BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy7108
(703 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%)
Query: 45 GHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGT 104
GH VSC+ FSP +VSASWDKTVK+WN + VA PDG+
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS 574
Query: 105 EIVVATLDGQLIMFDVESAAQVGSVEA 131
DG ++++D+ ++ S+EA
Sbjct: 575 LCASGGKDGVVLLWDLAEGKKLYSLEA 601
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 62/267 (23%), Positives = 103/267 (38%), Gaps = 42/267 (15%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGM--VSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYK 100
L+GH V + VLSS G +S SWD ++LW+ + + D L VA+
Sbjct: 426 LTGHSHFVEDV----VLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFS 481
Query: 101 PDGTEIVVATLDGQLIMFDVESAAQVG---SVEARRD------LDSGRLDTDLVTREQSL 151
D +IV A+ D + +++ + E RD L +V+
Sbjct: 482 LDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK 541
Query: 152 KAKA------------------VSTVCYSADGSCILAAGQSKYICIYSSREGILLKKFTI 193
K VSTV S DGS + G+ + ++ EG L +++
Sbjct: 542 TVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL--YSL 599
Query: 194 TQNKSLDGINDFINRRKM---TEFG-NVSLIETRETHEGGNVVLKLPGVKKGDMAARVLK 249
N + + NR + TE G + +E++ E V LK K + K
Sbjct: 600 EANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATK 659
Query: 250 PEVRVFC--VKFSPTGQAWVAATTEGV 274
+V ++C + +S G + T+GV
Sbjct: 660 RKV-IYCTSLNWSADGSTLFSGYTDGV 685
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 72/279 (25%), Positives = 115/279 (41%), Gaps = 58/279 (20%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNA----VETDTQHETIQLLSDALC 96
+ L+GH V + FSP + SAS DKTVKLWN ++T T H S
Sbjct: 133 QTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNRNGQLLQTLTGHS-----SSVWG 185
Query: 97 VAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAV 156
VA+ PDG I A+ D + +++ G+L L S++
Sbjct: 186 VAFSPDGQTIASASDDKTVKLWNRN----------------GQLLQTLTGHSSSVRG--- 226
Query: 157 STVCYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGN 216
V +S DG I +A K + ++ +R G LL+ T+T + S +N R +
Sbjct: 227 --VAFSPDGQTIASASDDKTVKLW-NRNGQLLQ--TLTGHSS--SVNGVAFRPDGQTIAS 279
Query: 217 VSLIETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCVKFSPTGQAWVAATTE---- 272
S +T +KL + G + + V+ V FSP GQ +A+ +
Sbjct: 280 ASDDKT----------VKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVK 328
Query: 273 -----GVHIYSLDSGYVFDPFLLDISITPQSVKEALADK 306
G H+ +L +G+ + + S Q++ A DK
Sbjct: 329 LWNRNGQHLQTL-TGHSSSVWGVAFSPDGQTIASASDDK 366
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 69/156 (44%), Gaps = 33/156 (21%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLL----SDALC 96
+ L+GH V + FSP + SAS DKTVKLWN + QH +Q L S
Sbjct: 297 QTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR---NGQH--LQTLTGHSSSVWG 349
Query: 97 VAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAV 156
VA+ PDG I A+ D + +++ G+L L S++
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNRN----------------GQLLQTLTGHSSSVRG--- 390
Query: 157 STVCYSADGSCILAAGQSKYICIYSSREGILLKKFT 192
V +S DG I +A K + ++ +R G LL+ T
Sbjct: 391 --VAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLT 423
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 33/156 (21%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNA----VETDTQHETIQLLSDALC 96
+ L+GH V + FSP + SAS DKTVKLWN ++T T H S
Sbjct: 420 QTLTGHSSSVWGVAFSP--DDQTIASASDDKTVKLWNRNGQLLQTLTGHS-----SSVRG 472
Query: 97 VAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAV 156
VA+ PDG I A+ D + +++ G+L L S++
Sbjct: 473 VAFSPDGQTIASASDDKTVKLWNRN----------------GQLLQTLTGHSSSVRG--- 513
Query: 157 STVCYSADGSCILAAGQSKYICIYSSREGILLKKFT 192
V +S DG I +A K + ++ +R G LL+ T
Sbjct: 514 --VAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLT 546
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 65/154 (42%), Gaps = 33/154 (21%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNA----VETDTQHETIQLLSDALCVA 98
L H V + FSP + SAS DKTVKLWN ++T T H S VA
Sbjct: 12 LEAHSSSVRGVAFSP--DGQTIASASDDKTVKLWNRNGQLLQTLTGHS-----SSVWGVA 64
Query: 99 YKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVST 158
+ PDG I A+ D + +++ G+L L S++
Sbjct: 65 FSPDGQTIASASDDKTVKLWNRN----------------GQLLQTLTGHSSSVRG----- 103
Query: 159 VCYSADGSCILAAGQSKYICIYSSREGILLKKFT 192
V +S DG I +A K + ++ +R G LL+ T
Sbjct: 104 VAFSPDGQTIASASDDKTVKLW-NRNGQLLQTLT 136
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWN 77
+ L+GH V + FSP + SAS DKTVKLWN
Sbjct: 543 QTLTGHSSSVWGVAFSP--DGQTIASASSDKTVKLWN 577
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 41/244 (16%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSD-ALCVAY 99
+ +SGH+ +S + +S S +VSAS DKT+K+W+ V + +T++ S+ C +
Sbjct: 76 KTISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNF 132
Query: 100 KPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTV 159
P IV + D + ++DV++ + ++ A D VS V
Sbjct: 133 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------------PVSAV 172
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSL 219
++ DGS I+++ I+ + G LK +D N ++ K + G L
Sbjct: 173 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------IDDDNPPVSFVKFSPNGKYIL 225
Query: 220 IETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCV--KFSPTGQAWVAATTEG--VH 275
T + LKL KG + +C+ FS TG W+ + +E V+
Sbjct: 226 AATLDN------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 279
Query: 276 IYSL 279
I++L
Sbjct: 280 IWNL 283
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%)
Query: 46 HEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTE 105
H VSC+ FSP S+ +VS WDK VK+WN + I V PDG+
Sbjct: 170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 229
Query: 106 IVVATLDGQLIMFDVESAAQVGSVEA 131
DGQ +++D+ + +++
Sbjct: 230 CASGGKDGQAMLWDLNEGKHLYTLDG 255
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 102/269 (37%), Gaps = 59/269 (21%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQ--------LLSDA 94
L GH G V+ I +P ++SAS DKT+ +W +T + Q +SD
Sbjct: 34 LKGHNGWVTQIATTPQFPDM-ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD- 91
Query: 95 LCVAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAK 154
V DG + + DG L ++D L T TR K
Sbjct: 92 --VVISSDGQFALSGSWDGTLRLWD--------------------LTTGTTTRRFVGHTK 129
Query: 155 AVSTVCYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNK----------SLDGIND 204
V +V +S+D I++ + K I ++++ + + K+T+ S + N
Sbjct: 130 DVLSVAFSSDNRQIVSGSRDKTIKLWNT---LGVCKYTVQDESHSEWVSCVRFSPNSSNP 186
Query: 205 FI---NRRKMTEFGNVSLIETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCVKFSP 261
I K+ + N++ + + H G G + + P+ + C
Sbjct: 187 IIVSCGWDKLVKVWNLANCKLKTNHIG----------HTGYLNTVTVSPDGSL-CASGGK 235
Query: 262 TGQAWVAATTEGVHIYSLDSGYVFDPFLL 290
GQA + EG H+Y+LD G + +
Sbjct: 236 DGQAMLWDLNEGKHLYTLDGGDIINALCF 264
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGM--VSASWDKTVKLWNAVETDTQHETIQLLSDALCVA 98
L GH VS + V+SS G +S SWD T++LW+ T + D L VA
Sbjct: 80 RALRGHSHFVSDV----VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA 135
Query: 99 YKPDGTEIVVATLDGQLIMFD 119
+ D +IV + D + +++
Sbjct: 136 FSSDNRQIVSGSRDKTIKLWN 156
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 40/86 (46%)
Query: 46 HEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTE 105
H VSC+ FSP S+ +VS WDK VK+WN + I V PDG+
Sbjct: 147 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSL 206
Query: 106 IVVATLDGQLIMFDVESAAQVGSVEA 131
DGQ +++D+ + +++
Sbjct: 207 CASGGKDGQAMLWDLNEGKHLYTLDG 232
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/269 (21%), Positives = 102/269 (37%), Gaps = 59/269 (21%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQ--------LLSDA 94
L GH G V+ I +P ++SAS DKT+ +W +T + Q +SD
Sbjct: 11 LKGHNGWVTQIATTPQFPDM-ILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD- 68
Query: 95 LCVAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAK 154
V DG + + DG L ++D L T TR K
Sbjct: 69 --VVISSDGQFALSGSWDGTLRLWD--------------------LTTGTTTRRFVGHTK 106
Query: 155 AVSTVCYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNK----------SLDGIND 204
V +V +S+D I++ + K I ++++ + + K+T+ S + N
Sbjct: 107 DVLSVAFSSDNRQIVSGSRDKTIKLWNT---LGVCKYTVQDESHSEWVSCVRFSPNSSNP 163
Query: 205 FI---NRRKMTEFGNVSLIETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCVKFSP 261
I K+ + N++ + + H G G + + P+ + C
Sbjct: 164 IIVSCGWDKLVKVWNLANCKLKTNHIG----------HTGYLNTVTVSPDGSL-CASGGK 212
Query: 262 TGQAWVAATTEGVHIYSLDSGYVFDPFLL 290
GQA + EG H+Y+LD G + +
Sbjct: 213 DGQAMLWDLNEGKHLYTLDGGDIINALCF 241
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGM--VSASWDKTVKLWNAVETDTQHETIQLLSDALCVA 98
L GH VS + V+SS G +S SWD T++LW+ T + D L VA
Sbjct: 57 RALRGHSHFVSDV----VISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVA 112
Query: 99 YKPDGTEIVVATLDGQLIMFD 119
+ D +IV + D + +++
Sbjct: 113 FSSDNRQIVSGSRDKTIKLWN 133
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 41/244 (16%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSD-ALCVAY 99
+ +SGH+ +S + +S S +VSAS DKT+K+W+ V + +T++ S+ C +
Sbjct: 62 KTISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNF 118
Query: 100 KPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTV 159
P IV + D + ++DV++ + ++ A D VS V
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------------PVSAV 158
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSL 219
++ DGS I+++ I+ + G LK +D N ++ K + G L
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------IDDDNPPVSFVKFSPNGKYIL 211
Query: 220 IETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCV--KFSPTGQAWVAATTEG--VH 275
T + LKL KG + +C+ FS TG W+ + +E V+
Sbjct: 212 AATLDN------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Query: 276 IYSL 279
I++L
Sbjct: 266 IWNL 269
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 41/244 (16%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSD-ALCVAY 99
+ +SGH+ +S + +S S +VSAS DKT+K+W+ V + +T++ S+ C +
Sbjct: 62 KTISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNF 118
Query: 100 KPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTV 159
P IV + D + ++DV++ + ++ A D VS V
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------------PVSAV 158
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSL 219
++ DGS I+++ I+ + G LK +D N ++ K + G L
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------IDDDNPPVSFVKFSPNGKYIL 211
Query: 220 IETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCV--KFSPTGQAWVAATTEG--VH 275
T + LKL KG + +C+ FS TG W+ + +E V+
Sbjct: 212 AATLDN------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Query: 276 IYSL 279
I++L
Sbjct: 266 IWNL 269
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 41/244 (16%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSD-ALCVAY 99
+ +SGH+ +S + +S S +VSAS DKT+K+W+ V + +T++ S+ C +
Sbjct: 62 KTISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNF 118
Query: 100 KPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTV 159
P IV + D + ++DV++ + ++ A D VS V
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------------PVSAV 158
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSL 219
++ DGS I+++ I+ + G LK +D N ++ K + G L
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------IDDDNPPVSFVKFSPNGKYIL 211
Query: 220 IETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCV--KFSPTGQAWVAATTEG--VH 275
T + LKL KG + +C+ FS TG W+ + +E V+
Sbjct: 212 AATLDN------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Query: 276 IYSL 279
I++L
Sbjct: 266 IWNL 269
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 41/244 (16%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSD-ALCVAY 99
+ +SGH+ +S + +S S +VSAS DKT+K+W+ V + +T++ S+ C +
Sbjct: 55 KTISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNF 111
Query: 100 KPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTV 159
P IV + D + ++DV++ + ++ A D VS V
Sbjct: 112 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------------PVSAV 151
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSL 219
++ DGS I+++ I+ + G LK +D N ++ K + G L
Sbjct: 152 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------IDDDNPPVSFVKFSPNGKYIL 204
Query: 220 IETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCV--KFSPTGQAWVAATTEG--VH 275
T + LKL KG + +C+ FS TG W+ + +E V+
Sbjct: 205 AATLDN------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 258
Query: 276 IYSL 279
I++L
Sbjct: 259 IWNL 262
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 41/244 (16%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSD-ALCVAY 99
+ +SGH+ +S + +S S +VSAS DKT+K+W+ V + +T++ S+ C +
Sbjct: 58 KTISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNF 114
Query: 100 KPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTV 159
P IV + D + ++DV++ + ++ A D VS V
Sbjct: 115 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------------PVSAV 154
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSL 219
++ DGS I+++ I+ + G LK +D N ++ K + G L
Sbjct: 155 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------IDDDNPPVSFVKFSPNGKYIL 207
Query: 220 IETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCV--KFSPTGQAWVAATTEG--VH 275
T + LKL KG + +C+ FS TG W+ + +E V+
Sbjct: 208 AATLDN------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 261
Query: 276 IYSL 279
I++L
Sbjct: 262 IWNL 265
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 41/244 (16%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSD-ALCVAY 99
+ +SGH+ +S + +S S +VSAS DKT+K+W+ V + +T++ S+ C +
Sbjct: 65 KTISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNF 121
Query: 100 KPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTV 159
P IV + D + ++DV++ + ++ A D VS V
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------------PVSAV 161
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSL 219
++ DGS I+++ I+ + G LK +D N ++ K + G L
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------IDDDNPPVSFVKFSPNGKYIL 214
Query: 220 IETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCV--KFSPTGQAWVAATTEG--VH 275
T + LKL KG + +C+ FS TG W+ + +E V+
Sbjct: 215 AATLDN------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 276 IYSL 279
I++L
Sbjct: 269 IWNL 272
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 41/244 (16%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSD-ALCVAY 99
+ +SGH+ +S + +S S +VSAS DKT+K+W+ V + +T++ S+ C +
Sbjct: 59 KTISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNF 115
Query: 100 KPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTV 159
P IV + D + ++DV++ + ++ A D VS V
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------------PVSAV 155
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSL 219
++ DGS I+++ I+ + G LK +D N ++ K + G L
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------IDDDNPPVSFVKFSPNGKYIL 208
Query: 220 IETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCV--KFSPTGQAWVAATTEG--VH 275
T + LKL KG + +C+ FS TG W+ + +E V+
Sbjct: 209 AATLDN------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 276 IYSL 279
I++L
Sbjct: 263 IWNL 266
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 41/244 (16%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSD-ALCVAY 99
+ +SGH+ +S + +S S +VSAS DKT+K+W+ V + +T++ S+ C +
Sbjct: 60 KTISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNF 116
Query: 100 KPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTV 159
P IV + D + ++DV++ + ++ A D VS V
Sbjct: 117 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------------PVSAV 156
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSL 219
++ DGS I+++ I+ + G LK +D N ++ K + G L
Sbjct: 157 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------IDDDNPPVSFVKFSPNGKYIL 209
Query: 220 IETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCV--KFSPTGQAWVAATTEG--VH 275
T + LKL KG + +C+ FS TG W+ + +E V+
Sbjct: 210 AATLDN------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 263
Query: 276 IYSL 279
I++L
Sbjct: 264 IWNL 267
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 41/244 (16%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSD-ALCVAY 99
+ +SGH+ +S + +S S +VSAS DKT+K+W+ V + +T++ S+ C +
Sbjct: 65 KTISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNF 121
Query: 100 KPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTV 159
P IV + D + ++DV++ + ++ A D VS V
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------------PVSAV 161
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSL 219
++ DGS I+++ I+ + G LK +D N ++ K + G L
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------IDDDNPPVSFVKFSPNGKYIL 214
Query: 220 IETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCV--KFSPTGQAWVAATTEG--VH 275
T + LKL KG + +C+ FS TG W+ + +E V+
Sbjct: 215 AATLDN------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 276 IYSL 279
I++L
Sbjct: 269 IWNL 272
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 41/244 (16%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSD-ALCVAY 99
+ +SGH+ +S + +S S +VSAS DKT+K+W+ V + +T++ S+ C +
Sbjct: 64 KTISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNF 120
Query: 100 KPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTV 159
P IV + D + ++DV++ + ++ A D VS V
Sbjct: 121 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------------PVSAV 160
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSL 219
++ DGS I+++ I+ + G LK +D N ++ K + G L
Sbjct: 161 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------IDDDNPPVSFVKFSPNGKYIL 213
Query: 220 IETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCV--KFSPTGQAWVAATTEG--VH 275
T + LKL KG + +C+ FS TG W+ + +E V+
Sbjct: 214 AATLDN------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 267
Query: 276 IYSL 279
I++L
Sbjct: 268 IWNL 271
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 41/244 (16%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSD-ALCVAY 99
+ +SGH+ +S + +S S +VSAS DKT+K+W+ V + +T++ S+ C +
Sbjct: 65 KTISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNF 121
Query: 100 KPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTV 159
P IV + D + ++DV++ + ++ A D VS V
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------------PVSAV 161
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSL 219
++ DGS I+++ I+ + G LK +D N ++ K + G L
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------IDDDNPPVSFVKFSPNGKYIL 214
Query: 220 IETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCV--KFSPTGQAWVAATTEG--VH 275
T + LKL KG + +C+ FS TG W+ + +E V+
Sbjct: 215 AATLDN------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 276 IYSL 279
I++L
Sbjct: 269 IWNL 272
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 41/244 (16%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSD-ALCVAY 99
+ +SGH+ +S + +S S +VSAS DKT+K+W+ V + +T++ S+ C +
Sbjct: 59 KTISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNF 115
Query: 100 KPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTV 159
P IV + D + ++DV++ + ++ A D VS V
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------------PVSAV 155
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSL 219
++ DGS I+++ I+ + G LK +D N ++ K + G L
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------IDDDNPPVSFVKFSPNGKYIL 208
Query: 220 IETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCV--KFSPTGQAWVAATTEG--VH 275
T + LKL KG + +C+ FS TG W+ + +E V+
Sbjct: 209 AATLDN------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 276 IYSL 279
I++L
Sbjct: 263 IWNL 266
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 108/263 (41%), Gaps = 47/263 (17%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQ----LLSDALCVA 98
L+GH VS ++FSP + + S+S DK +K+W A + + +TI +SD VA
Sbjct: 22 LAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD---VA 75
Query: 99 YKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRD-------------LDSGRLD---- 141
+ D +V A+ D L ++DV S + +++ + + SG D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 142 -----TDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSREGILLKKFTITQN 196
T + + + VS V ++ DGS I+++ I+ + G LK
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL----- 190
Query: 197 KSLDGINDFINRRKMTEFGNVSLIETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFC 256
+D N ++ K + G L T + LKL KG + +C
Sbjct: 191 --IDDDNPPVSFVKFSPNGKYILAATLDN------TLKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 257 V--KFSPTGQAWVAATTEGVHIY 277
+ FS TG W+ + +E +Y
Sbjct: 243 IFANFSVTGGKWIVSGSEDNMVY 265
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 30/222 (13%)
Query: 65 VSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESAA 124
+SASWDKT++LW+ +T + SD + V + I+ + D + ++ ++
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
Query: 125 QVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSRE 184
L T L + + + V D I++AG K + ++
Sbjct: 141 ---------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN--- 182
Query: 185 GILLKKFTITQNKSLDGINDFINRRKMTEFGNVSLIETRETHEGGNVVLKLPGVKKGDMA 244
L +F I + G N IN +T + +LI + + G ++L KK A
Sbjct: 183 ---LNQFQIEAD--FIGHNSNIN--TLTASPDGTLIAS--AGKDGEIMLWNLAAKK---A 230
Query: 245 ARVLKPEVRVFCVKFSPTGQAWVAATTEGVHIYSLDSGYVFD 286
L + VF + FSP AAT G+ ++SLD Y+ D
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD 272
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 43 LSGHEGPVSCIEFSPVL----SSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVA 98
L GH VS + P S ++SA DK VK WN + + + I S+ +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 99 YKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDL 135
PDGT I A DG+++++++ + + ++ A+ ++
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 30/222 (13%)
Query: 65 VSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESAA 124
+SASWDKT++LW+ +T + SD + V + I+ + D + ++ ++
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
Query: 125 QVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSRE 184
L T L + + + V D I++AG K + ++
Sbjct: 141 ---------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN--- 182
Query: 185 GILLKKFTITQNKSLDGINDFINRRKMTEFGNVSLIETRETHEGGNVVLKLPGVKKGDMA 244
L +F I + G N IN +T + +LI + + G ++L KK A
Sbjct: 183 ---LNQFQIEAD--FIGHNSNIN--TLTASPDGTLIAS--AGKDGEIMLWNLAAKK---A 230
Query: 245 ARVLKPEVRVFCVKFSPTGQAWVAATTEGVHIYSLDSGYVFD 286
L + VF + FSP AAT G+ ++SLD Y+ D
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD 272
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 43 LSGHEGPVSCIEFSPVL----SSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVA 98
L GH VS + P S ++SA DK VK WN + + + I S+ +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 99 YKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDL 135
PDGT I A DG+++++++ + + ++ A+ ++
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 30/222 (13%)
Query: 65 VSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESAA 124
+SASWDKT++LW+ +T + SD + V + I+ + D + ++ ++
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
Query: 125 QVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSRE 184
L T L + + + V D I++AG K + ++
Sbjct: 141 ---------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN--- 182
Query: 185 GILLKKFTITQNKSLDGINDFINRRKMTEFGNVSLIETRETHEGGNVVLKLPGVKKGDMA 244
L +F I + G N IN +T + +LI + + G ++L KK A
Sbjct: 183 ---LNQFQIEAD--FIGHNSNIN--TLTASPDGTLIAS--AGKDGEIMLWNLAAKK---A 230
Query: 245 ARVLKPEVRVFCVKFSPTGQAWVAATTEGVHIYSLDSGYVFD 286
L + VF + FSP AAT G+ ++SLD Y+ D
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD 272
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 43 LSGHEGPVSCIEFSPVL----SSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVA 98
L GH VS + P S ++SA DK VK WN + + + I S+ +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 99 YKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDL 135
PDGT I A DG+++++++ + + ++ A+ ++
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 30/222 (13%)
Query: 65 VSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESAA 124
+SASWDKT++LW+ +T + SD + V + I+ + D + ++ ++
Sbjct: 75 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 134
Query: 125 QVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSRE 184
L T L + + + V D I++AG K + ++
Sbjct: 135 ---------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN--- 176
Query: 185 GILLKKFTITQNKSLDGINDFINRRKMTEFGNVSLIETRETHEGGNVVLKLPGVKKGDMA 244
L +F I + G N IN +T + +LI + + G ++L KK A
Sbjct: 177 ---LNQFQIEAD--FIGHNSNIN--TLTASPDGTLIAS--AGKDGEIMLWNLAAKK---A 224
Query: 245 ARVLKPEVRVFCVKFSPTGQAWVAATTEGVHIYSLDSGYVFD 286
L + VF + FSP AAT G+ ++SLD Y+ D
Sbjct: 225 MYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD 266
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 43 LSGHEGPVSCIEFSPVL----SSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVA 98
L GH VS + P S ++SA DK VK WN + + + I S+ +
Sbjct: 138 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 197
Query: 99 YKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDL 135
PDGT I A DG+++++++ + + ++ A+ ++
Sbjct: 198 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 234
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 92/222 (41%), Gaps = 30/222 (13%)
Query: 65 VSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESAA 124
+SASWDKT++LW+ +T + SD + V + I+ + D + ++ ++
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC 140
Query: 125 QVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSRE 184
L T L + + + V D I++AG K + ++
Sbjct: 141 ---------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN--- 182
Query: 185 GILLKKFTITQNKSLDGINDFINRRKMTEFGNVSLIETRETHEGGNVVLKLPGVKKGDMA 244
L +F I + G N IN +T + +LI + + G ++L KK A
Sbjct: 183 ---LNQFQIEAD--FIGHNSNIN--TLTASPDGTLIAS--AGKDGEIMLWNLAAKK---A 230
Query: 245 ARVLKPEVRVFCVKFSPTGQAWVAATTEGVHIYSLDSGYVFD 286
L + VF + FSP AAT G+ ++SLD Y+ D
Sbjct: 231 MYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD 272
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 43 LSGHEGPVSCIEFSPVL----SSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVA 98
L GH VS + P S ++SA DK VK WN + + + I S+ +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 99 YKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDL 135
PDGT I A DG+++++++ + + ++ A+ ++
Sbjct: 204 ASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 41/244 (16%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSD-ALCVAY 99
+ +SGH+ +S + +S S +VSAS DKT+K+W+ V + +T++ S+ C +
Sbjct: 81 KTISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNF 137
Query: 100 KPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTV 159
P IV + D + ++DV++ + ++ A D VS V
Sbjct: 138 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------------PVSAV 177
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSL 219
++ DGS I+++ I+ + G LK +D N ++ K + G L
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------IDDDNPPVSFVKFSPNGKYIL 230
Query: 220 IETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCV--KFSPTGQAWVAATTEG--VH 275
T + LKL KG + +C+ FS TG W+ + +E V+
Sbjct: 231 AATLDN------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 284
Query: 276 IYSL 279
I++L
Sbjct: 285 IWNL 288
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 105/244 (43%), Gaps = 41/244 (16%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSD-ALCVAY 99
+ +SGH+ +S + +S S +VSAS DKT+K+W+ V + +T++ S+ C +
Sbjct: 83 KTISGHKLGISDVAWSS--DSNLLVSASDDKTLKIWD-VSSGKCLKTLKGHSNYVFCCNF 139
Query: 100 KPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTV 159
P IV + D + ++DV++ + ++ A D VS V
Sbjct: 140 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--------------------PVSAV 179
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSL 219
++ DGS I+++ I+ + G LK +D N ++ K + G L
Sbjct: 180 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL-------IDDDNPPVSFVKFSPNGKYIL 232
Query: 220 IETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCV--KFSPTGQAWVAATTEG--VH 275
T + LKL KG + +C+ FS TG W+ + +E V+
Sbjct: 233 AATLDN------TLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 286
Query: 276 IYSL 279
I++L
Sbjct: 287 IWNL 290
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/263 (23%), Positives = 108/263 (41%), Gaps = 47/263 (17%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQ----LLSDALCVA 98
L+GH VS ++FSP + + S+S DK +K+W A + + +TI +SD VA
Sbjct: 22 LAGHTKAVSSVKFSP--NGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISD---VA 75
Query: 99 YKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRD-------------LDSGRLD---- 141
+ D +V A+ D L ++DV S + +++ + + SG D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVR 135
Query: 142 -----TDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSREGILLKKFTITQN 196
T + + + VS V ++ DGS I+++ I+ + G LK
Sbjct: 136 IWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL----- 190
Query: 197 KSLDGINDFINRRKMTEFGNVSLIETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFC 256
+D N ++ K + G L T + LKL KG + +C
Sbjct: 191 --IDDDNPPVSFVKFSPNGKYILAATLDND------LKLWDYSKGKCLKTYTGHKNEKYC 242
Query: 257 V--KFSPTGQAWVAATTEGVHIY 277
+ FS TG W+ + +E +Y
Sbjct: 243 IFANFSVTGGKWIVSGSEDNMVY 265
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALC-VAY 99
+ L H PVS + F+ + +VS+S+D ++W+ I + + V +
Sbjct: 146 KTLPAHSDPVSAVHFN--RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 100 KPDGTEIVVATLDGQLIMFD 119
P+G I+ ATLD L ++D
Sbjct: 204 SPNGKYILAATLDNDLKLWD 223
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 44/244 (18%)
Query: 43 LSGHEGPVSCIEFSPVLSSTG--MVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYK 100
L GH VS + LS+ G VSASWD +++LWN Q++ + D L VA+
Sbjct: 63 LEGHSAFVSDV----ALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFS 118
Query: 101 PDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVC 160
PD +IV D L +++V+ + T + VS V
Sbjct: 119 PDNRQIVSGGRDNALRVWNVKGEC-------------------MHTLSRGAHTDWVSCVR 159
Query: 161 YSA--DGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVS 218
+S D I++ G + ++ G L+ L G +++ ++ G++
Sbjct: 160 FSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD--------LKGHTNYVTSVTVSPDGSLC 211
Query: 219 LIETRETHEGGNVVLKLPGVKKGD-MAARVLKPEVRVFCVKFSPTGQAWVAATTEGVHIY 277
++ V +L + KG+ ++ + C FSP AAT +G+ I+
Sbjct: 212 ASSDKDG------VARLWDLTKGEALSEMAAGAPINQIC--FSPNRYWMCAATEKGIRIF 263
Query: 278 SLDS 281
L++
Sbjct: 264 DLEN 267
>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
Phosphonate Inhibitor
Length = 377
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 516 IQLKSTRMNELGLYDTTATIDYILNQTGHNSLITLGHSLGTTNVLIAGSLRPEYQTKVR 574
++ + +E+ YD ATID+IL +TG + L +GHS GTT IA S P+ +++
Sbjct: 116 VEFWAFSFDEMAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIK 174
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 600 IYALNIFQVGLYDTTATIDYILNQTGHNSLITLGHSLGTTNVLIAGSLRPEYQTKVR 656
+A + ++ YD ATID+IL +TG + L +GHS GTT IA S P+ +++
Sbjct: 118 FWAFSFDEMAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIK 174
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 426 GYDIWLWNARGNVYSREHVNLTSEQNKFYRFSCD 459
GYD+WL N+RGN ++R ++ + + +F+ FS D
Sbjct: 91 GYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFD 124
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 90/222 (40%), Gaps = 30/222 (13%)
Query: 65 VSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESAA 124
+SASWDKT++LW+ +T + SD V + I+ + D + ++ ++
Sbjct: 81 LSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQC 140
Query: 125 QVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSRE 184
L T L + + + V D I++AG K + ++
Sbjct: 141 ---------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWN--- 182
Query: 185 GILLKKFTITQNKSLDGINDFINRRKMTEFGNVSLIETRETHEGGNVVLKLPGVKKGDMA 244
L +F I + G N IN +T + +LI + + G + L KK A
Sbjct: 183 ---LNQFQIEAD--FIGHNSNIN--TLTASPDGTLIAS--AGKDGEIXLWNLAAKK---A 230
Query: 245 ARVLKPEVRVFCVKFSPTGQAWVAATTEGVHIYSLDSGYVFD 286
L + VF + FSP AAT G+ ++SLD Y+ D
Sbjct: 231 XYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVD 272
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 43 LSGHEGPVSCIEFSPVL----SSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVA 98
L GH VS + P S ++SA DK VK WN + + + I S+ +
Sbjct: 144 LLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLT 203
Query: 99 YKPDGTEIVVATLDGQLIMFDVES 122
PDGT I A DG++ ++++ +
Sbjct: 204 ASPDGTLIASAGKDGEIXLWNLAA 227
>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
Length = 371
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 516 IQLKSTRMNELGLYDTTATIDYILNQTGHNSLITLGHSLGTTNVLIAGSLRPEYQTKVR 574
++ + +E+ YD ATID+I+ +TG L +GHS GTT IA S P +++
Sbjct: 108 VEFWAFSFDEMAKYDLPATIDFIVKKTGQKQLHYVGHSQGTTIGFIAFSTNPSLAKRIK 166
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%)
Query: 600 IYALNIFQVGLYDTTATIDYILNQTGHNSLITLGHSLGTTNVLIAGSLRPEYQTKVR 656
+A + ++ YD ATID+I+ +TG L +GHS GTT IA S P +++
Sbjct: 110 FWAFSFDEMAKYDLPATIDFIVKKTGQKQLHYVGHSQGTTIGFIAFSTNPSLAKRIK 166
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (70%)
Query: 426 GYDIWLWNARGNVYSREHVNLTSEQNKFYRFSCD 459
GYD+WL N+RGN ++R ++ + + +F+ FS D
Sbjct: 83 GYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFD 116
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 76/171 (44%), Gaps = 27/171 (15%)
Query: 26 PGVKKGDMAARVLKPE---VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETD 82
P +K D + +P LSGH PV+ + F PV S MVSAS D T+K+W+ ET
Sbjct: 84 PLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSV--MVSASEDATIKVWD-YETG 140
Query: 83 TQHETIQLLSDALC-VAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLD 141
T++ +D++ +++ G + + D + ++D + + ++
Sbjct: 141 DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGH--------- 191
Query: 142 TDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSREGILLKKFT 192
VS+V +G I++A + K I ++ + G +K FT
Sbjct: 192 -----------DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 231
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYK 100
+ L+GH VS + S + +S+SWDKT++LW+ T + S+ VA+
Sbjct: 70 KALTGHNHFVSDLALSQ--ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFS 127
Query: 101 PDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLD 136
PD +I+ A + ++ ++++ + S E D
Sbjct: 128 PDNRQILSAGAEREIKLWNILGECKFSSAEKENHSD 163
Score = 38.1 bits (87), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 34/111 (30%)
Query: 46 HEGPVSCIEFSPVLSSTGMV--------SASWDKTVKLWN----------AVETDTQHET 87
H VSC+ +SP++ S V S WD +K+WN A E++ H +
Sbjct: 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLS 220
Query: 88 IQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSG 138
I P+G I D +L+++D+ + +R+ D+G
Sbjct: 221 IS-----------PNGKYIATGGKDKKLLIWDI-----LNLTYPQREFDAG 255
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 6/98 (6%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYK 100
VL GH V C+++ +VS ++D VK+W+ ET+T T+Q ++ + + +
Sbjct: 233 HVLMGHVAAVRCVQYD----GRRVVSGAYDFMVKVWDP-ETETCLHTLQGHTNRV-YSLQ 286
Query: 101 PDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSG 138
DG +V +LD + ++DVE+ + ++ + L SG
Sbjct: 287 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSG 324
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPD 102
L GH G V +S + ++S S D+T+K+WNA + H S C+
Sbjct: 155 LVGHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE- 209
Query: 103 GTEIVVATLDGQLIMFDVESA 123
+V + D L ++D+E+
Sbjct: 210 -KRVVSGSRDATLRVWDIETG 229
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 32/52 (61%), Gaps = 9/52 (17%)
Query: 29 KKGDMAARVLKPEVLSGHEGPV-SCIEFSPVLSSTGMVSASWDKTVKLWNAV 79
++G++ + P+VL GH+ V +C++F +VS S D T+K+W+AV
Sbjct: 104 RRGELKS----PKVLKGHDDHVITCLQFC----GNRIVSGSDDNTLKVWSAV 147
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/141 (22%), Positives = 67/141 (47%), Gaps = 17/141 (12%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKP 101
+L GHE + +++ P S +VS S D+TV++W+ + T T+ + VA P
Sbjct: 160 ILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWD-LRTGQCSLTLSIEDGVTTVAVSP 216
Query: 102 -DGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVC 160
DG I +LD + ++D E+ V +++ + +G D+ V +V
Sbjct: 217 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS-------------VYSVV 263
Query: 161 YSADGSCILAAGQSKYICIYS 181
++ DG +++ + + +++
Sbjct: 264 FTRDGQSVVSGSLDRSVKLWN 284
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYK 100
L GH G V ++++P +VSAS D + +WNA+ + H + A+
Sbjct: 60 RTLQGHSGKVYSLDWTP--EKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 101 PDGTEIVVATLDGQLIMFDVESAA 124
P+G + LD +F++ S A
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQA 141
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 11 ETRETHEGGNVVLKLPGVKKGDMAARVLKPEVLSGHEGPVSCIEFSPVLSSTGMVSASWD 70
ETR G+ L V G + + E SGH V + + L++ +S S D
Sbjct: 170 ETRLITGSGDQTCVLWDVTTGQRIS-IFGSEFPSGHTADVLSLSINS-LNANMFISGSCD 227
Query: 71 KTVKLWN------AVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESAA 124
TV+LW+ AV T HE D V + PDG + DG +FD+ +
Sbjct: 228 TTVRLWDLRITSRAVRTYHGHE-----GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH 282
Query: 125 QV 126
Q+
Sbjct: 283 QL 284
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 46 HEGPVSCIEFSPVLSSTGMVSASWDKTVKLW 76
HEG +SC+ S + + + SWDK +K+W
Sbjct: 343 HEGRISCLGLSS--DGSALCTGSWDKNLKIW 371
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 46 HEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTE 105
H V+C F+ + + + S D +KLW+ + + ++ + + PD
Sbjct: 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 757
Query: 106 IVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVC-YSAD 164
+ + DG L ++DV SA + S+ +R L + + + + C +SAD
Sbjct: 758 LASCSADGTLRLWDVRSANERKSINVKRFF--------LSSEDPPEDVEVIVKCCSWSAD 809
Query: 165 GSCILAAGQSKYICIYSSREGIL 187
G I+ A ++K + G+L
Sbjct: 810 GDKIIVAAKNKVLLFDIHTSGLL 832
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPD 102
+ H+G V S +T S S DKT K+W+ HE C A+ D
Sbjct: 1081 FTCHQGTVLSCAISS--DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138
Query: 103 GTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYS 162
G + +G++ +++V + S A ++ G + V+ VC+S
Sbjct: 1139 GILLATGDDNGEIRIWNVSDGQLLHSC-APISVEEG----------TATHGGWVTDVCFS 1187
Query: 163 ADGSCILAAG 172
D +++AG
Sbjct: 1188 PDSKTLVSAG 1197
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 46 HEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTE 105
H V+C F+ + + + S D +KLW+ + + ++ + + PD
Sbjct: 705 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDEL 764
Query: 106 IVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVC-YSAD 164
+ + DG L ++DV SA + S+ +R L + + + + C +SAD
Sbjct: 765 LASCSADGTLRLWDVRSANERKSINVKRFF--------LSSEDPPEDVEVIVKCCSWSAD 816
Query: 165 GSCILAAGQSKYICIYSSREGIL 187
G I+ A ++K + G+L
Sbjct: 817 GDKIIVAAKNKVLLFDIHTSGLL 839
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 52/130 (40%), Gaps = 13/130 (10%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPD 102
+ H+G V S +T S S DKT K+W+ HE C A+ D
Sbjct: 1088 FTCHQGTVLSCAISS--DATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1145
Query: 103 GTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYS 162
G + +G++ +++V + S A ++ G + V+ VC+S
Sbjct: 1146 GILLATGDDNGEIRIWNVSDGQLLHSC-APISVEEG----------TATHGGWVTDVCFS 1194
Query: 163 ADGSCILAAG 172
D +++AG
Sbjct: 1195 PDSKTLVSAG 1204
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 41 EVLSGHEGPVSCIEFSP-VLSSTGMVSASWDKTVKLWNAVETDTQHETIQLL--SDALCV 97
EV S + + C+ FSP L +++ SW V+ W ++ Q + L V
Sbjct: 33 EVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDV 92
Query: 98 AYKPDGTEIVVATLDGQLIMFDVES--AAQVGSVEA 131
+ DG+++ A+ D M+D+ S A Q+ +A
Sbjct: 93 CWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDA 128
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALC--VAYK 100
++ H+ PV I + + + +++ SWDKT+K W+ ++ +QL C V Y
Sbjct: 123 IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM-MVLQLPERCYCADVIYP 181
Query: 101 PDGTEIVVATLDGQLIMFDVES 122
VVAT + LI++ +E+
Sbjct: 182 ----MAVVATAERGLIVYQLEN 199
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 59/133 (44%), Gaps = 13/133 (9%)
Query: 46 HEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTE 105
H V+C F+ + + S D +KLW+ + + ++ + + PD
Sbjct: 704 HSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKL 763
Query: 106 IVVATLDGQLIMFDVESAAQVGSVEARR---DLDSGRLDTDLVTREQSLKAKAVSTVCYS 162
+ + DG L ++D SA + S+ ++ +L+ + D +++ V +S
Sbjct: 764 LASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVI----------VKCCSWS 813
Query: 163 ADGSCILAAGQSK 175
ADG+ I+ A ++K
Sbjct: 814 ADGARIMVAAKNK 826
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 14/127 (11%)
Query: 46 HEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTE 105
H+G V + S +T S S DKT K+W+ HE C A+ D T
Sbjct: 1090 HQGTVLSCDISH--DATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTL 1147
Query: 106 IVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYSADG 165
+ +G++ +++V + + L L + V+ +C+S DG
Sbjct: 1148 LATGDDNGEIRIWNVSNGELL------------HLCAPLSEEGAATHGGWVTDLCFSPDG 1195
Query: 166 SCILAAG 172
+++AG
Sbjct: 1196 KMLISAG 1202
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 26/168 (15%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLS-DALCVAYKP 101
L GH+ V ++ S L S+S D ++LW+ +E Q ++I DA +A+ P
Sbjct: 76 LEGHQLGVVSVDISHTLPIA--ASSSLDAHIRLWD-LENGKQIKSIDAGPVDAWTLAFSP 132
Query: 102 DGTEIVVATLDGQLIMFDVESAAQVGSVEAR-------------RDLDSGRLDT-----D 143
D + T G++ +F VES + S++ R + L SG +D D
Sbjct: 133 DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFD 192
Query: 144 LVTRE--QSLKAKA--VSTVCYSADGSCILAAGQSKYICIYSSREGIL 187
+ T + +L+ A + ++ +S D ++ A YI IY + L
Sbjct: 193 IATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL 240
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 59/140 (42%), Gaps = 22/140 (15%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYK 100
L GH P+ + FSP S +V+AS D +K+++ + S L VA+
Sbjct: 200 HTLEGHAMPIRSLTFSP--DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257
Query: 101 PDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVC 160
PD T V ++ D + ++DV + V + +D V V
Sbjct: 258 PDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--------------------QVWGVK 297
Query: 161 YSADGSCILAAGQSKYICIY 180
Y+ +GS I++ G + I IY
Sbjct: 298 YNGNGSKIVSVGDDQEIHIY 317
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPD 102
L GH V C+++ +VS+S D V +W++ T+ +H + + AY P
Sbjct: 60 LKGHGNKVLCMDWCK--DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 103 GTEIVVATLDGQLIMF 118
G I LD + ++
Sbjct: 118 GCAIACGGLDNKCSVY 133
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 10/91 (10%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWN-----AVETDTQHETIQLLSDAL 95
+ GH V C++ +P + VS DK +W+ V+ HE SD
Sbjct: 190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHE-----SDVN 244
Query: 96 CVAYKPDGTEIVVATLDGQLIMFDVESAAQV 126
V Y P G + D ++D+ + +V
Sbjct: 245 SVRYYPSGDAFASGSDDATCRLYDLRADREV 275
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLW 76
+L GHE VS + SP T S SWD T+++W
Sbjct: 321 ILFGHENRVSTLRVSP--DGTAFCSGSWDHTLRVW 353
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYK 100
VL GH V+ ++F +VSAS D+T+K+WN + C+ Y+
Sbjct: 250 RVLVGHRAAVNVVDFD----DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR 305
Query: 101 PDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDL 135
+V + D + ++D+E A + +E +L
Sbjct: 306 --DRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL 338
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAV 79
VL GHE V CI F + +VS ++D +K+W+ V
Sbjct: 330 RVLEGHEELVRCIRF----DNKRIVSGAYDGKIKVWDLV 364
>pdb|1THT|A Chain A, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
pdb|1THT|B Chain B, Structure Of A Myristoyl-Acp-Specific Thioesterase From
Vibrio Harveyi
Length = 305
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 63/153 (41%), Gaps = 19/153 (12%)
Query: 545 NSLITLGHSLGTTN--VLIAGSLRPEYQTKVRLNVLWAQSAFLGNLVTKDMLEGLYGIYA 602
N T+ H L N L P+ + N + S F + D GL +
Sbjct: 3 NQCKTIAHVLRVNNGQELHVWETPPKENVPFKNNTILIASGFARRM---DHFAGLAEYLS 59
Query: 603 LNIFQVGLYDT-------TATIDYILNQTGHNSLITLGHSL---GTTNV-LIAGSL--RP 649
N F V YD+ + +ID TG NSL T+ H L GT N+ LIA SL R
Sbjct: 60 TNGFHVFRYDSLHHVGLSSGSIDEFTMTTGKNSLCTVYHWLQTKGTQNIGLIAASLSARV 119
Query: 650 EYQTKVRLNVLWAQSAFLGNLVTRDMLEGLYGI 682
Y+ L + + +A +G + RD LE G
Sbjct: 120 AYEVISDLELSFLITA-VGVVNLRDTLEKALGF 151
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLW-------NAVETDTQHETIQLLSD 93
+ GHE V C+ F+P ST S D+TVK+W N T Q + + D
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPST-FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV-D 191
Query: 94 ALCVAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEAR 132
+ PD ++ A+ D + ++D ++ + V ++E
Sbjct: 192 YYPL---PDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 44 SGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQ-LLSDALCVAYKPD 102
+G E V+ +++ P+ M++AS D T+K+W+ +T + T++ +S+ + P
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD-YQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 103 GTEIVVATLDGQLIMFD-----VESAAQVG 127
I+ + DG L +++ VE VG
Sbjct: 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLW-------NAVETDTQHETIQLLSD 93
+ GHE V C+ F+P ST S D+TVK+W N T Q + + D
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPST-FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV-D 191
Query: 94 ALCVAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEAR 132
+ PD ++ A+ D + ++D ++ + V ++E
Sbjct: 192 YYPL---PDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 44 SGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQ-LLSDALCVAYKPD 102
+G E V+ +++ P+ M++AS D T+K+W+ +T + T++ +S+ + P
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD-YQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 103 GTEIVVATLDGQLIMFD-----VESAAQVG 127
I+ + DG L +++ VE VG
Sbjct: 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLW-------NAVETDTQHETIQLLSD 93
+ GHE V C+ F+P ST S D+TVK+W N T Q + + D
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPST-FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV-D 191
Query: 94 ALCVAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEAR 132
+ PD ++ A+ D + ++D ++ + V ++E
Sbjct: 192 YYPL---PDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 44 SGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQ-LLSDALCVAYKPD 102
+G E V+ +++ P+ M++AS D T+K+W+ +T + T++ +S+ + P
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD-YQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 103 GTEIVVATLDGQLIMFD-----VESAAQVG 127
I+ + DG L +++ VE VG
Sbjct: 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 32.7 bits (73), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLW-------NAVETDTQHETIQLLSD 93
+ GHE V C+ F+P ST S D+TVK+W N T Q + + D
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPST-FASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYV-D 191
Query: 94 ALCVAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEAR 132
+ PD ++ A+ D + ++D ++ + V ++E
Sbjct: 192 YYPL---PDKPYMITASDDLTIKIWDYQTKSCVATLEGH 227
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 44 SGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQ-LLSDALCVAYKPD 102
+G E V+ +++ P+ M++AS D T+K+W+ +T + T++ +S+ + P
Sbjct: 181 TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD-YQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 103 GTEIVVATLDGQLIMFD-----VESAAQVG 127
I+ + DG L +++ VE VG
Sbjct: 240 LPIIISGSEDGTLKIWNSSTYKVEKTLNVG 269
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 32.3 bits (72), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 45 GHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGT 104
GHE V CI+ P + +VS D+TV++W+ E + + I L + ++
Sbjct: 223 GHESFVYCIKLLP---NGDIVSCGEDRTVRIWSK-ENGSLKQVITLPAISIWSVDCXSNG 278
Query: 105 EIVVATLDGQLIMFDVESAAQVGSVEARRDLDSG 138
+I+V + D + +F E + E + +L SG
Sbjct: 279 DIIVGSSDNLVRIFSQEKSRWASEDEIKGELRSG 312
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLW 76
L GH+G V + F + ++S SWDKT K+W
Sbjct: 100 LIGHQGNVCSLSFQDGV----VISGSWDKTAKVW 129
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 34 AARVLKPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWN 77
A + + VL+GH+ VSC+ + + + SWD +K+WN
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFLKIWN 340
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 64 MVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESA 123
++SAS D + +W++ T+ H S + AY P G + LD ++++++
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT- 128
Query: 124 AQVGSVEARRDL 135
+ G+V R+L
Sbjct: 129 -REGNVRVSREL 139
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 38 LKPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCV 97
L+ E+ H ++ ++F P S ++S+S D +K+W+ + I + +
Sbjct: 130 LQREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI 187
Query: 98 AYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSG------RLDTDLVTREQSL 151
A G ++ A+LDG + +++ + + + + + G + TD E S
Sbjct: 188 AIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIST 247
Query: 152 KAKAVSTVCYSADGSCILAAGQSKYICIYS--SREGI--LLKKFTITQNK-SLDGIN 203
K + + + G ++A S I +++ S+E L KFT + N ++DG N
Sbjct: 248 SKK--NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN 302
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 34 AARVLKPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWN 77
A + + VL+GH+ VSC+ + + + SWD +K+WN
Sbjct: 310 ALKADRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFLKIWN 351
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 64 MVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESA 123
+VSAS D + +W++ T+ H S + AY P G + LD ++++++
Sbjct: 81 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT- 139
Query: 124 AQVGSVEARRDL 135
+ G+V R+L
Sbjct: 140 -REGNVRVSREL 150
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 34 AARVLKPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWN 77
A + + VL+GH+ VSC+ + + + SWD +K+WN
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFLKIWN 340
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 64 MVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESA 123
+VSAS D + +W++ T+ H S + AY P G + LD ++++++
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT- 128
Query: 124 AQVGSVEARRDL 135
+ G+V R+L
Sbjct: 129 -REGNVRVSREL 139
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 78/177 (44%), Gaps = 15/177 (8%)
Query: 38 LKPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCV 97
L+ E+ H ++ ++F P S ++S+S D +K+W+ + I + +
Sbjct: 127 LQREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDI 184
Query: 98 AYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSG------RLDTDLVTREQSL 151
A G ++ A+LDG + +++ + + + + + G + TD E S
Sbjct: 185 AIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEIST 244
Query: 152 KAKAVSTVCYSADGSCILAAGQSKYICIYS--SREGI--LLKKFTITQNK-SLDGIN 203
K + + + G ++A S I +++ S+E L KFT + N ++DG N
Sbjct: 245 SKK--NNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN 299
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 34 AARVLKPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWN 77
A + + VL+GH+ VSC+ + + + SWD +K+WN
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFLKIWN 340
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 64 MVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESA 123
+VSAS D + +W++ T+ H S + AY P G + LD ++++++
Sbjct: 70 LVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT- 128
Query: 124 AQVGSVEARRDL 135
+ G+V R+L
Sbjct: 129 -REGNVRVSREL 139
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 34 AARVLKPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWN 77
A + + VL+GH+ VSC+ + + + SWD +K+WN
Sbjct: 299 ALKADRAGVLAGHDNRVSCLGVTD--DGMAVATGSWDSFLKIWN 340
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 64 MVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESA 123
++SAS D + +W++ T+ H S + AY P G + LD ++++++
Sbjct: 70 LLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT- 128
Query: 124 AQVGSVEARRDL 135
+ G+V R+L
Sbjct: 129 -REGNVRVSREL 139
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPD 102
L GH GP+S +EF+ ++ ++SAS D T+++W+ ++Q+ S ++ A
Sbjct: 243 LIGHHGPISVLEFND--TNKLLLSASDDGTLRIWHGGNGNSQN-CFYGHSQSIVSASWVG 299
Query: 103 GTEIVVATLDGQLIMFDVE 121
+++ ++DG + ++ ++
Sbjct: 300 DDKVISCSMDGSVRLWSLK 318
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 39 KP-EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALC- 96
KP ++ H V+C+ F+P S + + S DKTV LW+ + T + D +
Sbjct: 266 KPSHLVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQ 324
Query: 97 VAYKPDGTEIVVAT-LDGQLIMFDVESAAQVGSVEARRDLDSG 138
V + P I+ ++ D +L ++D+ +++G ++ D + G
Sbjct: 325 VHWSPHNETILASSGTDRRLNVWDL---SKIGEEQSAEDAEDG 364
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 39 KP-EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALC- 96
KP ++ H V+C+ F+P S + + S DKTV LW+ + T + D +
Sbjct: 266 KPSHLVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQ 324
Query: 97 VAYKPDGTEIVVAT-LDGQLIMFDVESAAQVGSVEARRDLDSG 138
V + P I+ ++ D +L ++D+ +++G ++ D + G
Sbjct: 325 VHWSPHNETILASSGTDRRLNVWDL---SKIGEEQSAEDAEDG 364
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 67/157 (42%), Gaps = 21/157 (13%)
Query: 46 HEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTE 105
H G V + +SP T + SAS DKT+K+WN V T +TI P GT
Sbjct: 238 HSGSVFGLTWSP--DGTKIASASADKTIKIWN-VATLKVEKTI------------PVGTR 282
Query: 106 IVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYSADG 165
I D QL + + A + S+ A ++ + + + + KA++ + SADG
Sbjct: 283 I----EDQQLGIIWTKQA--LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG 336
Query: 166 SCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGI 202
+ +A +I + GI + F + GI
Sbjct: 337 KTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 373
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDAL--CVA 98
+ L+GHEGPV ++++ T + S S+D V +W + + A V
Sbjct: 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQ 106
Query: 99 YKPD--GTEIVVATLDGQL 115
+ P G ++VA+ DG++
Sbjct: 107 WAPHEYGPXLLVASSDGKV 125
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 9/63 (14%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAV--ETDTQHETIQLLSDALCVAY 99
VL+GHEG V +F + S S D TV++W + + D Q E + C A
Sbjct: 192 VLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV-------CEAI 244
Query: 100 KPD 102
PD
Sbjct: 245 LPD 247
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDAL--CVA 98
+ L+GHEGPV ++++ T + S S+D V +W + + A V
Sbjct: 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQ 106
Query: 99 YKPD--GTEIVVATLDGQL 115
+ P G ++VA+ DG++
Sbjct: 107 WAPHEYGPLLLVASSDGKV 125
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDAL--CVA 98
+ L+GHEGPV ++++ T + S S+D V +W + + A V
Sbjct: 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQ 106
Query: 99 YKPD--GTEIVVATLDGQL 115
+ P G ++VA+ DG++
Sbjct: 107 WAPHEYGPMLLVASSDGKV 125
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 29.6 bits (65), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDAL--CVA 98
+ L+GHEGPV ++++ T + S S+D V +W + + A V
Sbjct: 49 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQ 108
Query: 99 YKPD--GTEIVVATLDGQL 115
+ P G ++VA+ DG++
Sbjct: 109 WAPHEYGPLLLVASSDGKV 127
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 29.3 bits (64), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDAL--CVA 98
+ L+GHEGPV ++++ T + S S+D V +W + + A V
Sbjct: 47 DTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQ 106
Query: 99 YKPD--GTEIVVATLDGQL 115
+ P G ++VA+ DG++
Sbjct: 107 WAPHEYGPLLLVASSDGKV 125
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 29.3 bits (64), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLW----NAVETDTQHETIQLLSDALCVA 98
L GHEGPV + ++ + + S S+D+ V +W E +H +++C A
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWA 112
Query: 99 YKPDGTEIVVATLDGQLIMF 118
G + + DG + +
Sbjct: 113 PHDYGLILACGSSDGAISLL 132
>pdb|3IM8|A Chain A, Crystal Structure Of Mcat From Streptococcus Pneumoniae
Length = 307
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 31/62 (50%)
Query: 501 RVLDEDVPRSSDTGDIQLKSTRMNELGLYDTTATIDYILNQTGHNSLITLGHSLGTTNVL 560
+VL D+ DT + +L TR + + T+ I +L + G+ + G SLG + L
Sbjct: 38 QVLGYDLRYLIDTEEDKLNQTRYTQPAILATSVAIYRLLQEKGYQPDMVAGLSLGEYSAL 97
Query: 561 IA 562
+A
Sbjct: 98 VA 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,223,599
Number of Sequences: 62578
Number of extensions: 757965
Number of successful extensions: 2242
Number of sequences better than 100.0: 70
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 1976
Number of HSP's gapped (non-prelim): 205
length of query: 703
length of database: 14,973,337
effective HSP length: 106
effective length of query: 597
effective length of database: 8,340,069
effective search space: 4979021193
effective search space used: 4979021193
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)