2 34 45-80 56-89 (103)
89 1u6f_A Tcubp1, RNA-binding pro 86.2 0.68 2.3E-05 31.6 3.5 33 46-80 86-118 (139)
90 1h2v_Z 20 kDa nuclear CAP bind 86.0 0.69 2.4E-05 32.4 3.5 35 45-81 82-116 (156)
91 3ns6_A Eukaryotic translation 86.0 0.82 2.8E-05 30.0 3.7 27 45-71 55-81 (100)
92 2jvo_A Nucleolar protein 3; nu 85.7 0.71 2.4E-05 31.0 3.4 29 45-73 66-94 (108)
93 2hvz_A Splicing factor, argini 85.3 0.48 1.6E-05 30.7 2.3 34 45-80 38-71 (101)
94 2ku7_A MLL1 PHD3-CYP33 RRM chi 85.3 0.64 2.2E-05 31.4 3.0 28 45-72 106-133 (140)
95 4f25_A Polyadenylate-binding p 85.2 0.86 2.9E-05 30.7 3.6 28 46-73 47-74 (115)
96 2cpi_A CCR4-NOT transcription 85.1 0.85 2.9E-05 30.4 3.5 28 45-72 64-91 (111)
97 2dit_A HIV TAT specific factor 85.0 1.7 5.8E-05 29.0 5.0 41 46-88 66-106 (112)
98 2khc_A Testis-specific RNP-typ 84.9 0.57 2E-05 31.2 2.6 28 46-73 84-111 (118)
99 1wf1_A RNA-binding protein RAL 84.8 0.61 2.1E-05 30.8 2.7 34 45-80 63-96 (110)
100 1x5p_A Negative elongation fac 84.6 0.93 3.2E-05 29.2 3.5 33 46-80 51-83 (97)
101 2e5g_A U6 snRNA-specific termi 84.4 2.3 7.7E-05 27.2 5.3 27 46-73 47-73 (94)
102 2err_A Ataxin-2-binding protei 84.1 0.69 2.4E-05 30.8 2.7 29 45-73 70-98 (109)
103 2j76_E EIF-4B, EIF4B, eukaryot 84.1 1.2 4E-05 29.1 3.8 27 46-73 63-89 (100)
104 2dgw_A Probable RNA-binding pr 84.1 1 3.4E-05 28.6 3.4 26 46-72 52-77 (91)
105 2mss_A Protein (musashi1); RNA 83.8 0.99 3.4E-05 27.5 3.2 27 46-73 43-69 (75)
106 3ucg_A Polyadenylate-binding p 83.8 0.77 2.6E-05 28.7 2.7 27 46-73 50-76 (89)
107 1rk8_A CG8781-PA, CG8781-PA pr 83.8 0.94 3.2E-05 32.3 3.5 29 45-73 115-143 (165)
108 3nmr_A Cugbp ELAV-like family 83.7 1.2 4.3E-05 30.4 4.0 35 46-80 138-173 (175)
109 2a3j_A U1 small nuclear ribonu 83.5 1.1 3.8E-05 31.5 3.7 28 46-73 74-101 (127)
110 1fj7_A Nucleolin RBD1, protein 83.4 1.2 3.9E-05 28.8 3.5 27 46-73 60-86 (101)
111 2jwn_A Embryonic polyadenylate 82.8 1.2 3.9E-05 29.9 3.4 32 46-80 80-111 (124)
112 3tyt_A Heterogeneous nuclear r 82.8 1.2 4.1E-05 33.2 3.8 33 45-77 166-198 (205)
113 2pe8_A Splicing factor 45; RRM 82.7 1.2 4.2E-05 30.1 3.6 36 45-82 57-92 (105)
114 2bz2_A Negative elongation fac 82.7 1.3 4.5E-05 30.4 3.7 33 46-80 75-107 (121)
115 2dgs_A DAZ-associated protein 82.3 1.6 5.4E-05 28.0 3.8 28 45-73 53-80 (99)
116 1x4h_A RNA-binding protein 28; 82.3 1.4 4.7E-05 28.8 3.6 28 46-73 59-92 (111)
117 2nlw_A Eukaryotic translation 82.3 0.73 2.5E-05 30.4 2.2 28 45-72 62-89 (105)
118 2dng_A Eukaryotic translation 82.0 1.2 4.1E-05 28.9 3.2 27 46-73 58-84 (103)
119 3v4m_A Splicing factor U2AF 65 82.0 1.4 4.6E-05 29.8 3.6 37 45-83 60-96 (105)
120 2qfj_A FBP-interacting repress 81.5 1.8 6.1E-05 30.8 4.2 34 45-80 168-201 (216)
121 3n9u_C Cleavage and polyadenyl 81.4 1.5 5.1E-05 31.6 3.8 28 46-73 101-128 (156)
122 1wi8_A EIF-4B, eukaryotic tran 81.4 1.2 4.1E-05 28.9 3.0 27 46-73 59-85 (104)
123 3egn_A RNA-binding protein 40; 81.1 1.3 4.5E-05 30.5 3.3 28 46-73 94-121 (143)
124 2l9w_A U4/U6 snRNA-associated- 80.7 1.2 4.3E-05 32.6 3.1 44 28-71 32-89 (117)
125 2i2y_A Fusion protein consists 80.7 1.7 5.9E-05 30.1 3.8 29 45-73 111-139 (150)
126 4f02_A Polyadenylate-binding p 80.6 1.5 5E-05 32.2 3.6 34 45-80 144-177 (213)
127 1fxl_A Paraneoplastic encephal 80.5 1.7 5.6E-05 29.4 3.6 36 45-82 45-80 (167)
128 2g4b_A Splicing factor U2AF 65 80.5 1 3.5E-05 30.9 2.5 29 45-73 137-165 (172)
129 2dis_A Unnamed protein product 80.3 1.9 6.5E-05 28.1 3.7 34 46-81 54-89 (109)
130 2kn4_A Immunoglobulin G-bindin 80.1 1.6 5.5E-05 30.3 3.5 33 46-80 114-146 (158)
131 1b7f_A Protein (SXL-lethal pro 79.9 1.7 6E-05 29.5 3.6 35 46-82 47-81 (168)
132 1fje_B Nucleolin RBD12, protei 79.5 1.3 4.5E-05 30.6 2.8 33 46-80 138-170 (175)
133 2lea_A Serine/arginine-rich sp 79.4 1.3 4.4E-05 30.9 2.8 27 46-72 91-117 (135)
134 3md3_A Nuclear and cytoplasmic 78.8 2 6.9E-05 28.9 3.6 35 46-82 43-77 (166)
135 1wex_A Hypothetical protein (r 77.9 1.5 5.1E-05 29.7 2.7 35 46-80 53-87 (104)
136 3tht_A Alkylated DNA repair pr 77.8 2 6.8E-05 35.6 3.9 36 46-81 58-96 (345)
137 2wbr_A GW182, gawky, LD47780P; 77.7 2 6.9E-05 29.6 3.3 31 46-76 45-75 (89)
138 2cqd_A RNA-binding region cont 77.5 1.8 6.1E-05 28.6 2.9 32 46-80 61-92 (116)
139 2f3j_A RNA and export factor b 77.4 2.4 8.1E-05 31.1 3.9 37 46-84 131-167 (177)
140 2cq4_A RNA binding motif prote 77.1 1.2 4E-05 29.5 1.9 26 46-72 69-94 (114)
141 3s6e_A RNA-binding protein 39; 76.8 2 6.7E-05 29.9 3.1 38 45-84 56-93 (114)
142 2lcw_A RNA-binding protein FUS 78.5 0.5 1.7E-05 31.5 0.0 34 45-80 58-91 (116)
143 3ue2_A Poly(U)-binding-splicin 76.5 2.5 8.4E-05 29.4 3.6 36 46-83 73-108 (118)
144 2yh0_A Splicing factor U2AF 65 75.6 1.3 4.6E-05 31.0 2.0 34 45-80 157-190 (198)
145 1qm9_A Polypyrimidine tract-bi 75.5 2.5 8.4E-05 30.0 3.4 35 45-80 159-193 (198)
146 3q2s_C Cleavage and polyadenyl 74.6 1.9 6.3E-05 32.9 2.7 31 46-76 114-144 (229)
147 2qfj_A FBP-interacting repress 74.3 2.9 9.9E-05 29.7 3.5 29 45-73 71-99 (216)
148 2db1_A Heterogeneous nuclear r 74.1 2.5 8.6E-05 28.6 3.0 27 46-73 63-89 (118)
149 3tyt_A Heterogeneous nuclear r 73.9 2.6 8.8E-05 31.4 3.3 29 45-73 43-71 (205)
150 1s79_A Lupus LA protein; RRM, 73.9 3.2 0.00011 27.7 3.4 27 46-73 54-80 (103)
151 2dh8_A DAZ-associated protein 73.8 2.2 7.6E-05 27.6 2.6 26 46-72 60-85 (105)
152 1wel_A RNA-binding protein 12; 73.8 2.2 7.7E-05 28.7 2.7 26 46-72 69-94 (124)
153 2adc_A Polypyrimidine tract-bi 73.4 3.1 0.00011 30.7 3.6 34 46-80 191-224 (229)
154 3pgw_A U1-A; protein-RNA compl 72.8 2.9 0.0001 31.4 3.4 35 45-81 53-87 (282)
155 2e44_A Insulin-like growth fac 72.8 4.2 0.00014 25.7 3.7 34 47-82 57-90 (96)
156 2lkz_A RNA-binding protein 5; 72.8 1.6 5.4E-05 29.1 1.7 23 46-68 55-77 (95)
157 2g4b_A Splicing factor U2AF 65 72.8 3 0.0001 28.5 3.2 33 45-80 52-84 (172)
158 3pgw_S U1-70K; protein-RNA com 72.1 2.5 8.5E-05 35.5 3.1 33 46-78 146-178 (437)
159 3pgw_A U1-A; protein-RNA compl 71.7 3.4 0.00012 31.0 3.5 26 45-70 245-270 (282)
160 2adc_A Polypyrimidine tract-bi 71.2 4.1 0.00014 30.1 3.8 34 46-81 74-107 (229)
161 3r27_A HnRNP L, heterogeneous 71.1 2 6.7E-05 29.6 1.9 25 46-70 59-83 (100)
162 2lmi_A GRSF-1, G-rich sequence 70.6 4.1 0.00014 26.8 3.4 26 46-72 57-82 (107)
163 1wg5_A Heterogeneous nuclear r 70.3 4.3 0.00015 26.5 3.4 27 46-73 59-85 (104)
164 1iqt_A AUF1, heterogeneous nuc 69.2 3.3 0.00011 24.9 2.5 27 46-73 43-69 (75)
165 3smz_A Protein raver-1, ribonu 69.2 3.7 0.00013 30.9 3.2 35 45-81 227-261 (284)
166 3nmr_A Cugbp ELAV-like family 68.7 4.8 0.00016 27.3 3.5 26 45-70 48-73 (175)
167 2cq1_A PTB-like protein L; RRM 67.8 2.7 9.2E-05 28.3 2.0 28 45-72 52-81 (101)
168 2lxi_A RNA-binding protein 10; 67.8 4.1 0.00014 26.2 2.8 28 45-72 45-73 (91)
169 2cpy_A RNA-binding protein 12; 67.4 3.7 0.00013 27.3 2.7 27 46-73 59-85 (114)
170 1no4_A Late, head morphogenesi 67.1 2.4 8.3E-05 29.7 1.7 23 107-129 21-43 (97)
171 1fje_B Nucleolin RBD12, protei 66.9 4.3 0.00015 27.9 3.0 32 46-80 56-87 (175)
172 1uaw_A Mouse-musashi-1; RNP-ty 66.7 3.5 0.00012 24.9 2.2 26 46-72 44-69 (77)
173 2dnn_A RNA-binding protein 12; 66.6 5.3 0.00018 27.1 3.3 26 46-72 58-83 (109)
174 1x4b_A Heterogeneous nuclear r 66.2 4.6 0.00016 26.6 2.9 27 46-73 71-97 (116)
175 1qm9_A Polypyrimidine tract-bi 66.0 3.6 0.00012 29.1 2.5 34 46-81 43-76 (198)
176 2yh0_A Splicing factor U2AF 65 66.0 3.7 0.00013 28.7 2.5 27 46-73 53-79 (198)
177 2cjk_A Nuclear polyadenylated 65.4 5.2 0.00018 27.1 3.1 27 46-73 131-157 (167)
178 2hgl_A HNRPF protein, heteroge 63.8 4.6 0.00016 28.6 2.7 26 46-72 90-115 (136)
179 1wez_A HnRNP H', FTP-3, hetero 63.7 4.7 0.00016 26.6 2.6 26 46-72 57-82 (102)
180 2dnl_A Cytoplasmic polyadenyla 63.3 5.6 0.00019 26.4 2.9 27 45-71 53-82 (114)
181 3d2w_A TAR DNA-binding protein 63.0 5.3 0.00018 25.6 2.7 31 45-79 49-79 (89)
182 1x4f_A Matrin 3; structural ge 63.0 4.4 0.00015 28.2 2.4 26 46-71 64-91 (112)
183 2m2b_A RNA-binding protein 10; 62.9 15 0.00051 24.8 5.1 32 46-80 69-104 (131)
184 3smz_A Protein raver-1, ribonu 62.6 6.8 0.00023 29.4 3.6 35 46-82 59-93 (284)
185 2ad9_A Polypyrimidine tract-bi 61.6 4.4 0.00015 28.5 2.2 27 46-72 69-97 (119)
186 3s7r_A Heterogeneous nuclear r 60.6 7.5 0.00026 24.0 3.0 25 46-71 55-79 (87)
187 2ghp_A U4/U6 snRNA-associated 60.3 7.3 0.00025 29.3 3.4 34 45-80 160-193 (292)
188 3sde_A Paraspeckle component 1 60.2 6.8 0.00023 29.5 3.2 35 45-81 59-93 (261)
189 2ghp_A U4/U6 snRNA-associated 59.4 7 0.00024 29.4 3.2 27 45-72 255-281 (292)
190 1x4d_A Matrin 3; structural ge 57.6 4.6 0.00016 27.4 1.7 24 45-68 53-76 (102)
191 1l3k_A Heterogeneous nuclear r 56.3 10 0.00034 26.3 3.3 32 46-80 148-179 (196)
192 1sjq_A Polypyrimidine tract-bi 54.7 14 0.00047 25.4 3.7 27 46-72 54-82 (105)
193 2cqg_A TDP-43, TAR DNA-binding 53.7 12 0.00041 23.9 3.2 31 46-80 59-89 (103)
194 1wf0_A TDP-43, TAR DNA-binding 53.4 7.1 0.00024 24.3 2.0 32 45-80 43-74 (88)
195 4f02_A Polyadenylate-binding p 52.8 13 0.00044 27.0 3.6 28 46-73 59-86 (213)
196 3dxb_A Thioredoxin N-terminall 50.4 16 0.00054 26.7 3.7 36 46-83 177-212 (222)
197 3u1l_A PRE-mRNA-splicing facto 49.1 17 0.00057 28.5 3.9 25 45-69 180-204 (240)
198 2dha_A FLJ20171 protein; RRM d 47.4 13 0.00044 25.8 2.7 25 46-71 70-94 (123)
199 2hgn_A Heterogeneous nuclear r 46.4 7.7 0.00026 27.6 1.4 26 46-72 88-113 (139)
200 2xs2_A Deleted in azoospermia- 45.7 4.5 0.00015 25.9 0.1 25 45-71 51-75 (102)
201 1l3k_A Heterogeneous nuclear r 45.5 20 0.0007 24.7 3.5 27 46-73 57-83 (196)
202 2rs2_A Musashi-1, RNA-binding 45.1 17 0.00059 23.8 3.0 26 46-72 69-94 (109)
203 2d9o_A DNAJ (HSP40) homolog, s 44.1 20 0.0007 24.0 3.2 40 27-66 27-76 (100)
204 2i2y_A Fusion protein consists 40.6 6.3 0.00022 27.2 0.2 31 46-77 15-46 (150)
205 1uth_A LYSR-type regulatory pr 38.8 6.5 0.00022 29.4 0.0 25 34-58 11-35 (315)
206 2hgm_A HNRPF protein, heteroge 38.8 18 0.00063 25.3 2.4 26 46-72 86-111 (126)
207 4g6x_A Glyoxalase/bleomycin re 35.5 31 0.001 23.3 3.1 36 36-71 19-54 (155)
208 3enc_A Protein PCC1; dimerizat 35.5 24 0.00084 24.0 2.5 18 48-65 16-33 (87)
209 3sde_A Paraspeckle component 1 34.4 25 0.00086 26.3 2.7 26 45-70 138-163 (261)
210 2voo_A Lupus LA protein; RNA-b 34.4 34 0.0012 25.0 3.3 25 46-71 152-176 (193)
211 2dnr_A Synaptojanin-1; RRM dom 34.3 23 0.00079 24.3 2.3 29 47-76 52-80 (91)
212 3lo3_A Uncharacterized conserv 31.6 33 0.0011 22.8 2.7 18 46-63 55-72 (94)
213 2fiu_A Conserved hypothetical 29.6 38 0.0013 22.7 2.7 18 46-63 56-73 (99)
214 1s7i_A Hypothetical protein PA 26.7 47 0.0016 23.3 2.9 23 46-68 87-109 (124)
215 3mtu_E Head morphogenesis prot 26.0 31 0.001 23.5 1.7 22 107-128 25-46 (77)
216 2h9b_A HTH-type transcriptiona 26.0 14 0.00049 27.4 0.0 20 39-58 3-22 (312)
217 3mz1_A Putative transcriptiona 25.4 15 0.00051 26.2 0.0 19 41-59 2-20 (300)
218 3oa7_A Head morphogenesis prot 25.2 29 0.00098 27.5 1.6 22 107-128 25-46 (206)
219 2l60_A Peptide YY; GPCR ligand 25.0 5.8 0.0002 24.2 -1.9 24 25-49 12-35 (41)
220 2dhx_A Poly (ADP-ribose) polym 24.0 58 0.002 23.0 2.9 42 28-69 19-76 (104)
221 2dt7_A Splicing factor 3A subu 24.0 29 0.001 20.2 1.1 23 106-128 11-33 (38)
222 2h98_A HTH-type transcriptiona 21.8 19 0.00066 27.0 0.0 20 39-58 3-22 (313)
223 1al3_A Cys regulon transcripti 21.6 19 0.00067 26.9 0.0 20 39-58 3-23 (324)
224 1ufw_A Synaptojanin 2; RNP dom 21.1 45 0.0015 23.1 1.8 28 47-75 61-88 (95)
No 1
>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=98.40 E-value=6.9e-08 Score=92.23 Aligned_cols=75 Identities=28% Similarity=0.488 Sum_probs=62.2
Q ss_pred CHHHHHHHHHhcCCcccccccccccccccCCCCCcCCCCCCCcccCCCCCCCCchhHHhhhchhhhhhhHHHHhhhcC
Q psy7101 53 SAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130 (130)
Q Consensus 53 s~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~~Fd~~~~~~~t~~P~~s~YkP~~~i~~~L~~iRe~h~~~iselAr 130 (130)
+...+++||+++..+++.|++.+-...||+...+|+... .+|++|.. +.+|+++|+++|++||++|.+|+++|||
T Consensus 291 ~l~rl~kIfK~~pVVPl~gDm~i~p~s~lk~~~~~~~~~--s~wp~~~~-~~~~~y~i~~~l~~~r~~~~~~~~~la~ 365 (1253)
T 3p8c_A 291 NLSKIDKYFKQLQVVPLFGDMQIELARYIKTSAHYEENK--SRWTCTSS-GSSPQYNICEQMIQIREDHMRFISELAR 365 (1253)
T ss_dssp CHHHHHHHHHHSCEEEEETTEEEETHHHHHTSTTTGGGG--GGCSTTCC--------CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhCCcccCcCccccCHHHHHhhCCCcccch--hcCCCCCC-CccchhhHHhhhHHHHHHHHHHHHHHHH
Confidence 688999999999999999999999999999999997542 36888775 7999999999999999999999999995
No 2
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=92.28 E-value=0.15 Score=34.75 Aligned_cols=36 Identities=14% Similarity=0.268 Sum_probs=30.0
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
=||.|+|.+.+.|.+..+.++|..+.+....+-++|
T Consensus 131 g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 131 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 479999999999999999999999988654454443
No 3
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=92.16 E-value=0.15 Score=36.33 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=31.7
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
|+|.|||.+.+.|.+.-+.|+|.++.+....|.+.|-
T Consensus 63 f~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 63 IQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 4799999999999999999999999986555666654
No 4
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=91.65 E-value=0.2 Score=32.47 Aligned_cols=35 Identities=17% Similarity=0.433 Sum_probs=29.2
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+....|-++|
T Consensus 55 ~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 55 FAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred EEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 89999999999999999999999984445555544
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=91.65 E-value=0.19 Score=34.45 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=30.4
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
-||.|+|.+.+.|.+..+.++|..+.+....|-++|
T Consensus 132 g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 132 GVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred eEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 389999999999999999999999988665555443
No 6
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=91.55 E-value=0.15 Score=37.00 Aligned_cols=39 Identities=15% Similarity=0.272 Sum_probs=33.6
Q ss_pred ceeeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 43 KYYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 43 rYyyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
|=++|-|||.+++.|.+-.+.|||.++.+.+..|.+.|-
T Consensus 65 ~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 65 NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 456799999999999999999999999986666666665
No 7
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=91.45 E-value=0.2 Score=31.40 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=26.5
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
=||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 48 g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 48 GYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 48999999999999999999999998754
No 8
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.26 E-value=0.28 Score=34.59 Aligned_cols=34 Identities=15% Similarity=0.179 Sum_probs=29.8
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDL 78 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDL 78 (130)
=+|.|+|++++.|..-.++++|.++.+-...+++
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~ 80 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSF 80 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEES
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEe
Confidence 3899999999999999999999999987755543
No 9
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=90.19 E-value=0.29 Score=31.57 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=28.6
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
-||.|+|.+.+.|.+..+.++|..+.+ ..|-++|
T Consensus 45 g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~ 78 (96)
T 2x1f_A 45 GYAFIEFRDLESSASAVRNLNGYQLGS--RFLKCGY 78 (96)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred eEEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEE
Confidence 489999999999999999999999987 4444444
No 10
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=90.17 E-value=0.3 Score=30.53 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=25.2
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.|.+.|.+..+.++|..+.+.
T Consensus 50 ~afV~f~~~~~A~~A~~~l~g~~~~g~ 76 (87)
T 3bs9_A 50 YGFVSFFNKWDAENAIQQMGGQWLGGR 76 (87)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 899999999999999999999988764
No 11
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=90.05 E-value=0.3 Score=30.42 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=25.2
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+..+.++|..+.+.
T Consensus 51 ~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 51 FAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 899999999999999999999998764
No 12
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=90.02 E-value=0.3 Score=31.04 Aligned_cols=27 Identities=26% Similarity=0.576 Sum_probs=25.2
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+..+.++|..+.+.
T Consensus 59 ~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 59 FAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp EEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 899999999999999999999998763
No 13
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=89.94 E-value=0.3 Score=30.63 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=25.8
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
=||.|+|.+.+.|.+.-++++|..+.+.
T Consensus 48 g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 48 GYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred EEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 3899999999999999999999998774
No 14
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.80 E-value=0.34 Score=31.39 Aligned_cols=28 Identities=14% Similarity=0.399 Sum_probs=25.7
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 56 ~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 1x5s_A 56 FGFVTFENIDDAKDAMMAMNGKSVDGRQ 83 (102)
T ss_dssp EEEEECSSHHHHHHHHHHHTTCCTTSCC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 8999999999999999999999987643
No 15
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.71 E-value=0.4 Score=30.55 Aligned_cols=34 Identities=21% Similarity=0.477 Sum_probs=28.5
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
||.|+|.+.+.|.+..+.++|..+.+ ..|-+++.
T Consensus 49 ~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a 82 (95)
T 2dnz_A 49 YGFITFSDSECARRALEQLNGFELAG--RPMRVGHV 82 (95)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCCSSS--SCCEEEES
T ss_pred EEEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEEc
Confidence 89999999999999999999999876 44555443
No 16
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.69 E-value=0.32 Score=30.96 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=25.2
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+..+.++|..+.+.
T Consensus 60 ~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 60 VAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp CEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred EEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 899999999999999999999998764
No 17
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=89.68 E-value=0.35 Score=29.99 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=25.6
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
=||.|+|.+.+.|.+..+.++|..+.+.
T Consensus 44 g~afV~f~~~~~a~~a~~~l~g~~~~g~ 71 (83)
T 3md1_A 44 GYGFVSFTSQDDAQNAMDSMQGQDLNGR 71 (83)
T ss_dssp EEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred ceEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 3899999999999999999999998763
No 18
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.66 E-value=0.36 Score=31.04 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=28.6
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
-||.|+|.+.+.|.+..+.++|..+.+. .|-+++
T Consensus 51 g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~ 84 (98)
T 2cpf_A 51 GFGFVEYKKPEQAQKALKQLQGHTVDGH--KLEVRI 84 (98)
T ss_dssp EEEEEEESSHHHHHHHHHHSTTCEETTE--ECEEEC
T ss_pred cEEEEEECCHHHHHHHHHHhCCCeeCCe--EEEEEE
Confidence 4899999999999999999999998864 454444
No 19
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.50 E-value=0.46 Score=30.24 Aligned_cols=28 Identities=11% Similarity=0.198 Sum_probs=25.6
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 44 ~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 44 YGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred EEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 8999999999999999999999887644
No 20
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=89.43 E-value=0.38 Score=30.96 Aligned_cols=34 Identities=29% Similarity=0.384 Sum_probs=28.4
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
=||.|+|.+.+.|.+..+.++|..+.+. .|-+++
T Consensus 51 g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~ 84 (99)
T 1whw_A 51 GFAFVTFMFPEHAVKAYAEVDGQVFQGR--MLHVLP 84 (99)
T ss_dssp SEEEEEESSHHHHHHHHHHTTTEESSSC--EEEEEE
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCc--EEEEEE
Confidence 4899999999999999999999998863 444444
No 21
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=89.39 E-value=0.48 Score=29.99 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=25.6
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
=||.|+|.+.+.|.+..+.++|..+.+.
T Consensus 49 g~afV~f~~~~~a~~a~~~l~g~~~~g~ 76 (92)
T 2dgv_A 49 GCGVVKFESPEVAERACRMMNGMKLSGR 76 (92)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 4799999999999999999999998764
No 22
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=89.38 E-value=0.41 Score=36.09 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=31.9
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
.||.|||.+.+.|.+..+.|+|.++.+.+..|.+.|-
T Consensus 85 gfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~A 121 (164)
T 1sjr_A 85 FQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 121 (164)
T ss_dssp EEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEe
Confidence 5999999999999999999999999875566666664
No 23
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=89.35 E-value=0.34 Score=31.68 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=28.5
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
||.|+|.+.+.|.+..+.++|..+.+ ..|-++|.
T Consensus 72 ~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a 105 (107)
T 3ulh_A 72 TADVHFERKADALKAMKQYNGVPLDG--RPMNIQLV 105 (107)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEEEe
Confidence 99999999999999999999999976 44444443
No 24
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.23 E-value=0.39 Score=30.72 Aligned_cols=33 Identities=27% Similarity=0.486 Sum_probs=28.3
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+ ..|-+++
T Consensus 46 ~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~ 78 (92)
T 2dgt_A 46 YAFVHMERAEDAVEAIRGLDNTEFQG--KRMHVQL 78 (92)
T ss_dssp EEEEEESCHHHHHHHHHHHTTEEETT--EEEEEEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCeeCC--cEEEEEE
Confidence 99999999999999999999999976 4455444
No 25
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=89.11 E-value=0.4 Score=32.45 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=29.2
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
=||.|+|.+.+.|.+..+.++|.++.+-. +.+.||
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~--~~~~~i 86 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHE--GETAYI 86 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTT--SCCCBC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcE--eeeEEE
Confidence 58999999999999999999999998743 444444
No 26
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.96 E-value=0.36 Score=30.81 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=25.7
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 50 ~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 50 YAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp EEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 8999999999999999999999987643
No 27
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=88.95 E-value=0.36 Score=30.18 Aligned_cols=27 Identities=19% Similarity=0.473 Sum_probs=24.6
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
=||.|+|.+.+.|.+.. .++|..+.+.
T Consensus 54 g~afV~f~~~~~a~~A~-~l~g~~~~g~ 80 (87)
T 2hzc_A 54 NFAFLEFRSVDETTQAM-AFDGIIFQGQ 80 (87)
T ss_dssp SEEEEEESSHHHHHHHG-GGTTCEETTE
T ss_pred cEEEEEcCCHHHHHHHH-hcCCCEECCe
Confidence 48999999999999999 9999998764
No 28
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.95 E-value=0.48 Score=30.68 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=26.1
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
=||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 51 g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (104)
T 1p1t_A 51 GYGFCEYQDQETALSAMRNLNGREFSGRA 79 (104)
T ss_dssp EEEEEECSCHHHHHHHHHHSSSBSCSSSC
T ss_pred eEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 48999999999999999999999987643
No 29
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=88.92 E-value=0.44 Score=32.35 Aligned_cols=35 Identities=14% Similarity=0.345 Sum_probs=29.3
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
-||.|+|.+.+.|.+..+.++|..+.+.. |-+++-
T Consensus 49 g~afV~F~~~~~A~~Ai~~l~g~~~~g~~--l~V~~a 83 (116)
T 2fy1_A 49 GFAFITFENPADAKNAAKDMNGKSLHGKA--IKVEQA 83 (116)
T ss_dssp CEEEEECSSHHHHHHHHHHCSSCBCSSSB--CEEEEC
T ss_pred cEEEEEECCHHHHHHHHHHhCCCEECCEE--EEEEEC
Confidence 48999999999999999999999998744 544443
No 30
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=88.86 E-value=0.41 Score=32.26 Aligned_cols=31 Identities=16% Similarity=0.350 Sum_probs=27.1
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRV 76 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~l 76 (130)
||.|+|.+.+.|.+..+.|+|..+.+....+
T Consensus 66 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 96 (126)
T 3ex7_B 66 YTLVEYETYKEAQAAMEGLNGQDLMGQPISV 96 (126)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 8999999999999999999999997754333
No 31
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=88.83 E-value=0.43 Score=30.45 Aligned_cols=39 Identities=15% Similarity=0.213 Sum_probs=32.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCCCC
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTE 86 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~~ 86 (130)
||.|+|.+.+.|.+..+.++|.++.+ ..+-+++-|.+..
T Consensus 42 ~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 42 TAFVTLLNGEQAQNAIQMFHQYSFRG--KDLIVQLQPTDAL 80 (88)
T ss_dssp EEEECCSCHHHHHHHHHHHTTEEETT--EEEEEEECCCCCC
T ss_pred EEEEEECCHHHHHHHHHHhCCCeECC--cEEEEEEcCCCce
Confidence 89999999999999999999999976 4566666666553
No 32
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.70 E-value=0.43 Score=31.04 Aligned_cols=33 Identities=18% Similarity=0.485 Sum_probs=28.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+. .|-++|
T Consensus 59 ~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~ 91 (103)
T 2cq0_A 59 FAFISFHRREDAARAIAGVSGFGYDHL--ILNVEW 91 (103)
T ss_dssp EEEEEESSHHHHHHHHHHTTTCEETTE--ECEEEE
T ss_pred EEEEEECCHHHHHHHHHHcCCCeeCCc--EEEEEE
Confidence 899999999999999999999998764 444444
No 33
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=88.62 E-value=0.54 Score=30.43 Aligned_cols=29 Identities=10% Similarity=0.076 Sum_probs=26.3
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
=||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 46 g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 74 (96)
T 2kvi_A 46 AFGFIQFDNPQSVRDAIECESQEMNFGKK 74 (96)
T ss_dssp TEEEEEESCHHHHHHHHHHHTCSSCBTTT
T ss_pred CEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 48999999999999999999999988644
No 34
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.61 E-value=0.38 Score=31.16 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=28.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+. .|-++|
T Consensus 56 ~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~ 88 (102)
T 2fc8_A 56 FGFVDFNSEEDAKAAKEAMEDGEIDGN--KVTLDW 88 (102)
T ss_dssp EEEEECSSHHHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCeECCe--EEEEEE
Confidence 899999999999999999999998864 344444
No 35
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.60 E-value=0.41 Score=30.97 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=26.1
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
=||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 59 g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 59 GLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 48999999999999999999999987643
No 36
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=88.60 E-value=0.53 Score=30.63 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=26.0
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
=||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 66 g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 66 GYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp EEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred eEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 48999999999999999999999888643
No 37
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=88.58 E-value=0.46 Score=30.52 Aligned_cols=34 Identities=24% Similarity=0.249 Sum_probs=28.5
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
=||.|+|.+.+.|.+..+.++|..+.+.. |-+++
T Consensus 58 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~--l~V~~ 91 (98)
T 2cqp_A 58 GEAMVAFESRDEATAAVIDLNDRPIGSRK--VKLVL 91 (98)
T ss_dssp EEEEEEESCHHHHHHHHHHTTTCEETTEE--CEEEE
T ss_pred eEEEEEECCHHHHHHHHHHhCCCeeCCeE--EEEEE
Confidence 48999999999999999999999988743 44444
No 38
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.57 E-value=0.51 Score=31.19 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=27.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+. .|-++|
T Consensus 69 ~afV~f~~~~~a~~Ai~~l~g~~~~g~--~l~v~~ 101 (115)
T 2cpx_A 69 QAFITFPNKEIAWQALHLVNGYKLYGK--ILVIEF 101 (115)
T ss_dssp EEEEECSSHHHHHHHHHHSTTCBCSSC--BCEEEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEeCCc--EEEEEE
Confidence 899999999999999999999998653 444444
No 39
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.52 E-value=0.49 Score=30.45 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=26.4
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
=||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 53 g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (99)
T 2div_A 53 GYCFVEFADLATAEKCLHKINGKPLPGAT 81 (99)
T ss_dssp EEEEEECSCHHHHHHHHHTTTTSEESSCS
T ss_pred CEEEEEeCCHHHHHHHHHHHcCCccCCCC
Confidence 38999999999999999999999988755
No 40
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.52 E-value=0.42 Score=33.82 Aligned_cols=37 Identities=22% Similarity=0.437 Sum_probs=29.9
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccc---ccccccccccccC
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEY---ESSATRVDLRFVP 82 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~---e~s~~~lDLRFVP 82 (130)
||.|+|.+.+.|.+..++++|.++ .+.+..|-+.|+-
T Consensus 65 faFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 65 YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 104 (114)
T ss_dssp CEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEES
T ss_pred EEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecc
Confidence 899999999999999999999988 2234556666654
No 41
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=88.51 E-value=0.47 Score=32.08 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=29.1
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccccC
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVP 82 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVP 82 (130)
=||-|+|.+.+.|.+..++++|..|.+- .+-..|.|
T Consensus 69 G~~fV~f~~~~~A~~A~~~lng~~~~Gr--~i~v~~sp 104 (104)
T 1jmt_A 69 GNVYVKFRREEDAEKAVIDLNNRWFNGQ--PIHAELSP 104 (104)
T ss_dssp EEEEEEESCHHHHHHHHHHHTTCEETTE--ECCEEECC
T ss_pred EEEEEEECCHHHHHHHHHHHCCCEECCE--EEEEEEcC
Confidence 3899999999999999999999998764 34444443
No 42
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.44 E-value=0.22 Score=31.27 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=24.2
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYES 71 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~ 71 (130)
||.|+|.+.+.|.+..+.++|..+.+
T Consensus 49 ~afV~f~~~~~a~~A~~~l~g~~~~g 74 (85)
T 1x4e_A 49 YGFVDFDSPSAAQKAVTALKASGVQA 74 (85)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCCE
T ss_pred EEEEEECCHHHHHHHHHHhcCCeEee
Confidence 79999999999999999999998765
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=88.39 E-value=0.45 Score=31.56 Aligned_cols=28 Identities=21% Similarity=0.457 Sum_probs=25.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 63 ~afV~f~~~~~A~~Ai~~lng~~~~gr~ 90 (99)
T 4fxv_A 63 YGFVNYVTAKDAERAINTLNGLRLQSKT 90 (99)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 8999999999999999999999998743
No 44
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.36 E-value=0.5 Score=30.57 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=25.7
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 58 ~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (97)
T 2e5j_A 58 RAFLHYPDSAAAQQAVSCLQGLRLGTDT 85 (97)
T ss_dssp EEEEECSSHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 8999999999999999999999987644
No 45
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.31 E-value=0.37 Score=30.76 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=28.1
Q ss_pred eeEEEEeCCHHHHHHHHHhcCC-cccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDG-MEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG-~E~e~s~~~lDLRF 80 (130)
=||.|+|.+.+.|.+..+.++| ..+.+. .|-+++
T Consensus 45 g~afV~f~~~~~A~~A~~~l~g~~~~~g~--~l~v~~ 79 (93)
T 2cqh_A 45 GYAFVDYPDQNWAIRAIETLSGKVELHGK--IMEVDY 79 (93)
T ss_dssp TEEEECCSCHHHHHHHHHHHTTTCEETTE--ECEEEE
T ss_pred CEEEEEECCHHHHHHHHHHccCCeeECCE--EEEEEE
Confidence 3899999999999999999999 888764 344443
No 46
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.29 E-value=0.44 Score=31.51 Aligned_cols=28 Identities=21% Similarity=0.356 Sum_probs=25.7
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 67 ~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (113)
T 2cpe_A 67 DATVSYEDPPTAKAAVEWFDGKDFQGSK 94 (113)
T ss_dssp EEEEEBSSHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEEECCHHHHHHHHHHcCCCccCCCE
Confidence 8999999999999999999999988633
No 47
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.29 E-value=0.72 Score=29.87 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=25.9
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcc-ccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGME-YESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E-~e~s~ 73 (130)
=||.|+|.+.+.|.+..+.++|.. +.+..
T Consensus 52 g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 52 GYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp EEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred ceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 389999999999999999999999 77643
No 48
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=88.27 E-value=0.49 Score=30.75 Aligned_cols=33 Identities=15% Similarity=0.386 Sum_probs=27.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+.. |-+++
T Consensus 57 ~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~v~~ 89 (103)
T 2cq3_A 57 FGFVTFENSADADRAREKLHGTVVEGRK--IEVNN 89 (103)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEETTEE--CEEEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCEE--EEEEE
Confidence 8999999999999999999999987643 44443
No 49
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=88.24 E-value=0.5 Score=31.30 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=29.3
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
||.|+|.+.+.|.+..+.++|..+.+ ..|-++|-
T Consensus 59 ~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~a 92 (115)
T 2dgo_A 59 YGFVSFFNKWDAENAIQQMGGQWLGG--RQIRTNWA 92 (115)
T ss_dssp EEEEEESSHHHHHHHHHHTTTCEETT--EECEEEES
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEEc
Confidence 99999999999999999999999887 44555554
No 50
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.21 E-value=0.41 Score=30.45 Aligned_cols=33 Identities=21% Similarity=0.460 Sum_probs=28.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+. .|-+++
T Consensus 45 ~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~ 77 (90)
T 2dnp_A 45 YAFVHMEKEADAKAAIAQLNGKEVKGK--RINVEL 77 (90)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCc--EEEEEE
Confidence 999999999999999999999998764 344444
No 51
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=88.21 E-value=0.43 Score=30.49 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=28.3
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
=||.|+|.|.+.|.+..+.++|..+.+ ..|-++|
T Consensus 52 g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~v~~ 85 (97)
T 1nu4_A 52 GQAFVIFKEVSSATNALRSMQGFPFYD--KPMRIQY 85 (97)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCEETT--EECEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHhCCCEECC--cEEEEEE
Confidence 489999999999999999999999865 4454444
No 52
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.19 E-value=0.4 Score=31.07 Aligned_cols=33 Identities=30% Similarity=0.542 Sum_probs=27.9
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+. .|-++|
T Consensus 55 ~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~ 87 (101)
T 2fc9_A 55 YAFIEFASFEDAKEALNSCNKREIEGR--AIRLEL 87 (101)
T ss_dssp EEEEECSSHHHHHHHHHHTSSEEETTE--EEEEEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEeCCe--EEEEEE
Confidence 899999999999999999999999863 344443
No 53
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=88.16 E-value=0.31 Score=31.24 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=24.7
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+.-+.++|.++.+..
T Consensus 47 ~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 74 (90)
T 3p5t_L 47 FALVGVGSEASSKKLMDLLPKRELHGQN 74 (90)
T ss_dssp EEEECC-CHHHHHHHHHHGGGSCSSSCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCeeCCEE
Confidence 8999999999999999999999987744
No 54
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.89 E-value=0.57 Score=30.45 Aligned_cols=33 Identities=21% Similarity=0.214 Sum_probs=27.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+. .|-+++
T Consensus 59 ~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~ 91 (105)
T 1x5u_A 59 YGFVEFLSEEDADYAIKIMDMIKLYGK--PIRVNK 91 (105)
T ss_dssp CEEEEESSHHHHHHHHHHSSSCBCSSC--BCEEEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCeECCe--EEEEEE
Confidence 899999999999999999999998763 344443
No 55
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.84 E-value=0.39 Score=31.10 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=28.3
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
-||.|+|.+.+.|.+..+.++|..+.+. .|-++|
T Consensus 55 g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~ 88 (102)
T 2cqb_A 55 GFAFVEFELAEDAAAAIDNMNESELFGR--TIRVNL 88 (102)
T ss_dssp SEEEECCSSHHHHHHHHHHHTTEEETTE--EEEEEE
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCc--EEEEEe
Confidence 3899999999999999999999998764 444444
No 56
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=87.79 E-value=0.5 Score=30.98 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=25.7
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
=||.|+|.+.+.|.+..+.++|..+.+.
T Consensus 58 g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 85 (97)
T 2xnq_A 58 AFGFIQFDNPQSVRDAIEXESQEMNFGK 85 (97)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4899999999999999999999998764
No 57
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=87.78 E-value=0.61 Score=30.17 Aligned_cols=28 Identities=32% Similarity=0.404 Sum_probs=25.6
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 65 ~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 92 (99)
T 2la6_A 65 EATVSFDDPPSAKAAIDWFDGKEFSGNP 92 (99)
T ss_dssp EEEEEBSSHHHHHHHHHHHTTCBSSSSB
T ss_pred EEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 8999999999999999999999987643
No 58
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=87.76 E-value=0.46 Score=31.09 Aligned_cols=34 Identities=29% Similarity=0.589 Sum_probs=29.1
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
||.|+|.+.+.|.+..+.++|..+.+. .|-++|-
T Consensus 47 ~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a 80 (103)
T 2dgu_A 47 YAFIHFDERDGAVKAMEEMNGKDLEGE--NIEIVFA 80 (103)
T ss_dssp CEEEEESSHHHHHHHHHHHTTEEETTE--EEEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHHCCCccCCC--EEEEEEc
Confidence 899999999999999999999998864 4555554
No 59
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=87.72 E-value=0.64 Score=30.17 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=28.5
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
-||.|+|.+.+.|.+..+.++|..+.+ ..|-++|
T Consensus 56 g~afV~f~~~~~A~~A~~~l~g~~~~g--~~l~V~~ 89 (103)
T 2d9p_A 56 GFGFVCFSSPEEATKAVTEMNGRIVAT--KPLYVAL 89 (103)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCBSSS--SBCEEEE
T ss_pred EEEEEEECCHHHHHHHHHHhCCCEeCC--cEEEEEE
Confidence 399999999999999999999999866 4455444
No 60
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=87.70 E-value=0.53 Score=30.92 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=26.1
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
=||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 69 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 69 GYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 38999999999999999999999987643
No 61
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.69 E-value=0.53 Score=30.57 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=28.9
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
-||.|+|.+.+.|.+..+.++|..+.+ ..|-++|
T Consensus 56 g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~V~~ 89 (103)
T 2cqi_A 56 PYCFVEFYEHRDAAAALAAMNGRKILG--KEVKVNW 89 (103)
T ss_dssp CEEEEEESSHHHHHHHHHHHTTEEETT--EEEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHhCCCCcCC--CeEEEEE
Confidence 499999999999999999999999886 4455554
No 62
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=87.67 E-value=0.65 Score=32.31 Aligned_cols=28 Identities=25% Similarity=0.548 Sum_probs=25.7
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 90 ~afV~F~~~~~A~~Ai~~lng~~i~g~~ 117 (129)
T 2kxn_B 90 FAFVYFENVDDAKEAKERANGMELDGRR 117 (129)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 8999999999999999999999987643
No 63
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=87.63 E-value=0.49 Score=31.46 Aligned_cols=33 Identities=18% Similarity=0.429 Sum_probs=27.9
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+. .|-++|
T Consensus 69 ~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~V~~ 101 (115)
T 2cpz_A 69 FGFVSYDNPVSAQAAIQSMNGFQIGMK--RLKVQL 101 (115)
T ss_dssp EEEEECSSHHHHHHHHHHHTTCEETTE--ECEEEC
T ss_pred cEEEEECCHHHHHHHHHHcCCCEECCE--EEEEEE
Confidence 899999999999999999999998764 344443
No 64
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=87.51 E-value=0.42 Score=30.59 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=25.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 55 ~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 55 IAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp EEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 8999999999999999999999987644
No 65
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.51 E-value=0.55 Score=31.00 Aligned_cols=35 Identities=26% Similarity=0.313 Sum_probs=29.2
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
=||.|+|.+.+.|.+..+.++|..+.+ ..|-++|-
T Consensus 62 g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~a 96 (109)
T 1x4g_A 62 GYSFVRFSTHESAAHAIVSVNGTTIEG--HVVKCYWG 96 (109)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCEETT--EECEEECC
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECC--cEEEEEec
Confidence 489999999999999999999999886 44555553
No 66
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=87.50 E-value=0.68 Score=30.12 Aligned_cols=36 Identities=14% Similarity=0.074 Sum_probs=28.4
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccc-ccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEY-ESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~-e~s~~~lDLRF 80 (130)
=||.|+|.+.+.|.+..+.++|..+ .+....|-+++
T Consensus 56 g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~ 92 (106)
T 2dgp_A 56 GCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKP 92 (106)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred eEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEE
Confidence 3899999999999999999999885 33344555554
No 67
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=87.50 E-value=0.58 Score=30.41 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=29.0
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccc-cccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESS-ATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s-~~~lDLRF 80 (130)
=||.|+|.+.+.|.+..+.++|..+.+. ...|-++|
T Consensus 57 g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~ 93 (105)
T 2dnh_A 57 GCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKF 93 (105)
T ss_dssp EEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEE
Confidence 4899999999999999999999998762 24444444
No 68
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=87.49 E-value=0.5 Score=32.09 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=26.6
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSAT 74 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~ 74 (130)
||.|+|.+.+.|.+..++++|.++.+...
T Consensus 50 ~aFV~f~~~~~A~~Ai~~lng~~~~gr~i 78 (110)
T 3s8s_A 50 LARVLFTSTRGAKETVKNLHLTSVMGNII 78 (110)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 79999999999999999999999987553
No 69
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=87.46 E-value=0.58 Score=31.00 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=25.5
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 49 ~afV~f~~~~~A~~A~~~l~g~~~~g~~ 76 (115)
T 3lqv_A 49 TAYVVYEDIFDAKNAVDHLSGFNVSNRY 76 (115)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSSSCB
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 8999999999999999999999987643
No 70
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=87.38 E-value=0.46 Score=30.24 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=25.6
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
=||.|+|.+.+.|.+..+.++|..+.+.
T Consensus 58 g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (95)
T 2ywk_A 58 SFGFVCFKHPESVSYAIALLNGIRLYGR 85 (95)
T ss_dssp EEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence 3899999999999999999999998763
No 71
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.34 E-value=0.51 Score=30.53 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=27.9
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+. .|-++|
T Consensus 53 ~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~ 85 (99)
T 2cpd_A 53 YAFVHFSNREDAVEAMKALNGKVLDGS--PIEVTL 85 (99)
T ss_dssp EEEEEESSHHHHHHHHHHHSSEEETTE--EEEEEC
T ss_pred eEEEEeCCHHHHHHHHHHhCCCEeCCc--EEEEEE
Confidence 999999999999999999999998764 344443
No 72
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.26 E-value=0.71 Score=29.96 Aligned_cols=34 Identities=18% Similarity=0.326 Sum_probs=28.8
Q ss_pred eEEEEeCCHHHHHHHHHhc-CCccccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTEC-DGMEYESSATRVDLRFV 81 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~-dG~E~e~s~~~lDLRFV 81 (130)
||.|+|.+.+.|.+..+.+ +|..+.+. .|-++|-
T Consensus 60 ~afV~f~~~~~a~~A~~~l~~~~~~~g~--~l~v~~a 94 (107)
T 2cph_A 60 FGFVDFITKQDAKKAFNALCHSTHLYGR--RLVLEWA 94 (107)
T ss_dssp EEEEEESSHHHHHHHHHHHHTCCBSSSC--BCEEEEC
T ss_pred eEEEEECCHHHHHHHHHHhccCCeECCC--EEEEEeC
Confidence 8999999999999999999 99999864 4555543
No 73
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=87.21 E-value=0.61 Score=29.64 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=26.0
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
=||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 58 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 58 GEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred eEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 48999999999999999999999987643
No 74
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=87.16 E-value=0.73 Score=30.84 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=27.7
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+. .|-+++
T Consensus 70 ~afV~F~~~~~A~~Ai~~l~g~~i~g~--~l~V~~ 102 (108)
T 2jrs_A 70 YGFITFSDSECAKKALEQLNGFELAGR--PMKVGH 102 (108)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCCSSSS--CCEEEC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCE--EEEEEE
Confidence 899999999999999999999988764 344443
No 75
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.08 E-value=0.56 Score=30.91 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=28.8
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
-||.|+|.+.+.|.+..+.++|..+.+. .|-+++
T Consensus 57 g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~ 90 (114)
T 2do0_A 57 GIGTVTFEQSIEAVQAISMFNGQLLFDR--PMHVKM 90 (114)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEeCCC--EEEEEE
Confidence 3899999999999999999999999764 455554
No 76
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=87.03 E-value=0.55 Score=30.92 Aligned_cols=33 Identities=27% Similarity=0.572 Sum_probs=27.7
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+. .|-++|
T Consensus 63 ~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~ 95 (109)
T 1x4a_A 63 FAFVEFEDPRDAEDAVYGRDGYDYDGY--RLRVEF 95 (109)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCEETTE--ECEEEC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCe--EEEEEE
Confidence 899999999999999999999988763 344444
No 77
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.95 E-value=0.65 Score=31.25 Aligned_cols=38 Identities=18% Similarity=0.236 Sum_probs=32.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCCC
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDT 85 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~ 85 (130)
||.|+|.+.+.|.+..+.++|..+.+ ..|-+.|-+...
T Consensus 48 ~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~~~ 85 (111)
T 1whx_A 48 TAIVEFLEPLEARKAFRHLAYSKFHH--VPLYLEWAPIGV 85 (111)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCBSSS--SBCEEEEEETTT
T ss_pred EEEEEeCCHHHHHHHHHHhCCCEECC--eEEEEEECCCCc
Confidence 79999999999999999999999886 446666666654
No 78
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.93 E-value=0.55 Score=30.48 Aligned_cols=27 Identities=19% Similarity=0.122 Sum_probs=25.2
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+..+.++|.++.+.
T Consensus 54 ~afV~f~~~~~A~~Ai~~l~g~~~~gr 80 (96)
T 2dgx_A 54 KAVVQMENLQDAIGAVNSLHRYKIGSK 80 (96)
T ss_dssp CEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 799999999999999999999998864
No 79
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=86.92 E-value=0.71 Score=30.48 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=25.1
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+..+.++|..+.+.
T Consensus 68 ~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 68 VGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp EEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred EEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 899999999999999999999998653
No 80
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.92 E-value=0.6 Score=30.91 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=25.7
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYES 71 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~ 71 (130)
=||.|+|.+.+.|.+.-+.++|.++.+
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 599999999999999999999999987
No 81
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=86.82 E-value=0.58 Score=29.57 Aligned_cols=28 Identities=7% Similarity=0.229 Sum_probs=25.0
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
=||.|+|.+.+ |.+....++|..+.+..
T Consensus 44 g~afV~f~~~~-a~~a~~~l~g~~~~g~~ 71 (90)
T 2ki2_A 44 GFGFVEMQEES-VSEAIAKLDNTDFMGRT 71 (90)
T ss_dssp EEEEEEECTTH-HHHHHHTSCSSCCSSSS
T ss_pred eEEEEEECCHH-HHHHHHHhCCCEECCeE
Confidence 38999999999 99999999999987643
No 82
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=86.79 E-value=0.66 Score=29.99 Aligned_cols=28 Identities=11% Similarity=0.218 Sum_probs=25.6
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
=||.|+|.+.+.|.+..+.++|..+.+.
T Consensus 64 g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 64 GCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 4899999999999999999999998864
No 83
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=86.67 E-value=0.61 Score=31.59 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=25.7
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 131 ~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 131 YGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 8999999999999999999999987643
No 84
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=86.67 E-value=0.53 Score=30.45 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=29.4
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
=||.|+|.+.+.|.+..+.++|..+.+ ..|-++|-
T Consensus 52 g~afV~f~~~~~a~~a~~~l~g~~~~g--~~l~v~~a 86 (99)
T 2cpj_A 52 GFGFIRLETRTLAEIAKVELDNMPLRG--KQLRVRFA 86 (99)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCCBTT--BCCEEEES
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEeCC--ceEEEEEc
Confidence 389999999999999999999999886 44555553
No 85
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=86.65 E-value=0.58 Score=32.35 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=26.2
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+.+||.++.+..
T Consensus 69 faFV~F~~~e~A~~Ai~~lng~~l~Gr~ 96 (111)
T 2jvr_A 69 TGALEFPSEEILVEALERLNNIEFRGSV 96 (111)
T ss_dssp CEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 8999999999999999999999998754
No 86
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=86.60 E-value=1.2 Score=29.99 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=30.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCC
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPD 83 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPD 83 (130)
||.|+|.+.+.|.+..+.++|..+.+ ..|-+++-..
T Consensus 78 ~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a~~ 113 (124)
T 2kt5_A 78 TADVHFERRADALKAMKQYKGVPLDG--RPMDIQLVAS 113 (124)
T ss_dssp EEEEEESSHHHHHHHHHHHTTEESSS--CEEEEEEECC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECC--cEEEEEEeCC
Confidence 89999999999999999999999876 4455555443
No 87
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.29 E-value=0.76 Score=28.58 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=25.4
Q ss_pred eeEEEEeCCHHHHHHHHHhc-CCcccccc
Q psy7101 45 YYAVVVFDSAESANKVYTEC-DGMEYESS 72 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~-dG~E~e~s 72 (130)
=||.|+|.+.+.|.+..+.+ +|..+.+.
T Consensus 49 g~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 49 QCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp TEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 38999999999999999999 99988763
No 88
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.22 E-value=0.39 Score=31.27 Aligned_cols=34 Identities=21% Similarity=0.357 Sum_probs=28.2
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
=||.|+|.+.+.|.+..+.++|..+.+. .|-+++
T Consensus 56 g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~ 89 (103)
T 2dnm_A 56 GFAFVRFHDRRDAQDAEAAMDGAELDGR--ELRVQV 89 (103)
T ss_dssp SCEEEEESSSSHHHHHHHHHSSCCBTTB--CCEEEE
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCc--EEEEEE
Confidence 3899999999999999999999998764 344444
No 89
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=86.18 E-value=0.68 Score=31.64 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=28.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+.. |-+++
T Consensus 86 ~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~v~~ 118 (139)
T 1u6f_A 86 YGFVKFQSGSSAQQAIAGLNGFNILNKR--LKVAL 118 (139)
T ss_dssp EEEEEESSHHHHHHHHHHTTTEECSSCE--EEEEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCeE--EEEEE
Confidence 8999999999999999999999988643 44443
No 90
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=85.98 E-value=0.69 Score=32.43 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=29.3
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
=||.|+|.+.+.|.+..+.|+|..+.+ ..|-+.+-
T Consensus 82 g~afV~f~~~~~A~~Ai~~l~g~~~~g--~~l~V~~a 116 (156)
T 1h2v_Z 82 GFCFVEYYSRADAENAMRYINGTRLDD--RIIRTDWD 116 (156)
T ss_dssp EEEEEEESSHHHHHHHHHHTTTSEETT--EECEEEEE
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECC--eEEEEEEC
Confidence 389999999999999999999999976 44555554
No 91
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=85.95 E-value=0.82 Score=30.01 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=25.3
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYES 71 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~ 71 (130)
=||.|+|.+.+.|.+.-+.++|..+.+
T Consensus 55 G~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 55 GFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred eEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 389999999999999999999999986
No 92
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=85.66 E-value=0.71 Score=30.98 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=26.0
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
=||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 66 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 94 (108)
T 2jvo_A 66 GFAFVEFEEAESAAKAIEEVHGKSFANQP 94 (108)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 48999999999999999999999996643
No 93
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=85.29 E-value=0.48 Score=30.70 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=28.6
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
-||.|+|.+.+.|.+..+.++|..+.+.. |-+++
T Consensus 38 g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~V~~ 71 (101)
T 2hvz_A 38 GFAFVEFEDPRDAEDAVRGLDGKVICGSR--VRVEL 71 (101)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHSCSSSCC--CEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHCCCeECCcE--EEEEE
Confidence 48999999999999999999999987654 44444
No 94
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=85.27 E-value=0.64 Score=31.44 Aligned_cols=28 Identities=25% Similarity=0.242 Sum_probs=25.6
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
=||.|+|.+.+.|.+..+.++|..+.+.
T Consensus 106 g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 106 GFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp SEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred cEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4899999999999999999999998764
No 95
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=85.25 E-value=0.86 Score=30.66 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=26.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+.-++++|..+.+..
T Consensus 47 ~afV~f~~~~~A~~Ai~~l~~~~~~g~~ 74 (115)
T 4f25_A 47 YGFVHFETQEAAERAIEKMNGMLLNDRK 74 (115)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred eEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 8999999999999999999999998754
No 96
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=85.05 E-value=0.85 Score=30.39 Aligned_cols=28 Identities=14% Similarity=0.115 Sum_probs=25.9
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
-||.|+|.+.+.|.+.-+.++|..+.+.
T Consensus 64 G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 64 ASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred eEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 4999999999999999999999998764
No 97
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.95 E-value=1.7 Score=29.00 Aligned_cols=41 Identities=20% Similarity=0.283 Sum_probs=32.9
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCCCCcC
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFD 88 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd~~Fd 88 (130)
||.|+|.+.+.|.+..+.++|..+.+ ..|-+.|-..-..|.
T Consensus 66 ~afV~f~~~~~A~~Ai~~lng~~~~g--r~l~v~~a~~~~~~~ 106 (112)
T 2dit_A 66 VASVSFRDPEEADYCIQTLDGRWFGG--RQITAQAWDGTTDYQ 106 (112)
T ss_dssp EEEEECSCHHHHHHHHHHSTTCEETT--EECEEEECCSCCCSS
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECC--cEEEEEEeCCCCCcc
Confidence 79999999999999999999999875 556666654444443
No 98
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=84.88 E-value=0.57 Score=31.15 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=25.7
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 84 ~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 84 FGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp EEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 8999999999999999999999987643
No 99
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=84.84 E-value=0.61 Score=30.81 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=28.7
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
=||.|+|.+.+.|.+..++++|..+.+. .|-+++
T Consensus 63 g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~V~~ 96 (110)
T 1wf1_A 63 GYAFVQYSNERHARAAVLGENGRVLAGQ--TLDINM 96 (110)
T ss_dssp TEEEEECSSSHHHHHHHHHHTTCEETTE--ECCEEE
T ss_pred CEEEEEECCHHHHHHHHHHcCCCEECCe--EEEEEE
Confidence 4899999999999999999999998764 455544
No 100
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.65 E-value=0.93 Score=29.24 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=27.7
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+ ..|-+.|
T Consensus 51 ~afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~v~~ 83 (97)
T 1x5p_A 51 CAFVTYEKMESADQAVAELNGTQVES--VQLKVNI 83 (97)
T ss_dssp EEEEEESSHHHHHHHHHHTTTEEETT--EEEEEEC
T ss_pred EEEEEECCHHHHHHHHHHhCCCeECC--eEEEEEE
Confidence 79999999999999999999999865 3444444
No 101
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.45 E-value=2.3 Score=27.17 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=25.1
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+.-+ ++|..+.+..
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~ 73 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHR 73 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEE
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEE
Confidence 99999999999999999 9999998754
No 102
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=84.10 E-value=0.69 Score=30.83 Aligned_cols=29 Identities=17% Similarity=0.338 Sum_probs=26.1
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
-||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 70 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 98 (109)
T 2err_A 70 GFGFVTFENSADADRAREKLHGTVVEGRK 98 (109)
T ss_dssp TEEEEECCCSHHHHHHHHHHTTCEETTEE
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 38999999999999999999999987643
No 103
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=84.08 E-value=1.2 Score=29.08 Aligned_cols=27 Identities=7% Similarity=0.128 Sum_probs=24.4
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+.. +++|..+.+..
T Consensus 63 ~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 63 FGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp CEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred EEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 8999999999999999 99999987643
No 104
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=84.06 E-value=1 Score=28.57 Aligned_cols=26 Identities=19% Similarity=0.381 Sum_probs=24.2
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+..+ ++|..+.+-
T Consensus 52 ~afV~f~~~~~a~~A~~-~~g~~~~gr 77 (91)
T 2dgw_A 52 YIFVDFSNEEEVKQALK-CNREYMGGR 77 (91)
T ss_dssp EEEEECSSHHHHHHHHH-SCSEEETTE
T ss_pred EEEEEECCHHHHHHHHH-hCCceeCCc
Confidence 89999999999999999 999998764
No 105
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=83.84 E-value=0.99 Score=27.45 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.9
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.|.+.|.+.-+ ++|..+.+..
T Consensus 43 ~afV~f~~~~~a~~a~~-~~~~~~~g~~ 69 (75)
T 2mss_A 43 FGFVTFESEDIVEKVCE-IHFHEINNKM 69 (75)
T ss_dssp EEEEECSCHHHHHHHHS-SSCCCSSSCC
T ss_pred EEEEEECCHHHHHHHHH-CCCCEECCEE
Confidence 89999999999999987 9999887643
No 106
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=83.79 E-value=0.77 Score=28.73 Aligned_cols=27 Identities=19% Similarity=0.300 Sum_probs=24.3
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+.. .++|..+.+..
T Consensus 50 ~afV~f~~~~~a~~a~-~~~g~~~~g~~ 76 (89)
T 3ucg_A 50 FAYIEFSDKESVRTSL-ALDESLFRGRQ 76 (89)
T ss_dssp EEEEEESSTHHHHHHG-GGTTCEETTEE
T ss_pred EEEEEECCHHHHHHHH-hcCCCEECCcE
Confidence 8999999999999999 99999987643
No 107
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=83.76 E-value=0.94 Score=32.27 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=26.2
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
=||.|+|.+.+.|.+..+.|+|..+.+..
T Consensus 115 g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 143 (165)
T 1rk8_A 115 GYALVEYETHKQALAAKEALNGAEIMGQT 143 (165)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 38999999999999999999999997644
No 108
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=83.71 E-value=1.2 Score=30.36 Aligned_cols=35 Identities=14% Similarity=0.215 Sum_probs=28.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccc-ccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYES-SATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~-s~~~lDLRF 80 (130)
||.|+|.+.+.|.+.-+.++|..+.. ++..|-++|
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 138 CAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp EEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred EEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 79999999999999999999987764 344454443
No 109
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=83.46 E-value=1.1 Score=31.49 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=25.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|....+.++|..+.+..
T Consensus 74 ~aFV~F~~~~~A~~Ai~~lng~~l~gr~ 101 (127)
T 2a3j_A 74 KAYIVFATQESAQAFVEAFQGYPFQGNP 101 (127)
T ss_dssp CEEEEESSHHHHHHHHHHSTTCCCTTSC
T ss_pred EEEEEECCHHHHHHHHHHHCCCEeCCCE
Confidence 8999999999999999999999988753
No 110
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=83.42 E-value=1.2 Score=28.80 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.3
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+ ++|..+.+..
T Consensus 60 ~afV~f~~~~~a~~A~~-l~g~~~~g~~ 86 (101)
T 1fj7_A 60 FGYVDFESAEDLEKALE-LTGLKVFGNE 86 (101)
T ss_dssp EEEEEESSHHHHHHHHH-GGGCCBTTBC
T ss_pred EEEEEECCHHHHHHHHh-cCCcEECCcE
Confidence 89999999999999998 9999988643
No 111
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=82.77 E-value=1.2 Score=29.88 Aligned_cols=32 Identities=16% Similarity=0.281 Sum_probs=26.6
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+.. +++|..+.+.. |-+++
T Consensus 80 ~afV~f~~~~~a~~A~-~l~g~~~~g~~--l~V~~ 111 (124)
T 2jwn_A 80 YAYIEFAERNSVDAAV-AMDETVFRGRT--IKVLP 111 (124)
T ss_dssp EEEEEESSHHHHHHHH-TTTTCEETTEE--CEEEE
T ss_pred EEEEEECCHHHHHHHH-hcCCCeECCeE--EEEEE
Confidence 8999999999999999 89999987643 44444
No 112
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=82.77 E-value=1.2 Score=33.23 Aligned_cols=33 Identities=9% Similarity=0.041 Sum_probs=29.4
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVD 77 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lD 77 (130)
=||.|+|.+.+.|.+.-..|+|.++.+....-.
T Consensus 166 g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 166 SSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp EEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred eEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 499999999999999999999999998875543
No 113
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=82.72 E-value=1.2 Score=30.14 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=29.9
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccccC
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVP 82 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVP 82 (130)
=||-|+|.+.+.|.+..++++|..|.+ ..+-..|.+
T Consensus 57 G~~FV~f~~~~~A~~Ai~~lnG~~~~G--r~i~v~~a~ 92 (105)
T 2pe8_A 57 VRIFLEFERVESAIKAVVDLNGRYFGG--RVVKACFYN 92 (105)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEECC
T ss_pred EEEEEEECCHHHHHHHHHHHCCCEECC--cEEEEEEcC
Confidence 489999999999999999999999976 445555544
No 114
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=82.69 E-value=1.3 Score=30.44 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=27.6
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+. .|-+.|
T Consensus 75 ~aFV~f~~~~~A~~Ai~~lng~~~~g~--~l~V~~ 107 (121)
T 2bz2_A 75 CAFVTYEKMESADQAVAELNGTQVESV--QLKVNI 107 (121)
T ss_dssp EEEEECSSHHHHHHHHHHHTTCBCSSC--BCEEEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCe--EEEEEE
Confidence 899999999999999999999998653 344443
No 115
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.34 E-value=1.6 Score=28.03 Aligned_cols=28 Identities=7% Similarity=0.184 Sum_probs=24.7
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
=||.|+|.+.+.|.+..+ ++|..+.+..
T Consensus 53 g~afV~f~~~~~a~~A~~-~~~~~~~g~~ 80 (99)
T 2dgs_A 53 GFGFITFEDEQSVDQAVN-MHFHDIMGKK 80 (99)
T ss_dssp SEEEEEESSHHHHHHHHH-HCCCBSSSCB
T ss_pred ceEEEEECCHHHHHHHHH-hCCCEECCeE
Confidence 389999999999999998 9999887643
No 116
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=82.30 E-value=1.4 Score=28.76 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=25.5
Q ss_pred eEEEEeCCHHHHHHHHHhcC------Cccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECD------GMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~d------G~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+.++ |..+.+..
T Consensus 59 ~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 59 CAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp EEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred EEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 89999999999999999999 99887643
No 117
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=82.25 E-value=0.73 Score=30.42 Aligned_cols=28 Identities=18% Similarity=0.318 Sum_probs=25.8
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
=||.|+|.+.+.|.+.-+.++|..+.+.
T Consensus 62 G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 62 GYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred eEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3899999999999999999999999864
No 118
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=82.02 E-value=1.2 Score=28.90 Aligned_cols=27 Identities=22% Similarity=0.391 Sum_probs=24.4
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+.. +++|..+.+..
T Consensus 58 ~afV~f~~~~~a~~A~-~l~g~~~~g~~ 84 (103)
T 2dng_A 58 FCYVEFDEVDSLKEAL-TYDGALLGDRS 84 (103)
T ss_dssp EEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred EEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence 8999999999999999 99999987643
No 119
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=82.02 E-value=1.4 Score=29.85 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=30.7
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccccCC
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPD 83 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPD 83 (130)
=||-|+|.+.+.|.+..++++|..|.+ ..+-..|.|.
T Consensus 60 G~~fV~f~~~~~A~~Ai~~lnG~~f~G--R~i~v~~~~~ 96 (105)
T 3v4m_A 60 GKIFVEFTSVFDCQKAMQGLTGRKFAN--RVVVTKYCDP 96 (105)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEECH
T ss_pred EEEEEEECCHHHHHHHHHHhCCCEeCC--CEEEEEEeCH
Confidence 489999999999999999999999976 4465666543
No 120
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=81.52 E-value=1.8 Score=30.80 Aligned_cols=34 Identities=9% Similarity=0.204 Sum_probs=28.4
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
-||.|+|.+.+.|.+..+.++|..+.+.. |-++|
T Consensus 168 g~afV~F~~~~~A~~A~~~l~g~~~~g~~--i~V~~ 201 (216)
T 2qfj_A 168 GYGFIEYEKAQSSQDAVSSMNLFDLGGQY--LRVGK 201 (216)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCBCSSSB--CEEEE
T ss_pred ceEEEEecCHHHHHHHHHHccCCEeCCcE--EEEEE
Confidence 38999999999999999999999987644 44443
No 121
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=81.37 E-value=1.5 Score=31.62 Aligned_cols=28 Identities=29% Similarity=0.309 Sum_probs=25.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+.-+.++|.++.+-.
T Consensus 101 faFV~f~~~~~A~~Ai~~lng~~~~Gr~ 128 (156)
T 3n9u_C 101 YAEVVVASENSVHKLLELLPGKVLNGEK 128 (156)
T ss_dssp EEEEEESCHHHHHHHHHHSTTCEETTEE
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 8999999999999999999999988743
No 122
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.36 E-value=1.2 Score=28.95 Aligned_cols=27 Identities=7% Similarity=0.132 Sum_probs=24.4
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+.. +++|..+.+..
T Consensus 59 ~afV~f~~~~~a~~A~-~l~g~~~~g~~ 85 (104)
T 1wi8_A 59 FGYAEFEDLDSLLSAL-SLNEESLGNKR 85 (104)
T ss_dssp CEEEEESSHHHHHHHH-GGGTCEETTEE
T ss_pred EEEEEECCHHHHHHHH-hcCCCEeCCcE
Confidence 8999999999999999 99999987643
No 123
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=81.08 E-value=1.3 Score=30.50 Aligned_cols=28 Identities=18% Similarity=0.220 Sum_probs=25.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 94 ~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 94 QAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp EEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred EEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 9999999999999999999999997644
No 124
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=80.67 E-value=1.2 Score=32.57 Aligned_cols=44 Identities=14% Similarity=0.335 Sum_probs=33.7
Q ss_pred hhcHHHHHHHHHhh-------hc-------eeeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101 28 AYHREKLRQYQLNR-------LK-------YYYAVVVFDSAESANKVYTECDGMEYES 71 (130)
Q Consensus 28 ~~~~e~lR~Yq~~r-------lr-------YyyAVvecds~~tA~~iY~e~dG~E~e~ 71 (130)
-++...+|..-... ++ +==|||||.++++|-+.-=++||.+|.+
T Consensus 32 tvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~g 89 (117)
T 2l9w_A 32 KVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQG 89 (117)
T ss_dssp TCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETT
T ss_pred CCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecC
Confidence 34556677665554 22 3349999999999999999999999985
No 125
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=80.66 E-value=1.7 Score=30.13 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=25.9
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
=||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 111 g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 139 (150)
T 2i2y_A 111 GFAFVEFEDPRDAADAVRELDGRTLCGCR 139 (150)
T ss_dssp SEEEEEESSHHHHHHHHHHHSSSCSSSSC
T ss_pred cEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 49999999999999999999999987643
No 126
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=80.57 E-value=1.5 Score=32.18 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=28.5
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
-||.|+|.+.+.|.+..++++|..+.+.. |-+.+
T Consensus 144 g~~fV~f~~~~~a~~Ai~~lng~~~~g~~--i~V~~ 177 (213)
T 4f02_A 144 GYGFVHFETQEAAERAIEKMNGMLLNDRK--VFVGR 177 (213)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTEE--CEEEE
T ss_pred eEEEEEeCCHHHHHHHHHHhCCCEECCEE--EEEEE
Confidence 48999999999999999999999997744 44443
No 127
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=80.46 E-value=1.7 Score=29.39 Aligned_cols=36 Identities=14% Similarity=0.361 Sum_probs=29.5
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccccC
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVP 82 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVP 82 (130)
=||.|+|.+.+.|.+..+.++|..+.+. .+-+++..
T Consensus 45 g~afV~f~~~~~A~~a~~~l~~~~~~g~--~l~v~~~~ 80 (167)
T 1fxl_A 45 GYGFVNYIDPKDAEKAINTLNGLRLQTK--TIKVSYAR 80 (167)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECC
T ss_pred eEEEEEECCHHHHHHHHHHcCCCccCCc--eEEEEecC
Confidence 3899999999999999999999999764 45555543
No 128
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=80.46 E-value=1 Score=30.91 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=26.0
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
-||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 137 g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (172)
T 2g4b_A 137 GYAFCEYVDINVTDQAIAGLNGMQLGDKK 165 (172)
T ss_dssp EEEEEEESSTTHHHHHHHHHTTCEETTEE
T ss_pred eEEEEEeCCHHHHHHHHHHcCCCEECCeE
Confidence 37999999999999999999999987643
No 129
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=80.30 E-value=1.9 Score=28.05 Aligned_cols=34 Identities=12% Similarity=0.236 Sum_probs=27.7
Q ss_pred eEEEEeCCHHHHHHHHHhcC--Cccccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECD--GMEYESSATRVDLRFV 81 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~d--G~E~e~s~~~lDLRFV 81 (130)
||.|+|.+.+.|.+..+.++ |..+.+. .|-+.|-
T Consensus 54 ~afV~f~~~~~A~~A~~~l~~g~~~~~g~--~l~V~~a 89 (109)
T 2dis_A 54 FAFVEYESHRAAAMARRKLMPGRIQLWGH--QIAVDWA 89 (109)
T ss_dssp EEEEEESSHHHHHHHHTTTTTCCSCBTTB--CCEEEES
T ss_pred EEEEEecCHHHHHHHHHHhhCCCceecCC--eEEEEEc
Confidence 89999999999999999996 5888764 4555544
No 130
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=80.05 E-value=1.6 Score=30.27 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=28.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+. .|-++|
T Consensus 114 ~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~ 146 (158)
T 2kn4_A 114 FAFVRFHDKRDAEDAMDAMDGAVLDGR--ELRVQM 146 (158)
T ss_dssp EEEEEESBHHHHHHHHHHSTTEESSSS--EEEEEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCe--EEEEEE
Confidence 899999999999999999999998763 454444
No 131
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=79.90 E-value=1.7 Score=29.49 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=29.1
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccccC
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVP 82 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVP 82 (130)
||.|+|.+.+.|.+..+.++|..+.+. .+-+++-.
T Consensus 47 ~afV~f~~~~~A~~a~~~l~~~~~~g~--~l~v~~~~ 81 (168)
T 1b7f_A 47 YAFVDFTSEMDSQRAIKVLNGITVRNK--RLKVSYAR 81 (168)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECC
T ss_pred EEEEEECCHHHHHHHHHhcCCCEeCCc--EEEEEecC
Confidence 899999999999999999999999764 45555543
No 132
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=79.46 E-value=1.3 Score=30.63 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=28.3
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+.+. .+-++|
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~~g~--~i~v~~ 170 (175)
T 1fje_B 138 IAYIEFKSEADAEKNLEEKQGAEIDGR--SVSLYY 170 (175)
T ss_dssp EEEEECSSHHHHHHHHHHHTEEEETTE--EEEEEE
T ss_pred EEEEEECCHHHHHHHHHHhCCCEECCe--EEEEEe
Confidence 899999999999999999999998863 455554
No 133
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=79.44 E-value=1.3 Score=30.92 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=25.3
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+..+.++|..+.+.
T Consensus 91 ~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 91 FAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp CCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 899999999999999999999998764
No 134
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=78.80 E-value=2 Score=28.93 Aligned_cols=35 Identities=23% Similarity=0.386 Sum_probs=29.4
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccccC
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVP 82 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVP 82 (130)
||.|+|.+.+.|.+..+.++|..+.+. .+-+++..
T Consensus 43 ~afV~f~~~~~a~~A~~~l~~~~~~g~--~i~v~~~~ 77 (166)
T 3md3_A 43 YAFVEYHQSHDANIALQTLNGKQIENN--IVKINWAF 77 (166)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECC
T ss_pred EEEEEeCCHHHHHHHHHHcCCCccCCC--eeEEEEcC
Confidence 899999999999999999999999764 45555543
No 135
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=77.89 E-value=1.5 Score=29.68 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=26.6
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|||.+.+.|.+..+.++|..+...+..|-+.|
T Consensus 53 ~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 53 QALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp EEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred EEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 89999999999999999987765443444454444
No 136
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=77.79 E-value=2 Score=35.64 Aligned_cols=36 Identities=22% Similarity=0.480 Sum_probs=28.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc-cc--ccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS-AT--RVDLRFV 81 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s-~~--~lDLRFV 81 (130)
||.|+|.+.+.|++.+++++|.++... ++ .|=+.|+
T Consensus 58 faFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 58 YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 96 (345)
T ss_dssp EEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEC
T ss_pred EEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEe
Confidence 999999999999999999999999422 23 3444565
No 137
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=77.67 E-value=2 Score=29.56 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=27.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRV 76 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~l 76 (130)
||.||+.+.+.|++.-+.++|+.+.+..-..
T Consensus 45 faFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V 75 (89)
T 2wbr_A 45 IALCKYTTREEANKAQMALNNCVLANTTIFA 75 (89)
T ss_dssp EEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred EEEEEECCHHHHHHHHHHhcCCEECCcEEEE
Confidence 8999999999999999999999999876443
No 138
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.45 E-value=1.8 Score=28.65 Aligned_cols=32 Identities=9% Similarity=0.267 Sum_probs=26.4
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++| .+.+.. |-+++
T Consensus 61 ~afV~f~~~~~a~~Ai~~~~~-~~~g~~--l~V~~ 92 (116)
T 2cqd_A 61 YGFVTMADRAAAERACKDPNP-IIDGRK--ANVNL 92 (116)
T ss_dssp EEEEEESSHHHHHHHHTCSSC-EETTEE--CEEEE
T ss_pred EEEEEECCHHHHHHHHHhCCC-cCCCEE--EEEEE
Confidence 899999999999999999999 676644 44444
No 139
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=77.38 E-value=2.4 Score=31.06 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=30.6
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCC
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDD 84 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd 84 (130)
||.|+|.+.+.|.+..+.++|..+.+ ..|-+.|....
T Consensus 131 ~afV~F~~~~~A~~Ai~~lng~~l~G--r~l~V~~a~~~ 167 (177)
T 2f3j_A 131 TADVHFERRADALKAMKQYKGVPLDG--RPMDIQLVASQ 167 (177)
T ss_dssp CEEEEESCHHHHHHHHHHSTTCBCSS--SBCEEEEESSG
T ss_pred EEEEEeCCHHHHHHHHHHhCCCEECC--EEEEEEEecCC
Confidence 79999999999999999999999877 45666665443
No 140
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=77.07 E-value=1.2 Score=29.52 Aligned_cols=26 Identities=19% Similarity=0.079 Sum_probs=24.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+.. +++|..+.+.
T Consensus 69 ~afV~f~~~~~a~~A~-~l~g~~~~g~ 94 (114)
T 2cq4_A 69 IAYVEFCEIQSVPLAI-GLTGQRLLGV 94 (114)
T ss_dssp CEEEEESCGGGHHHHH-HHTTEEETTE
T ss_pred EEEEEeCcHHHHHHHH-HcCCCEeCCe
Confidence 8999999999999999 9999998764
No 141
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=76.79 E-value=2 Score=29.85 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=32.2
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccccCCC
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDD 84 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPDd 84 (130)
=||-|+|.+.+.|.+..++++|..|.+ ..+-..|.|.+
T Consensus 56 G~~fV~f~~~e~A~~Ai~~lnG~~f~G--R~i~v~~~~~~ 93 (114)
T 3s6e_A 56 GNVYVKCPSIAAAIAAVNALHGRWFAG--KMITAAYVPLP 93 (114)
T ss_dssp CCEEEECSSHHHHHHHHHHHTTCEETT--EECEEEEECHH
T ss_pred EEEEEEECCHHHHHHHHHHhCCCEECC--EEEEEEEEcHH
Confidence 379999999999999999999999976 55667777644
No 142
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=78.48 E-value=0.5 Score=31.53 Aligned_cols=34 Identities=29% Similarity=0.401 Sum_probs=28.0
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
=||.|+|.+.+.|.+..+.++|..+.+. .|-+++
T Consensus 58 g~afV~f~~~~~A~~Ai~~l~g~~~~g~--~l~V~~ 91 (116)
T 2lcw_A 58 GEATVSFDDPPSAKAAIDWFDGKEFSGN--PIKVSF 91 (116)
Confidence 3899999999999999999999998764 344443
No 143
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=76.54 E-value=2.5 Score=29.45 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=30.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCC
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPD 83 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPD 83 (130)
||-|+|.+.+.|.+..++++|..|.+ ..+-..|.|.
T Consensus 73 ~~FV~F~~~e~A~~Ai~~LnGr~f~G--R~i~v~~~~~ 108 (118)
T 3ue2_A 73 KIFVEFSIASETHKAIQALNGRWFAG--RKVVAEVYDQ 108 (118)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETT--EECEEEEECH
T ss_pred EEEEEECCHHHHHHHHHHHCCCEECC--cEEEEEEcCh
Confidence 79999999999999999999999876 5566666654
No 144
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=75.62 E-value=1.3 Score=31.01 Aligned_cols=34 Identities=12% Similarity=0.231 Sum_probs=28.1
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
-||.|+|.+.+.|.+..+.++|..+.+. .+-++|
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~ 190 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQLGDK--KLLVQR 190 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEECCE--EEEEEE
Confidence 4899999999999999999999998764 344443
No 145
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=75.54 E-value=2.5 Score=29.98 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=28.1
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
=||.|+|.+.+.|.+..+.++|..+. .+..+-++|
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~-~g~~l~v~~ 193 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLG-ENHHLRVSF 193 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCS-SCCSCCEEE
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccC-CCCeEEEEe
Confidence 48999999999999999999999986 133444444
No 146
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=74.62 E-value=1.9 Score=32.92 Aligned_cols=31 Identities=23% Similarity=0.203 Sum_probs=27.3
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRV 76 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~l 76 (130)
||.|+|.+.+.|.+..+.++|.+|.+....+
T Consensus 114 faFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V 144 (229)
T 3q2s_C 114 FALVGVGSEASSKKLMDLLPKRELHGQNPVV 144 (229)
T ss_dssp EEEEEESCTTHHHHHHTTSTTSCBTTBCCEE
T ss_pred EEEEEECCHHHHHHHHHHcCCCeECCEEeEE
Confidence 8999999999999999999999998755333
No 147
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=74.25 E-value=2.9 Score=29.66 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=25.5
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
=||.|+|.+.+.|.+..+.++|..+.+..
T Consensus 71 g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 99 (216)
T 2qfj_A 71 GFAFVEYEVPEAAQLALEQMNSVMLGGRN 99 (216)
T ss_dssp SEEEEEESSHHHHHHHHHHHSSCCCC-CC
T ss_pred ceEEEEeCCHHHHHHHHHHccCCeeCCee
Confidence 38999999999999999999999987654
No 148
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=74.07 E-value=2.5 Score=28.55 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=24.4
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+ ++|..+.+..
T Consensus 63 ~afV~F~~~~~a~~Al~-~~g~~~~gr~ 89 (118)
T 2db1_A 63 EAFVELESEDDVKLALK-KDRESMGHRY 89 (118)
T ss_dssp EEEEEBSSHHHHHHHGG-GTTEEETTEE
T ss_pred EEEEEECCHHHHHHHHh-cCCCeECCeE
Confidence 89999999999999999 9999887643
No 149
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=73.91 E-value=2.6 Score=31.37 Aligned_cols=29 Identities=10% Similarity=-0.016 Sum_probs=26.7
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
=||.|+|.+.+.|.+.-+.++|.++.+..
T Consensus 43 g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 71 (205)
T 3tyt_A 43 GAAMVEMADGYAVDRAITHLNNNFMFGQK 71 (205)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCce
Confidence 37999999999999999999999998854
No 150
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.87 E-value=3.2 Score=27.74 Aligned_cols=27 Identities=41% Similarity=0.549 Sum_probs=24.1
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+ ++|..+.+..
T Consensus 54 ~aFV~F~~~e~a~~Ai~-~~~~~~~gr~ 80 (103)
T 1s79_A 54 SIFVVFDSIESAKKFVE-TPGQKYKETD 80 (103)
T ss_dssp EEEEEESSHHHHHHHHT-SSCCCCTTTT
T ss_pred EEEEEECCHHHHHHHHH-cCCCEECCEE
Confidence 89999999999999998 8999887743
No 151
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.79 E-value=2.2 Score=27.60 Aligned_cols=26 Identities=12% Similarity=0.272 Sum_probs=24.1
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+..+. +|..+.+.
T Consensus 60 ~afV~f~~~~~a~~a~~~-~~~~~~g~ 85 (105)
T 2dh8_A 60 FGFVKFKDPNCVGTVLAS-RPHTLDGR 85 (105)
T ss_dssp EEEEEESSTTHHHHHHHH-CSEEETTE
T ss_pred EEEEEECCHHHHHHHHHh-CCCeECCE
Confidence 899999999999999999 99988874
No 152
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=73.78 E-value=2.2 Score=28.74 Aligned_cols=26 Identities=8% Similarity=-0.018 Sum_probs=23.9
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+.-+ ++|..+.+-
T Consensus 69 ~afV~F~~~~~a~~Al~-~~g~~~~gr 94 (124)
T 1wel_A 69 EGFVEFRNEADYKAALC-RHKQYMGNR 94 (124)
T ss_dssp EEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred EEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 89999999999999999 999988764
No 153
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=73.41 E-value=3.1 Score=30.72 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=27.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..+.++|..+. .+..+-++|
T Consensus 191 ~afV~f~~~~~A~~Ai~~l~g~~~~-~g~~l~v~~ 224 (229)
T 2adc_A 191 MALIQMGSVEEAVQALIDLHNHDLG-ENHHLRVSF 224 (229)
T ss_dssp CEEEEESSHHHHHHHHHHHTTCBSS-SSCBCEEEE
T ss_pred EEEEEECCHHHHHHHHHHHCCCccC-CCCeEEEEE
Confidence 8999999999999999999999986 123454444
No 154
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=72.85 E-value=2.9 Score=31.35 Aligned_cols=35 Identities=17% Similarity=0.362 Sum_probs=29.4
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
=||.|+|.+.+.|.+..+.++|..+.+. .|-+.|.
T Consensus 53 g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~a 87 (282)
T 3pgw_A 53 GQAFVIFKEVSSATNALRSMQGFPFYDK--PMRIQYA 87 (282)
T ss_pred eEEEEEECCHHHHHHHHHHhcCCeeCCc--EEEEEEe
Confidence 4899999999999999999999999874 4545544
No 155
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.80 E-value=4.2 Score=25.70 Aligned_cols=34 Identities=18% Similarity=0.482 Sum_probs=28.3
Q ss_pred EEEEeCCHHHHHHHHHhcCCcccccccccccccccC
Q psy7101 47 AVVVFDSAESANKVYTECDGMEYESSATRVDLRFVP 82 (130)
Q Consensus 47 AVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVP 82 (130)
|.|+|.+.+.|.+.-+.++|..+.+ ..|-+.|..
T Consensus 57 afV~f~~~~~a~~Ai~~l~g~~~~g--~~l~V~~a~ 90 (96)
T 2e44_A 57 VNVTYSSKDQARQALDKLNGFQLEN--FTLKVAYIP 90 (96)
T ss_dssp EEEEESSHHHHHHHHHHHTTCBCSS--CBCEEEECC
T ss_pred EEEEECCHHHHHHHHHHhCCCEECC--cEEEEEEcC
Confidence 9999999999999999999999976 445555543
No 156
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=72.78 E-value=1.6 Score=29.06 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=22.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcc
Q psy7101 46 YAVVVFDSAESANKVYTECDGME 68 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E 68 (130)
||-|+|.+.+.|.+..+.++|.+
T Consensus 55 ~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 55 FAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp EEEEECSSSHHHHHHHHHHHSSS
T ss_pred EeEEEECCHHHHHHHHHHhcCCC
Confidence 89999999999999999999986
No 157
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=72.77 E-value=3 Score=28.47 Aligned_cols=33 Identities=18% Similarity=0.465 Sum_probs=27.0
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
=||.|+|.+.+.|.+.. +++|..+.+.. +-+++
T Consensus 52 g~afV~f~~~~~A~~A~-~~~~~~~~g~~--i~v~~ 84 (172)
T 2g4b_A 52 NFAFLEFRSVDETTQAM-AFDGIIFQGQS--LKIRR 84 (172)
T ss_dssp TEEEEEESSHHHHHHHG-GGTTCEETTEE--CEEEC
T ss_pred CEEEEEeCCHHHHHHHH-HhCCcEecCce--eeecC
Confidence 48999999999999999 99999987643 44443
No 158
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=72.10 E-value=2.5 Score=35.52 Aligned_cols=33 Identities=21% Similarity=0.505 Sum_probs=28.6
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDL 78 (130)
||.|+|.+.+.|.+..+.|+|..|.+....+.+
T Consensus 146 ~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 146 YAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred eEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 899999999999999999999999876544444
No 159
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=71.68 E-value=3.4 Score=31.03 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=24.8
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYE 70 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e 70 (130)
=||.|+|.+.+.|.+..+.++|..+.
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~ 270 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKIT 270 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeC
Confidence 49999999999999999999999988
No 160
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=71.23 E-value=4.1 Score=30.07 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=28.5
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
||.|+|.+.+.|.+..+.++|..+.+. .+-+.+-
T Consensus 74 ~afV~F~~~~~A~~Ai~~l~g~~~~g~--~l~v~~a 107 (229)
T 2adc_A 74 NALVQMADGNQAQLAMSHLNGHKLHGK--PIRITLS 107 (229)
T ss_dssp CEEEEESCHHHHHHHHHHHTTCBCSSS--BCEEECC
T ss_pred EEEEEECCHHHHHHHHHHhCCCeECCe--EEEEEEe
Confidence 799999999999999999999999774 4444443
No 161
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=71.09 E-value=2 Score=29.60 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=23.1
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYE 70 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e 70 (130)
||.|||.+.+.|.+..+.++|.++.
T Consensus 59 ~AFVef~~~~~A~~Av~~ln~~~~~ 83 (100)
T 3r27_A 59 QALVEFEDVLGACNAVNYAADNQIY 83 (100)
T ss_dssp EEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred EEEEEECCHHHHHHHHHHhcCCCce
Confidence 8999999999999999999988754
No 162
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=70.62 E-value=4.1 Score=26.78 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=23.2
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+.-+ ++|..+.+-
T Consensus 57 ~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (107)
T 2lmi_A 57 DALIEMESEQDVQKALE-KHRMYMGQR 82 (107)
T ss_dssp EEEEEBSSHHHHHHHHT-TTTCCSSSS
T ss_pred EEEEEECCHHHHHHHHH-hCcceeCCe
Confidence 89999999999999999 999887653
No 163
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=70.32 E-value=4.3 Score=26.54 Aligned_cols=27 Identities=26% Similarity=0.171 Sum_probs=24.1
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+. +|..+.+-.
T Consensus 59 ~afV~F~~~~~a~~A~~~-~~~~~~gr~ 85 (104)
T 1wg5_A 59 EAFVQFASQEIAEKALKK-HKERIGHRY 85 (104)
T ss_dssp EEEEEESSHHHHHHHHTT-TTCCSSSSC
T ss_pred EEEEEECCHHHHHHHHHh-CcchhCCcE
Confidence 899999999999999998 998887653
No 164
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=69.20 E-value=3.3 Score=24.91 Aligned_cols=27 Identities=15% Similarity=0.279 Sum_probs=23.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+. +|..+.+..
T Consensus 43 ~afV~f~~~~~a~~Ai~~-~~~~~~g~~ 69 (75)
T 1iqt_A 43 FCFITFKEEEPVKKIMEK-KYHNVGLSK 69 (75)
T ss_dssp CEEEECSSSHHHHHHHTT-SSCCBTTBC
T ss_pred EEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 899999999999999986 887776643
No 165
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=69.20 E-value=3.7 Score=30.85 Aligned_cols=35 Identities=26% Similarity=0.502 Sum_probs=29.3
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
-||.|+|.+.+.|.+..+.++|..+.+. .|-++|.
T Consensus 227 g~afV~f~~~~~A~~A~~~l~g~~~~g~--~l~v~~a 261 (284)
T 3smz_A 227 GFAVLEYETAEMAEEAQQQADGLSLGGS--HLRVSFC 261 (284)
T ss_dssp EEEEEECSSHHHHHHHHHHHTTCEETTE--ECEEEEC
T ss_pred cEEEEEeCCHHHHHHHHHHhCCCccCCe--EEEEEEe
Confidence 5899999999999999999999999664 4555553
No 166
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=68.70 E-value=4.8 Score=27.34 Aligned_cols=26 Identities=15% Similarity=0.096 Sum_probs=23.9
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYE 70 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e 70 (130)
=||.|+|.+.+.|.+..+.++|..+.
T Consensus 48 g~afV~f~~~~~A~~A~~~l~~~~~~ 73 (175)
T 3nmr_A 48 GCCFVTFYTRKAALEAQNALHNMKVL 73 (175)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTTCCC
T ss_pred eEEEEEECCHHHHHHHHHHhcCcEEc
Confidence 38999999999999999999998875
No 167
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.77 E-value=2.7 Score=28.28 Aligned_cols=28 Identities=11% Similarity=0.045 Sum_probs=22.5
Q ss_pred eeEEEEeCCHHHHHHHHHhcC--Ccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECD--GMEYESS 72 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~d--G~E~e~s 72 (130)
=||.|||.+.+.|.+..+.++ |.++.+-
T Consensus 52 g~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr 81 (101)
T 2cq1_A 52 NQAFLELATEEAAITMVNYYSAVTPHLRNQ 81 (101)
T ss_dssp TEEEEEESSHHHHHHHHHHHHHSCCEETTE
T ss_pred CEEEEEECCHHHHHHHHHHhccCCceECCc
Confidence 489999999999999999774 5556543
No 168
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=67.76 E-value=4.1 Score=26.21 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=23.2
Q ss_pred eeEEEEeCCHHHHHHHHHhc-CCcccccc
Q psy7101 45 YYAVVVFDSAESANKVYTEC-DGMEYESS 72 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~-dG~E~e~s 72 (130)
=||.|+|.+.+.|.+..+.+ +|+.+.+.
T Consensus 45 g~aFV~F~~~~~A~~Ai~~~~~~~~~~gr 73 (91)
T 2lxi_A 45 GFAFVEFSHLQDATRWMEANQHSLNILGQ 73 (91)
T ss_dssp SEEEEECSSHHHHHHHHHTTTTEEEETTE
T ss_pred ceEEEEecCHHHHHHHHHhcCCCeEECCE
Confidence 38999999999999999887 46677664
No 169
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=67.40 E-value=3.7 Score=27.27 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=23.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+. +|..+.+..
T Consensus 59 ~afV~F~~~~~a~~Al~~-~~~~~~gr~ 85 (114)
T 2cpy_A 59 QALVQFKNEDDARKSERL-HRKKLNGRE 85 (114)
T ss_dssp CEEEECSSHHHHHHHGGG-CSEEETTEE
T ss_pred EEEEEECCHHHHHHHHHh-CCCccCCeE
Confidence 899999999999999887 998887643
No 170
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=67.13 E-value=2.4 Score=29.70 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=19.9
Q ss_pred hhHHhhhchhhhhhhHHHHhhhc
Q psy7101 107 QADLMVHLPQIRDDHMKYISELA 129 (130)
Q Consensus 107 ~~~i~~~L~~iRe~h~~~iselA 129 (130)
+..-+++|||.|.+++.++|++.
T Consensus 21 ~serte~lqqlr~~y~s~~se~~ 43 (97)
T 1no4_A 21 QSERTEALQQLRVNYGSFVSEYN 43 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Confidence 55668999999999999999863
No 171
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=66.91 E-value=4.3 Score=27.94 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=26.6
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+.. +++|..+.+.. +-+++
T Consensus 56 ~afV~f~~~~~a~~A~-~l~g~~~~g~~--l~v~~ 87 (175)
T 1fje_B 56 FGYVDFESAEDLEKAL-ELTGLKVFGNE--IKLEK 87 (175)
T ss_dssp EEEEEESSHHHHHHHH-HGGGEEETTEE--EEEEC
T ss_pred EEEEEECCHHHHHHHH-hcCCCEeCCeE--EEEec
Confidence 8999999999999999 69999998643 44444
No 172
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=66.71 E-value=3.5 Score=24.85 Aligned_cols=26 Identities=23% Similarity=0.413 Sum_probs=22.9
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.|.+.|.+..+.++ ..+.+.
T Consensus 44 ~afV~f~~~~~a~~a~~~~~-~~~~g~ 69 (77)
T 1uaw_A 44 FGFVTFMDQAGVDKVLAQSR-HELDSK 69 (77)
T ss_dssp EEEECCCCTTHHHHHHHTTT-CCCSSC
T ss_pred eEEEEEcCHHHHHHHHHhCC-CccCCE
Confidence 89999999999999999888 666654
No 173
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.56 E-value=5.3 Score=27.13 Aligned_cols=26 Identities=15% Similarity=0.103 Sum_probs=23.3
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+.. +++|.++.+-
T Consensus 58 ~afV~F~~~~~a~~Al-~~~~~~~~gr 83 (109)
T 2dnn_A 58 NGLVKFLSPQDTFEAL-KRNRMLMIQR 83 (109)
T ss_dssp EEEEECSSHHHHHHHH-HTTTEEETTE
T ss_pred EEEEEECCHHHHHHHH-hcCCCeECCe
Confidence 8999999999999988 7999988764
No 174
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=66.20 E-value=4.6 Score=26.56 Aligned_cols=27 Identities=11% Similarity=0.249 Sum_probs=24.1
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+.-+. +|..+.+..
T Consensus 71 ~afV~f~~~~~a~~Ai~~-~~~~~~g~~ 97 (116)
T 1x4b_A 71 FGFVTFSSMAEVDAAMAA-RPHSIDGRV 97 (116)
T ss_dssp EEEEECSSHHHHHHHHTS-CSEEETTEE
T ss_pred eEEEEeCCHHHHHHHHHh-CCcEECCEE
Confidence 899999999999999998 998887643
No 175
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=66.01 E-value=3.6 Score=29.13 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=28.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
||.|+|.+.+.|.+..+.++|..+.+ ..+-+.+-
T Consensus 43 ~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~a 76 (198)
T 1qm9_A 43 NALVQMADGNQAQLAMSHLNGHKLHG--KPIRITLS 76 (198)
T ss_dssp CCEEECTTTHHHHHHHHHHTTCCCSS--CCCEEEEC
T ss_pred EEEEEECCHHHHHHHHHHhCCCeecC--eEEEEEEe
Confidence 79999999999999999999999976 44555554
No 176
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=65.97 E-value=3.7 Score=28.68 Aligned_cols=27 Identities=19% Similarity=0.503 Sum_probs=24.5
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+.. +++|..+.+..
T Consensus 53 ~afV~F~~~~~A~~Al-~l~g~~~~g~~ 79 (198)
T 2yh0_A 53 FAFLEFRSVDETTQAM-AFDGIIFQGQS 79 (198)
T ss_dssp EEEEEESCSHHHHHHG-GGTTEEETTEE
T ss_pred EEEEEeCCHHHHHHHH-HhcCCEEcCce
Confidence 8999999999999999 89999987754
No 177
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=65.36 E-value=5.2 Score=27.10 Aligned_cols=27 Identities=19% Similarity=0.496 Sum_probs=23.6
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+.-+ ++|..+.+..
T Consensus 131 ~afV~f~~~~~a~~A~~-~~~~~~~g~~ 157 (167)
T 2cjk_A 131 FGFVTYDSADAVDRVCQ-NKFIDFKDRK 157 (167)
T ss_dssp EEEEEESSHHHHHHHHH-CSEECSSSSC
T ss_pred EEEEEECCHHHHHHHHh-CCCEEeCCeE
Confidence 89999999999999987 8888887643
No 178
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=63.84 E-value=4.6 Score=28.64 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=23.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+..+ ++|..+.+.
T Consensus 90 ~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 90 EAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp EEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred EEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 89999999999999999 999988764
No 179
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=63.66 E-value=4.7 Score=26.59 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=22.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+.. +++|..+.+-
T Consensus 57 ~afV~F~~~~~a~~Al-~~~~~~~~gr 82 (102)
T 1wez_A 57 EADVEFATHEDAVAAM-AKDKANMQHR 82 (102)
T ss_dssp EEEEECSSSHHHHHHH-TTSSCCSSSS
T ss_pred EEEEEECCHHHHHHHH-HhCCCeECCc
Confidence 8999999999999988 5799888764
No 180
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=63.29 E-value=5.6 Score=26.39 Aligned_cols=27 Identities=30% Similarity=0.564 Sum_probs=22.8
Q ss_pred eeEEEEeCCHHHHHHHHHhc---CCccccc
Q psy7101 45 YYAVVVFDSAESANKVYTEC---DGMEYES 71 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~---dG~E~e~ 71 (130)
=||.|+|.+.+.|.+.-+.+ +|..+..
T Consensus 53 G~aFV~f~~~~~a~~Ai~~~~~~~G~~~~~ 82 (114)
T 2dnl_A 53 GYAFLLFQEESSVQALIDACLEEDGKLYLC 82 (114)
T ss_dssp SEEEECCSSHHHHHHHHHHSEEETTEEEEE
T ss_pred cEEEEEECCHHHHHHHHHhhhhcCCcEEEe
Confidence 37999999999999999988 7776643
No 181
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=63.04 E-value=5.3 Score=25.62 Aligned_cols=31 Identities=19% Similarity=0.254 Sum_probs=22.9
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLR 79 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLR 79 (130)
=||.|+|.+.+.|. .++|..+...+..+.++
T Consensus 49 GfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~ 79 (89)
T 3d2w_A 49 AFAFVTFADDKVAQ----SLCGEDLIIKGISVHIS 79 (89)
T ss_dssp SEEEEEESCHHHHH----HHTTCEEEETTEEEEEE
T ss_pred CEEEEEECCHHHHH----HHcCCCcccCCEEEEEE
Confidence 38999999999998 46787666555555444
No 182
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=62.99 E-value=4.4 Score=28.18 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=21.6
Q ss_pred eEEEEeCCHHHHHHHHHhcCCc--cccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGM--EYES 71 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~--E~e~ 71 (130)
||.|||.+.+.|.+..+.++|. ++.+
T Consensus 64 ~aFVef~~~~~A~~Ai~~l~~~~~~l~G 91 (112)
T 1x4f_A 64 QAFIEMETREDAMAMVDHCLKKALWFQG 91 (112)
T ss_dssp EEEEECSSHHHHHHHHHHHHHSCCCSSS
T ss_pred EEEEEECCHHHHHHHHHHhccCCceECC
Confidence 7999999999999999988654 4444
No 183
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=62.87 E-value=15 Score=24.84 Aligned_cols=32 Identities=9% Similarity=0.371 Sum_probs=26.4
Q ss_pred eEEEEeCCHHHHHHHHHhcCCc----ccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGM----EYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~----E~e~s~~~lDLRF 80 (130)
||.|+|.+. .|.+..+.++|. ++.+-. |-++|
T Consensus 69 ~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~--l~V~~ 104 (131)
T 2m2b_A 69 FAFIQLSTI-EAAQLLQILQALHPPLTIDGKT--INVEF 104 (131)
T ss_dssp CEEEECCHH-HHHHHHHHHTTCCCSCCGGGCC--CCCEE
T ss_pred EEEEEECCH-HHHHHHHHhcCCCCCccCCCEE--EEEEE
Confidence 899999999 999999999999 776644 44444
No 184
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=62.65 E-value=6.8 Score=29.36 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=28.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccccC
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVP 82 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVP 82 (130)
||.|+|.+.+.|.+..+.++|..+.+. .+-+.+-|
T Consensus 59 ~afV~f~~~~~A~~A~~~l~~~~~~g~--~i~v~~~~ 93 (284)
T 3smz_A 59 TAFVTLLNGEQAEAAINAFHQSRLRER--ELSVQLQP 93 (284)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTE--ECEEEECC
T ss_pred EEEEEeCCHHHHHHHHHHcCCCeeCCe--EEEEEecC
Confidence 899999999999999999999998764 34444433
No 185
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=61.63 E-value=4.4 Score=28.46 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=22.7
Q ss_pred eEEEEeCCHHHHHHHHHhcCC--cccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDG--MEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG--~E~e~s 72 (130)
||.|||.+.+.|.+..+.++| .++.+.
T Consensus 69 ~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr 97 (119)
T 2ad9_A 69 QAFIEMNTEEAANTMVNYYTSVTPVLRGQ 97 (119)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHCCCBTTB
T ss_pred EEEEEECCHHHHHHHHHHhccCCceECCe
Confidence 899999999999999998885 455543
No 186
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=60.58 E-value=7.5 Score=24.01 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=20.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYES 71 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~ 71 (130)
||.|+|.+.+.|.+..+. +|..+.+
T Consensus 55 ~afV~f~~~~~a~~A~~~-~~~~~~g 79 (87)
T 3s7r_A 55 FGFILFKDAASVEKVLDQ-KEHRLDG 79 (87)
T ss_dssp EEEEEESSTHHHHHHHHS-SCEEETT
T ss_pred EEEEEECCHHHHHHHHHh-CCCEECC
Confidence 899999999999999854 7766554
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=60.32 E-value=7.3 Score=29.31 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=28.4
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
=||.|+|.+.+.|.+..+.++|..+.+. .+-+++
T Consensus 160 g~afV~f~~~~~a~~A~~~l~g~~~~g~--~l~v~~ 193 (292)
T 2ghp_A 160 RFAYIDVTSKEDARYCVEKLNGLKIEGY--TLVTKV 193 (292)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTCEETTE--ECEEEE
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEeCCc--EEEEEE
Confidence 3799999999999999999999999773 344444
No 188
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=60.18 E-value=6.8 Score=29.51 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=28.6
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFV 81 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFV 81 (130)
=||.|+|.+.+.|.+....++|..+.+. .+-+++.
T Consensus 59 g~afV~f~~~~~A~~A~~~l~g~~i~g~--~l~v~~a 93 (261)
T 3sde_A 59 GFGFIRLESRTLAEIAKAELDGTILKSR--PLRIRFA 93 (261)
T ss_dssp TEEEEECSSHHHHHHHHHHHTTCEETTE--ECEEEEC
T ss_pred cEEEEEECCHHHHHHHHHHcCCcEECCc--eeEeeec
Confidence 3899999999999999999999998764 3444443
No 189
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=59.37 E-value=7 Score=29.39 Aligned_cols=27 Identities=19% Similarity=0.315 Sum_probs=24.5
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
-||.|+|.+.+.|.+.. +++|..+.+.
T Consensus 255 g~afV~F~~~~~A~~A~-~l~g~~~~g~ 281 (292)
T 2ghp_A 255 CCAFMVFENKDSAERAL-QMNRSLLGNR 281 (292)
T ss_dssp EEEEEEESSHHHHHHHG-GGTTEEETTE
T ss_pred eEEEEEeCCHHHHHHHH-HhcCCEECCc
Confidence 47999999999999999 9999998763
No 190
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=57.57 E-value=4.6 Score=27.37 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=21.3
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGME 68 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E 68 (130)
=||-|||.+.+.|...-+.++|..
T Consensus 53 g~aFVef~~~~~A~~Ai~~l~~~~ 76 (102)
T 1x4d_A 53 NEAFIEMATTEDAQAAVDYYTTTP 76 (102)
T ss_dssp SCEEEEESSHHHHHHHHHHHHHSC
T ss_pred CEEEEEECCHHHHHHHHHHHcCCC
Confidence 379999999999999999988755
No 191
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=56.27 E-value=10 Score=26.33 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=25.6
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+.... +|..+.+. .+-+++
T Consensus 148 ~afV~F~~~~~A~~A~~~-~~~~~~G~--~i~v~~ 179 (196)
T 1l3k_A 148 FAFVTFDDHDSVDKIVIQ-KYHTVNGH--NCEVRK 179 (196)
T ss_dssp EEEEEESSHHHHHHHHHC-SCCEETTE--ECEEEE
T ss_pred eEEEEECCHHHHHHHHHh-CCcEECCE--EEEEEe
Confidence 799999999999999987 68877764 355544
No 192
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=54.69 E-value=14 Score=25.43 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=22.9
Q ss_pred eEEEEeCCHHHHHHHHHhcCC--cccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDG--MEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG--~E~e~s 72 (130)
||-|||.+.+.|.+.-+.++| .++.+.
T Consensus 54 faFVeF~~~~~A~~Ai~~l~~~~~~l~Gr 82 (105)
T 1sjq_A 54 QAFIEMNTEEAANTMVNYYTSVTPVLRGQ 82 (105)
T ss_dssp EEEEEESSHHHHHHHHHHHTTSCCEETTE
T ss_pred EEEEEECCHHHHHHHHHHhccCCceECCE
Confidence 899999999999999998864 666654
No 193
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.75 E-value=12 Score=23.87 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=23.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
||.|+|.+.+.|.+..++ |..+.+ ..+.+++
T Consensus 59 ~afV~f~~~~~a~~A~~~--~~~~~g--~~l~v~~ 89 (103)
T 2cqg_A 59 FGFVRFTEYETQVKVMSQ--RHMIDG--RWCDCKL 89 (103)
T ss_dssp EEEEEESSHHHHHHHHHS--CEEETT--EEEEEEC
T ss_pred eEEEEECCHHHHHHHHHc--CCeeCC--eEEEEEe
Confidence 899999999999999984 554444 3444444
No 194
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=53.37 E-value=7.1 Score=24.34 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=23.4
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccccccccccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRF 80 (130)
=||.|+|.+.+.|++ ++|..+......+.+.+
T Consensus 43 g~afV~f~~~~~a~~----~~~~~~~~~g~~l~v~~ 74 (88)
T 1wf0_A 43 AFAFVTFADDQIAQS----LCGEDLIIKGISVHISN 74 (88)
T ss_dssp SCCEEECSCHHHHHH----TTTCEEEETTEEEEEEC
T ss_pred CEEEEEECCHHHHHH----HhcCCceeCCEEEEEEe
Confidence 389999999999974 67776665555555554
No 195
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=52.83 E-value=13 Score=27.01 Aligned_cols=28 Identities=18% Similarity=0.212 Sum_probs=25.5
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+.++|..+.+-.
T Consensus 59 ~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 59 YAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred cccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 8999999999999999999999887643
No 196
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=50.38 E-value=16 Score=26.71 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=30.3
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccccccccccccCC
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPD 83 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~~~lDLRFVPD 83 (130)
++-|+|.+.+.|.+--+.++|..|.+ ..+-..|.|.
T Consensus 177 ~~fv~f~~~~~a~~a~~~l~gr~~~g--r~i~~~~~~~ 212 (222)
T 3dxb_A 177 KIFVEFSIASETHKAIQALNGRWFAG--RKVVAEVYDQ 212 (222)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCBSSS--SBCEEEECCH
T ss_pred EEEEEECCHHHHHHHHHHhcCceECC--eEEEEEEcCH
Confidence 78999999999999999999999877 4465666654
No 197
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=49.07 E-value=17 Score=28.54 Aligned_cols=25 Identities=12% Similarity=0.049 Sum_probs=23.8
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEY 69 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~ 69 (130)
=||-|+|.+.+.|....+.++|..+
T Consensus 180 G~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 180 NCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp TEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3899999999999999999999999
No 198
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.40 E-value=13 Score=25.83 Aligned_cols=25 Identities=20% Similarity=0.151 Sum_probs=22.3
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYES 71 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~ 71 (130)
||.|+|.+.+.|.+..+. +|..+.+
T Consensus 70 ~aFV~F~~~~~A~~Al~~-~~~~l~g 94 (123)
T 2dha_A 70 DAFVLFACEEYAQNALRK-HKDLLGK 94 (123)
T ss_dssp EEEECCSSHHHHHHHHTT-TTEESSS
T ss_pred EEEEEECCHHHHHHHHHh-CCCeeCC
Confidence 899999999999999987 8887765
No 199
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=46.37 E-value=7.7 Score=27.60 Aligned_cols=26 Identities=23% Similarity=0.151 Sum_probs=23.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+.. +++|..+.+-
T Consensus 88 faFV~F~~~e~A~~Al-~~~g~~l~gR 113 (139)
T 2hgn_A 88 EADVEFATHEEAVAAM-SKDRANMQHR 113 (139)
T ss_dssp CCEEECSHHHHHHHHT-TCCSCSSSSC
T ss_pred EEEEEeCCHHHHHHHH-hhCCCEECCE
Confidence 8999999999999988 8899887764
No 200
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=45.72 E-value=4.5 Score=25.95 Aligned_cols=25 Identities=16% Similarity=0.333 Sum_probs=20.7
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYES 71 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e~ 71 (130)
=||.|+|.+.+.|.+..+ +|.++.+
T Consensus 51 g~afV~f~~~~~a~~Ai~--~~~~~~g 75 (102)
T 2xs2_A 51 GYGFVSFYNDVDVQKIVE--SQINFHG 75 (102)
T ss_dssp EEEEEEESSCCCHHHHTT--CCCEETT
T ss_pred ceEEEEECCHHHHHHHHh--CCCeECC
Confidence 489999999999999998 6655554
No 201
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=45.55 E-value=20 Score=24.72 Aligned_cols=27 Identities=7% Similarity=0.267 Sum_probs=23.0
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESSA 73 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s~ 73 (130)
||.|+|.+.+.|.+..+. +|..+.+..
T Consensus 57 ~afV~f~~~~~A~~A~~~-~~~~~~g~~ 83 (196)
T 1l3k_A 57 FGFVTYATVEEVDAAMNA-RPHKVDGRV 83 (196)
T ss_dssp EEEEEESSHHHHHHHHHT-CSCEETTEE
T ss_pred eEEEEeCCHHHHHHHHhc-CCCEECCEE
Confidence 899999999999999976 887776643
No 202
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=45.15 E-value=17 Score=23.83 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=21.8
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+.-+.+ |..+.+.
T Consensus 69 ~afV~f~~~~~A~~Ai~~~-~~~l~g~ 94 (109)
T 2rs2_A 69 FGFVTFMDQAGVDKVLAQS-RHELDSK 94 (109)
T ss_dssp CEEEEESSHHHHHHHHHSS-CEEETTE
T ss_pred EEEEEECCHHHHHHHHHHC-CCcCCCE
Confidence 8999999999999999876 5666553
No 203
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.11 E-value=20 Score=23.98 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=27.5
Q ss_pred chhcHHHHHHHHHh-----hhce-----eeEEEEeCCHHHHHHHHHhcCC
Q psy7101 27 NAYHREKLRQYQLN-----RLKY-----YYAVVVFDSAESANKVYTECDG 66 (130)
Q Consensus 27 ~~~~~e~lR~Yq~~-----rlrY-----yyAVvecds~~tA~~iY~e~dG 66 (130)
...+.+.||++=.+ ..+. =||.|||.+.+.|....+.+.|
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 44566667765322 1111 2899999999999999998555
No 204
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=40.62 E-value=6.3 Score=27.17 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=26.3
Q ss_pred eEEEEeCCHHHHHHHHHhc-CCccccccccccc
Q psy7101 46 YAVVVFDSAESANKVYTEC-DGMEYESSATRVD 77 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~-dG~E~e~s~~~lD 77 (130)
+++||+.+.+.|.+..+++ +|.++.+ ...++
T Consensus 15 ~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~ 46 (150)
T 2i2y_A 15 ETTTEAVDAATAEKVFKQYANDNGVDG-EWTYD 46 (150)
T ss_dssp EEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEE
T ss_pred cceeeecCHHHHHHHHHHHhcCCCCCC-ceecc
Confidence 6799999999999999999 9999988 43333
No 205
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=38.83 E-value=6.5 Score=29.43 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=0.0
Q ss_pred HHHHHHhhhceeeEEEEeCCHHHHH
Q psy7101 34 LRQYQLNRLKYYYAVVVFDSAESAN 58 (130)
Q Consensus 34 lR~Yq~~rlrYyyAVvecds~~tA~ 58 (130)
+|...++.||||.||+++-|...|.
T Consensus 11 ~~~m~l~~L~~f~~v~~~gs~t~AA 35 (315)
T 1uth_A 11 LRDIDLNLLVVFNQLLLDRSVSTAG 35 (315)
T ss_dssp -------------------------
T ss_pred cccCCHHHHHHHHHHHHcCCHHHHH
Confidence 6777888999999999999988764
No 206
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=38.80 E-value=18 Score=25.26 Aligned_cols=26 Identities=27% Similarity=0.187 Sum_probs=21.7
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYESS 72 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~s 72 (130)
||.|+|.+.+.|.+..+. +|..+.+-
T Consensus 86 faFV~F~~~e~A~~Al~~-~~~~l~gR 111 (126)
T 2hgm_A 86 EAFVQFASQELAEKALGK-HKERIGHR 111 (126)
T ss_dssp EEEEEESSTTHHHHHHTT-TTCCBTTB
T ss_pred EEEEEECCHHHHHHHHHH-CCCEECCE
Confidence 899999999999999885 77776653
No 207
>4g6x_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.73A {Catenulispora acidiphila}
Probab=35.48 E-value=31 Score=23.27 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=29.3
Q ss_pred HHHHhhhceeeEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101 36 QYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYES 71 (130)
Q Consensus 36 ~Yq~~rlrYyyAVvecds~~tA~~iY~e~dG~E~e~ 71 (130)
.+|.+-||.-+..|-.++.+.|...|.+.=|.+.-.
T Consensus 19 ~~~~~~Mri~~v~I~V~Dle~A~~FY~dvLGf~v~~ 54 (155)
T 4g6x_A 19 YFQSNAMRIHLTNVFVDDQAKAESFYTGKLGFLVKA 54 (155)
T ss_dssp ----CCCCCCEEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred eeccCceEEEEEEEEeCCHHHHHHHHHHHhCCEEEE
Confidence 678899999999999999999999999998987643
No 208
>3enc_A Protein PCC1; dimerization domain, keops, telomere, unknown function; 2.63A {Pyrococcus furiosus} PDB: 3eno_C
Probab=35.47 E-value=24 Score=24.02 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=15.7
Q ss_pred EEEeCCHHHHHHHHHhcC
Q psy7101 48 VVVFDSAESANKVYTECD 65 (130)
Q Consensus 48 Vvecds~~tA~~iY~e~d 65 (130)
++|++|.+.|..||+.+.
T Consensus 16 ~~e~~~~e~A~iVy~Sl~ 33 (87)
T 3enc_A 16 EMEFPSEDVAKVVYEAVL 33 (87)
T ss_dssp EEECSCHHHHHHHHHHHT
T ss_pred EEEeCCHHHHHHHHHHhC
Confidence 488999999999999763
No 209
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=34.36 E-value=25 Score=26.33 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=21.8
Q ss_pred eeEEEEeCCHHHHHHHHHhcCCcccc
Q psy7101 45 YYAVVVFDSAESANKVYTECDGMEYE 70 (130)
Q Consensus 45 yyAVvecds~~tA~~iY~e~dG~E~e 70 (130)
-||.|+|.+.+.|.+..+.|+|-.+.
T Consensus 138 g~afV~f~~~~~A~~A~~~l~~~~~~ 163 (261)
T 3sde_A 138 GKGFVEFAAKPPARKALERCGDGAFL 163 (261)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHSCEE
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCeEE
Confidence 48999999999999999999554443
No 210
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=34.35 E-value=34 Score=25.03 Aligned_cols=25 Identities=40% Similarity=0.464 Sum_probs=20.5
Q ss_pred eEEEEeCCHHHHHHHHHhcCCccccc
Q psy7101 46 YAVVVFDSAESANKVYTECDGMEYES 71 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E~e~ 71 (130)
||.|||.+.+.|.+..+..+ ..+.+
T Consensus 152 ~aFVeF~~~e~A~~A~~~~~-~~~~G 176 (193)
T 2voo_A 152 SIFVVFDSIESAKKFVETPG-QKYKE 176 (193)
T ss_dssp EEEEEESSHHHHHHHHHCTT-CEETT
T ss_pred EEEEEECCHHHHHHHHHhCC-CeECC
Confidence 89999999999999997654 45554
No 211
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.25 E-value=23 Score=24.33 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=24.8
Q ss_pred EEEEeCCHHHHHHHHHhcCCcccccccccc
Q psy7101 47 AVVVFDSAESANKVYTECDGMEYESSATRV 76 (130)
Q Consensus 47 AVvecds~~tA~~iY~e~dG~E~e~s~~~l 76 (130)
+.|+|++.+.|.+.-+ +||.++.+..-.+
T Consensus 52 ~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 52 MWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp EEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred EEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 7999999999999888 9999988865433
No 212
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=31.62 E-value=33 Score=22.79 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.9
Q ss_pred eEEEEeCCHHHHHHHHHh
Q psy7101 46 YAVVVFDSAESANKVYTE 63 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e 63 (130)
-.||||.|.+.|...|+.
T Consensus 55 ~viieFps~~aa~a~y~S 72 (94)
T 3lo3_A 55 QVILEFPSREDAYNWYHS 72 (94)
T ss_dssp EEEEEESSHHHHHHHHHS
T ss_pred EEEEECCCHHHHHHHHCC
Confidence 489999999999999874
No 213
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=29.62 E-value=38 Score=22.74 Aligned_cols=18 Identities=28% Similarity=0.409 Sum_probs=15.7
Q ss_pred eEEEEeCCHHHHHHHHHh
Q psy7101 46 YAVVVFDSAESANKVYTE 63 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e 63 (130)
-.||||.|.+.|...|+.
T Consensus 56 ~viieFpS~~aa~~~~~s 73 (99)
T 2fiu_A 56 NVVIEFPSVQHAIDCYNS 73 (99)
T ss_dssp EEEEEESSHHHHHHHHHS
T ss_pred EEEEECCCHHHHHHHHcC
Confidence 479999999999998864
No 214
>1s7i_A Hypothetical protein PA1349; structural genomics, protein structure initiative, pseudomon aeruginosa, MCSG, PSI; 1.80A {Pseudomonas aeruginosa} SCOP: d.58.4.9
Probab=26.74 E-value=47 Score=23.26 Aligned_cols=23 Identities=4% Similarity=0.014 Sum_probs=20.6
Q ss_pred eEEEEeCCHHHHHHHHHhcCCcc
Q psy7101 46 YAVVVFDSAESANKVYTECDGME 68 (130)
Q Consensus 46 yAVvecds~~tA~~iY~e~dG~E 68 (130)
|.||+|+|.+.|..|-+.|-...
T Consensus 87 ~~iie~~s~deA~e~A~~~P~~~ 109 (124)
T 1s7i_A 87 FYLIEARDLNQALQIAAKIPPGR 109 (124)
T ss_dssp EEEEEESSHHHHHHHHTTCGGGG
T ss_pred EEEEEeCCHHHHHHHHHhCCccC
Confidence 67999999999999999998764
No 215
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=26.05 E-value=31 Score=23.45 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=17.5
Q ss_pred hhHHhhhchhhhhhhHHHHhhh
Q psy7101 107 QADLMVHLPQIRDDHMKYISEL 128 (130)
Q Consensus 107 ~~~i~~~L~~iRe~h~~~isel 128 (130)
+..-+++|||.|.+++++-..+
T Consensus 25 ~~~~~~~~~~~~~~~~~~EKTI 46 (77)
T 3mtu_E 25 QSERTEALQQLRVNYGSFVSEY 46 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4556899999999999886543
No 216
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=26.03 E-value=14 Score=27.39 Aligned_cols=20 Identities=40% Similarity=0.496 Sum_probs=0.0
Q ss_pred HhhhceeeEEEEeCCHHHHH
Q psy7101 39 LNRLKYYYAVVVFDSAESAN 58 (130)
Q Consensus 39 ~~rlrYyyAVvecds~~tA~ 58 (130)
++.||||.||+++-|...|.
T Consensus 3 l~~L~~F~~va~~gs~s~AA 22 (312)
T 2h9b_A 3 LRHLRYFVAVVEEQSFTKAA 22 (312)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHhCCHHHHH
Confidence 45689999999999987764
No 217
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=25.41 E-value=15 Score=26.25 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=0.0
Q ss_pred hhceeeEEEEeCCHHHHHH
Q psy7101 41 RLKYYYAVVVFDSAESANK 59 (130)
Q Consensus 41 rlrYyyAVvecds~~tA~~ 59 (130)
.||||.||+++-|...|..
T Consensus 2 ~L~~f~~v~~~~s~s~AA~ 20 (300)
T 3mz1_A 2 GMRAFLRVVETGNFTRASA 20 (300)
T ss_dssp -------------------
T ss_pred cHHHHHHHHhcCCHHHHHH
Confidence 4889999999999876643
No 218
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=25.21 E-value=29 Score=27.52 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.3
Q ss_pred hhHHhhhchhhhhhhHHHHhhh
Q psy7101 107 QADLMVHLPQIRDDHMKYISEL 128 (130)
Q Consensus 107 ~~~i~~~L~~iRe~h~~~isel 128 (130)
+..-+++|||.|.++++++|+.
T Consensus 25 ~~~~~~~~~~~~a~~~s~~s~~ 46 (206)
T 3oa7_A 25 QSERTEALQQLRVNYGSFVSEY 46 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 5667899999999999999874
No 219
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=25.00 E-value=5.8 Score=24.16 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=17.0
Q ss_pred ccchhcHHHHHHHHHhhhceeeEEE
Q psy7101 25 EGNAYHREKLRQYQLNRLKYYYAVV 49 (130)
Q Consensus 25 ~~~~~~~e~lR~Yq~~rlrYyyAVv 49 (130)
.|++...|.|++|-.+ ||-|+++|
T Consensus 12 Pg~~aspEela~Y~~~-Lr~Yinlv 35 (41)
T 2l60_A 12 ELKKLSPEELNRYYAS-LRHYLNLV 35 (41)
T ss_dssp HHTTSCHHHHHHHHHH-HHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH-HHHHHHHh
Confidence 3555678889999877 77666554
No 220
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.01 E-value=58 Score=23.04 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=29.7
Q ss_pred hhcHHHHHHHHHhh----------hce--eeEEEEeCCHHHHHHHHHh----cCCccc
Q psy7101 28 AYHREKLRQYQLNR----------LKY--YYAVVVFDSAESANKVYTE----CDGMEY 69 (130)
Q Consensus 28 ~~~~e~lR~Yq~~r----------lrY--yyAVvecds~~tA~~iY~e----~dG~E~ 69 (130)
+.+.++|.-|=-++ ++| ==|||+|.+.+.|+.|-+. +.|+++
T Consensus 19 ~~~~e~L~LYFEn~rrsGGG~V~~v~~~~~~AvItF~d~~va~rVL~k~~H~L~~~~L 76 (104)
T 2dhx_A 19 AVPDELLTLYFENRRRSGGGPVLSWQRLGCGGVLTFREPADAERVLAQADHELHGAQL 76 (104)
T ss_dssp TSCHHHHHHHHHCTTTTCCCCEEEEEEETTEEEEEESSHHHHHHHHTCSCCBSSSSBC
T ss_pred CCChhHheEEEeCCCcCCCceeeEEEEcCCcEEEEEcChHHHHHHhcCCcceecCeEE
Confidence 33455777775552 222 2589999999999999998 777554
No 221
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.98 E-value=29 Score=20.25 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=19.4
Q ss_pred chhHHhhhchhhhhhhHHHHhhh
Q psy7101 106 PQADLMVHLPQIRDDHMKYISEL 128 (130)
Q Consensus 106 P~~~i~~~L~~iRe~h~~~isel 128 (130)
+=.+|-..|..||+-|.+|-++.
T Consensus 11 ~f~~FY~rlk~Ike~Hrr~P~~~ 33 (38)
T 2dt7_A 11 EFAEFYNRLKQIKEFHRKHPNEI 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCcc
Confidence 56678999999999999987654
No 222
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=21.84 E-value=19 Score=27.00 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=0.0
Q ss_pred HhhhceeeEEEEeCCHHHHH
Q psy7101 39 LNRLKYYYAVVVFDSAESAN 58 (130)
Q Consensus 39 ~~rlrYyyAVvecds~~tA~ 58 (130)
++.||||.||+++-|...|.
T Consensus 3 l~~L~~F~~vae~gS~s~AA 22 (313)
T 2h98_A 3 LRHLRYFVTVVEEQSISKAA 22 (313)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHhCCHHHHH
Confidence 45689999999999987764
No 223
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=21.63 E-value=19 Score=26.87 Aligned_cols=20 Identities=30% Similarity=0.489 Sum_probs=0.0
Q ss_pred HhhhceeeEEEEeC-CHHHHH
Q psy7101 39 LNRLKYYYAVVVFD-SAESAN 58 (130)
Q Consensus 39 ~~rlrYyyAVvecd-s~~tA~ 58 (130)
++.||||.||+++- |...|.
T Consensus 3 l~~L~~F~~v~~~gls~s~AA 23 (324)
T 1al3_A 3 LQQLRYIVEVVNHNLNVSSTA 23 (324)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHcccCHHHHH
Confidence 45688888999988 876653
No 224
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=21.15 E-value=45 Score=23.15 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=23.9
Q ss_pred EEEEeCCHHHHHHHHHhcCCccccccccc
Q psy7101 47 AVVVFDSAESANKVYTECDGMEYESSATR 75 (130)
Q Consensus 47 AVvecds~~tA~~iY~e~dG~E~e~s~~~ 75 (130)
+.|+|.+.+.|.+.-+ +||.++.+..-.
T Consensus 61 ~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~ 88 (95)
T 1ufw_A 61 MLVTFADSHSALSVLD-VDGMKVKGRAVK 88 (95)
T ss_dssp EEEECSCSHHHHHHHH-GGGSEETTEEEE
T ss_pred EEEEEcChHHHHHHHh-cCCeeeCCeEEE
Confidence 8999999999988887 999999886533
Done!