RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7101
(130 letters)
>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization,
protein binding; 2.29A {Homo sapiens}
Length = 1253
Score = 44.0 bits (103), Expect = 3e-06
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Query: 90 HFDPGKW-PLSSSSNISPQADLMVHLPQIRDDHMKYISELAR 130
H++ K +SS SPQ ++ + QIR+DHM++ISELAR
Sbjct: 324 HYEENKSRWTCTSSGSSPQYNICEQMIQIREDHMRFISELAR 365
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA
recognition motif, vincu alpha-actinin, nucleus, RNA
binding protein; 1.99A {Homo sapiens} PDB: 3h2u_B 3h2v_E
Length = 284
Score = 31.1 bits (71), Expect = 0.072
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
+AV+ +++AE A + + DG+ S RV
Sbjct: 228 FAVLEYETAEMAEEAQQQADGLSLGGSHLRVSF 260
Score = 25.3 bits (56), Expect = 6.2
Identities = 5/32 (15%), Positives = 10/32 (31%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVD 77
Y + +SA + ++ G V
Sbjct: 139 YGFAEYMKKDSAARAKSDLLGKPLGPRTLYVH 170
Score = 24.9 bits (55), Expect = 8.6
Identities = 5/31 (16%), Positives = 6/31 (19%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRV 76
A V + E A V
Sbjct: 59 TAFVTLLNGEQAEAAINAFHQSRLRERELSV 89
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain.,
transport protein; NMR {Mus musculus}
Length = 177
Score = 29.4 bits (66), Expect = 0.23
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHF 91
A V F+ A K + G+ + + L V + + H
Sbjct: 131 TADVHFERRADALKAMKQYKGVPLDGRPMDIQL--VASQIDLEHHH 174
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 0.28
Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 49/138 (35%)
Query: 7 LELVEQSEGEDSAEEESTEGNAYHREKLRQYQLNRL------------KYYYAVVVF--- 51
LEL + E E A HR + Y + + +Y+Y+ +
Sbjct: 433 LELKVKLENEY----------ALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK 482
Query: 52 -----DSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNISP 106
+ V+ +D RF+ D +S S ++
Sbjct: 483 NIEHPERMTLFRMVF--------------LDFRFLEQKIRHD-----STAWNASGSILNT 523
Query: 107 QADLMVHLPQIRDDHMKY 124
L + P I D+ KY
Sbjct: 524 LQQLKFYKPYICDNDPKY 541
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain,
RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 96
Score = 28.2 bits (63), Expect = 0.33
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTE 86
V + S + A + + +G + E+ +V ++PD+
Sbjct: 55 AVVNVTYSSKDQARQALDKLNGFQLENFTLKVA--YIPDEMA 94
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin
modification, transcription regulation, structural
genomics, structural genomics consortium; 1.30A {Homo
sapiens}
Length = 110
Score = 28.5 bits (64), Expect = 0.35
Identities = 6/33 (18%), Positives = 9/33 (27%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
A V+F S A + + L
Sbjct: 50 LARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 101
Score = 28.0 bits (63), Expect = 0.44
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
YA + F S E A + C+ E E A R++L
Sbjct: 55 YAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain,
RNA-protein complex, nucleolus, structural protein/RNA
complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1
d.58.7.1 PDB: 1rkj_A 2krr_A
Length = 175
Score = 28.3 bits (64), Expect = 0.50
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
A + F S A K E G E + + +
Sbjct: 138 IAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition
motif, RRM, RNA binding domain, RBD, RNP, structural
genomics; NMR {Mus musculus} SCOP: d.58.7.1
Length = 97
Score = 27.6 bits (62), Expect = 0.62
Identities = 6/35 (17%), Positives = 15/35 (42%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80
+A + ++S ++A + G R+ + F
Sbjct: 55 FAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding
domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 98
Score = 27.3 bits (61), Expect = 0.73
Identities = 7/33 (21%), Positives = 14/33 (42%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
A+V F+S + A + + S ++ L
Sbjct: 59 EAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; 2.00A {Homo
sapiens} PDB: 2ek6_A
Length = 95
Score = 26.9 bits (60), Expect = 1.0
Identities = 5/24 (20%), Positives = 10/24 (41%)
Query: 46 YAVVVFDSAESANKVYTECDGMEY 69
A+V F+S + A + +
Sbjct: 59 EAMVAFESRDEATAAVIDLNDRPI 82
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP,
RBD, poly(U) binding, tandem, acetylation, cytopla
nucleus; 2.70A {Saccharomyces cerevisiae}
Length = 166
Score = 27.5 bits (62), Expect = 1.1
Identities = 7/33 (21%), Positives = 11/33 (33%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
Y V F S + A G + R++
Sbjct: 131 YGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINW 163
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 26.8 bits (59), Expect = 1.3
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 46 YAVVVFDSAESANKVYTECDG---MEYESSATRVDLRFV 81
Y+ + + E + + Y +G ++ + L FV
Sbjct: 65 YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFV 103
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA
processing, mRNA splicing, transport, nucleus,
RNA-binding, spliceosome, transport; NMR {Mus musculus}
Length = 124
Score = 26.6 bits (59), Expect = 1.6
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
A V F+ A K + G+ + + L
Sbjct: 78 TADVHFERRADALKAMKQYKGVPLDGRPMDIQL 110
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural
genomi center for structural genomics, JCSG, protein
structure INI PSI-biology; 2.54A {Homo sapiens} PDB:
1no8_A
Length = 107
Score = 26.5 bits (59), Expect = 1.6
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
A V F+ A K + +G+ + + L
Sbjct: 72 TADVHFERKADALKAMKQYNGVPLDGRPMNIQL 104
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM
domain, RBD, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 97
Score = 26.3 bits (58), Expect = 1.6
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
A + + + +A + + G+ + RV L
Sbjct: 58 RAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVAL 90
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA
splicing, adenine, mRNA processing, nucleus,
phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo
sapiens} PDB: 2f9d_A 2f9j_A 2fho_B
Length = 115
Score = 26.6 bits (59), Expect = 1.8
Identities = 6/34 (17%), Positives = 9/34 (26%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLR 79
A VV++ A G + V
Sbjct: 49 TAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 99
Score = 26.1 bits (58), Expect = 2.1
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
YA V F + E A + +G + S V L
Sbjct: 53 YAFVHFSNREDAVEAMKALNGKVLDGSPIEVTL 85
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 102
Score = 26.1 bits (58), Expect = 2.1
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVD 77
+ V F+S E A + E + + +D
Sbjct: 56 FGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM,
splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo
sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Length = 282
Score = 26.4 bits (57), Expect = 2.8
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
A V+F SA G + R+
Sbjct: 54 QAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding
protein; NMR {Homo sapiens}
Length = 101
Score = 25.7 bits (57), Expect = 3.3
Identities = 13/46 (28%), Positives = 17/46 (36%)
Query: 33 KLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
LR + R +A V F+ A DG S RV+L
Sbjct: 26 PLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVEL 71
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer,
oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2
d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Length = 460
Score = 26.4 bits (58), Expect = 3.5
Identities = 4/22 (18%), Positives = 7/22 (31%)
Query: 77 DLRFVPDDTEFDEHFDPGKWPL 98
+L VP + + W
Sbjct: 130 NLVSVPFEEQAFPGLRKEDWGP 151
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing,
transcription, RNA binding protein, mRNA processing; NMR
{Homo sapiens} PDB: 2yh1_A
Length = 198
Score = 25.8 bits (57), Expect = 3.8
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
YA + ++ +GM+ V
Sbjct: 158 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 190
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A
{Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Length = 216
Score = 26.1 bits (58), Expect = 3.8
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNI 104
+A V ++ E+A + + + +V R + D + + I
Sbjct: 72 FAFVEYEVPEAAQLALEQMNSVMLGGRNIKVG-RPSNIG-QAQPIIDQLAEEARAFNRI 128
Score = 25.4 bits (56), Expect = 6.0
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
Y + ++ A+S+ + + + RV
Sbjct: 169 YGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGK 201
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 95
Score = 25.2 bits (56), Expect = 3.9
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVD 77
+A V F++ + A + +GME + RV
Sbjct: 59 FAFVYFENVDDAKEAKERANGMELDGRRIRVS 90
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation
factors PAIP1 and PAIP2, translation-RNA complex; 2.00A
{Homo sapiens} PDB: 1cvj_A*
Length = 213
Score = 25.7 bits (57), Expect = 4.0
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVD 77
Y V F++ E+A + + +GM V
Sbjct: 145 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 176
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25,
CFIM68, CPSF5, CPSF6, CPSF, 3' END processing,
processing, cleavage factor; 2.90A {Homo sapiens} PDB:
3q2t_C
Length = 229
Score = 25.8 bits (56), Expect = 4.1
Identities = 9/61 (14%), Positives = 16/61 (26%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNIS 105
+A+V S S+ K+ E V ++F+ S
Sbjct: 114 FALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQFLSQFEMQSRKTTQSGQMSGEGK 173
Query: 106 P 106
Sbjct: 174 A 174
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha
helices, oxidoreductase; HET: NDP MTX; 1.95A
{Streptococcus pneumoniae}
Length = 190
Score = 25.6 bits (57), Expect = 4.1
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 74 TRVDLRFVPDDTEFDEHFDPGKWPLSSS 101
T + R DT F FD + SS
Sbjct: 139 THIHARV-EGDTYFPAEFDLSLFETVSS 165
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
d.58.7.1
Length = 96
Score = 25.2 bits (56), Expect = 4.2
Identities = 6/32 (18%), Positives = 13/32 (40%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVD 77
YA + F S ++++ +G + V
Sbjct: 50 YAFINFASFDASDAAIEAMNGQYLCNRPITVS 81
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein,
ribosome biogenesis, RNA-binding, rRNA processing; NMR
{Saccharomyces cerevisiae} PDB: 2osq_A
Length = 108
Score = 25.3 bits (56), Expect = 4.4
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
+A V F+ AESA K E G + + V
Sbjct: 67 FAFVEFEEAESAAKAIEEVHGKSFANQPLEVVY 99
>2la6_A RNA-binding protein FUS; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, RNA recognition; NMR {Homo
sapiens}
Length = 99
Score = 25.0 bits (55), Expect = 4.5
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVD 77
A V FD SA DG E+ + +V
Sbjct: 65 EATVSFDDPPSAKAAIDWFDGKEFSGNPIKVS 96
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR
{Homo sapiens}
Length = 116
Score = 25.4 bits (56), Expect = 4.6
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
A V FD SA DG E+ + +V
Sbjct: 59 EATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSF 91
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP,
RNA, spicing, translation; NMR {Homo sapiens} SCOP:
d.58.7.1 d.58.7.1
Length = 198
Score = 25.6 bits (56), Expect = 4.8
Identities = 6/34 (17%), Positives = 11/34 (32%)
Query: 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
A+V A + +G + R+ L
Sbjct: 42 ENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 75
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase,
SR protein, PRE-mRNA splicing, at binding, chromosome
partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP:
d.58.7.1 PDB: 2o3d_A 1wg4_A
Length = 115
Score = 25.2 bits (55), Expect = 4.8
Identities = 10/63 (15%), Positives = 17/63 (26%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSSSNIS 105
VV F E + D ++ S V D + + S S
Sbjct: 53 TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSR 112
Query: 106 PQA 108
++
Sbjct: 113 SRS 115
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 115
Score = 25.3 bits (56), Expect = 5.0
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVD 77
A + F + E A + +G + ++
Sbjct: 69 QAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif,
RRM, RNP, structural genomics, NPPSFA; NMR {Mus
musculus} SCOP: d.58.7.1
Length = 111
Score = 24.8 bits (54), Expect = 6.0
Identities = 6/46 (13%), Positives = 15/46 (32%)
Query: 33 KLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
Y ++ A V + +E A + + + + + L
Sbjct: 52 NSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASL 97
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing
factor, RNA protein complex, SMN, binding protein-RNA
complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Length = 129
Score = 25.1 bits (55), Expect = 6.4
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVD 77
+A V F++ + A + +GME + RVD
Sbjct: 90 FAFVYFENVDDAKEAKERANGMELDGRRIRVD 121
>1x4e_A RNA binding motif, single-stranded interacting protein 2;
structural genomics, RRM domain, NPPSFA; NMR {Homo
sapiens} SCOP: d.58.7.1
Length = 85
Score = 24.4 bits (54), Expect = 7.1
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRV 76
Y V FDS +A K T ++ +
Sbjct: 49 YGFVDFDSPSAAQKAVTALKASGVQAQMAKQ 79
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
d.58.7.1
Length = 98
Score = 24.5 bits (54), Expect = 7.2
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
+ V + E A K + G + V +
Sbjct: 52 FGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRI 84
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed
protein, RRM, U1A, RNA binding protein; NMR {Homo
sapiens}
Length = 127
Score = 24.9 bits (54), Expect = 7.3
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
A +VF + ESA G ++ + +
Sbjct: 74 KAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM
domain, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
d.58.7.1
Length = 108
Score = 24.8 bits (54), Expect = 7.6
Identities = 10/56 (17%), Positives = 15/56 (26%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGKWPLSSS 101
VV F E + D ++ S V D + + SS
Sbjct: 52 TGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSSGPSS 107
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA
complex, RNA binding protein/RNA complex; NMR {Homo
sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Length = 229
Score = 25.0 bits (54), Expect = 8.4
Identities = 7/51 (13%), Positives = 14/51 (27%)
Query: 45 YYAVVVFDSAESANKVYTECDGMEYESSATRVDLRFVPDDTEFDEHFDPGK 95
A+V A + +G + R+ L + E +
Sbjct: 73 ENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQG 123
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 92
Score = 24.1 bits (53), Expect = 9.5
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
YA V + AE A + D E++ V L
Sbjct: 46 YAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.129 0.367
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,926,438
Number of extensions: 100496
Number of successful extensions: 275
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 70
Length of query: 130
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 47
Effective length of database: 4,384,350
Effective search space: 206064450
Effective search space used: 206064450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (23.8 bits)