BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7103
         (467 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3P8C|A Chain A, Structure And Control Of The Actin Regulatory Wave Complex
          Length = 1253

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/66 (66%), Positives = 49/66 (74%)

Query: 402 ELEGLLAVNRXXXXXXXXXXXXDDYDAMLHEANHNVLAPYGRITLHIFWELNYDFLPNYC 461
           EL+GLL +NR            D +DAM  EANHNV APYGRITLH+FWELNYDFLPNYC
Sbjct: 797 ELDGLLEINRMTHKLLSRYLTLDGFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYC 856

Query: 462 YNGATN 467
           YNG+TN
Sbjct: 857 YNGSTN 862


>pdb|3U28|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From
           Saccharomyces Cerevisiae
 pdb|3UAI|A Chain A, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
           Saccharomyces Cerevisiae
          Length = 400

 Score = 31.6 bits (70), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 42/94 (44%), Gaps = 14/94 (14%)

Query: 194 LLQKIFVQLLVRLCSHSA-PAEELSNKDDL-TLLFSAITSLCPPYN------VIWRKSAA 245
           LL K F +LLVR   ++  PA     K DL + + S + +L  P N      V W K   
Sbjct: 24  LLLKNFDKLLVRSGHYTPIPAGSSPLKRDLKSYISSGVINLDKPSNPSSHEVVAWIKRIL 83

Query: 246 EILMSLSSQALTPKVVQYVHDKGCIALCIENMTR 279
               +  S  L PKV       GC+ +CI+  TR
Sbjct: 84  RCEKTGHSGTLDPKVT------GCLIVCIDRATR 111


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,372,165
Number of Sequences: 62578
Number of extensions: 448453
Number of successful extensions: 1013
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 4
length of query: 467
length of database: 14,973,337
effective HSP length: 102
effective length of query: 365
effective length of database: 8,590,381
effective search space: 3135489065
effective search space used: 3135489065
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)