RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7107
(76 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 64.1 bits (156), Expect = 3e-16
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 28 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
R R+ R +T Q ELE+ F Y R E+A ++LTE +V+
Sbjct: 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 59.4 bits (144), Expect = 2e-14
Identities = 25/45 (55%), Positives = 35/45 (77%)
Query: 31 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
+R RT+FT Q++ LE+ F+ THYPD++ RE +A KIDL EAR+Q
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 46
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 57.1 bits (138), Expect = 1e-13
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 34 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
R T+T Q ELE+ F Y R EIA + LTE +++
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 42
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 57.2 bits (138), Expect = 1e-13
Identities = 33/47 (70%), Positives = 41/47 (87%)
Query: 29 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
KQRR RTTF+++QL ELERAF+ T YPDIYTREE+A + +LTEAR+Q
Sbjct: 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 47
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 56.4 bits (136), Expect = 2e-13
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 31 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
R+ R ++ QL+ELER + + R +I+ L+E ++
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 46
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 55.2 bits (133), Expect = 6e-13
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 31 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
+ + F++ Q ELE+ F+ Y R+ +A + L+E +V+
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 45
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 55.8 bits (134), Expect = 6e-13
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 31 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQK 76
R R T+ L +E F E YPD REEIA + + K
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGK 46
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 54.1 bits (130), Expect = 1e-12
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 32 RIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
R RT F+S QL L+R F E Y R++++ ++ L EA+++
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 44
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 53.8 bits (129), Expect = 2e-12
Identities = 29/46 (63%), Positives = 35/46 (76%)
Query: 30 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
QRR RT FTS QL++LE FQ YPD+ TREEIA+ +LTEARV+
Sbjct: 1 QRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 46
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 54.6 bits (131), Expect = 2e-12
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 28 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
+RT FT+ QL ELE+ F Y R EIA ++L E +V+
Sbjct: 25 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVK 72
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 53.7 bits (129), Expect = 2e-12
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 29 KQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
K R+RT QL L + PD +E++ L+ ++
Sbjct: 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 52.9 bits (127), Expect = 4e-12
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 34 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
R FT Q + L F+E P + I+ ++ L + V
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 43
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 53.1 bits (127), Expect = 6e-12
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 28 RKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
K+R+ R FT AQ ELER F++ Y RE +A I LT +V+
Sbjct: 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVK 54
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 52.2 bits (125), Expect = 1e-11
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 32 RIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
R RT FT QL LE+ F + +Y R E+A +++L E+ ++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 44
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 51.4 bits (123), Expect = 2e-11
Identities = 9/42 (21%), Positives = 21/42 (50%)
Query: 34 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
+++ + LE+ F+ + +EE+A K +T +V+
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVR 42
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 51.5 bits (123), Expect = 2e-11
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 31 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
R+ RT FT+AQL LER F++ Y I R E + + LTE +V+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 51.1 bits (122), Expect = 3e-11
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 31 RRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
RR RTTFTS+Q+ ELE+ F + Y +++ K+ L A+V+
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 46
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 50.0 bits (119), Expect = 8e-11
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 25 TEKRKQRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
T + ++R RT+ + LE F + P + IA ++ L + V+
Sbjct: 3 TLVQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVR 53
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 49.5 bits (118), Expect = 1e-10
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 32 RIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
+ RTT + A LER F E P +A +++L + V+
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 44
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 48.4 bits (115), Expect = 4e-10
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 30 QRRIRTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
+R+ R F+ AQ+ ELER F++ Y RE +A I LT +V+
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 48.1 bits (114), Expect = 5e-10
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 31 RRIRTTFTSAQLKELERAFQET-HYPDIYTREEIAMKIDLTEARVQK 76
T T Q++ LE F + +PD T IA + LTE + QK
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQK 48
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 47.5 bits (112), Expect = 1e-09
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 34 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
R + A + L +A++ P RE + + + E +
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQR 42
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 46.9 bits (111), Expect = 2e-09
Identities = 8/54 (14%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 26 EKRKQRRIRTTFTSAQLKELERAFQE----THYPDIYTREEIAMKIDLTEARVQ 75
+R RT FT+ Q +++ + D E+ + + ++
Sbjct: 13 SGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLK 66
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 46.3 bits (110), Expect = 2e-09
Identities = 8/48 (16%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 31 RRIRTTFTSAQLKELERAFQETH---YPDIYTREEIAMKIDLTEARVQ 75
+ R + + YP +++IA + +LT +V
Sbjct: 3 KNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVN 50
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 45.5 bits (108), Expect = 3e-09
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 38 TSAQLKELERAFQE-THYPDIYTREEIAMKIDLTEARVQ 75
T+ LE+ F T +PD E ++ ++D +Q
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQ 39
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 46.2 bits (109), Expect = 3e-09
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 1/52 (1%)
Query: 25 TEKRKQRRIRTTFTSAQLKELERAFQET-HYPDIYTREEIAMKIDLTEARVQ 75
+ R RT + L L+ + YPD ++ ++DL + +
Sbjct: 2 SSGSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 45.7 bits (108), Expect = 5e-09
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 31 RRIRTTFTSAQLKELERAFQE---THYPDIYTREEIAMKIDLTEARVQ 75
RR R F + L F YP +EE+A K +T ++V
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 44.4 bits (105), Expect = 1e-08
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 32 RIRTTFTSAQLKELERAFQ-ETHYPDIYTREEIAMKIDLTEARVQ 75
+ LE+ F T YPD + ++ ++D + ++Q
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQ 47
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 44.2 bits (104), Expect = 2e-08
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 34 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
RT+ + LE++F E P IA ++++ + ++
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIR 43
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 43.2 bits (102), Expect = 4e-08
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 37 FTSAQLKELERAFQE---THYPDIYTREEIAMKIDLTEARVQ 75
FT ++ LE F + Y D E + L+ +++
Sbjct: 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 46
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 38.2 bits (88), Expect = 5e-06
Identities = 7/42 (16%), Positives = 15/42 (35%)
Query: 34 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
T+ QL+ L+ +F + + + LT +
Sbjct: 8 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 49
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 34.3 bits (78), Expect = 1e-04
Identities = 6/42 (14%), Positives = 13/42 (30%)
Query: 34 RTTFTSAQLKELERAFQETHYPDIYTREEIAMKIDLTEARVQ 75
T QL L+ F + + +++ L +
Sbjct: 7 GKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEII 48
>d2bpa1_ b.121.5.1 (1:) Microvirus capsid proteins {Bacteriophage
phi-X174 [TaxId: 10847]}
Length = 426
Score = 24.8 bits (54), Expect = 1.1
Identities = 6/43 (13%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 36 TFTSAQLKELERAFQETHYPDIYTR--EEIAMKIDLTEARVQK 76
+ + ER + Y D+ + + + D V +
Sbjct: 197 AAYANLHTDQERDYFMQRYRDVISSFGGKTSYDADNRPLLVMR 239
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta
subunit, PheT, central domain {Thermus thermophilus
[TaxId: 274]}
Length = 207
Score = 24.5 bits (52), Expect = 1.4
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 20 HEGVLTEKRKQRRIRTTFTSAQLKELERAFQET-HYPDIYTREEIAMKIDLTEARV 74
+ GV RK++R+R + FQE Y + E A + L R+
Sbjct: 11 NRGVEAPYRKEQRLREVLSG-------LGFQEVYTYS--FMDPEDARRFRLDPPRL 57
>d1auib_ a.39.1.5 (B:) Calcineurin regulatory subunit (B-chain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 165
Score = 23.9 bits (50), Expect = 2.6
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 35 TTFTSAQLKELERAFQE 51
+ F + ++K L + F++
Sbjct: 8 SHFDADEIKRLGKRFKK 24
>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase
{Thermus thermophilus [TaxId: 274]}
Length = 421
Score = 23.3 bits (49), Expect = 3.7
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 35 TTFTSAQLKELERAFQETHYPDIYTR 60
T++ + F + +IY+R
Sbjct: 29 TSYVFKSPEHAANLFALKEFGNIYSR 54
>d1s6ca_ a.39.1.5 (A:) Kchip1, Kv4 potassium channel-interacting
protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 178
Score = 22.5 bits (47), Expect = 7.2
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 35 TTFTSAQLKELERAFQETHYPDIYTREE 62
T FT +L+ L R F+ + E
Sbjct: 8 TNFTKRELQVLYRGFKNECPSGVVNEET 35
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA)
{Aquifex aeolicus [TaxId: 63363]}
Length = 71
Score = 21.7 bits (46), Expect = 7.5
Identities = 7/35 (20%), Positives = 19/35 (54%)
Query: 40 AQLKELERAFQETHYPDIYTREEIAMKIDLTEARV 74
++L E E+ + + + +E+A ++ + +RV
Sbjct: 20 SKLPEREKLVIQLIFYEELPAKEVAKILETSVSRV 54
>d2zfda1 a.39.1.5 (A:32-214) Calcineurin B-like protein 2 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 183
Score = 22.2 bits (46), Expect = 8.2
Identities = 4/17 (23%), Positives = 11/17 (64%)
Query: 35 TTFTSAQLKELERAFQE 51
T F+ ++++ L F++
Sbjct: 9 TVFSVSEIEALYELFKK 25
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.379
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 280,022
Number of extensions: 10321
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 42
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.0 bits)