RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy7103
(467 letters)
>3p8c_A Cytoplasmic FMR1-interacting protein 1; actin polymerization,
protein binding; 2.29A {Homo sapiens}
Length = 1253
Score = 115 bits (289), Expect = 1e-27
Identities = 51/66 (77%), Positives = 58/66 (87%)
Query: 402 ELEGLLAVNRLCHKLLSKLLGLDDYDAMLHEANHNVLAPYGRITLHIFWELNYDFLPNYC 461
EL+GLL +NR+ HKLLS+ L LD +DAM EANHNV APYGRITLH+FWELNYDFLPNYC
Sbjct: 797 ELDGLLEINRMTHKLLSRYLTLDGFDAMFREANHNVSAPYGRITLHVFWELNYDFLPNYC 856
Query: 462 YNGATN 467
YNG+TN
Sbjct: 857 YNGSTN 862
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 3e-08
Identities = 63/456 (13%), Positives = 136/456 (29%), Gaps = 138/456 (30%)
Query: 52 EKDDKLYNMLPLFCKVFGNSNSADMTDKFRDVHQFCDHVSRLMVTKVCQRASNQSTEIAS 111
E+ D+LYN +F K +VSR
Sbjct: 114 EQRDRLYNDNQVFAK---------------------YNVSR------------------- 133
Query: 112 CAIAKFLEIENS--EESSSGWMLL--------STLNLLAAGDVSLVEVM----------- 150
+ +L++ + E + +L+ + + L + M
Sbjct: 134 --LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 151 --TKASLPSTLVK-CLYLFFDLPQMNEEEANITDVNSDFTPRERRILLQKIFVQ-LLVRL 206
+ ++ L K + + ++ +NI RR+L K + LLV L
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV-L 250
Query: 207 CSHSAPAEELSNKDDL--------TLLFSAITSLCPPYNVIWRKSAAEILMSLSSQALTP 258
+ N LL + + + + + I + S LTP
Sbjct: 251 -------LNVQNAKAWNAFNLSCKILLTTRFKQV---TDFLSAATTTHISLDHHSMTLTP 300
Query: 259 KVVQYVHDKGCIALCIENMTRRKGQDLTPLEIVE---MFVSVFC-FLKDSSEVSQILLKD 314
K + ++ + QDL P E++ +S+ ++D
Sbjct: 301 D-----EVKSLLLKYLDC----RPQDL-PREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 315 FKEAHGYTFLKNFLINLENDRSSEAQEAIRNL-ILM------IATLSMCGYVELRPNAAS 367
+ T +++ L LE +E ++ L + LS+ + ++ +
Sbjct: 351 NCDKLT-TIIESSLNVLE---PAEYRKMFDRLSVFPPSAHIPTILLSLI-WFDVIKS--- 402
Query: 368 MGCIFQILGFCMPQPSGRGKFKLRSLDGRKKNDSELEGLLAVNRLCHKLLSKLLGLDDYD 427
+ ++ K SL ++ +S + + + +L + +
Sbjct: 403 --DVMVVV----------NKLHKYSLVEKQPKESTI-------SI-PSIYLELKVKLENE 442
Query: 428 AMLHEANHNVLAPYGRITLHIFWELNYDFLPNYCYN 463
LH +++ Y +L +L Y Y+
Sbjct: 443 YALHR---SIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Score = 46.8 bits (110), Expect = 2e-05
Identities = 68/452 (15%), Positives = 128/452 (28%), Gaps = 112/452 (24%)
Query: 53 KDDKLYNMLPLFCKVF----GNSNSADMTDKFRDVHQFCDHVSRL-MVTKVCQRASNQST 107
K+ + K+F N NS + + L M+ K+ + T
Sbjct: 172 LSYKVQCKMD--FKIFWLNLKNCNSPE---------------TVLEMLQKLLYQIDPNWT 214
Query: 108 EIASCAIAKFLEIENSEESSSGWMLLSTLN--LLAAGDVSLVEVMTKASLPS-TLV--KC 162
+ + L I + + + LL +V + +L L+ +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF 274
Query: 163 LYLFFDLPQMNEEEANITDVNSDFTPRERRILLQKIFVQLLVRLCSHSAPAEELSNKDDL 222
+ L ++ + TP E + LL K L P E L+
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-----PREVLTT---N 326
Query: 223 TLLFSAITSLCPPYNVIW---RKSAAEILMSLSSQALTPKVVQYVHDKGCIALCIENMTR 279
S I W + + L ++ I +
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTI------------------IESSLNV--- 365
Query: 280 RKGQDLTPLEIVEMFVSVFCFLKD---SSEVSQILLKDFKEA---------HGYTFL--- 324
L P E +MF + F + + ++ D ++ H Y+ +
Sbjct: 366 -----LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 325 -KNFLINLENDRSSEAQEAIRNLILMIATLSMCGYVELR---PNAASM----GCIFQILG 376
K I++ E + + N + ++ Y + + + +G
Sbjct: 421 PKESTISI-PSIYLELKVKLENEYALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 377 FCMPQPSGRGKFKLRS---LD----GRK-KNDSELEGLLAVNRLCHKLLSKLLGLDDYDA 428
+ + L LD +K ++DS A N +L+ L L Y
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDS-----TAWNA-SGSILNTLQQLKFYKP 532
Query: 429 MLHEANHNVLAPYGRITLHIFWELNYDFLPNY 460
+ + N Y R+ I DFLP
Sbjct: 533 YICD-NDPK---YERLVNAIL-----DFLPKI 555
Score = 31.4 bits (70), Expect = 0.88
Identities = 31/227 (13%), Positives = 66/227 (29%), Gaps = 66/227 (29%)
Query: 249 MSLSSQALTPKVVQ-YVHDKGCIALCIENMTRRKGQDLTPLEIVEMFVS---------VF 298
+ + +V + C +++M + L+ EI + +S +F
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKD--VQDMPK---SILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 299 -CFLKDSSEVSQILLKDFKEAHGYTFLKNFLINLENDRSSEAQEAI--RNLIL------- 348
L E+ Q +++ + Y FL + + + S + I R+ +
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRIN-YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 349 --------MIATLSMCGYVELRPNAASMGCIFQILGFCMPQPSGRGKFKL-----RSLD- 394
L ELRP + I G + G GK + S
Sbjct: 128 KYNVSRLQPYLKLRQALL-ELRPAKN----VL-IDG--VL---GSGKTWVALDVCLSYKV 176
Query: 395 -------------GRKKNDSELEGLLAVNRLCHKLLSKLLGLDDYDA 428
+ + L + +L +++ D+ +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETV--LEMLQKLLYQIDPNWTSRSDHSS 221
Score = 31.4 bits (70), Expect = 0.90
Identities = 15/94 (15%), Positives = 31/94 (32%), Gaps = 29/94 (30%)
Query: 41 FSHSVNHLSEKEKDDKLYNMLPLFCKVFGN---------------SNSADMTDKFRDVHQ 85
+SH +HL E ++ + LF VF + + S + + + +
Sbjct: 474 YSHIGHHLKNIEHPER----MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 86 FCDHVSRLMVTKVCQRASNQSTEIASCAIAKFLE 119
+ ++ ++ E AI FL
Sbjct: 530 YKPYICD----------NDPKYERLVNAILDFLP 553
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 1e-04
Identities = 74/484 (15%), Positives = 129/484 (26%), Gaps = 180/484 (37%)
Query: 12 TGGVAPSSHEDSSQHSALGVMHLKKLFAEFSHSVNHLSEKEK----DDKLYNMLPLFCKV 67
T G A + E ++ L +F V+ L E K D L L F
Sbjct: 45 TEGFA-ADDEPTTPAE---------LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC 94
Query: 68 F--GNSNSADMTDKFRDVHQFCDHVSRLMVTKVCQRASNQSTEIASCAIAKFLEIENSEE 125
+ GN D+H AK L+ ++
Sbjct: 95 YLEGN-----------DIHAL---------------------------AAKLLQENDTTL 116
Query: 126 SSSGWMLLSTLNLLAAGDVSLVEVMTKASLPSTLVKCLYLFFDLPQMNEEEANITDV--- 182
+ ++ + + K S S L + + E A + +
Sbjct: 117 VKTKELIKNYITARIMAKRPF----DKKS-NSALFRAV---------GEGNAQLVAIFGG 162
Query: 183 --NSD--FTPRERRILLQKIFVQLLVRLCSHSAPAEELSNKDDLTLLFSAITSLCPPYNV 238
N+D F E L+ ++ + L
Sbjct: 163 QGNTDDYF--EE----LRDLY--------QTYHV---------------LVGDLI----- 188
Query: 239 IWRKSAAEILMSLSSQALTPKVVQYVHDKGC-IALCIENMTRRKGQDLTPLEIVEMFVSV 297
K +AE L L T + V +G I +EN + +D
Sbjct: 189 ---KFSAETLSELIR---TTLDAEKVFTQGLNILEWLENPSNTPDKD------------- 229
Query: 298 FCFLKDSSEVS--QILLKDFKEAHGYTFLKNFLINLEN--DRSSEAQEAIRNLILMIATL 353
+L S +S I + AH K A + L+ +A +
Sbjct: 230 --YL-LSIPISCPLIGVIQL--AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVA-I 283
Query: 354 SMCG-YVELRPNAAS-MGCIFQILGF----CMPQPSGRGKFKLRSLDGRKKNDSELEG-- 405
+ + + + +F I G P S SL+ EG
Sbjct: 284 AETDSWESFFVSVRKAITVLFFI-GVRCYEAYPNTSLPPSILEDSLENN-------EGVP 335
Query: 406 --LLAVNRLCHKLLSKLLGLDDYDAMLHEANHNVLAPYGRITLHIFWELNYDFLPNYCYN 463
+L+++ L + + + + N ++ P G+ + L N
Sbjct: 336 SPMLSISNLTQEQVQDYVN---------KTNSHL--PAGK---QVEISL---------VN 372
Query: 464 GATN 467
GA N
Sbjct: 373 GAKN 376
Score = 38.1 bits (88), Expect = 0.007
Identities = 34/244 (13%), Positives = 73/244 (29%), Gaps = 85/244 (34%)
Query: 239 IWRKSAAEILMSLSSQALT------PKVVQYVHDKGCIALCIENMTRRKGQDLTPLEIVE 292
+W + A ++ P + +H G KG+ I E
Sbjct: 1645 VWNR-ADNHFKDTYGFSILDIVINNPVNL-TIHFGG-----------EKGK-----RIRE 1686
Query: 293 MFVSVFCF--LKDSSEVSQILLKDFKE-AHGYTFL--KNFLINL-ENDRSSEAQEAIRNL 346
+ + F + D ++ + K+ E + YTF K L + + Q A+
Sbjct: 1687 NYSA-MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL-SATQF-----TQPAL--- 1736
Query: 347 ILMIATLSMCGYVELR------PNAA----SMG------CIFQILGFCMPQPSG------ 384
+ + +L+ +A S+G + ++ S
Sbjct: 1737 ----TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI----ESLVEVVFY 1788
Query: 385 RGKFKLRSLDGRKKNDSELEGLLAVNRLCHKLLSKLLGLDDYDAMLHE-----------A 433
RG ++ R + G++A+N ++ + ++
Sbjct: 1789 RGMT-MQVAVPRDELGRSNYGMIAIN---PGRVAASFSQEALQYVVERVGKRTGWLVEIV 1844
Query: 434 NHNV 437
N+NV
Sbjct: 1845 NYNV 1848
Score = 35.8 bits (82), Expect = 0.038
Identities = 29/180 (16%), Positives = 55/180 (30%), Gaps = 61/180 (33%)
Query: 3 IVRKLRSGSTGGVAPSSHEDSSQ--HS-----AL----GVMHLK---KL-FA--EFSHSV 45
L+S G+ P D++ HS AL VM ++ ++ F
Sbjct: 1743 AFEDLKSK---GLIP---ADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVA 1796
Query: 46 NHLSEKEKDDKLYNMLPLFCKVFGNSNSADMTDKFRDVHQFCDHVSRLMVTKVCQRASNQ 105
+ E Y M+ + N + F + V +R +
Sbjct: 1797 --VPRDELGRSNYGMIAI--------NPGRV------AASFSQEA----LQYVVERVGKR 1836
Query: 106 STEIASCAIAKFLEI--ENSEES---SSG-----WMLLSTLNLLAAGDVSLVEVMTKASL 155
+ +EI N E ++G + + LN + + ++E+ SL
Sbjct: 1837 TGW--------LVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 32.7 bits (74), Expect = 0.32
Identities = 43/264 (16%), Positives = 74/264 (28%), Gaps = 116/264 (43%)
Query: 195 LQKIFVQLLVRLCSHSAPAEELSNKDDLTLLFSAITSLCPPYNVIWRKSAAEILMSLSSQ 254
LQ+ F ++L P E + D+ T + AE
Sbjct: 33 LQEQFNKIL------PEPTEGFAADDEPT-------------------TPAE-------- 59
Query: 255 ALTPKVVQYVHDKGCIALCIENMTRRKGQDLTPLEIVEMFVSVFCFLKDSSEVSQILLKD 314
L K + YV + P ++ + +V + L +
Sbjct: 60 -LVGKFLGYVSSL-----------------VEPSKVGQF-----------DQVLNLCLTE 90
Query: 315 FKEAHGYTFLKN-----FLINLENDRSS---EAQEAIRNLILMIATLSMCGYVELRP--- 363
F+ +L+ L + + + +E I+N I RP
Sbjct: 91 FEN----CYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAK-------RPFDK 139
Query: 364 -------NAASMGC--IFQILGFCMPQPSGRGK----FK-LRSL---------DGRKKND 400
A G + I G G+G F+ LR L D K +
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFG-------GQGNTDDYFEELRDLYQTYHVLVGDLIKFSA 192
Query: 401 SELEGLLAVNRLCHKLLSKLLGLD 424
L L+ K+ ++ GL+
Sbjct: 193 ETLSELIRTTLDAEKVFTQ--GLN 214
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.8 bits (74), Expect = 0.15
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 26/75 (34%)
Query: 168 DLPQMNEEEANITDVNSDFTPRERRILLQKIFVQLLVRLCSHSAPAEELS---NKDDLTL 224
+ +E + +D + P R V ELS K L
Sbjct: 123 NYSSEVKENSVDSDDKAKVPPLIR-------IV-----------SGLELSDTKQKGKKFL 164
Query: 225 LFSAITSLCPPYNVI 239
+ + P+ I
Sbjct: 165 VIAY-----EPFENI 174
>1a0i_A DNA ligase; DNA replication; HET: DNA ATP; 2.60A {Enterobacteria
phage T7} SCOP: b.40.4.6 d.142.2.1
Length = 348
Score = 30.4 bits (68), Expect = 1.2
Identities = 6/65 (9%), Positives = 22/65 (33%)
Query: 164 YLFFDLPQMNEEEANITDVNSDFTPRERRILLQKIFVQLLVRLCSHSAPAEELSNKDDLT 223
+ + ++ E+ +E + + + + +A + E+ + +L
Sbjct: 145 IKLYAILPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAAESYEVYDMVELQ 204
Query: 224 LLFSA 228
L+
Sbjct: 205 QLYEQ 209
>3i4z_A Tryptophan dimethylallyltransferase; prenyl transferase, PT barrel,
alkaloid metabolism; 1.76A {Aspergillus fumigatus} PDB:
3i4x_A
Length = 465
Score = 28.9 bits (64), Expect = 4.4
Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 33/150 (22%)
Query: 341 EAIRNL-----ILMIATLSMCGYVELRPNAASMGCIFQILGF-CMPQPSGRGKFKLR--- 391
++R L ++ + Y+ R + ++ + R K L
Sbjct: 215 GSVRRLAVREPRILPPLNMLEEYIRSRGSKSTASPRL--VSCDLTSPAKSRIKIYLLEQM 272
Query: 392 ----------SLDGRKKNDSELEGLLAVNRLCHKLLSKLLGLDDYDAMLHEANHNVLAPY 441
+L GR+++ S LEGL V L L+ GL Y A P
Sbjct: 273 VSLEAMEDLWTLGGRRRDASTLEGLSLVRELWD-LIQLSPGLKSYPAPYLPLGVI---PD 328
Query: 442 GRITLHIFWELNYD--------FLPNYCYN 463
R+ L + L+ + + + N
Sbjct: 329 ERLPLMANFTLHQNDPVPEPQVYFTTFGMN 358
>4dw1_A P2X purinoceptor; ION channel, transport protein; HET: NAG BMA MAN
ATP; 2.80A {Danio rerio} PDB: 3h9v_A* 3i5d_A* 4dw0_A*
Length = 340
Score = 28.1 bits (62), Expect = 7.3
Identities = 8/36 (22%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 429 MLHEANHNV--LAPYGR-ITLHIFWELNYDFLPNYC 461
++ EA + +A G + + I W+ + D ++C
Sbjct: 213 IVGEAEEDFQIMAVRGGVMGVQIRWDCDLDMPQSWC 248
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.394
Gapped
Lambda K H
0.267 0.0524 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,675,843
Number of extensions: 381196
Number of successful extensions: 705
Number of sequences better than 10.0: 1
Number of HSP's gapped: 694
Number of HSP's successfully gapped: 18
Length of query: 467
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 370
Effective length of database: 3,993,456
Effective search space: 1477578720
Effective search space used: 1477578720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.0 bits)