RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy7103
         (467 letters)



>d3ci0k3 d.24.1.6 (K:29-93,K:275-315) Pseudopilin GspK {Escherichia
           coli [TaxId: 562]}
          Length = 106

 Score = 27.2 bits (60), Expect = 1.6
 Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 10/48 (20%)

Query: 385 RGKFKLRSLDGRKKNDSELEGLLAVNRLCHKLLSKLLGLDDYDAMLHE 432
           +  +     D         E  L +N L        +G   +  + H+
Sbjct: 65  QSNYFWLRSDITVN-----EIELTMNSLI-----VRMGPQHFSVLWHQ 102


>d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast
           (Saccharomyces cerevisiae), pII [TaxId: 4932]}
          Length = 262

 Score = 26.8 bits (59), Expect = 6.1
 Identities = 14/94 (14%), Positives = 32/94 (34%), Gaps = 17/94 (18%)

Query: 34  LKKLFAEFSHSVNHLSEKEKDD--KLYNMLPLFCKVFGNSNSADMTDKFRDVHQFCDHVS 91
           L K    F    ++ +  E+D    L +   LF   FG + +                  
Sbjct: 109 LSKFDKPFVMDTSYPARIEEDPFENLEDTDDLFQNEFGINTTVQE--------------- 153

Query: 92  RLMVTKVCQRASNQSTEIASCAIAKFLEIENSEE 125
           R ++ ++ +    ++  ++ C IA   +    + 
Sbjct: 154 RKLIRRLSELIGARAARLSVCGIAAICQKRGYKT 187


>d1czan2 c.55.1.3 (N:223-465) Mammalian type I hexokinase {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 243

 Score = 26.0 bits (57), Expect = 9.4
 Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 15/85 (17%)

Query: 34  LKKLFAEFSHSVNHLSEKEKDDKLYNMLPLFCKVFGNSNSADMTDKFRDVHQFCDHVSRL 93
             +L      + + +S  EK+ +  +         G   S D                 +
Sbjct: 103 TPELLTRGKFNTSDVSAIEKNKEGLHNAKEILTRLGVEPSDDD---------------CV 147

Query: 94  MVTKVCQRASNQSTEIASCAIAKFL 118
            V  VC   S +S  + +  +   L
Sbjct: 148 SVQHVCTIVSFRSANLVAATLGAIL 172


>d1a0ia2 d.142.2.1 (A:2-240) ATP-dependent DNA ligase, N-terminal
           domain {Bacteriophage T7 [TaxId: 10760]}
          Length = 239

 Score = 26.0 bits (56), Expect = 9.9
 Identities = 6/63 (9%), Positives = 22/63 (34%)

Query: 164 YLFFDLPQMNEEEANITDVNSDFTPRERRILLQKIFVQLLVRLCSHSAPAEELSNKDDLT 223
              + +  ++  E+           +E    +  +  +    +   +A + E+ +  +L 
Sbjct: 145 IKLYAILPLHIVESGEDCDVMTLLMQEHVKNMLPLLQEYFPEIEWQAAESYEVYDMVELQ 204

Query: 224 LLF 226
            L+
Sbjct: 205 QLY 207


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,621,751
Number of extensions: 71588
Number of successful extensions: 165
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 8
Length of query: 467
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 378
Effective length of database: 1,185,626
Effective search space: 448166628
Effective search space used: 448166628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.2 bits)