Query psy7107
Match_columns 76
No_of_seqs 118 out of 1108
Neff 8.6
Searched_HMMs 29240
Date Fri Aug 16 18:21:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7107.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7107hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kt0_A Nanog, homeobox protein 99.5 5.3E-14 1.8E-18 76.0 8.2 51 25-75 17-67 (84)
2 1wh5_A ZF-HD homeobox family p 99.5 4.4E-14 1.5E-18 75.9 7.6 49 27-75 14-66 (80)
3 2dmt_A Homeobox protein BARH-l 99.5 4.2E-14 1.4E-18 75.9 7.1 50 26-75 13-62 (80)
4 1wh7_A ZF-HD homeobox family p 99.5 6.7E-14 2.3E-18 75.3 6.7 48 27-75 14-66 (80)
5 2cra_A Homeobox protein HOX-B1 99.5 9.2E-14 3.1E-18 72.8 6.2 49 27-75 4-52 (70)
6 2da3_A Alpha-fetoprotein enhan 99.5 7.2E-14 2.4E-18 74.8 5.6 50 26-75 13-62 (80)
7 1nk2_P Homeobox protein VND; h 99.5 1.6E-13 5.4E-18 73.1 6.5 50 26-75 5-54 (77)
8 2djn_A Homeobox protein DLX-5; 99.5 1.4E-13 4.8E-18 72.1 6.0 49 27-75 4-52 (70)
9 2da2_A Alpha-fetoprotein enhan 99.5 1.7E-13 5.7E-18 71.7 6.3 49 27-75 4-52 (70)
10 3a01_A Homeodomain-containing 99.5 2.4E-13 8.3E-18 74.8 7.1 52 24-75 11-62 (93)
11 1puf_A HOX-1.7, homeobox prote 99.5 2.2E-13 7.5E-18 72.6 6.7 50 26-75 9-58 (77)
12 2dmu_A Homeobox protein goosec 99.5 1.5E-13 5.2E-18 71.9 6.0 48 28-75 5-52 (70)
13 2dms_A Homeobox protein OTX2; 99.4 2.8E-13 9.5E-18 72.6 6.3 49 27-75 4-52 (80)
14 1akh_A Protein (mating-type pr 99.4 7.7E-14 2.6E-18 71.2 3.8 50 27-76 2-51 (61)
15 2vi6_A Homeobox protein nanog; 99.4 1.4E-13 4.7E-18 70.5 4.7 47 29-75 2-48 (62)
16 2h1k_A IPF-1, pancreatic and d 99.4 1.8E-13 6E-18 70.4 5.1 46 30-75 3-48 (63)
17 2hdd_A Protein (engrailed home 99.4 1.6E-13 5.4E-18 70.1 4.8 46 30-75 3-48 (61)
18 2da1_A Alpha-fetoprotein enhan 99.4 1.5E-13 5E-18 71.9 4.8 49 27-75 4-52 (70)
19 2cue_A Paired box protein PAX6 99.4 3.1E-13 1.1E-17 72.4 6.2 48 28-75 5-52 (80)
20 1bw5_A ISL-1HD, insulin gene e 99.4 2.3E-13 7.9E-18 70.5 5.5 47 29-75 2-48 (66)
21 2m0c_A Homeobox protein arista 99.4 3.5E-13 1.2E-17 71.2 6.1 49 27-75 6-54 (75)
22 1ig7_A Homeotic protein MSX-1; 99.4 2.9E-13 1E-17 68.4 5.6 45 31-75 1-45 (58)
23 1wi3_A DNA-binding protein SAT 99.4 4E-13 1.4E-17 70.0 5.8 49 27-75 4-53 (71)
24 2l7z_A Homeobox protein HOX-A1 99.4 3.9E-13 1.3E-17 71.0 5.9 49 27-75 4-52 (73)
25 2dmq_A LIM/homeobox protein LH 99.4 4.4E-13 1.5E-17 71.7 6.2 48 28-75 5-52 (80)
26 2e1o_A Homeobox protein PRH; D 99.4 5.7E-13 2E-17 69.7 6.2 47 29-75 6-52 (70)
27 1zq3_P PRD-4, homeotic bicoid 99.4 4.3E-13 1.5E-17 69.9 5.3 46 30-75 2-47 (68)
28 1fjl_A Paired protein; DNA-bin 99.4 4.6E-13 1.6E-17 71.9 5.5 50 26-75 14-63 (81)
29 1jgg_A Segmentation protein EV 99.4 4.4E-13 1.5E-17 68.2 5.1 45 31-75 2-46 (60)
30 3rkq_A Homeobox protein NKX-2. 99.4 5.6E-13 1.9E-17 67.2 5.3 46 30-75 2-47 (58)
31 1ftt_A TTF-1 HD, thyroid trans 99.4 6.8E-13 2.3E-17 69.1 5.4 46 30-75 2-47 (68)
32 2r5y_A Homeotic protein sex co 99.4 6.6E-13 2.3E-17 72.3 5.2 50 26-75 24-73 (88)
33 1ahd_P Antennapedia protein mu 99.4 4.5E-13 1.5E-17 69.8 4.3 46 30-75 2-47 (68)
34 1b8i_A Ultrabithorax, protein 99.4 1.1E-12 3.7E-17 70.5 5.6 48 28-75 18-65 (81)
35 3nar_A ZHX1, zinc fingers and 99.4 9.6E-13 3.3E-17 72.7 5.2 49 27-75 22-70 (96)
36 1yz8_P Pituitary homeobox 2; D 99.4 3.4E-13 1.2E-17 70.2 3.1 47 29-75 2-48 (68)
37 2k40_A Homeobox expressed in E 99.4 1.4E-12 4.6E-17 67.7 5.2 45 31-75 2-46 (67)
38 2da4_A Hypothetical protein DK 99.4 5.1E-13 1.8E-17 71.5 3.7 49 27-75 5-57 (80)
39 2ecc_A Homeobox and leucine zi 99.3 1.6E-12 5.5E-17 69.2 4.9 44 33-76 6-49 (76)
40 1b72_A Protein (homeobox prote 99.3 1.8E-12 6.2E-17 71.7 4.9 48 28-75 32-79 (97)
41 2ly9_A Zinc fingers and homeob 99.3 4.2E-12 1.4E-16 67.0 5.8 46 30-75 6-51 (74)
42 2dn0_A Zinc fingers and homeob 99.3 4.1E-12 1.4E-16 67.4 5.4 46 30-75 8-53 (76)
43 1x2n_A Homeobox protein pknox1 99.3 4.5E-12 1.5E-16 66.7 5.4 50 27-76 4-56 (73)
44 3a02_A Homeobox protein arista 99.3 3E-12 1E-16 65.1 4.5 43 33-75 2-44 (60)
45 2hi3_A Homeodomain-only protei 99.3 5.6E-12 1.9E-16 66.4 5.4 45 31-75 3-48 (73)
46 1uhs_A HOP, homeodomain only p 99.3 7E-12 2.4E-16 65.8 5.2 45 31-75 2-47 (72)
47 2cuf_A FLJ21616 protein; homeo 99.3 5E-12 1.7E-16 69.7 4.6 50 27-76 4-68 (95)
48 2da5_A Zinc fingers and homeob 99.3 1.3E-11 4.3E-16 65.4 6.0 44 32-75 9-52 (75)
49 1du6_A PBX1, homeobox protein 99.3 6.3E-12 2.2E-16 64.6 4.1 47 30-76 3-52 (64)
50 3a03_A T-cell leukemia homeobo 99.3 8.6E-12 2.9E-16 62.6 4.5 41 35-75 2-42 (56)
51 1puf_B PRE-B-cell leukemia tra 99.2 1.1E-11 3.6E-16 65.3 4.7 46 31-76 2-50 (73)
52 1lfb_A Liver transcription fac 99.2 9.4E-12 3.2E-16 69.2 4.7 50 26-75 5-75 (99)
53 1e3o_C Octamer-binding transcr 99.2 9.9E-12 3.4E-16 74.2 5.0 49 27-75 98-146 (160)
54 1au7_A Protein PIT-1, GHF-1; c 99.2 1.3E-11 4.5E-16 72.7 5.2 50 26-75 83-132 (146)
55 2da6_A Hepatocyte nuclear fact 99.2 2E-11 7E-16 68.1 5.2 50 27-76 3-73 (102)
56 1mnm_C Protein (MAT alpha-2 tr 99.2 1.9E-11 6.4E-16 66.4 4.8 50 27-76 24-76 (87)
57 3d1n_I POU domain, class 6, tr 99.2 2.7E-11 9.3E-16 71.6 5.9 49 27-75 90-138 (151)
58 2xsd_C POU domain, class 3, tr 99.2 1.4E-11 4.6E-16 73.9 4.6 49 27-75 96-144 (164)
59 2d5v_A Hepatocyte nuclear fact 99.2 1.4E-11 4.9E-16 73.5 4.4 51 26-76 93-143 (164)
60 2dmn_A Homeobox protein TGIF2L 99.2 3.9E-11 1.3E-15 64.7 5.5 49 28-76 5-56 (83)
61 2ecb_A Zinc fingers and homeob 99.2 8.4E-11 2.9E-15 64.2 6.8 40 36-75 17-56 (89)
62 1b72_B Protein (PBX1); homeodo 99.2 2.3E-11 7.9E-16 65.9 4.5 46 31-76 2-50 (87)
63 1k61_A Mating-type protein alp 99.2 2.9E-11 9.9E-16 61.3 4.6 44 33-76 1-47 (60)
64 3l1p_A POU domain, class 5, tr 99.1 5.7E-11 2E-15 70.6 4.8 48 28-75 94-141 (155)
65 1le8_B Mating-type protein alp 99.1 7.2E-11 2.5E-15 63.6 4.5 45 32-76 4-51 (83)
66 2dmp_A Zinc fingers and homeob 99.1 3.1E-10 1.1E-14 61.8 6.6 40 36-75 19-58 (89)
67 1ic8_A Hepatocyte nuclear fact 99.1 3.3E-11 1.1E-15 74.0 2.1 51 26-76 111-182 (194)
68 2cqx_A LAG1 longevity assuranc 99.1 1E-10 3.4E-15 61.6 3.4 45 31-75 9-54 (72)
69 3nau_A Zinc fingers and homeob 99.1 2E-10 6.8E-15 59.5 4.2 39 38-76 12-50 (66)
70 2h8r_A Hepatocyte nuclear fact 99.1 1.4E-10 4.8E-15 72.3 4.1 45 24-68 136-180 (221)
71 2e19_A Transcription factor 8; 99.0 7.5E-10 2.6E-14 57.0 4.8 41 35-75 8-48 (64)
72 2l9r_A Homeobox protein NKX-3. 99.0 9.1E-10 3.1E-14 57.5 4.9 42 34-75 8-49 (69)
73 1x2m_A LAG1 longevity assuranc 98.8 4.3E-09 1.5E-13 54.2 3.7 37 39-75 9-46 (64)
74 3k2a_A Homeobox protein MEIS2; 98.8 8E-09 2.7E-13 53.5 3.9 41 36-76 4-47 (67)
75 1mh3_A Maltose binding-A1 home 98.5 1E-07 3.5E-12 62.5 3.6 46 31-76 366-411 (421)
76 2da7_A Zinc finger homeobox pr 98.3 8.5E-07 2.9E-11 46.2 4.0 37 39-75 14-50 (71)
77 2lk2_A Homeobox protein TGIF1; 98.2 1.4E-06 4.8E-11 47.4 4.0 43 34-76 9-54 (89)
78 2rgt_A Fusion of LIM/homeobox 86.2 0.0045 1.6E-07 36.4 -6.5 30 28-57 134-163 (169)
79 2elh_A CG11849-PA, LD40883P; s 74.1 7.1 0.00024 19.9 4.4 39 31-74 17-55 (87)
80 2ys9_A Homeobox and leucine zi 73.5 2.7 9.4E-05 21.5 2.3 34 43-76 19-52 (70)
81 2glo_A Brinker CG9653-PA; prot 68.3 8 0.00027 18.2 3.5 41 34-75 3-43 (59)
82 1hlv_A CENP-B, major centromer 64.5 13 0.00044 20.0 4.1 39 33-74 4-42 (131)
83 3ulq_B Transcriptional regulat 58.0 8.5 0.00029 19.9 2.4 40 30-75 23-62 (90)
84 1tc3_C Protein (TC3 transposas 56.0 12 0.0004 16.0 3.1 35 36-75 5-39 (51)
85 3i5g_B Myosin regulatory light 48.0 34 0.0012 18.9 5.4 39 33-71 6-49 (153)
86 2o8x_A Probable RNA polymerase 46.7 16 0.00053 17.2 2.2 35 36-75 15-49 (70)
87 3hug_A RNA polymerase sigma fa 45.9 23 0.00077 18.0 2.9 34 37-75 38-71 (92)
88 1ku3_A Sigma factor SIGA; heli 45.3 24 0.00083 17.0 2.9 39 36-75 10-48 (73)
89 2qko_A Possible transcriptiona 43.0 11 0.00037 21.6 1.5 31 42-73 34-64 (215)
90 1p4w_A RCSB; solution structur 41.4 27 0.00093 18.4 2.8 36 34-75 32-67 (99)
91 3i9v_2 NADH-quinone oxidoreduc 40.2 38 0.0013 20.0 3.6 31 44-74 30-60 (181)
92 2p7v_B Sigma-70, RNA polymeras 40.0 27 0.00092 16.5 2.5 38 37-75 6-43 (68)
93 1iuf_A Centromere ABP1 protein 39.7 42 0.0015 18.6 3.6 41 31-74 6-53 (144)
94 2cqq_A RSGI RUH-037, DNAJ homo 39.3 38 0.0013 17.0 3.4 40 34-75 8-49 (72)
95 1fi6_A EH domain protein REPS1 34.6 45 0.0015 16.7 3.0 38 37-74 3-45 (92)
96 1je8_A Nitrate/nitrite respons 34.6 39 0.0013 16.8 2.7 37 33-75 18-54 (82)
97 3mzy_A RNA polymerase sigma-H 33.9 28 0.00094 18.9 2.2 19 57-75 124-142 (164)
98 1tty_A Sigma-A, RNA polymerase 33.4 49 0.0017 16.5 3.0 38 37-75 19-56 (87)
99 2jpc_A SSRB; DNA binding prote 32.7 14 0.00046 17.1 0.6 16 60-75 16-31 (61)
100 3c57_A Two component transcrip 32.2 50 0.0017 16.8 2.9 35 35-75 26-60 (95)
101 3h0d_A CTSR; protein DNA compl 30.9 25 0.00086 20.6 1.7 16 59-74 26-41 (155)
102 1s7o_A Hypothetical UPF0122 pr 30.0 43 0.0015 18.0 2.5 35 36-75 22-56 (113)
103 1rr7_A Middle operon regulator 29.3 14 0.00048 20.7 0.4 17 59-75 94-110 (129)
104 2cqr_A RSGI RUH-043, DNAJ homo 28.4 62 0.0021 16.2 5.1 45 31-75 15-60 (73)
105 2lhi_A Calmodulin, serine/thre 28.4 56 0.0019 18.4 2.9 38 34-71 2-44 (176)
106 1jko_C HIN recombinase, DNA-in 28.3 43 0.0015 14.2 3.1 33 37-74 6-38 (52)
107 2x48_A CAG38821; archeal virus 27.4 45 0.0015 14.8 2.0 32 39-75 18-49 (55)
108 1or7_A Sigma-24, RNA polymeras 26.9 51 0.0018 18.4 2.6 17 59-75 158-174 (194)
109 1xsv_A Hypothetical UPF0122 pr 26.4 78 0.0027 16.8 3.1 34 37-75 26-59 (113)
110 2rnj_A Response regulator prot 25.6 57 0.0019 16.3 2.4 36 34-75 27-62 (91)
111 4h62_V Mediator of RNA polymer 24.8 42 0.0014 13.8 1.3 14 34-47 6-19 (31)
112 1c07_A Protein (epidermal grow 24.7 75 0.0026 15.9 3.0 38 37-74 4-46 (95)
113 1u78_A TC3 transposase, transp 24.0 86 0.0029 16.5 3.1 36 35-75 5-40 (141)
114 1qbj_A Protein (double-strande 23.7 29 0.00099 17.7 1.0 16 60-75 30-45 (81)
115 1rp3_A RNA polymerase sigma fa 23.3 83 0.0028 18.1 3.1 34 37-75 188-221 (239)
116 1qgp_A Protein (double strande 23.1 31 0.0011 17.2 1.0 16 60-75 34-49 (77)
117 3i5g_C Myosin catalytic light 22.9 88 0.003 17.2 3.0 36 36-71 2-44 (159)
118 2jn6_A Protein CGL2762, transp 22.6 85 0.0029 15.7 4.1 37 34-74 3-40 (97)
119 2jt1_A PEFI protein; solution 21.9 41 0.0014 17.0 1.3 20 54-75 23-42 (77)
120 2gqb_A Conserved hypothetical 21.8 64 0.0022 18.3 2.2 17 55-71 81-97 (130)
121 3o48_A Mitochondria fission 1 21.6 1.2E+02 0.0041 17.1 3.9 33 35-67 16-50 (134)
122 1rzs_A Antirepressor, regulato 21.2 45 0.0016 15.6 1.3 15 60-74 13-27 (61)
123 3o9x_A Uncharacterized HTH-typ 20.9 87 0.003 16.7 2.6 15 60-74 87-101 (133)
124 3u0k_A Rcamp; fluorescent prot 20.8 1.5E+02 0.0053 20.1 4.2 38 33-70 292-334 (440)
125 3szt_A QCSR, quorum-sensing co 20.7 1E+02 0.0034 18.4 3.1 35 35-75 174-208 (237)
126 1fad_A Protein (FADD protein); 20.7 42 0.0014 17.4 1.2 18 58-75 26-43 (99)
127 1l3l_A Transcriptional activat 20.6 1.1E+02 0.0037 18.1 3.2 36 34-75 171-206 (234)
128 2q0o_A Probable transcriptiona 20.6 1E+02 0.0034 18.2 3.1 36 34-75 173-208 (236)
129 1x3u_A Transcriptional regulat 20.6 84 0.0029 14.9 2.9 33 37-75 17-49 (79)
130 3ezq_B Protein FADD; apoptosis 20.2 43 0.0015 18.5 1.2 17 58-74 18-34 (122)
131 1fse_A GERE; helix-turn-helix 20.0 83 0.0028 14.6 3.2 36 34-75 9-44 (74)
132 2lr8_A CAsp8-associated protei 24.8 23 0.00079 18.0 0.0 39 37-76 17-55 (70)
No 1
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.54 E-value=5.3e-14 Score=75.98 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=47.4
Q ss_pred ccccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 25 TEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 25 ~~~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
....+.++.||.|+..|+..||..|..++||+...+..||..|||++.+|+
T Consensus 17 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 67 (84)
T 2kt0_A 17 KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK 67 (84)
T ss_dssp CCCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHH
Confidence 345667889999999999999999999999999999999999999999986
No 2
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.54 E-value=4.4e-14 Score=75.94 Aligned_cols=49 Identities=14% Similarity=0.150 Sum_probs=46.2
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhh----cCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQE----THYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~----~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.++++|.||.||.+|+..||..|+. ++||+..++.+||..|+|++.+||
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~Vk 66 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLK 66 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCccccc
Confidence 4567889999999999999999999 999999999999999999999987
No 3
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=4.2e-14 Score=75.87 Aligned_cols=50 Identities=34% Similarity=0.529 Sum_probs=46.9
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 26 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 26 ~~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..++.++.|+.||..|+..||..|..++||+..++.+||..|+|++.+|+
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 62 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVK 62 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHee
Confidence 35667889999999999999999999999999999999999999999997
No 4
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.51 E-value=6.7e-14 Score=75.27 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=44.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQE-----THYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~-----~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..+++|.||.||.+|+..|| .|.. ++||+..++.+||..|+|++.+||
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVk 66 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLK 66 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCccc
Confidence 45678899999999999999 8999 999999999999999999999987
No 5
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=9.2e-14 Score=72.80 Aligned_cols=49 Identities=24% Similarity=0.455 Sum_probs=45.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..+.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 52 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhh
Confidence 3456788999999999999999999999999999999999999999987
No 6
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.48 E-value=7.2e-14 Score=74.75 Aligned_cols=50 Identities=30% Similarity=0.403 Sum_probs=46.8
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 26 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 26 ~~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
...+.++.|+.||.+|+..||..|..++||+..++.+||..|+|++.+|+
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~ 62 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQ 62 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhH
Confidence 34567889999999999999999999999999999999999999999987
No 7
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.47 E-value=1.6e-13 Score=73.10 Aligned_cols=50 Identities=40% Similarity=0.511 Sum_probs=46.5
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 26 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 26 ~~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..++.++.|+.||..|+..||..|..++||+...+.+||..+||++.+|+
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 54 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 34567888999999999999999999999999999999999999999987
No 8
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.4e-13 Score=72.10 Aligned_cols=49 Identities=37% Similarity=0.560 Sum_probs=45.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..+.++.|+.||.+|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVK 52 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 3456788999999999999999999999999999999999999999987
No 9
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=71.72 Aligned_cols=49 Identities=27% Similarity=0.358 Sum_probs=45.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..+.++.|+.||.+|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIV 52 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhH
Confidence 3456789999999999999999999999999999999999999999987
No 10
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.47 E-value=2.4e-13 Score=74.82 Aligned_cols=52 Identities=31% Similarity=0.486 Sum_probs=47.6
Q ss_pred CccccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 24 LTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 24 ~~~~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.....+.++.||.||.+|+..||..|..++||+...+.+||..+||++.+|+
T Consensus 11 ~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 62 (93)
T 3a01_A 11 NRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVK 62 (93)
T ss_dssp TSCCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHH
T ss_pred CCCCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcc
Confidence 3345567889999999999999999999999999999999999999999987
No 11
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.47 E-value=2.2e-13 Score=72.57 Aligned_cols=50 Identities=34% Similarity=0.424 Sum_probs=46.7
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 26 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 26 ~~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..++.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 9 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 58 (77)
T 1puf_A 9 HARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58 (77)
T ss_dssp CCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 34567889999999999999999999999999999999999999999987
No 12
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=1.5e-13 Score=71.93 Aligned_cols=48 Identities=52% Similarity=0.769 Sum_probs=45.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 28 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 28 ~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.+.++.|+.||.+|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVE 52 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHee
Confidence 446788999999999999999999999999999999999999999987
No 13
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.45 E-value=2.8e-13 Score=72.59 Aligned_cols=49 Identities=59% Similarity=0.856 Sum_probs=46.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.++.++.|+.|+.+|+..||..|..++||+..++.+||..++|++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQ 52 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhh
Confidence 3557889999999999999999999999999999999999999999987
No 14
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.44 E-value=7.7e-14 Score=71.21 Aligned_cols=50 Identities=22% Similarity=0.287 Sum_probs=38.7
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
+++.++.|+.|+..|+..|+..|..++||+..++.+||..+||++.||++
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~ 51 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRV 51 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 35677899999999999999999999999999999999999999999973
No 15
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.44 E-value=1.4e-13 Score=70.55 Aligned_cols=47 Identities=28% Similarity=0.506 Sum_probs=40.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 29 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 29 k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
+.++.|+.||..|+..||..|..++||+...+.+||..+||++.+|+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 48 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVK 48 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhh
Confidence 45788999999999999999999999999999999999999999986
No 16
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.44 E-value=1.8e-13 Score=70.38 Aligned_cols=46 Identities=39% Similarity=0.564 Sum_probs=42.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 30 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 30 ~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.++.|+.||..|+..||..|..++||+...+.+||..+||++.+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 48 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIK 48 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhh
Confidence 5788999999999999999999999999999999999999999987
No 17
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.44 E-value=1.6e-13 Score=70.12 Aligned_cols=46 Identities=35% Similarity=0.624 Sum_probs=41.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 30 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 30 ~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 48 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 5788999999999999999999999999999999999999999987
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.44 E-value=1.5e-13 Score=71.95 Aligned_cols=49 Identities=27% Similarity=0.314 Sum_probs=45.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..+.++.|+.||.+|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIK 52 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 3456789999999999999999999999999999999999999999987
No 19
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.44 E-value=3.1e-13 Score=72.44 Aligned_cols=48 Identities=52% Similarity=0.902 Sum_probs=45.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 28 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 28 ~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.+.++.|+.|+.+|+..||..|..++||+..++.+||..|+|++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 52 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhh
Confidence 456789999999999999999999999999999999999999999986
No 20
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.44 E-value=2.3e-13 Score=70.48 Aligned_cols=47 Identities=23% Similarity=0.424 Sum_probs=44.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 29 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 29 k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
++++.|+.||.+|+..||..|..++||+..++..||..+||++.+|+
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 46789999999999999999999999999999999999999999987
No 21
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.44 E-value=3.5e-13 Score=71.20 Aligned_cols=49 Identities=71% Similarity=1.055 Sum_probs=46.0
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.+++++.|+.|+..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 54 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQ 54 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHH
Confidence 4556788999999999999999999999999999999999999999986
No 22
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.44 E-value=2.9e-13 Score=68.40 Aligned_cols=45 Identities=44% Similarity=0.672 Sum_probs=43.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 31 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 31 rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
++.|+.||.+|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 45 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhh
Confidence 468999999999999999999999999999999999999999987
No 23
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.43 E-value=4e-13 Score=69.96 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=46.1
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQE-THYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~-~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.++++|.||.|+.+|+..|+..|+. ++||+...+..||..+||++.+||
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~Iq 53 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 3467899999999999999999999 999999999999999999999886
No 24
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.43 E-value=3.9e-13 Score=70.95 Aligned_cols=49 Identities=31% Similarity=0.470 Sum_probs=45.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..+.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVT 52 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHH
Confidence 3456889999999999999999999999999999999999999999987
No 25
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=4.4e-13 Score=71.71 Aligned_cols=48 Identities=31% Similarity=0.489 Sum_probs=45.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 28 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 28 ~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.+.++.|+.||.+|+..||..|..++||+..++..||..++|++.+|+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 52 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhh
Confidence 456889999999999999999999999999999999999999999987
No 26
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.42 E-value=5.7e-13 Score=69.74 Aligned_cols=47 Identities=26% Similarity=0.400 Sum_probs=44.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 29 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 29 k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
+.++.|+.||.+|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 52 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 52 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhh
Confidence 45678999999999999999999999999999999999999999987
No 27
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.41 E-value=4.3e-13 Score=69.89 Aligned_cols=46 Identities=39% Similarity=0.559 Sum_probs=44.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 30 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 30 ~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
+++.|+.||..|+..||..|..++||+...+..||..+||++.+|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 47 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhh
Confidence 5788999999999999999999999999999999999999999986
No 28
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.41 E-value=4.6e-13 Score=71.89 Aligned_cols=50 Identities=70% Similarity=1.033 Sum_probs=45.4
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 26 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 26 ~~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..++.++.|+.|+..|+..||..|..++||+...+..||..+||++.+|+
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 63 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 63 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHH
Confidence 35667889999999999999999999999999999999999999999987
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.41 E-value=4.4e-13 Score=68.24 Aligned_cols=45 Identities=38% Similarity=0.591 Sum_probs=42.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 31 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 31 rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
++.|+.||.+|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 46 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 46 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHH
Confidence 578999999999999999999999999999999999999999987
No 30
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.40 E-value=5.6e-13 Score=67.17 Aligned_cols=46 Identities=35% Similarity=0.577 Sum_probs=43.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 30 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 30 ~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
+++.|+.|+..|+..|+..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVK 47 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHH
Confidence 4678999999999999999999999999999999999999999987
No 31
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.39 E-value=6.8e-13 Score=69.12 Aligned_cols=46 Identities=39% Similarity=0.580 Sum_probs=44.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 30 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 30 ~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
+++.|+.||..|+..||..|..++||+...+.+||..+||++.+|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 47 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhH
Confidence 4678999999999999999999999999999999999999999986
No 32
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.38 E-value=6.6e-13 Score=72.29 Aligned_cols=50 Identities=34% Similarity=0.463 Sum_probs=42.2
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 26 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 26 ~~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..++.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 24 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 73 (88)
T 2r5y_A 24 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 73 (88)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhh
Confidence 34567889999999999999999999999999999999999999999987
No 33
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.38 E-value=4.5e-13 Score=69.84 Aligned_cols=46 Identities=37% Similarity=0.477 Sum_probs=44.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 30 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 30 ~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
+++.|+.||..|+..||..|..++||+...+.+||..+||++.+|+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 47 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 47 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhh
Confidence 4678999999999999999999999999999999999999999986
No 34
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.37 E-value=1.1e-12 Score=70.53 Aligned_cols=48 Identities=38% Similarity=0.503 Sum_probs=41.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 28 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 28 ~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.+.++.|+.||..|+..||..|..++||+...+.+||..+||++.+|+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 65 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIK 65 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 456788999999999999999999999999999999999999999986
No 35
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.37 E-value=9.6e-13 Score=72.72 Aligned_cols=49 Identities=22% Similarity=0.253 Sum_probs=42.8
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
....++.|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 70 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIV 70 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHee
Confidence 4446678999999999999999999999999999999999999999986
No 36
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.36 E-value=3.4e-13 Score=70.22 Aligned_cols=47 Identities=62% Similarity=0.856 Sum_probs=44.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 29 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 29 k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
+.++.|+.||..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 48 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 48 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHH
Confidence 46788999999999999999999999999999999999999999987
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.36 E-value=1.4e-12 Score=67.73 Aligned_cols=45 Identities=42% Similarity=0.641 Sum_probs=43.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 31 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 31 rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
++.|+.||..|+..||..|..++||+...+..||..+||++.+|+
T Consensus 2 rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 46 (67)
T 2k40_A 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQ 46 (67)
T ss_dssp CCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhh
Confidence 678999999999999999999999999999999999999999987
No 38
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=5.1e-13 Score=71.54 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=46.0
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhc----CCCCHHHHHHHHHHcCCCcchhc
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQET----HYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~~----~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.++.++.||.||.+|+..||..|..+ +||+..++.+||..+||++.+|+
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~ 57 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVR 57 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhh
Confidence 45678899999999999999999999 99999999999999999999997
No 39
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=1.6e-12 Score=69.22 Aligned_cols=44 Identities=14% Similarity=0.136 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 33 IRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 33 ~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
.|+.||.+|+..|+..|..++||+..++.+||..+||++.||++
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkv 49 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQ 49 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 56679999999999999999999999999999999999999973
No 40
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.33 E-value=1.8e-12 Score=71.70 Aligned_cols=48 Identities=38% Similarity=0.547 Sum_probs=42.2
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 28 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 28 ~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.+.++.|+.||..|+..||..|..++||+..++.+||..|||++.+|+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 79 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVK 79 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhH
Confidence 457788999999999999999999999999999999999999999997
No 41
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.32 E-value=4.2e-12 Score=66.98 Aligned_cols=46 Identities=22% Similarity=0.286 Sum_probs=44.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 30 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 30 ~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.++.|+.||.+|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 6 ~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 51 (74)
T 2ly9_A 6 SFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIK 51 (74)
T ss_dssp CCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHee
Confidence 5678999999999999999999999999999999999999999986
No 42
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=4.1e-12 Score=67.43 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=43.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 30 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 30 ~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
+.+.|+.||.+|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~ 53 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVR 53 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhh
Confidence 3446899999999999999999999999999999999999999987
No 43
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.31 E-value=4.5e-12 Score=66.71 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=45.6
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQE---THYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~---~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
.++.++.|+.|+..|+..|+..|.. ++||+..++.+||..+||++.||++
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~ 56 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNN 56 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 3456788999999999999999987 9999999999999999999999973
No 44
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.31 E-value=3e-12 Score=65.08 Aligned_cols=43 Identities=70% Similarity=1.029 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 33 IRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 33 ~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.|+.||.+|+..||..|..++||+...+.+||..+||++.+|+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~ 44 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQ 44 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHH
Confidence 5899999999999999999999999999999999999999986
No 45
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.30 E-value=5.6e-12 Score=66.41 Aligned_cols=45 Identities=31% Similarity=0.271 Sum_probs=42.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 31 RRIRTTFTSAQLKELERAFQE-THYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 31 rr~Rt~~s~~q~~~Le~~F~~-~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.+.|+.||.+|+..||..|.. ++||+...+.+||..+||++.+|+
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~ 48 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 48 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHH
Confidence 467999999999999999995 999999999999999999999987
No 46
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.28 E-value=7e-12 Score=65.84 Aligned_cols=45 Identities=33% Similarity=0.307 Sum_probs=42.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 31 RRIRTTFTSAQLKELERAFQE-THYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 31 rr~Rt~~s~~q~~~Le~~F~~-~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.+.|+.||..|+..||..|.. ++||+...+.+||..+||++.+|+
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~ 47 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQ 47 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhh
Confidence 357899999999999999996 999999999999999999999987
No 47
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.27 E-value=5e-12 Score=69.68 Aligned_cols=50 Identities=34% Similarity=0.435 Sum_probs=46.4
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------CCcchhcC
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKID---------------LTEARVQK 76 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~---------------l~~~qVk~ 76 (76)
.++.++.|+.|+..|+..||..|+.++||+...+.+||..++ |++.+|++
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~ 68 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYN 68 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHH
Confidence 456788999999999999999999999999999999999999 99999863
No 48
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.3e-11 Score=65.43 Aligned_cols=44 Identities=16% Similarity=0.220 Sum_probs=41.3
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 32 RIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 32 r~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
++|+.||.+|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 52 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREID 52 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhh
Confidence 35677999999999999999999999999999999999999987
No 49
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.26 E-value=6.3e-12 Score=64.58 Aligned_cols=47 Identities=21% Similarity=0.268 Sum_probs=44.2
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 30 QRRIRTTFTSAQLKELERAF---QETHYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 30 ~rr~Rt~~s~~q~~~Le~~F---~~~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
.++.|+.|+..|+..|+..| ..++||+..++.+||..+||++.||++
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~ 52 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 52 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 56789999999999999999 999999999999999999999999973
No 50
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.25 E-value=8.6e-12 Score=62.64 Aligned_cols=41 Identities=34% Similarity=0.537 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 35 TTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 35 t~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
|.||.+|+..||..|..++||+...+.+||..+||++.+|+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~ 42 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVK 42 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhh
Confidence 67999999999999999999999999999999999999987
No 51
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.25 E-value=1.1e-11 Score=65.29 Aligned_cols=46 Identities=30% Similarity=0.452 Sum_probs=43.6
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 31 RRIRTTFTSAQLKELERAF---QETHYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 31 rr~Rt~~s~~q~~~Le~~F---~~~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
++.|+.|+..|+..|+..| ..++||+..++..||..+||++.||++
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~ 50 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 6789999999999999999 999999999999999999999999973
No 52
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.24 E-value=9.4e-12 Score=69.23 Aligned_cols=50 Identities=28% Similarity=0.385 Sum_probs=40.8
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH------------------cC---CCcchhc
Q psy7107 26 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMK------------------ID---LTEARVQ 75 (76)
Q Consensus 26 ~~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~------------------l~---l~~~qVk 75 (76)
..++.++.|+.|+..|+..||..|+.++||+...|.+||.. || |++.+|+
T Consensus 5 ~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~ 75 (99)
T 1lfb_A 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVY 75 (99)
T ss_dssp --------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHH
T ss_pred CCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceee
Confidence 35667889999999999999999999999999999999999 88 9999986
No 53
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.24 E-value=9.9e-12 Score=74.16 Aligned_cols=49 Identities=20% Similarity=0.328 Sum_probs=42.2
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..+++|.||.|+..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 146 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 146 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhh
Confidence 3567889999999999999999999999999999999999999999987
No 54
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.23 E-value=1.3e-11 Score=72.73 Aligned_cols=50 Identities=28% Similarity=0.385 Sum_probs=43.0
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 26 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 26 ~~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..+++++.||.|+..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 132 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 132 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhch
Confidence 34567788999999999999999999999999999999999999999987
No 55
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2e-11 Score=68.12 Aligned_cols=50 Identities=24% Similarity=0.269 Sum_probs=45.6
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHc---------------------CCCcchhcC
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKI---------------------DLTEARVQK 76 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l---------------------~l~~~qVk~ 76 (76)
.++.+|.|+.|++.|+..||..|+.++||+..+|++||..+ .+++.+|++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~ 73 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYN 73 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceee
Confidence 35578899999999999999999999999999999999999 788888863
No 56
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.21 E-value=1.9e-11 Score=66.36 Aligned_cols=50 Identities=20% Similarity=0.291 Sum_probs=45.5
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQE---THYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~---~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
..++++.|+.|+.+|+..|+..|.. ++||+..++..||..+||++.||++
T Consensus 24 ~~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~ 76 (87)
T 1mnm_C 24 KSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 76 (87)
T ss_dssp EESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 3445667999999999999999999 9999999999999999999999973
No 57
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.21 E-value=2.7e-11 Score=71.60 Aligned_cols=49 Identities=24% Similarity=0.395 Sum_probs=46.2
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..++++.|+.|+..|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 138 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVR 138 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhH
Confidence 4567889999999999999999999999999999999999999999997
No 58
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.21 E-value=1.4e-11 Score=73.92 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=38.4
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 27 KRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 27 ~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.++++|.||.|+..|+..||..|..++||+...+.+||..++|++.+|+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~ 144 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVR 144 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhh
Confidence 4567889999999999999999999999999999999999999999987
No 59
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.20 E-value=1.4e-11 Score=73.54 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=42.6
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 26 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 26 ~~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
...+++|.|+.|+..|+..|+..|..++||+...+..||..+||++.+|++
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~ 143 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSN 143 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhh
Confidence 345678899999999999999999999999999999999999999999873
No 60
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.20 E-value=3.9e-11 Score=64.69 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=44.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 28 RKQRRIRTTFTSAQLKELERAFQE---THYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 28 ~k~rr~Rt~~s~~q~~~Le~~F~~---~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
.+.++.|+.|+..|+..|+..|.. ++||+..++.+||..+||++.||++
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~ 56 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISN 56 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhH
Confidence 446778999999999999999987 5999999999999999999999973
No 61
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.19 E-value=8.4e-11 Score=64.24 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 36 TFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 36 ~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.||.+|+..||..|..++||+..++.+||..|||++.||+
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVk 56 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 56 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCe
Confidence 7899999999999999999999999999999999999997
No 62
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.19 E-value=2.3e-11 Score=65.87 Aligned_cols=46 Identities=30% Similarity=0.452 Sum_probs=43.0
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 31 RRIRTTFTSAQLKELERAF---QETHYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 31 rr~Rt~~s~~q~~~Le~~F---~~~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
++.|+.|+..|+..|+..| ..++||+..++..||..+||++.||++
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~ 50 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSN 50 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 6789999999999999999 899999999999999999999999973
No 63
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.19 E-value=2.9e-11 Score=61.35 Aligned_cols=44 Identities=20% Similarity=0.316 Sum_probs=41.4
Q ss_pred CCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 33 IRTTFTSAQLKELERAFQE---THYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 33 ~Rt~~s~~q~~~Le~~F~~---~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
.|+.|+.+|+..|+..|.. ++||+..++.+||..+||++.||++
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~ 47 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 47 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHH
Confidence 3689999999999999999 9999999999999999999999973
No 64
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.14 E-value=5.7e-11 Score=70.55 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=45.4
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 28 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 28 ~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.+++|.|+.|+..|+..||..|..++||+...+.+||..+||++.+|+
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~ 141 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVR 141 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhhee
Confidence 456788999999999999999999999999999999999999999986
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.13 E-value=7.2e-11 Score=63.56 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 32 RIRTTFTSAQLKELERAFQE---THYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 32 r~Rt~~s~~q~~~Le~~F~~---~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
+.|+.|+.+|+..|+..|.. ++||+..++..||..+||++.||++
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~ 51 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKN 51 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHccc
Confidence 45667999999999999999 9999999999999999999999973
No 66
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=3.1e-10 Score=61.83 Aligned_cols=40 Identities=20% Similarity=0.377 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 36 TFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 36 ~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.||.+|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~ 58 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREID 58 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhcc
Confidence 4899999999999999999999999999999999999987
No 67
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.08 E-value=3.3e-11 Score=73.96 Aligned_cols=51 Identities=27% Similarity=0.371 Sum_probs=43.2
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC---------------------CCcchhcC
Q psy7107 26 EKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKID---------------------LTEARVQK 76 (76)
Q Consensus 26 ~~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~---------------------l~~~qVk~ 76 (76)
..++.||.|+.|+..|+..|+..|..++||+...|.+||..++ |++.+|++
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~ 182 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYN 182 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccch
Confidence 4567789999999999999999999999999999999999999 99999873
No 68
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.07 E-value=1e-10 Score=61.58 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=41.0
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 31 RRIRTTFTSAQLKELERAF-QETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 31 rr~Rt~~s~~q~~~Le~~F-~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.+.+..++.+|+..||..| ..++||+..++.+||..+||++.|||
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVq 54 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 54 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcc
Confidence 3456677889999999999 99999999999999999999999986
No 69
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.06 E-value=2e-10 Score=59.49 Aligned_cols=39 Identities=21% Similarity=0.366 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 38 TSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 38 s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
+.+|+..||..|..++||+..++.+||..+||++.+|++
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkv 50 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKK 50 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhH
Confidence 689999999999999999999999999999999999973
No 70
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.05 E-value=1.4e-10 Score=72.27 Aligned_cols=45 Identities=22% Similarity=0.300 Sum_probs=37.9
Q ss_pred CccccCCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcC
Q psy7107 24 LTEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKID 68 (76)
Q Consensus 24 ~~~~~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~ 68 (76)
....++.||.|+.|++.|+..|+..|..++||+..+|++||..+|
T Consensus 136 ~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n 180 (221)
T 2h8r_A 136 EPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECN 180 (221)
T ss_dssp ------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHC
Confidence 345677889999999999999999999999999999999999987
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.00 E-value=7.5e-10 Score=57.01 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 35 TTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 35 t~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..++.+|+..||..|..++||+..++.+||..+||++.+|+
T Consensus 8 ~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVq 48 (64)
T 2e19_A 8 QPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVK 48 (64)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcC
Confidence 44568999999999999999999999999999999999987
No 72
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=98.98 E-value=9.1e-10 Score=57.52 Aligned_cols=42 Identities=31% Similarity=0.505 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 34 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 34 Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
-..+|..|+..||..|..++||+...+.+||..+||++.+||
T Consensus 8 ~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVq 49 (69)
T 2l9r_A 8 HSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVK 49 (69)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHH
T ss_pred CCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhhee
Confidence 346799999999999999999999999999999999999987
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.82 E-value=4.3e-09 Score=54.23 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=34.1
Q ss_pred HHHHHHHHHHH-hhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 39 SAQLKELERAF-QETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 39 ~~q~~~Le~~F-~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..|+.+||..| ..++||+...+.+||..|||++.|||
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVk 46 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 46 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHH
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHH
Confidence 45799999999 67999999999999999999999997
No 74
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=98.77 E-value=8e-09 Score=53.47 Aligned_cols=41 Identities=17% Similarity=0.242 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHh---hcCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 36 TFTSAQLKELERAFQ---ETHYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 36 ~~s~~q~~~Le~~F~---~~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
.|+.+|+..|+..|. .++||+..++.+||..+||++.||++
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~ 47 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNN 47 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhh
Confidence 689999999999999 99999999999999999999999974
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=98.47 E-value=1e-07 Score=62.47 Aligned_cols=46 Identities=20% Similarity=0.240 Sum_probs=42.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 31 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 31 rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
++.++.++..|+..|+..|+.++||+..+|.+||..+||+++|||+
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~ 411 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRV 411 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHH
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhH
Confidence 4567889999999999999999999999999999999999999974
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.31 E-value=8.5e-07 Score=46.24 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 39 SAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 39 ~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.+|+..|+..|..+++|+..++..||..+||+...||
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVr 50 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVK 50 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHH
Confidence 5789999999999999999999999999999999886
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=98.23 E-value=1.4e-06 Score=47.38 Aligned_cols=43 Identities=14% Similarity=0.226 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 34 RTTFTSAQLKELERAFQE---THYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 34 Rt~~s~~q~~~Le~~F~~---~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
-..|+.++...|+.-|.. ++||+..++.+||..+||++.||++
T Consensus 9 ~~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~ 54 (89)
T 2lk2_A 9 SHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCN 54 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHH
Confidence 456899999999999987 8999999999999999999999974
No 78
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=86.18 E-value=0.0045 Score=36.43 Aligned_cols=30 Identities=10% Similarity=-0.039 Sum_probs=21.3
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHhhcCCCCH
Q psy7107 28 RKQRRIRTTFTSAQLKELERAFQETHYPDI 57 (76)
Q Consensus 28 ~k~rr~Rt~~s~~q~~~Le~~F~~~~y~~~ 57 (76)
++.+|.||.|+.+|+..|+..|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 456788999999999999999999999864
No 79
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=74.10 E-value=7.1 Score=19.94 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=25.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchh
Q psy7107 31 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARV 74 (76)
Q Consensus 31 rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qV 74 (76)
++.+..|+.++.......+... . ...++|..+|++...|
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl 55 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTL 55 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHH
Confidence 4456688998866655555432 2 2457899999987655
No 80
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.51 E-value=2.7 Score=21.48 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=30.1
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 43 KELERAFQETHYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 43 ~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
..|+..|...+.+....-..|+.+..|+..|||+
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkd 52 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVLD 52 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHH
Confidence 4589999999999999999999999999998873
No 81
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=68.33 E-value=8 Score=18.16 Aligned_cols=41 Identities=15% Similarity=0.175 Sum_probs=24.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 34 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 34 Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
|..|+.+........+... ........++|..+|++...|.
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~ 43 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQ 43 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHH
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHH
Confidence 4568888877664444333 2111114588999999876653
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=64.47 E-value=13 Score=20.03 Aligned_cols=39 Identities=15% Similarity=0.222 Sum_probs=27.9
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchh
Q psy7107 33 IRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARV 74 (76)
Q Consensus 33 ~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qV 74 (76)
.|..||.++...+-..+..+.... ..++|..+|++...|
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl 42 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTL 42 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHH
Confidence 577899999888877765444432 236789999987655
No 83
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=57.96 E-value=8.5 Score=19.95 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=25.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 30 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 30 ~rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.......+|..+...|.-..+-. ...++|..|++++..|+
T Consensus 23 ~~~~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~ 62 (90)
T 3ulq_B 23 SQKEQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIE 62 (90)
T ss_dssp ------CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHH
T ss_pred ccccccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHH
Confidence 33456678999988887665222 35688999999998775
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=56.01 E-value=12 Score=15.97 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 36 TFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 36 ~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.++.++...+...+... + ...++|..+|++...|.
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~ 39 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIR 39 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHH
Confidence 45666665555544333 2 34578999999987664
No 85
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=47.96 E-value=34 Score=18.89 Aligned_cols=39 Identities=15% Similarity=0.266 Sum_probs=29.7
Q ss_pred CCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCc
Q psy7107 33 IRTTFTSAQLKELERAFQE-----THYPDIYTREEIAMKIDLTE 71 (76)
Q Consensus 33 ~Rt~~s~~q~~~Le~~F~~-----~~y~~~~~r~~La~~l~l~~ 71 (76)
.+..+|.+|+.+|...|.. +-+++..+-..+...+|...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 4567999999999999865 34788887777777777655
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=46.68 E-value=16 Score=17.19 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 36 TFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 36 ~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.+++.+...+...|... ..-.++|..+|++...|+
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~ 49 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIR 49 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHH
Confidence 35667777776554332 235588999999987765
No 87
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=45.94 E-value=23 Score=17.96 Aligned_cols=34 Identities=15% Similarity=0.421 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 37 FTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 37 ~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
++..+...|...|... ..-.++|..+|++...|+
T Consensus 38 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~ 71 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVK 71 (92)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHH
Confidence 4455555554433222 245688999999988775
No 88
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=45.33 E-value=24 Score=16.98 Aligned_cols=39 Identities=15% Similarity=0.089 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 36 TFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 36 ~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.+++.+...+...|...-. ....-.++|..+|++...|+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~ 48 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIR 48 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHH
Confidence 3577777777776641000 01134588999999998775
No 89
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=42.95 E-value=11 Score=21.57 Aligned_cols=31 Identities=0% Similarity=0.060 Sum_probs=19.8
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHcCCCcch
Q psy7107 42 LKELERAFQETHYPDIYTREEIAMKIDLTEAR 73 (76)
Q Consensus 42 ~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~q 73 (76)
+......|...-|-... -..+|...|++...
T Consensus 34 l~aa~~lf~~~G~~~~t-v~~IA~~agvs~~t 64 (215)
T 2qko_A 34 VNAAIEVLAREGARGLT-FRAVDVEANVPKGT 64 (215)
T ss_dssp HHHHHHHHHHTCTTTCC-HHHHHHHSSSTTTC
T ss_pred HHHHHHHHHHhChhhcc-HHHHHHHcCCCcch
Confidence 33455567777765443 34789999888643
No 90
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=41.41 E-value=27 Score=18.36 Aligned_cols=36 Identities=14% Similarity=0.104 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 34 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 34 Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
...++..+...|...++-. .-.++|..|++++..|+
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~ 67 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTIS 67 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHH
Confidence 4568899998887654322 24689999999988775
No 91
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=40.17 E-value=38 Score=19.99 Aligned_cols=31 Identities=32% Similarity=0.217 Sum_probs=23.3
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHcCCCcchh
Q psy7107 44 ELERAFQETHYPDIYTREEIAMKIDLTEARV 74 (76)
Q Consensus 44 ~Le~~F~~~~y~~~~~r~~La~~l~l~~~qV 74 (76)
.|...=+..-|++......+|..|+++..+|
T Consensus 30 ~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V 60 (181)
T 3i9v_2 30 LLRRVQQEEGWIRPERIEEIARLVGTTPTEV 60 (181)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHhCcCHHHH
Confidence 3333333346899999999999999999876
No 92
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=40.04 E-value=27 Score=16.54 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 37 FTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 37 ~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.++.+...+...|-..-+ ....-.++|..+|++...|+
T Consensus 6 L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~ 43 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIR 43 (68)
T ss_dssp CCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHH
Confidence 566676777665521101 11234588999999998775
No 93
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=39.68 E-value=42 Score=18.63 Aligned_cols=41 Identities=20% Similarity=0.346 Sum_probs=27.4
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCHHHHHHHHH----Hc--CCCcchh
Q psy7107 31 RRIRTTFTSAQLKELERAF-QETHYPDIYTREEIAM----KI--DLTEARV 74 (76)
Q Consensus 31 rr~Rt~~s~~q~~~Le~~F-~~~~y~~~~~r~~La~----~l--~l~~~qV 74 (76)
++.|..+|.+|-..+-..+ +.+.-.. ...||. .+ +++...|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~---q~~la~wa~~~f~~~is~sti 53 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSG---QQDLIEWFREKFGKDISQPSV 53 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCC---HHHHHHHHHHHHSSCCSSSST
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHCCCCcHHHH
Confidence 5678899999999998888 4454332 335566 66 5555444
No 94
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=39.34 E-value=38 Score=16.96 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHhhcCC--CCHHHHHHHHHHcCCCcchhc
Q psy7107 34 RTTFTSAQLKELERAFQETHY--PDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 34 Rt~~s~~q~~~Le~~F~~~~y--~~~~~r~~La~~l~l~~~qVk 75 (76)
...+|.++...|+.....-.- ++.+ ..+|..+|=+..+|+
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW--~~IA~~lgRt~~eV~ 49 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRW--EKIAHELGRSVTDVT 49 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHH--HHHHHHHTSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHH--HHHHHHhCCCHHHHH
Confidence 446899999999888654331 3333 467777787776665
No 95
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=34.62 E-value=45 Score=16.65 Aligned_cols=38 Identities=16% Similarity=0.104 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCcchh
Q psy7107 37 FTSAQLKELERAFQE-----THYPDIYTREEIAMKIDLTEARV 74 (76)
Q Consensus 37 ~s~~q~~~Le~~F~~-----~~y~~~~~r~~La~~l~l~~~qV 74 (76)
++.++...+...|.. +-+++..+-..+...+|+++..+
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~ 45 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILEL 45 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHH
Confidence 466777778777754 33566665555556667665443
No 96
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=34.62 E-value=39 Score=16.76 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=25.6
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 33 IRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 33 ~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.-..++..+...|...++ . ..-.++|..+|++...|+
T Consensus 18 ~~~~Lt~~e~~vl~l~~~-g-----~s~~eIA~~l~is~~tV~ 54 (82)
T 1je8_A 18 DVNQLTPRERDILKLIAQ-G-----LPNKMIARRLDITESTVK 54 (82)
T ss_dssp CGGGSCHHHHHHHHHHTT-T-----CCHHHHHHHHTSCHHHHH
T ss_pred HHccCCHHHHHHHHHHHc-C-----CCHHHHHHHHCcCHHHHH
Confidence 344578888888876322 1 235688999999988775
No 97
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=33.94 E-value=28 Score=18.86 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCCcchhc
Q psy7107 57 IYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 57 ~~~r~~La~~l~l~~~qVk 75 (76)
...-.++|..+|++...|+
T Consensus 124 g~s~~EIA~~lgis~~tV~ 142 (164)
T 3mzy_A 124 GYSYREIATILSKNLKSID 142 (164)
T ss_dssp TCCHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHH
Confidence 3355689999999998775
No 98
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=33.40 E-value=49 Score=16.53 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 37 FTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 37 ~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.++.+...+...|...-- ....-.++|..+|++...|+
T Consensus 19 L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~ 56 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIR 56 (87)
T ss_dssp SCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHH
Confidence 566676777665531000 11134588999999998775
No 99
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.74 E-value=14 Score=17.05 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=12.8
Q ss_pred HHHHHHHcCCCcchhc
Q psy7107 60 REEIAMKIDLTEARVQ 75 (76)
Q Consensus 60 r~~La~~l~l~~~qVk 75 (76)
-.++|..+|+++..|+
T Consensus 16 ~~eIA~~l~is~~tV~ 31 (61)
T 2jpc_A 16 NHGISEKLHISIKTVE 31 (61)
T ss_dssp SHHHHHHTCSCHHHHH
T ss_pred HHHHHHHhCCCHHHHH
Confidence 3578999999987765
No 100
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=32.23 E-value=50 Score=16.85 Aligned_cols=35 Identities=23% Similarity=0.201 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 35 TTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 35 t~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..++..+...|...++-. .-.++|..+|++...|+
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~ 60 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVK 60 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHH
Confidence 457888888887653322 24688999999988775
No 101
>3h0d_A CTSR; protein DNA complex, winged HTH domain, 4-helix bundle, DNA tandem repeat, transcription/DNA complex; HET: DNA; 2.40A {Bacillus stearothermophilus}
Probab=30.87 E-value=25 Score=20.56 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=14.3
Q ss_pred HHHHHHHHcCCCcchh
Q psy7107 59 TREEIAMKIDLTEARV 74 (76)
Q Consensus 59 ~r~~La~~l~l~~~qV 74 (76)
.|.+||..++|-++|+
T Consensus 26 ~R~eLA~~F~CvPSQI 41 (155)
T 3h0d_A 26 KRSEIANKFRCVPSQI 41 (155)
T ss_dssp CHHHHHHHTTSCTHHH
T ss_pred eHHHHHHhcCCChhhc
Confidence 5889999999999986
No 102
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=29.98 E-value=43 Score=17.99 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 36 TFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 36 ~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
.+++.+...+...|.... .-.++|..+|++...|+
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~ 56 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVY 56 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHH
Confidence 356667666665543332 34688999999987765
No 103
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=29.33 E-value=14 Score=20.67 Aligned_cols=17 Identities=18% Similarity=0.174 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCCcchhc
Q psy7107 59 TREEIAMKIDLTEARVQ 75 (76)
Q Consensus 59 ~r~~La~~l~l~~~qVk 75 (76)
...+||.+.||++.+|.
T Consensus 94 n~~eLArkYgLSer~I~ 110 (129)
T 1rr7_A 94 NVSELTTRYGVTFNTVY 110 (129)
T ss_dssp CHHHHHHHHTCCHHHHH
T ss_pred CHHHHHHHHCCCHHHHH
Confidence 45689999999998875
No 104
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=28.39 E-value=62 Score=16.18 Aligned_cols=45 Identities=22% Similarity=0.158 Sum_probs=29.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHc-CCCcchhc
Q psy7107 31 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKI-DLTEARVQ 75 (76)
Q Consensus 31 rr~Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l-~l~~~qVk 75 (76)
.-.+..+|.++-..|+.....-.--....-..+|..+ |=+..+|+
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr 60 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCI 60 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHH
Confidence 4456789999999998877653221234456788777 45555554
No 105
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=28.37 E-value=56 Score=18.40 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCc
Q psy7107 34 RTTFTSAQLKELERAFQE-----THYPDIYTREEIAMKIDLTE 71 (76)
Q Consensus 34 Rt~~s~~q~~~Le~~F~~-----~~y~~~~~r~~La~~l~l~~ 71 (76)
.+.+|.+|+.+|...|.. +-+++..+-..+...+|+..
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 44 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSP 44 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCC
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCCh
Confidence 456888999999998864 33677777666666666543
No 106
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=28.29 E-value=43 Score=14.24 Aligned_cols=33 Identities=9% Similarity=0.309 Sum_probs=19.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchh
Q psy7107 37 FTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARV 74 (76)
Q Consensus 37 ~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qV 74 (76)
++.++...+...+... . ...++|..+|++...|
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv 38 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTL 38 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHH
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHH
Confidence 4455555444444333 2 3457899999987655
No 107
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=27.39 E-value=45 Score=14.83 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 39 SAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 39 ~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
+++...+...+... + ...++|..+|++...|.
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~ 49 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVR 49 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHH
Confidence 55555554444332 2 35588999999987664
No 108
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=26.93 E-value=51 Score=18.45 Aligned_cols=17 Identities=35% Similarity=0.385 Sum_probs=13.5
Q ss_pred HHHHHHHHcCCCcchhc
Q psy7107 59 TREEIAMKIDLTEARVQ 75 (76)
Q Consensus 59 ~r~~La~~l~l~~~qVk 75 (76)
.-.++|..+|++...|+
T Consensus 158 s~~EIA~~lgis~~tV~ 174 (194)
T 1or7_A 158 SYEEIAAIMDCPVGTVR 174 (194)
T ss_dssp CHHHHHHHTTSCHHHHH
T ss_pred CHHHHHHHHCCCHHHHH
Confidence 34588999999988775
No 109
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=26.43 E-value=78 Score=16.81 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 37 FTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 37 ~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
+++.+...+...|... ..-.++|..+|++...|+
T Consensus 26 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~ 59 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVY 59 (113)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHH
Confidence 4555655555443322 235688999999987765
No 110
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=25.60 E-value=57 Score=16.35 Aligned_cols=36 Identities=19% Similarity=0.155 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 34 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 34 Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
-..++..+...|...+.-. .-.++|..+|++...|+
T Consensus 27 l~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~ 62 (91)
T 2rnj_A 27 YEMLTEREMEILLLIAKGY------SNQEIASASHITIKTVK 62 (91)
T ss_dssp GGGCCSHHHHHHHHHHTTC------CTTHHHHHHTCCHHHHH
T ss_pred HhcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHH
Confidence 3457888888887643322 23478999999987775
No 111
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=24.77 E-value=42 Score=13.79 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=8.2
Q ss_pred CCCCCHHHHHHHHH
Q psy7107 34 RTTFTSAQLKELER 47 (76)
Q Consensus 34 Rt~~s~~q~~~Le~ 47 (76)
-++|...|+.+|..
T Consensus 6 vtrfdekqieelld 19 (31)
T 4h62_V 6 VTRFDEKQIEELLD 19 (31)
T ss_dssp ----CHHHHHHHHH
T ss_pred cccccHHHHHHHHH
Confidence 46788999988864
No 112
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=24.74 E-value=75 Score=15.90 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCCcchh
Q psy7107 37 FTSAQLKELERAFQE-----THYPDIYTREEIAMKIDLTEARV 74 (76)
Q Consensus 37 ~s~~q~~~Le~~F~~-----~~y~~~~~r~~La~~l~l~~~qV 74 (76)
++.++...+...|.. +-+++..+-..+...+++++..+
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~ 46 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLL 46 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHH
Confidence 456777777777743 33566666666666677766543
No 113
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=24.03 E-value=86 Score=16.53 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 35 TTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 35 t~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..++.++...+...+.... ...++|..+|++...|.
T Consensus 5 ~~~s~~~r~~i~~~~~~G~-----s~~~ia~~lgis~~Tv~ 40 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLNV-----SLHEMSRKISRSRHCIR 40 (141)
T ss_dssp CCCCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHH
Confidence 4567777777666664432 24578999999887663
No 114
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=23.74 E-value=29 Score=17.70 Aligned_cols=16 Identities=6% Similarity=0.268 Sum_probs=12.8
Q ss_pred HHHHHHHcCCCcchhc
Q psy7107 60 REEIAMKIDLTEARVQ 75 (76)
Q Consensus 60 r~~La~~l~l~~~qVk 75 (76)
..+||..||++...|+
T Consensus 30 ~~eLA~~Lgvsr~tV~ 45 (81)
T 1qbj_A 30 AHDLSGKLGTPKKEIN 45 (81)
T ss_dssp HHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHCcCHHHHH
Confidence 4579999999987764
No 115
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=23.33 E-value=83 Score=18.09 Aligned_cols=34 Identities=18% Similarity=0.267 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 37 FTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 37 ~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
+++.+...|...|... ..-.++|..+|++...|+
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~ 221 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVS 221 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHH
Confidence 3455555554443222 245588999999987775
No 116
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=23.06 E-value=31 Score=17.24 Aligned_cols=16 Identities=6% Similarity=0.268 Sum_probs=12.9
Q ss_pred HHHHHHHcCCCcchhc
Q psy7107 60 REEIAMKIDLTEARVQ 75 (76)
Q Consensus 60 r~~La~~l~l~~~qVk 75 (76)
..+||..||++...|.
T Consensus 34 ~~eLA~~Lgvs~~tV~ 49 (77)
T 1qgp_A 34 AHDLSGKLGTPKKEIN 49 (77)
T ss_dssp HHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHCcCHHHHH
Confidence 4589999999987664
No 117
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=22.87 E-value=88 Score=17.23 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHhh-----c--CCCCHHHHHHHHHHcCCCc
Q psy7107 36 TFTSAQLKELERAFQE-----T--HYPDIYTREEIAMKIDLTE 71 (76)
Q Consensus 36 ~~s~~q~~~Le~~F~~-----~--~y~~~~~r~~La~~l~l~~ 71 (76)
.+|.+|+.+|...|.. + -+++..+-..+.+.||+..
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~ 44 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNP 44 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCC
Confidence 4689999999998753 2 2566666656667777643
No 118
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=22.61 E-value=85 Score=15.75 Aligned_cols=37 Identities=8% Similarity=0.239 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHcCCCcchh
Q psy7107 34 RTTFTSAQLKELERAFQET-HYPDIYTREEIAMKIDLTEARV 74 (76)
Q Consensus 34 Rt~~s~~q~~~Le~~F~~~-~y~~~~~r~~La~~l~l~~~qV 74 (76)
|..||.++....-..+... .+ ...++|..+|++...|
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl 40 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTL 40 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHH
Confidence 3568888776665554322 21 2457899999987655
No 119
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=21.91 E-value=41 Score=16.99 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=14.0
Q ss_pred CCCHHHHHHHHHHcCCCcchhc
Q psy7107 54 YPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 54 y~~~~~r~~La~~l~l~~~qVk 75 (76)
||. ...+||..+|++...|.
T Consensus 23 ~~p--sv~EIa~~lgvS~~TVr 42 (77)
T 2jt1_A 23 APV--KTRDIADAAGLSIYQVR 42 (77)
T ss_dssp SCE--EHHHHHHHHTCCHHHHH
T ss_pred CCc--CHHHHHHHHCCCHHHHH
Confidence 553 34589999999876553
No 120
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=21.81 E-value=64 Score=18.28 Aligned_cols=17 Identities=18% Similarity=0.403 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHcCCCc
Q psy7107 55 PDIYTREEIAMKIDLTE 71 (76)
Q Consensus 55 ~~~~~r~~La~~l~l~~ 71 (76)
.+...|.+||..|+++.
T Consensus 81 sSl~~RkeLA~eL~~~~ 97 (130)
T 2gqb_A 81 SSLSARKELAKELGYSG 97 (130)
T ss_dssp CSHHHHHHHHHHHTCCC
T ss_pred ccHHHHHHHHHHhCCCC
Confidence 46678999999999874
No 121
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=21.59 E-value=1.2e+02 Score=17.13 Aligned_cols=33 Identities=18% Similarity=0.145 Sum_probs=26.5
Q ss_pred CCCCHHHHHHHHHHHhh--cCCCCHHHHHHHHHHc
Q psy7107 35 TTFTSAQLKELERAFQE--THYPDIYTREEIAMKI 67 (76)
Q Consensus 35 t~~s~~q~~~Le~~F~~--~~y~~~~~r~~La~~l 67 (76)
...+++++..|+..++. +.+++...+-++|-.|
T Consensus 16 ~~~~~eeL~~l~~qy~~E~~~~vs~qt~F~yAw~L 50 (134)
T 3o48_A 16 EPLYPQQLEILRQQVVSEGGPTATIQSRFNYAWGL 50 (134)
T ss_dssp CCCCHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 45789999999999976 5678888888877655
No 122
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=21.15 E-value=45 Score=15.59 Aligned_cols=15 Identities=20% Similarity=0.461 Sum_probs=11.8
Q ss_pred HHHHHHHcCCCcchh
Q psy7107 60 REEIAMKIDLTEARV 74 (76)
Q Consensus 60 r~~La~~l~l~~~qV 74 (76)
..+||..+|++..-|
T Consensus 13 q~~lA~~lGvs~~~V 27 (61)
T 1rzs_A 13 QRAVAKALGISDAAV 27 (61)
T ss_dssp HHHHHHHHTCCHHHH
T ss_pred HHHHHHHhCCCHHHH
Confidence 568999999987654
No 123
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=20.93 E-value=87 Score=16.70 Aligned_cols=15 Identities=7% Similarity=-0.099 Sum_probs=9.6
Q ss_pred HHHHHHHcCCCcchh
Q psy7107 60 REEIAMKIDLTEARV 74 (76)
Q Consensus 60 r~~La~~l~l~~~qV 74 (76)
..+||..+|++...|
T Consensus 87 q~~la~~~g~s~~~i 101 (133)
T 3o9x_A 87 QKEASEIFGGGVNAF 101 (133)
T ss_dssp HHHHHHHHCSCTTHH
T ss_pred HHHHHHHHCCCHHHH
Confidence 446777777776554
No 124
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=20.80 E-value=1.5e+02 Score=20.15 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=29.2
Q ss_pred CCCCCCHHHHHHHHHHHhh-----cCCCCHHHHHHHHHHcCCC
Q psy7107 33 IRTTFTSAQLKELERAFQE-----THYPDIYTREEIAMKIDLT 70 (76)
Q Consensus 33 ~Rt~~s~~q~~~Le~~F~~-----~~y~~~~~r~~La~~l~l~ 70 (76)
.+..++.+|+.+|...|.. +-+++..+-..+...+|+.
T Consensus 292 s~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~ 334 (440)
T 3u0k_A 292 TRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQN 334 (440)
T ss_dssp BCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCC
T ss_pred hHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCC
Confidence 5778999999999999854 4467777766666777654
No 125
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=20.74 E-value=1e+02 Score=18.41 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 35 TTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 35 t~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
..+|+.+...|.-..+-. .-.++|..|++++..|+
T Consensus 174 ~~Lt~re~~vl~~~~~G~------s~~eIa~~l~is~~tV~ 208 (237)
T 3szt_A 174 VRLTARETEMLKWTAVGK------TYGEIGLILSIDQRTVK 208 (237)
T ss_dssp CCCCHHHHHHHHHHHTTC------CHHHHHHHHTSCHHHHH
T ss_pred CCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHH
Confidence 446666666665432211 34678888999888775
No 126
>1fad_A Protein (FADD protein); apoptosis, death domain; NMR {Mus musculus} SCOP: a.77.1.2
Probab=20.74 E-value=42 Score=17.39 Aligned_cols=18 Identities=17% Similarity=0.385 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCCcchhc
Q psy7107 58 YTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 58 ~~r~~La~~l~l~~~qVk 75 (76)
..-..||..||+++..|.
T Consensus 26 ~~Wk~Lar~Lg~~~~~I~ 43 (99)
T 1fad_A 26 RDWKRLARELKVSEAKMD 43 (99)
T ss_dssp HHHHHHHHHTTCCHHHHH
T ss_pred hhHHHHHHHcCCCHHHHH
Confidence 456789999999987763
No 127
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=20.63 E-value=1.1e+02 Score=18.07 Aligned_cols=36 Identities=19% Similarity=0.025 Sum_probs=25.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 34 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 34 Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
...+|+.+...|.-..+- ..-.++|..|++++..|+
T Consensus 171 ~~~Lt~~e~~vl~~~~~g------~s~~eIa~~l~is~~tV~ 206 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVG------KTMEEIADVEGVKYNSVR 206 (234)
T ss_dssp CCCCCHHHHHHHHHHTTT------CCHHHHHHHHTCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHH
Confidence 445888888888653321 245688999999998776
No 128
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=20.59 E-value=1e+02 Score=18.25 Aligned_cols=36 Identities=17% Similarity=0.109 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 34 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 34 Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
...+|+.+...|.-..+-. .-.++|..||+++..|+
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~ 208 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQ 208 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHH
Confidence 3457888888876543222 34578999999998776
No 129
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=20.58 E-value=84 Score=14.89 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 37 FTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 37 ~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
+++.+...+...+. ...-.++|..+|++...|+
T Consensus 17 L~~~e~~vl~l~~~------g~s~~eIA~~l~is~~tV~ 49 (79)
T 1x3u_A 17 LSERERQVLSAVVA------GLPNKSIAYDLDISPRTVE 49 (79)
T ss_dssp HCHHHHHHHHHHTT------TCCHHHHHHHTTSCHHHHH
T ss_pred CCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHH
Confidence 45555555554221 1134578999999987764
No 130
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=20.16 E-value=43 Score=18.50 Aligned_cols=17 Identities=6% Similarity=0.351 Sum_probs=12.2
Q ss_pred HHHHHHHHHcCCCcchh
Q psy7107 58 YTREEIAMKIDLTEARV 74 (76)
Q Consensus 58 ~~r~~La~~l~l~~~qV 74 (76)
..-..||..||+++..|
T Consensus 18 ~~Wk~LAR~LGlse~dI 34 (122)
T 3ezq_B 18 KDWRRLARQLKVSDTKI 34 (122)
T ss_dssp TTHHHHHHHTTCCHHHH
T ss_pred hhHHHHHHHhCCCHHHH
Confidence 34557888888887655
No 131
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.03 E-value=83 Score=14.60 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhc
Q psy7107 34 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75 (76)
Q Consensus 34 Rt~~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk 75 (76)
-..+++.+...|...+ .. + .-.++|..+|++...|+
T Consensus 9 ~~~L~~~e~~il~~~~-~g-~----s~~eIA~~l~is~~tV~ 44 (74)
T 1fse_A 9 KPLLTKREREVFELLV-QD-K----TTKEIASELFISEKTVR 44 (74)
T ss_dssp CCCCCHHHHHHHHHHT-TT-C----CHHHHHHHHTSCHHHHH
T ss_pred CCCCCHHHHHHHHHHH-cC-C----CHHHHHHHHCCCHHHHH
Confidence 3457788888887632 22 2 34578999999987664
No 132
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=24.80 E-value=23 Score=17.97 Aligned_cols=39 Identities=21% Similarity=0.194 Sum_probs=22.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCcchhcC
Q psy7107 37 FTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 76 (76)
Q Consensus 37 ~s~~q~~~Le~~F~~~~y~~~~~r~~La~~l~l~~~qVk~ 76 (76)
+|.+.-..+...++..- ++...-..||.+||-++.||++
T Consensus 17 WTReeDR~IL~~cq~~G-~s~~tfa~iA~~Lnks~~QV~~ 55 (70)
T 2lr8_A 17 WTRNDDRVILLECQKRG-PSSKTFAYLAAKLDKNPNQVSE 55 (70)
Confidence 34444444444444332 2334556788888888888864
Done!