RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7101
(130 letters)
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 30.7 bits (69), Expect = 0.016
Identities = 10/76 (13%), Positives = 22/76 (28%)
Query: 3 LLSPLELVEQSEGEDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYT 62
+ P++ + + E+ + + + +R A V F E A+
Sbjct: 16 MFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQ 75
Query: 63 ECDGMEYESSATRVDL 78
DG +
Sbjct: 76 TLDGRWFGGRQITAQA 91
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 28.1 bits (62), Expect = 0.12
Identities = 7/44 (15%), Positives = 13/44 (29%)
Query: 35 RQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
+ L + V + E A K + G + V +
Sbjct: 34 KNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRI 77
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 28.0 bits (62), Expect = 0.15
Identities = 6/37 (16%), Positives = 15/37 (40%)
Query: 44 YYYAVVVFDSAESANKVYTECDGMEYESSATRVDLRF 80
A V ++ E A + + + + E + + +R
Sbjct: 48 RGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 84
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 27.7 bits (61), Expect = 0.19
Identities = 10/63 (15%), Positives = 18/63 (28%)
Query: 16 EDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATR 75
+D +E T L + L YA + ++ +GM+
Sbjct: 15 DDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 74
Query: 76 VDL 78
V
Sbjct: 75 VQR 77
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 26.9 bits (59), Expect = 0.33
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 44 YYYAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
+ + ++ A E D M RV
Sbjct: 44 KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 78
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 26.8 bits (59), Expect = 0.33
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 37 YQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
Y + A V F+ A K + +G+ + + L
Sbjct: 34 YDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQL 75
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 26.2 bits (57), Expect = 0.68
Identities = 14/63 (22%), Positives = 21/63 (33%)
Query: 16 EDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATR 75
E+ E+ + L + +A V F E A K Y E DG ++
Sbjct: 22 EEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLH 81
Query: 76 VDL 78
V
Sbjct: 82 VLP 84
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 26.1 bits (57), Expect = 0.80
Identities = 6/33 (18%), Positives = 9/33 (27%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
A VV++ A G + V
Sbjct: 48 TAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLY 80
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 25.7 bits (56), Expect = 0.86
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 44 YYYAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
+ V + S A +G + R D
Sbjct: 49 CGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 83
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 25.6 bits (56), Expect = 1.1
Identities = 6/38 (15%), Positives = 13/38 (34%)
Query: 41 RLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
+ +A V + + +A DG ++L
Sbjct: 47 SVHKGFAFVQYVNERNARAAVAGEDGRMIAGQVLDINL 84
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 25.1 bits (54), Expect = 1.1
Identities = 9/55 (16%), Positives = 14/55 (25%)
Query: 16 EDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYE 70
+ + K + Y V FDS +A K T +
Sbjct: 12 DQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ 66
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 25.1 bits (54), Expect = 1.6
Identities = 10/63 (15%), Positives = 23/63 (36%)
Query: 16 EDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATR 75
E S E+ ++ + + + + + V F++ + A +G + R
Sbjct: 19 EQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIR 78
Query: 76 VDL 78
VD
Sbjct: 79 VDQ 81
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 25.1 bits (54), Expect = 1.8
Identities = 12/62 (19%), Positives = 23/62 (37%)
Query: 16 EDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATR 75
ED +E+ + L + YA+V +++ + A +G E +
Sbjct: 21 EDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQ 80
Query: 76 VD 77
VD
Sbjct: 81 VD 82
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 24.7 bits (53), Expect = 2.3
Identities = 8/50 (16%), Positives = 18/50 (36%)
Query: 29 YHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
KL + ++ Y V + + A K +G+ ++ +V
Sbjct: 29 IESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSY 78
>d2cx1a2 d.17.6.4 (A:1-90) Hypothetical protein APE0525,
N-terminal domain {Archaeon Aeropyrum pernix [TaxId:
56636]}
Length = 90
Score = 24.6 bits (53), Expect = 2.5
Identities = 14/39 (35%), Positives = 17/39 (43%)
Query: 32 EKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYE 70
+K R+ L RLK YY + F V D EYE
Sbjct: 19 KKERRSLLERLKPYYTRIPFSEKADLRLVKARTDSGEYE 57
>d2rspa_ b.50.1.1 (A:) Rous sarcoma virus protease {Rous sarcoma
virus, strain pr-C [TaxId: 11886]}
Length = 124
Score = 24.8 bits (54), Expect = 2.7
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 83 DDTEFDEHFDPGKWPLSSSSNI 104
D T E P WP+ ++N
Sbjct: 41 DITIISEEDWPTDWPVMEAANP 62
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 24.2 bits (52), Expect = 2.9
Identities = 10/35 (28%), Positives = 14/35 (40%)
Query: 44 YYYAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
+A V F+ AE A + E RV+L
Sbjct: 47 RGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 81
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 24.3 bits (52), Expect = 3.0
Identities = 12/63 (19%), Positives = 22/63 (34%)
Query: 16 EDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATR 75
E+ ++ +E +L + Y + E+A +G E+ A R
Sbjct: 22 EEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALR 81
Query: 76 VDL 78
VD
Sbjct: 82 VDN 84
>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1
protease {Human immunodeficiency virus type 1 [TaxId:
11676]}
Length = 99
Score = 24.0 bits (53), Expect = 3.9
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 83 DDTEFDEHFDPGKW 96
DDT +E PG+W
Sbjct: 29 DDTVIEEMSLPGRW 42
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 23.7 bits (51), Expect = 4.3
Identities = 6/35 (17%), Positives = 10/35 (28%)
Query: 44 YYYAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
YA V F A + + + R+
Sbjct: 42 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 76
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 23.4 bits (50), Expect = 5.1
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 43 KYYYAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
Y YA V F S + + +G+ + +V
Sbjct: 43 SYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSY 78
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 23.5 bits (50), Expect = 5.6
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 44 YYYAVVVFDSAESANKVYTECDGMEYESSATRV 76
+A V F++ + A + +GME + RV
Sbjct: 51 RGFAFVYFENVDDAKEAKERANGMELDGRRIRV 83
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 23.5 bits (50), Expect = 5.6
Identities = 11/63 (17%), Positives = 20/63 (31%)
Query: 16 EDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATR 75
E +E + R L + + +A + F E A + G Y+
Sbjct: 22 ETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 81
Query: 76 VDL 78
V+
Sbjct: 82 VEW 84
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 23.5 bits (50), Expect = 5.7
Identities = 9/63 (14%), Positives = 19/63 (30%)
Query: 16 EDSAEEESTEGNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATR 75
+ + K+ + L + V +D+ SA +G + +
Sbjct: 32 DQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLK 91
Query: 76 VDL 78
V L
Sbjct: 92 VQL 94
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 23.0 bits (49), Expect = 7.9
Identities = 6/54 (11%), Positives = 14/54 (25%), Gaps = 1/54 (1%)
Query: 26 GNAYHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTE-CDGMEYESSATRVDL 78
G ++ + V F + + A K + C ++
Sbjct: 33 GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEW 86
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 23.1 bits (49), Expect = 9.2
Identities = 9/50 (18%), Positives = 17/50 (34%)
Query: 29 YHREKLRQYQLNRLKYYYAVVVFDSAESANKVYTECDGMEYESSATRVDL 78
+ + ++ Y V F S E A+ D ++ RV+
Sbjct: 36 VVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNK 85
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 23.2 bits (49), Expect = 9.8
Identities = 8/56 (14%), Positives = 17/56 (30%), Gaps = 1/56 (1%)
Query: 46 YAVVVFDSAESANKVYTECDGMEYESSATRVDL-RFVPDDTEFDEHFDPGKWPLSS 100
+ F + SA E+ ++ + + + +P K SS
Sbjct: 48 RVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKSGPSS 103
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.312 0.129 0.367
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 466,857
Number of extensions: 18806
Number of successful extensions: 62
Number of sequences better than 10.0: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 37
Length of query: 130
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 54
Effective length of database: 1,364,116
Effective search space: 73662264
Effective search space used: 73662264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (22.7 bits)