RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy7103
         (467 letters)



>gnl|CDD|218846 pfam05994, FragX_IP, Cytoplasmic Fragile-X interacting family.
           CYFIP1/2 (Cytoplasmic fragile X mental retardation
           interacting protein) like proteins for a highly
           conserved protein family. The function of CYFIPs is
           unclear, but CYFIP interaction with fragile X mental
           retardation interacting protein (FMRP) involves the
           domain of FMRP which also mediating homo- and
           heteromerization.
          Length = 815

 Score = 99.0 bits (247), Expect = 5e-22
 Identities = 41/69 (59%), Positives = 49/69 (71%), Gaps = 3/69 (4%)

Query: 402 ELEGLLAVNRLCHKLLSK-LLGLDDYDAMLHEANHNVL--APYGRITLHIFWELNYDFLP 458
           ELE L+ + RL HKLLS+ L+ LD +D M  EANHN    +P  RI LH+FWELNYDFLP
Sbjct: 407 ELERLVDILRLTHKLLSEYLIPLDPFDDMFREANHNDSPNSPQSRILLHVFWELNYDFLP 466

Query: 459 NYCYNGATN 467
           NY YN + N
Sbjct: 467 NYFYNSSPN 475


>gnl|CDD|215574 PLN03099, PIR, Protein PIR; Provisional.
          Length = 1232

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)

Query: 402 ELEGLLAVNRLCHKLLSKLLGLDDYDAMLHEANHNV--LAPYGRITLHIFWELNYDFLPN 459
           EL+ L+ + RL H+LLS+ L +D +  ML E   N+  ++   R+   I+ E+  DFLPN
Sbjct: 753 ELQRLVEILRLTHELLSEHLSIDPFSLMLGEMQENISLVSFSSRLASQIWSEMQNDFLPN 812

Query: 460 Y 460
           +
Sbjct: 813 F 813


>gnl|CDD|215240 PLN02439, PLN02439, arginine decarboxylase.
          Length = 559

 Score = 28.9 bits (65), Expect = 7.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 387 KFKLRSLDGRKKNDSELEGLLAVNRLCHKLLSKLLGLDDYDAMLH 431
           + K   +   K+    LE   AV+ LC +L+SK +G  D  A  H
Sbjct: 345 QLKQECVRLFKEGLLSLEQRAAVDGLC-ELVSKRVGASDPVATYH 388


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0662    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,776,839
Number of extensions: 2155140
Number of successful extensions: 1691
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1688
Number of HSP's successfully gapped: 9
Length of query: 467
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 367
Effective length of database: 6,502,202
Effective search space: 2386308134
Effective search space used: 2386308134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.4 bits)