BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy7107
         (76 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O35690|PHX2B_MOUSE Paired mesoderm homeobox protein 2B OS=Mus musculus GN=Phox2b PE=1
           SV=1
          Length = 314

 Score =  108 bits (269), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/66 (78%), Positives = 58/66 (87%), Gaps = 1/66 (1%)

Query: 10  GGLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDL 69
             +PYK+++ H G L EKRKQRRIRTTFTSAQLKELER F ETHYPDIYTREE+A+KIDL
Sbjct: 79  AAVPYKLFTDHGG-LNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDL 137

Query: 70  TEARVQ 75
           TEARVQ
Sbjct: 138 TEARVQ 143


>sp|Q99453|PHX2B_HUMAN Paired mesoderm homeobox protein 2B OS=Homo sapiens GN=PHOX2B PE=1
           SV=2
          Length = 314

 Score =  108 bits (269), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 52/66 (78%), Positives = 58/66 (87%), Gaps = 1/66 (1%)

Query: 10  GGLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDL 69
             +PYK+++ H G L EKRKQRRIRTTFTSAQLKELER F ETHYPDIYTREE+A+KIDL
Sbjct: 79  AAVPYKLFTDHGG-LNEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDL 137

Query: 70  TEARVQ 75
           TEARVQ
Sbjct: 138 TEARVQ 143


>sp|Q62066|PHX2A_MOUSE Paired mesoderm homeobox protein 2A OS=Mus musculus GN=Phox2a PE=2
           SV=1
          Length = 280

 Score =  105 bits (261), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 51/65 (78%), Positives = 55/65 (84%), Gaps = 1/65 (1%)

Query: 11  GLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLT 70
            +PYK +    G L EKRKQRRIRTTFTSAQLKELER F ETHYPDIYTREE+A+KIDLT
Sbjct: 72  AVPYKFFPEPSG-LHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLT 130

Query: 71  EARVQ 75
           EARVQ
Sbjct: 131 EARVQ 135


>sp|Q62782|PHX2A_RAT Paired mesoderm homeobox protein 2A OS=Rattus norvegicus GN=Phox2a
           PE=2 SV=1
          Length = 281

 Score =  104 bits (259), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/65 (78%), Positives = 55/65 (84%), Gaps = 1/65 (1%)

Query: 11  GLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLT 70
            +PYK +    G L EKRKQRRIRTTFTSAQLKELER F ETHYPDIYTREE+A+KIDLT
Sbjct: 72  AVPYKFFPEPSG-LHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLT 130

Query: 71  EARVQ 75
           EARVQ
Sbjct: 131 EARVQ 135


>sp|O14813|PHX2A_HUMAN Paired mesoderm homeobox protein 2A OS=Homo sapiens GN=PHOX2A PE=1
           SV=2
          Length = 284

 Score =  104 bits (259), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 51/65 (78%), Positives = 55/65 (84%), Gaps = 1/65 (1%)

Query: 11  GLPYKVYSGHEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLT 70
            +PYK +    G L EKRKQRRIRTTFTSAQLKELER F ETHYPDIYTREE+A+KIDLT
Sbjct: 72  AVPYKFFPEPSG-LHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLT 130

Query: 71  EARVQ 75
           EARVQ
Sbjct: 131 EARVQ 135


>sp|Q26602|SMOX3_SCHMA Homeobox protein SMOX-3 (Fragment) OS=Schistosoma mansoni
          GN=SMOX-3 PE=2 SV=1
          Length = 288

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/49 (89%), Positives = 48/49 (97%)

Query: 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
          KRKQRRIRTTFTS QLKELERAFQETHYPDIYTRE++A++IDLTEARVQ
Sbjct: 1  KRKQRRIRTTFTSLQLKELERAFQETHYPDIYTREDLALRIDLTEARVQ 49


>sp|Q96QS3|ARX_HUMAN Homeobox protein ARX OS=Homo sapiens GN=ARX PE=1 SV=1
          Length = 562

 Score = 92.0 bits (227), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/55 (78%), Positives = 51/55 (92%), Gaps = 2/55 (3%)

Query: 21  EGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           EG+L  KRKQRR RTTFTS QL+ELERAFQ+THYPD++TREE+AM++DLTEARVQ
Sbjct: 321 EGLL--KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 373


>sp|A6YP92|ARX_RAT Homeobox protein ARX OS=Rattus norvegicus GN=Arx PE=2 SV=1
          Length = 566

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/55 (78%), Positives = 51/55 (92%), Gaps = 2/55 (3%)

Query: 21  EGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           EG+L  KRKQRR RTTFTS QL+ELERAFQ+THYPD++TREE+AM++DLTEARVQ
Sbjct: 325 EGLL--KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 377


>sp|O35085|ARX_MOUSE Homeobox protein ARX OS=Mus musculus GN=Arx PE=2 SV=3
          Length = 564

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 43/55 (78%), Positives = 51/55 (92%), Gaps = 2/55 (3%)

Query: 21  EGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           EG+L  KRKQRR RTTFTS QL+ELERAFQ+THYPD++TREE+AM++DLTEARVQ
Sbjct: 323 EGLL--KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 375


>sp|O42115|ARX_DANRE Aristaless-related homeobox protein OS=Danio rerio GN=arx PE=2 SV=1
          Length = 453

 Score = 89.7 bits (221), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 43/55 (78%), Positives = 51/55 (92%), Gaps = 2/55 (3%)

Query: 21  EGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           EG+L  KRKQRR RTTFTS QL+ELERAFQ+THYPD++TREE+AM++DLTEARVQ
Sbjct: 208 EGML--KRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEARVQ 260


>sp|Q26657|ALX_STRPU Aristaless homeobox protein (Fragment) OS=Strongylocentrotus
           purpuratus GN=ALX PE=2 SV=2
          Length = 327

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 39/49 (79%), Positives = 46/49 (93%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           KRKQRR RTTFTS QL+ELERAF +THYPD++TREE+AM++DLTEARVQ
Sbjct: 209 KRKQRRYRTTFTSYQLEELERAFCKTHYPDVFTREELAMRVDLTEARVQ 257


>sp|Q06453|AL_DROME Homeobox protein aristaless OS=Drosophila melanogaster GN=al PE=1
           SV=2
          Length = 408

 Score = 85.5 bits (210), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 38/49 (77%), Positives = 44/49 (89%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           KRKQRR RTTFTS QL+ELE+AF  THYPD++TREE+AMKI LTEAR+Q
Sbjct: 82  KRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 130


>sp|P23759|PAX7_HUMAN Paired box protein Pax-7 OS=Homo sapiens GN=PAX7 PE=2 SV=3
          Length = 520

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/49 (75%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           KRKQRR RTTFT+ QL+ELE+AF+ THYPDIYTREE+A +  LTEARVQ
Sbjct: 214 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQ 262


>sp|Q0IH87|PAX3B_XENLA Paired box protein Pax-3-B OS=Xenopus laevis GN=pax3-b PE=2 SV=2
          Length = 483

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/49 (77%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           KRKQRR RTTFT+ QL+ELERAF+ THYPDIYTREE+A +  LTEARVQ
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264


>sp|P06601|PRD_DROME Segmentation protein paired OS=Drosophila melanogaster GN=prd PE=1
           SV=1
          Length = 613

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/49 (71%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           KRKQRR RTTF+++QL ELERAF+ T YPDIYTREE+A + +LTEAR+Q
Sbjct: 210 KRKQRRCRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 258


>sp|Q645N4|PAX3A_XENLA Paired box protein Pax-3-A OS=Xenopus laevis GN=pax3-a PE=2 SV=1
          Length = 484

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/49 (77%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           KRKQRR RTTFT+ QL+ELERAF+ THYPDIYTREE+A +  LTEARVQ
Sbjct: 217 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 265


>sp|P24610|PAX3_MOUSE Paired box protein Pax-3 OS=Mus musculus GN=Pax3 PE=1 SV=2
          Length = 479

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/49 (77%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           KRKQRR RTTFT+ QL+ELERAF+ THYPDIYTREE+A +  LTEARVQ
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264


>sp|P23760|PAX3_HUMAN Paired box protein Pax-3 OS=Homo sapiens GN=PAX3 PE=1 SV=2
          Length = 479

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/49 (77%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           KRKQRR RTTFT+ QL+ELERAF+ THYPDIYTREE+A +  LTEARVQ
Sbjct: 216 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 264


>sp|Q28DP6|PAX3_XENTR Paired box protein Pax-3 OS=Xenopus tropicalis GN=pax3 PE=2 SV=2
          Length = 461

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/49 (77%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           KRKQRR RTTFT+ QL+ELERAF+ THYPDIYTREE+A +  LTEARVQ
Sbjct: 193 KRKQRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQ 241


>sp|P47239|PAX7_MOUSE Paired box protein Pax-7 OS=Mus musculus GN=Pax7 PE=2 SV=2
          Length = 503

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 37/49 (75%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           KRKQRR RTTFT+ QL+ELE+AF+ THYPDIYTREE+A +  LTEARVQ
Sbjct: 212 KRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTEARVQ 260


>sp|Q4LAL6|ALX4_BOVIN Homeobox protein aristaless-like 4 OS=Bos taurus GN=ALX4 PE=2 SV=1
          Length = 397

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 44/51 (86%)

Query: 25  TEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           + K K+RR RTTFTS QL+ELE+ FQ+THYPD+Y RE++AM+ DLTEARVQ
Sbjct: 195 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 245


>sp|O35137|ALX4_MOUSE Homeobox protein aristaless-like 4 OS=Mus musculus GN=Alx4 PE=1
           SV=1
          Length = 399

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 44/51 (86%)

Query: 25  TEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           + K K+RR RTTFTS QL+ELE+ FQ+THYPD+Y RE++AM+ DLTEARVQ
Sbjct: 197 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 247


>sp|Q9H161|ALX4_HUMAN Homeobox protein aristaless-like 4 OS=Homo sapiens GN=ALX4 PE=1
           SV=2
          Length = 411

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/51 (68%), Positives = 44/51 (86%)

Query: 25  TEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           + K K+RR RTTFTS QL+ELE+ FQ+THYPD+Y RE++AM+ DLTEARVQ
Sbjct: 209 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 259


>sp|Q9W2Q1|RX_DROME Retinal homeobox protein Rx OS=Drosophila melanogaster GN=Rx PE=2
           SV=2
          Length = 873

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/49 (67%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMK++L E RVQ
Sbjct: 525 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 573


>sp|Q9PVX0|RX2_CHICK Retinal homeobox protein Rx2 OS=Gallus gallus GN=RX2 PE=2 SV=1
          Length = 317

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/49 (67%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMK++L E RVQ
Sbjct: 119 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 167


>sp|O42356|RX1_DANRE Retinal homeobox protein Rx1 OS=Danio rerio GN=rx1 PE=2 SV=2
          Length = 330

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 33/49 (67%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMK++L E RVQ
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 182


>sp|O42357|RX2_DANRE Retinal homeobox protein Rx2 OS=Danio rerio GN=rx2 PE=2 SV=1
          Length = 327

 Score = 79.7 bits (195), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/49 (67%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMK++L E RVQ
Sbjct: 132 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 180


>sp|Q9I9D5|RX1_ASTFA Retinal homeobox protein Rx1 OS=Astyanax fasciatus GN=rx1 PE=2 SV=1
          Length = 334

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/49 (67%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMK++L E RVQ
Sbjct: 139 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 187


>sp|O70137|ALX3_MOUSE Homeobox protein aristaless-like 3 OS=Mus musculus GN=Alx3 PE=2
           SV=1
          Length = 343

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           K K+RR RTTF++ QL+ELE+ FQ+THYPD+Y RE++A++ DLTEARVQ
Sbjct: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQ 198


>sp|O95076|ALX3_HUMAN Homeobox protein aristaless-like 3 OS=Homo sapiens GN=ALX3 PE=1
           SV=2
          Length = 343

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           K K+RR RTTF++ QL+ELE+ FQ+THYPD+Y RE++A++ DLTEARVQ
Sbjct: 150 KSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQ 198


>sp|O42567|RXB_XENLA Retinal homeobox protein Rx-B OS=Xenopus laevis GN=rax-b PE=2 SV=2
          Length = 325

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/49 (67%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMK++L E RVQ
Sbjct: 127 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 175


>sp|O42201|RXA_XENLA Retinal homeobox protein Rx-A OS=Xenopus laevis GN=rax-a PE=2 SV=2
          Length = 322

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/49 (67%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMK++L E RVQ
Sbjct: 127 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 175


>sp|A6NNA5|DRGX_HUMAN Dorsal root ganglia homeobox protein OS=Homo sapiens GN=DRGX PE=2
          SV=1
          Length = 263

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/49 (71%), Positives = 42/49 (85%)

Query: 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
          +RKQRR RTTFT  QL+ LE  F +THYPD++TREE+AMKI+LTEARVQ
Sbjct: 30 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQ 78


>sp|Q8BYH0|DRGX_MOUSE Dorsal root ganglia homeobox protein OS=Mus musculus GN=Drgx PE=1
          SV=2
          Length = 263

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/49 (71%), Positives = 42/49 (85%)

Query: 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
          +RKQRR RTTFT  QL+ LE  F +THYPD++TREE+AMKI+LTEARVQ
Sbjct: 30 RRKQRRNRTTFTLQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQ 78


>sp|Q9Y2V3|RX_HUMAN Retinal homeobox protein Rx OS=Homo sapiens GN=RAX PE=1 SV=2
          Length = 346

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 39/69 (56%), Positives = 51/69 (73%), Gaps = 5/69 (7%)

Query: 11  GLPYKVYSGHEGVLTE----KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMK 66
           GLP    +G E  L+E    K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+A K
Sbjct: 114 GLPVGPATG-EAKLSEEEQPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGK 172

Query: 67  IDLTEARVQ 75
           ++L E RVQ
Sbjct: 173 VNLPEVRVQ 181


>sp|Q9I9A2|RX2_ORYLA Retinal homeobox protein Rx2 OS=Oryzias latipes GN=rx2 PE=2 SV=1
          Length = 327

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 42/49 (85%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+A K++L E RVQ
Sbjct: 134 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELATKVNLPEVRVQ 182


>sp|Q9JLT7|RX_RAT Retinal homeobox protein Rx OS=Rattus norvegicus GN=Rax PE=2 SV=1
          Length = 342

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 4/69 (5%)

Query: 11  GLPYKVYSGHEGVLTE----KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMK 66
           GLP    +G   +  E    K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+A K
Sbjct: 114 GLPVGPAAGDSKLSEEEEPPKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGK 173

Query: 67  IDLTEARVQ 75
           ++L E RVQ
Sbjct: 174 VNLPEVRVQ 182


>sp|Q9PVY0|RX1_CHICK Retinal homeobox protein Rx1 OS=Gallus gallus GN=RX1 PE=2 SV=1
          Length = 228

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 33/49 (67%), Positives = 43/49 (87%)

Query: 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
          K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMK++L E RVQ
Sbjct: 33 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQ 81


>sp|O97039|RX_DUGJA Retinal homeobox protein Rax (Fragment) OS=Dugesia japonica GN=RAX
           PE=2 SV=1
          Length = 268

 Score = 77.0 bits (188), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 33/48 (68%), Positives = 41/48 (85%)

Query: 28  RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           +K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+AMKI L E RVQ
Sbjct: 85  KKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKISLPEVRVQ 132


>sp|P09083|GSBN_DROME Protein gooseberry-neuro OS=Drosophila melanogaster GN=gsb-n PE=1
           SV=2
          Length = 449

 Score = 77.0 bits (188), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 34/49 (69%), Positives = 39/49 (79%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           KRKQRR RTTFT+ QL+ LERAF  T YPD+YTREE+A    LTEAR+Q
Sbjct: 179 KRKQRRSRTTFTAEQLEALERAFSRTQYPDVYTREELAQTTALTEARIQ 227


>sp|P56672|OTP_DROME Homeobox protein orthopedia OS=Drosophila melanogaster GN=otp PE=2
           SV=2
          Length = 409

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/50 (66%), Positives = 41/50 (82%)

Query: 26  EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           +++ Q+R RT FT AQL ELER F +THYPDI+ REEIAM+I LTE+RVQ
Sbjct: 105 QQQDQKRHRTRFTPAQLNELERCFSKTHYPDIFMREEIAMRIGLTESRVQ 154


>sp|Q62798|DRGX_RAT Dorsal root ganglia homeobox protein OS=Rattus norvegicus GN=Drgx
          PE=2 SV=1
          Length = 263

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 34/49 (69%), Positives = 41/49 (83%)

Query: 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
          +RKQRR RTTF   QL+ LE  F +THYPD++TREE+AMKI+LTEARVQ
Sbjct: 30 RRKQRRNRTTFALQQLEALEAVFAQTHYPDVFTREELAMKINLTEARVQ 78


>sp|Q90277|VSX1_CARAU Visual system homeobox 1 OS=Carassius auratus GN=vsx1 PE=1 SV=1
          Length = 341

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 33/56 (58%), Positives = 44/56 (78%)

Query: 20  HEGVLTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           ++G  ++KRK+RR RT FTS QL+ELE+AF E HYPD+Y RE +AMK +L E R+Q
Sbjct: 138 NDGKNSQKRKKRRHRTVFTSHQLEELEKAFHEAHYPDVYAREMLAMKTELPEDRIQ 193


>sp|O35602|RX_MOUSE Retinal homeobox protein Rx OS=Mus musculus GN=Rax PE=2 SV=2
          Length = 342

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 42/49 (85%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+A K++L E RVQ
Sbjct: 133 KKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAGKVNLPEVRVQ 181


>sp|O42358|RX3_DANRE Retinal homeobox protein Rx3 OS=Danio rerio GN=rx3 PE=2 SV=1
          Length = 292

 Score = 75.5 bits (184), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 32/49 (65%), Positives = 43/49 (87%)

Query: 27  KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           K+K RR RTTFT+ QL ELERAF+++HYPD+Y+REE+A+K++L E RVQ
Sbjct: 103 KKKHRRNRTTFTTFQLHELERAFEKSHYPDVYSREELALKVNLPEVRVQ 151


>sp|Q7YTC2|OTP_SACKO Homeobox protein orthopedia OS=Saccoglossus kowalevskii GN=otp PE=2
           SV=1
          Length = 322

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 39/47 (82%)

Query: 29  KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           KQ+R RT FT AQL ELER F +THYPDI+ REEIAM++ LTE+RVQ
Sbjct: 89  KQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQ 135


>sp|O76971|OTP_PARLI Homeobox protein orthopedia OS=Paracentrotus lividus GN=OTP PE=2
           SV=1
          Length = 364

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 39/47 (82%)

Query: 29  KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           KQ+R RT FT AQL ELER F +THYPDI+ REEIAM++ LTE+RVQ
Sbjct: 115 KQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQ 161


>sp|Q6SZ65|OTP_LYTVA Homeobox protein orthopedia OS=Lytechinus variegatus GN=Otp PE=2
           SV=1
          Length = 360

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 39/47 (82%)

Query: 29  KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           KQ+R RT FT AQL ELER F +THYPDI+ REEIAM++ LTE+RVQ
Sbjct: 111 KQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQ 157


>sp|Q6SR68|OTP_HELTB Homeobox protein orthopedia OS=Heliocidaris tuberculata GN=Otp PE=2
           SV=1
          Length = 363

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 39/47 (82%)

Query: 29  KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           KQ+R RT FT AQL ELER F +THYPDI+ REEIAM++ LTE+RVQ
Sbjct: 113 KQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQ 159


>sp|Q6SR69|OTP_HELER Homeobox protein orthopedia OS=Heliocidaris erythrogramma GN=Otp
           PE=2 SV=1
          Length = 363

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/47 (70%), Positives = 39/47 (82%)

Query: 29  KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
           KQ+R RT FT AQL ELER F +THYPDI+ REEIAM++ LTE+RVQ
Sbjct: 113 KQKRHRTRFTPAQLNELERNFAKTHYPDIFMREEIAMRVGLTESRVQ 159


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.135    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,484,275
Number of Sequences: 539616
Number of extensions: 769709
Number of successful extensions: 3348
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 813
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2515
Number of HSP's gapped (non-prelim): 844
length of query: 76
length of database: 191,569,459
effective HSP length: 47
effective length of query: 29
effective length of database: 166,207,507
effective search space: 4820017703
effective search space used: 4820017703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)