RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy7108
(703 letters)
>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic
proteins that cover a wide variety of functions
including adaptor/regulatory modules in signal
transduction, pre-mRNA processing and cytoskeleton
assembly; typically contains a GH dipeptide 11-24
residues from its N-terminus and the WD dipeptide at its
C-terminus and is 40 residues long, hence the name WD40;
between GH and WD lies a conserved core; serves as a
stable propeller-like platform to which proteins can
bind either stably or reversibly; forms a propeller-like
structure with several blades where each blade is
composed of a four-stranded anti-parallel b-sheet;
instances with few detectable copies are hypothesized to
form larger structures by dimerization; each WD40
sequence repeat forms the first three strands of one
blade and the last strand in the next blade; the last
C-terminal WD40 repeat completes the blade structure of
the first WD40 repeat to create the closed ring
propeller-structure; residues on the top and bottom
surface of the propeller are proposed to coordinate
interactions with other proteins and/or small ligands; 7
copies of the repeat are present in this alignment.
Length = 289
Score = 74.3 bits (183), Expect = 2e-14
Identities = 53/261 (20%), Positives = 96/261 (36%), Gaps = 75/261 (28%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDAL-CVAYK 100
L GH G V+C+ FSP + + S D T+K+W+ +ET T++ + + VA
Sbjct: 4 TLKGHTGGVTCVAFSP--DGKLLATGSGDGTIKVWD-LETGELLRTLKGHTGPVRDVAAS 60
Query: 101 PDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVC 160
DGT + + D + ++D L+T R + VS+V
Sbjct: 61 ADGTYLASGSSDKTIRLWD--------------------LETGECVRTLTGHTSYVSSVA 100
Query: 161 YSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNV--- 217
+S DG + ++ + K I ++ G +L G D++N + G
Sbjct: 101 FSPDGRILSSSSRDKTIKVWDVETG--------KCLTTLRGHTDWVNSVAFSPDGTFVAS 152
Query: 218 ---------------SLIETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFCVKFSPT 262
+ T H G V V FSP
Sbjct: 153 SSQDGTIKLWDLRTGKCVATLTGHTGE------------------------VNSVAFSPD 188
Query: 263 GQAWVAATTEG-VHIYSLDSG 282
G+ ++++++G + ++ L +G
Sbjct: 189 GEKLLSSSSDGTIKLWDLSTG 209
Score = 71.6 bits (176), Expect = 1e-13
Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 32/156 (20%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNA-----VETDTQHETIQLLSDALC 96
L GH V+ + FSP T + S+S D T+KLW+ V T T H +
Sbjct: 130 TLRGHTDWVNSVAFSP--DGTFVASSSQDGTIKLWDLRTGKCVATLTGHT-----GEVNS 182
Query: 97 VAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAV 156
VA+ PDG +++ ++ DG + ++D+ + +G++ + V
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--------------------GV 222
Query: 157 STVCYSADGSCILAAGQSKYICIYSSREGILLKKFT 192
++V +S DG + + + I ++ R G ++ +
Sbjct: 223 NSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258
Score = 68.5 bits (168), Expect = 1e-12
Identities = 57/264 (21%), Positives = 106/264 (40%), Gaps = 49/264 (18%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQL-LSDALCVAYKP 101
L GH GPV + S T + S S DKT++LW+ +ET T+ S VA+ P
Sbjct: 47 LKGHTGPVRDVAASA--DGTYLASGSSDKTIRLWD-LETGECVRTLTGHTSYVSSVAFSP 103
Query: 102 DGTEIVVATLDGQLIMFDVESAAQVGSVEARRD-------------LDSGRLDT-----D 143
DG + ++ D + ++DVE+ + ++ D + S D D
Sbjct: 104 DGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWD 163
Query: 144 LVTRE--QSLKA--KAVSTVCYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSL 199
L T + +L V++V +S DG +L++ I ++ G L +L
Sbjct: 164 LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL--------GTL 215
Query: 200 DGINDFINRRKMTEFGNVSLIETRE----THEGGNVVLKLPGVKKGDMAARVLKPEVRVF 255
G + +N +V+ E G + ++ ++ G+ + V
Sbjct: 216 RGHENGVN--------SVAFSPDGYLLASGSEDGTI--RVWDLRTGECVQTLSGHTNSVT 265
Query: 256 CVKFSPTGQAWVAATTEG-VHIYS 278
+ +SP G+ + + +G + I+
Sbjct: 266 SLAWSPDGKRLASGSADGTIRIWD 289
Score = 56.2 bits (136), Expect = 2e-08
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 24/141 (17%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDAL-CVAYK 100
L+GH G V+ + FSP ++S+S D T+KLW+ + T T++ + + VA+
Sbjct: 172 TLTGHTGEVNSVAFSP--DGEKLLSSSSDGTIKLWD-LSTGKCLGTLRGHENGVNSVAFS 228
Query: 101 PDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVC 160
PDG + + DG + ++D+ + V ++ +V+++
Sbjct: 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSG--------------------HTNSVTSLA 268
Query: 161 YSADGSCILAAGQSKYICIYS 181
+S DG + + I I+
Sbjct: 269 WSPDGKRLASGSADGTIRIWD 289
>gnl|CDD|217837 pfam04003, Utp12, Dip2/Utp12 Family. This domain is found at the
C-terminus of proteins containing WD40 repeats. These
proteins are part of the U3 ribonucleoprotein the yeast
protein is called Utp12 or DIP2.
Length = 109
Score = 66.1 bits (162), Expect = 3e-13
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 8/95 (8%)
Query: 319 NEQGLIIHVLENIRTRDIALTVRSLAEIYLEKLLKFIAAML--EVSKHIEFYVSWVSQIL 376
NE+ LI+ VLE I DI LT+ SL Y+ +LL+F+A L E S H+EF + W+ +L
Sbjct: 1 NEEELILKVLEKIPPSDIELTLLSLPFSYVLRLLEFLAERLQAERSPHLEFLLRWLKFLL 60
Query: 377 MV----LKS-PS-QTTLVHLQRNLNKKYSDLAKIS 405
+ L S P+ L LQ+ L ++ DL +
Sbjct: 61 RIHGKYLVSNPNLLPQLRSLQKVLRRRVKDLRDLL 95
>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction
only].
Length = 466
Score = 59.3 bits (142), Expect = 3e-09
Identities = 34/157 (21%), Positives = 67/157 (42%), Gaps = 20/157 (12%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKP 101
L+GH PVS + FSP + S S D T++LW+ T+ SD++ ++ P
Sbjct: 193 TLAGHTDPVSSLAFSPDGGLL-IASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP 251
Query: 102 DGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCY 161
DG+ + + DG + ++D+ S++ + + +V +V +
Sbjct: 252 DGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHS-------------------SSVLSVAF 292
Query: 162 SADGSCILAAGQSKYICIYSSREGILLKKFTITQNKS 198
S DG + + + ++ G LL T+ ++
Sbjct: 293 SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG 329
Score = 48.9 bits (115), Expect = 6e-06
Identities = 74/428 (17%), Positives = 141/428 (32%), Gaps = 62/428 (14%)
Query: 36 RVLKPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDAL 95
L +L GHE ++ I FSP ++S S D T+KLW+ + ++++ L D+
Sbjct: 54 PDLSSLLLRGHEDSITSIAFSP--DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSS 111
Query: 96 CVAYK---PDGTEIVVAT--LDGQLIMFDVESAAQ-----------VGSVEARRDLDSG- 138
PDG I++A+ LDG + ++D+ + + V S+ D
Sbjct: 112 VSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLA 171
Query: 139 ------------RLDTDLVTREQSLKAKAVSTVCYSADGSCILA-AGQSKYICIYSSREG 185
L T + VS++ +S DG ++A I ++ G
Sbjct: 172 SGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTG 231
Query: 186 ILLKKFTITQNKSLDGINDFINRRKMTEFGNV-SLIETRETHEGGNVVLKLPGVKKGDMA 244
LL+ + S ++ F + G+ I + +++ L G
Sbjct: 232 KLLR--STLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSG------- 282
Query: 245 ARVLKPEVRVFCVKFSPTGQAWVAATTEG-VHIYSLDSGYVFDPFLL--------DISIT 295
V V FSP G+ + +++G V ++ L++G + L +S +
Sbjct: 283 -----HSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFS 337
Query: 296 PQSVKEALADKDYAKALMMSLKLNEQGLIIHVLENIRTRDIALTVRSLA------EIYLE 349
P D + L+ + + N+ + + R ++ + L
Sbjct: 338 PDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLW 397
Query: 350 KLLKFIAAMLEVSKHIEFYVSWVSQILMVLKSPSQTTLVHLQRNLNKKYSDLAKISCQFD 409
L S L S S + L S +
Sbjct: 398 DLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVL 457
Query: 410 DTKFLPPT 417
+K +
Sbjct: 458 ASKSSDLS 465
Score = 47.8 bits (112), Expect = 2e-05
Identities = 36/172 (20%), Positives = 74/172 (43%), Gaps = 22/172 (12%)
Query: 36 RVLKPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDAL 95
++L L GHEGPVS + FSP S + S D T++LW+ + T +T++ S+ L
Sbjct: 317 KLLSSLTLKGHEGPVSSLSFSPDGSLL-VSGGSDDGTIRLWD-LRTGKPLKTLEGHSNVL 374
Query: 96 CVAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKA 155
V++ PDG + + DG + ++D+ + + + +++
Sbjct: 375 SVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSR-------------------- 414
Query: 156 VSTVCYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFIN 207
V+++ +S DG + + I ++ + + F+ +D
Sbjct: 415 VTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDGKVLASKSSDLSV 466
>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat.
Length = 39
Score = 46.6 bits (111), Expect = 3e-07
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWN 77
L GH GPV+ + FSP + S S D TV++W+
Sbjct: 6 TLKGHTGPVTSVAFSP--DGNLLASGSDDGTVRVWD 39
>gnl|CDD|197651 smart00320, WD40, WD40 repeats. Note that these repeats are
permuted with respect to the structural repeats
(blades) of the beta propeller domain.
Length = 40
Score = 45.8 bits (109), Expect = 7e-07
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWN 77
L GH GPV+ + FSP + S S D T+KLW+
Sbjct: 7 TLKGHTGPVTSVAFSP--DGKYLASGSDDGTIKLWD 40
Score = 27.7 bits (62), Expect = 1.8
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 154 KAVSTVCYSADGSCILAAGQSKYICIYS 181
V++V +S DG + + I ++
Sbjct: 13 GPVTSVAFSPDGKYLASGSDDGTIKLWD 40
>gnl|CDD|204007 pfam08625, Utp13, Utp13 specific WD40 associated domain. Utp13 is
a component of the five protein Pwp2 complex that forms
part of a stable particle subunit independent of the U3
small nucleolar ribonucleoprotein that is essential for
the initial assembly steps of the 90S pre-ribosome. Pwp2
is capable of interacting directly with the 35 S
pre-rRNA 5' end.
Length = 138
Score = 45.6 bits (109), Expect = 8e-06
Identities = 24/101 (23%), Positives = 53/101 (52%), Gaps = 14/101 (13%)
Query: 297 QSVKEALADKDYAKALMMSLKLNEQGLIIHVLENIRTRDIAL-------TVRSLAEIYLE 349
Q + L + DY++AL+++L L+ +++VL+++ + ++ T+ L + LE
Sbjct: 2 QELSNLLREGDYSEALLLALTLDHPHRLLNVLKSVIEDEDSIGSDELEETIGRLRKDQLE 61
Query: 350 KLLKFIAAMLEVSKHIEFYVSWVSQILM--VLKSPSQTTLV 388
+LLKFI ++ V+Q+++ +L+S L+
Sbjct: 62 RLLKFIRDWNTNART-----CHVAQLVLSVILRSFPPEELL 97
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 37.5 bits (87), Expect = 0.012
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 617 IDYILNQTGHNSLITLGHSLGTTNVLIAGSLRPEYQTKVRLNVLWAQSAFLGNLVTRDML 676
++ +L+ G + + +GHS+G L + P+ + L + L R L
Sbjct: 32 LEALLDALGLDKVNLVGHSMGGLIALAYAAKYPDRVKALVLVGTVHPAGLSSPLTPRGNL 91
Query: 677 EGL 679
GL
Sbjct: 92 LGL 94
Score = 37.1 bits (86), Expect = 0.016
Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 20/112 (17%)
Query: 535 IDYILNQTGHNSLITLGHSLGTTNVLIAGSLRPEYQTKV----------RLNVLWAQSAF 584
++ +L+ G + + +GHS+G L + P+ + + L +
Sbjct: 32 LEALLDALGLDKVNLVGHSMGGLIALAYAAKYPDRVKALVLVGTVHPAGLSSPLTPRGNL 91
Query: 585 LGNLV------TKDMLEGLYGIYALNIFQVGLYDTTATIDYILNQTGHNSLI 630
LG L+ D +E L G +G + L Q +SLI
Sbjct: 92 LGLLLDNFFNRLYDSVEALLGRAIKQFQALGRPFVSD----FLKQFELSSLI 139
>gnl|CDD|215470 PLN02872, PLN02872, triacylglycerol lipase.
Length = 395
Score = 34.8 bits (80), Expect = 0.15
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 426 GYDIWLWNARGNVYSREHVNLTSEQNKFYRFS 457
G+D+W+ N RG +S HV L+ + +F+ +S
Sbjct: 107 GFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWS 138
>gnl|CDD|113997 pfam05246, DUF735, Protein of unknown function (DUF735). This
family consists of several uncharacterized Borrelia
burgdorferi (Lyme disease spirochete) proteins of
unknown function.
Length = 211
Score = 34.2 bits (78), Expect = 0.16
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 307 DYAKALMMSLK-LNEQGLIIHVLENIRTRDIALTVRSLAEIY------LEKLLKFIAAML 359
DYAKA++ LK L E + I+V+ENI+++ IA+ + + + L+ + I A++
Sbjct: 21 DYAKAILNELKELLENFISINVIENIKSKYIAILILQIFNAFHAKKELLKNITNNIDAII 80
Query: 360 EVSKHI 365
KHI
Sbjct: 81 FAIKHI 86
>gnl|CDD|163696 cd08065, MPN_eIF3h, Mpr1p, Pad1p N-terminal (MPN) domains without
catalytic isopeptidase activity, found in eIF2h.
Eukaryotic translation initiation factor 3 (eIF3)
subunit h (eIF3h; eIF3 subunit 3; eIF3S3; eIF3-gamma;
eIF3-p40) is an evolutionarily non-conserved subunit of
the functional core that comprises eIF3a, eIF3b, eIF3c,
eIF3e, eIF3f, and eIF3h, and contains the MPN domain.
However, it lacks the canonical JAMM motif, and
therefore does not show catalytic isopeptidase
activity.Together with eIF3e and eIF3f, eIF3h stabilizes
the eIF3 complex. Results suggest that eIF3h regulates
cell growth and viability, and that over-expression of
the gene may provide growth advantage to prostate,
breast, and liver cancer cells. For example, EIF3h gene
amplification is common in late-stage prostate cancer
suggesting that it may be functionally involved in the
progression of the disease. It has been shown that
coamplification of MYC, a well characterized oncogene
involved in cell growth, differentiation, and apoptosis,
and EIF3h in patients with non-small cell lung cancer
(NSCLC) improves survival if treated with the Epidermal
Growth Factor Receptor Tyrosine Kinase Inhibitor
(EGFR-TKI), Gefitinib. Plant eIF3h is implicated in
translation of specific mRNAs.
Length = 266
Score = 31.1 bits (71), Expect = 1.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 657 LNVLWAQSAFLGNLVTRDMLEGLYGIYAEYQTISGYFI 694
+V W QS +LG+ TRD++E Y YQ +
Sbjct: 80 NHVGWYQSTYLGSFFTRDLIETQY----NYQEAIEESV 113
Score = 30.3 bits (69), Expect = 3.4
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 575 LNVLWAQSAFLGNLVTKDMLEGLYGIYALNI--FQVGLYDTTAT 616
+V W QS +LG+ T+D++E Y Y I V +YD + T
Sbjct: 80 NHVGWYQSTYLGSFFTRDLIETQY-NYQEAIEESVVLVYDPSKT 122
>gnl|CDD|185120 PRK15198, PRK15198, outer membrane usher protein FimD; Provisional.
Length = 860
Score = 31.4 bits (71), Expect = 2.2
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 543 GHNSLITLGHSLGTTNVLI----AGSLRPEYQTKVR 574
GH IT LG TNVLI AG +R E QT V+
Sbjct: 681 GHEDGITFSQPLGDTNVLIKAPGAGGVRIENQTGVK 716
Score = 31.4 bits (71), Expect = 2.2
Identities = 18/36 (50%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 625 GHNSLITLGHSLGTTNVLI----AGSLRPEYQTKVR 656
GH IT LG TNVLI AG +R E QT V+
Sbjct: 681 GHEDGITFSQPLGDTNVLIKAPGAGGVRIENQTGVK 716
>gnl|CDD|111194 pfam02273, Acyl_transf_2, Acyl transferase. This bacterial family
of Acyl transferases (or myristoyl-acp-specific
thioesterases) catalyze the first step in the
bioluminescent fatty acid reductase system.
Length = 294
Score = 31.0 bits (70), Expect = 2.2
Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 17/124 (13%)
Query: 567 PEYQTKVRLNVLWAQSAFLGNLVTKDMLEGLYGIYALNIFQVGLYDT-------TATIDY 619
P+ R N + S F + D GL + N F V YD+ + ID
Sbjct: 22 PKENVPKRNNTIVIASGFARRM---DHFAGLAEYLSTNGFHVIRYDSLHHVGLSSGEIDE 78
Query: 620 ILNQTGHNSLITLGHSLGTTNV----LIAGSL--RPEYQTKVRLNVLWAQSAFLGNLVTR 673
G NSL+T+ L T + LIA SL R Y+ +N+ + +A +G + R
Sbjct: 79 FTMSVGKNSLLTVIDWLKTRGINNIGLIASSLSARIAYEVISEINLSFLITA-VGVVNLR 137
Query: 674 DMLE 677
D LE
Sbjct: 138 DTLE 141
>gnl|CDD|235037 PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 435
Score = 30.9 bits (71), Expect = 2.4
Identities = 10/40 (25%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 308 YAKALMMSLKLNEQG-LIIHVLENIRTRD-IALTVRSLAE 345
+ K+L++ L +G V+E + +R +T+R L
Sbjct: 168 FVKSLLLLAPLFAEGDTETTVIEPLPSRPHTEITLRMLRA 207
>gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a
structurally conserved phosphate binding motif and in
general share an eight beta/alpha closed barrel
structure. Specific for this family is the conserved
phosphate binding site at the edges of strands 7 and 8.
The phosphate comes either from the substrate, as in the
case of inosine monophosphate dehydrogenase (IMPDH), or
from ribulose-5-phosphate 3-epimerase (RPE) or from
cofactors, like FMN.
Length = 200
Score = 29.1 bits (65), Expect = 7.0
Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 5/92 (5%)
Query: 266 WVAATTEGVHIYSLDSGYVFDPFLLDIS-ITPQSVKEALADKDYAKALM----MSLKLNE 320
A ++ L +++ T + LA D A A+ +
Sbjct: 26 ADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGA 85
Query: 321 QGLIIHVLENIRTRDIALTVRSLAEIYLEKLL 352
G+ IH R+ +R L E + +
Sbjct: 86 DGVEIHGAVGYLAREDLELIRELREAVPDVKV 117
>gnl|CDD|129176 TIGR00066, g_glut_trans, gamma-glutamyltranspeptidase. Also called
gamma-glutamyltranspeptidase (ggt). Some members of this
family have antibiotic synthesis or resistance
activities. In the case of a cephalosporin acylase from
Pseudomonas sp., the enzyme was shown to retain some
gamma-glutamyltranspeptidase activity. Other, more
distantly related proteins have ggt-related activities
and score below the trusted cutoff [Biosynthesis of
cofactors, prosthetic groups, and carriers, Glutathione
and analogs].
Length = 516
Score = 29.4 bits (66), Expect = 7.1
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 277 YSLDSGYVFDPFLLDISITPQSVKEALADKDYAKALMMSLKLNEQG 322
Y+ S Y+ DP +D+ + E L DK YAK L S+K+N+
Sbjct: 287 YADRSRYLGDPEFVDVPL------EELLDKRYAKELAQSIKINKVD 326
>gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis
methyltransferases. This model represents a family of
methyltransferases involved in the biosynthesis of
menaquinone and ubiqinone. Some members such as the UbiE
enzyme from E. coli are believed to act in both
pathways, while others may act in only the menaquinone
pathway. These methyltransferases are members of the
UbiE/CoQ family of methyltransferases (pfam01209) which
also contains ubiquinone methyltransferases and other
methyltransferases. Members of this clade include a wide
distribution of bacteria and eukaryotes, but no archaea.
An outgroup for this clade is provided by the
phosphatidylethanolamine methyltransferase (EC 2.1.1.17)
from Rhodobacter sphaeroides. Note that a number of
non-orthologous genes which are members of pfam03737
have been erroneously annotated as MenG
methyltransferases [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 223
Score = 28.8 bits (65), Expect = 7.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 244 AARVLKPEVRVFCVKFSPTGQAWVAA 269
RVLKP R+ ++FS A +
Sbjct: 129 MYRVLKPGGRLVILEFSKPANALLKK 154
>gnl|CDD|223206 COG0128, AroA, 5-enolpyruvylshikimate-3-phosphate synthase [Amino
acid transport and metabolism].
Length = 428
Score = 29.1 bits (66), Expect = 7.9
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 308 YAKALMMSLKLNEQGLIIHVLENIR---TRDIALTV 340
+L++ L +G I V + D L +
Sbjct: 171 QVSSLLLLAPLLAEGTTIIVGGVLESKPYIDHTLDM 206
>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional.
Length = 793
Score = 29.3 bits (65), Expect = 9.4
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 45 GHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWN 77
GH VS + F + S+ +VS+S D T+KLW+
Sbjct: 659 GHSKTVSYVRF---VDSSTLVSSSTDNTLKLWD 688
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.384
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,837,755
Number of extensions: 3405664
Number of successful extensions: 2876
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2839
Number of HSP's successfully gapped: 36
Length of query: 703
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 599
Effective length of database: 6,324,786
Effective search space: 3788546814
Effective search space used: 3788546814
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)