RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy7108
(703 letters)
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 68.6 bits (166), Expect = 5e-13
Identities = 21/142 (14%), Positives = 45/142 (31%), Gaps = 24/142 (16%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDA--LCVAY 99
+GHE ++ I F P + + S D T +L++ V++
Sbjct: 221 TFTGHESDINAICFFP--NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSF 278
Query: 100 KPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTV 159
G ++ D ++D A + G + + VS +
Sbjct: 279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--------------------RVSCL 318
Query: 160 CYSADGSCILAAGQSKYICIYS 181
+ DG + ++ I++
Sbjct: 319 GVTDDGMAVATGSWDSFLKIWN 340
Score = 49.7 bits (117), Expect = 7e-07
Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 18/129 (13%)
Query: 64 MVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESA 123
VS + D + KLW+ E + SD + + P+G + D +FD+ +
Sbjct: 199 FVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRA- 257
Query: 124 AQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSR 183
D +L+T +++V +S G +LA ++ +
Sbjct: 258 -----------------DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300
Query: 184 EGILLKKFT 192
+
Sbjct: 301 KADRAGVLA 309
Score = 44.7 bits (104), Expect = 2e-05
Identities = 41/267 (15%), Positives = 80/267 (29%), Gaps = 40/267 (14%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKP 101
L GH + + + S +VSAS D + +W++ T+ H S + AY P
Sbjct: 50 TLRGHLAKIYAMHWGT--DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAP 107
Query: 102 DGTEIVVATLDGQLIMFDVESAAQVGSVEARRD-------------------------LD 136
G + LD ++++++ V
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCA 167
Query: 137 SGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSREGILLKKFTITQN 196
++T T + V ++ + D ++ ++ REG+ + FT
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT---- 223
Query: 197 KSLDGINDFINRRKMTEFGNVSLIETRETHEGGNVVLKLPGVKKGDMAARVLKPEVRVFC 256
G IN GN + L + M +
Sbjct: 224 ----GHESDINAICFFPNGNAFAT----GSDDATCRLFDLRADQELMTYSHDNIICGITS 275
Query: 257 VKFSPTGQAWVAATTEG-VHIYSLDSG 282
V FS +G+ +A + +++
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKA 302
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 60.9 bits (146), Expect = 1e-10
Identities = 42/273 (15%), Positives = 93/273 (34%), Gaps = 37/273 (13%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDAL------ 95
LSGH PV+ + F P + MVSAS D T+K+W+ ET T++ +D++
Sbjct: 12 ALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWD-YETGDFERTLKGHTDSVQDISFD 68
Query: 96 -------------CVAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDS----G 138
+ + T+ G S G D
Sbjct: 69 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128
Query: 139 RLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKS 198
+ T + + + V V + DG+ I + + + ++ + +++
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL--REHRH 186
Query: 199 LDGINDFINRRKMTEFGNVSLIETRETHEGGNVV--------LKLPGVKKGDMAARVLKP 250
+ + + + ET+++ + G + +K+ V G ++
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246
Query: 251 EVRVFCVKFSPTGQAWVAATTEG-VHIYSLDSG 282
+ V V F G+ ++ + + ++ +
Sbjct: 247 DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 279
Score = 60.5 bits (145), Expect = 2e-10
Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDA-LCVAYK 100
L GH+ V + F ++S + DKT+++W+ + +T+ + +
Sbjct: 242 TLVGHDNWVRGVLFHS--GGKFILSCADDKTLRVWD-YKNKRCMKTLNAHEHFVTSLDFH 298
Query: 101 PDGTEIVVATLDGQLIMFD 119
+V ++D + +++
Sbjct: 299 KTAPYVVTGSVDQTVKVWE 317
Score = 50.9 bits (120), Expect = 2e-07
Identities = 17/159 (10%), Positives = 45/159 (28%), Gaps = 20/159 (12%)
Query: 22 VLKLPGVKKGDMAARVLKPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVET 81
+L + S ++S S DKT+K+W+
Sbjct: 178 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 237
Query: 82 DTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLD 141
+ + V + G I+ D L ++D ++ + ++ A
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH------- 290
Query: 142 TDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIY 180
V+++ + ++ + + ++
Sbjct: 291 -------------FVTSLDFHKTAPYVVTGSVDQTVKVW 316
Score = 48.2 bits (113), Expect = 2e-06
Identities = 36/215 (16%), Positives = 69/215 (32%), Gaps = 15/215 (6%)
Query: 64 MVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESA 123
+VSAS DKT+K+W V DGT I + D + ++ V +
Sbjct: 116 IVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 175
Query: 124 AQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSR 183
+ R + + +A T G +L+ + K I ++
Sbjct: 176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 235
Query: 184 EGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSLIETRETHEGGNVVLKLPGVKKGDM 243
G+ L +L G ++++ G L + + ++ K
Sbjct: 236 TGMCL--------MTLVGHDNWVRGVLFHSGGKFILS----CADDKTL--RVWDYKNKRC 281
Query: 244 AARVLKPEVRVFCVKFSPTGQAWVAATTEG-VHIY 277
+ E V + F T V + + V ++
Sbjct: 282 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 60.6 bits (145), Expect = 2e-10
Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLL---SDALCV 97
++ + +S I+ P S + ++ SWD ++ ++ + +Q L LC
Sbjct: 5 QIEQAPKDYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 98 AYKPDGTEIVV 108
+ + +
Sbjct: 63 NFIDNTDLQIY 73
Score = 39.4 bits (90), Expect = 0.001
Identities = 8/97 (8%), Positives = 28/97 (28%), Gaps = 21/97 (21%)
Query: 86 ETIQLL---SDAL-CVAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLD 141
+ +Q+ D + + P + +++ + DG L ++ + A+ +
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH---- 57
Query: 142 TDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYIC 178
+ + + + G +
Sbjct: 58 -------------PLLCCNFIDNTDLQIYVGTVQGEI 81
Score = 36.0 bits (81), Expect = 0.012
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 46 HEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHET 87
S ++ + S + A+ D T K A++ +
Sbjct: 291 KFNEDSVVKIAC--SDNILCLATSDDTFKTNAAIDQTIELNA 330
Score = 30.2 bits (66), Expect = 0.81
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 250 PEVRVFCVKFSPTGQAWVAATTEG-VHIYSLDSG 282
P+ + +K P+ + + +G + +Y D
Sbjct: 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQ 43
Score = 29.4 bits (64), Expect = 1.5
Identities = 11/122 (9%), Positives = 30/122 (24%), Gaps = 26/122 (21%)
Query: 60 SSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFD 119
++S + DT + + P + A DG + ++
Sbjct: 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVN-----SIEFSPRHKFLYTAGSDGIISCWN 279
Query: 120 VESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICI 179
+++ ++ + K S V + + + A
Sbjct: 280 LQTRKKIKNFA---------------------KFNEDSVVKIACSDNILCLATSDDTFKT 318
Query: 180 YS 181
+
Sbjct: 319 NA 320
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 57.9 bits (138), Expect = 2e-09
Identities = 24/158 (15%), Positives = 53/158 (33%), Gaps = 28/158 (17%)
Query: 39 KPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDA---- 94
+ E +GH+ V + F+ +VS S D++VKLWN + + ++ S
Sbjct: 246 ENESGTGHKDSVYSVVFTR--DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVT 303
Query: 95 --------LCVAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVT 146
L VA + I+ + D ++ +D +S + ++ + V
Sbjct: 304 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG---------HRNSVI 354
Query: 147 REQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSRE 184
+ + + I+ ++
Sbjct: 355 S-----VAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387
Score = 40.2 bits (92), Expect = 7e-04
Identities = 20/115 (17%), Positives = 42/115 (36%), Gaps = 7/115 (6%)
Query: 70 DKTVKLWNAVETD----TQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESAAQ 125
+ L+N H+++ S CV + DG + + ++ V +
Sbjct: 37 NDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSL 95
Query: 126 VGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIY 180
V + D + + +L T + +VC+S DG + + + I I+
Sbjct: 96 VARLS--DDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIW 148
Score = 38.2 bits (87), Expect = 0.003
Identities = 41/286 (14%), Positives = 89/286 (31%), Gaps = 53/286 (18%)
Query: 45 GHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDA---------- 94
H V C++FS ++ +KT +++ V + + S A
Sbjct: 60 DHTSVVCCVKFSN---DGEYLATGCNKTTQVYR-VSDGSLVARLSDDSAANKDPENLNTS 115
Query: 95 ---------LCVAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRD----------- 134
V + PDG + D + ++D+E+ V ++
Sbjct: 116 SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG 175
Query: 135 -----------LDSGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSR 183
+ L T + S++ + DG I A + + ++ S
Sbjct: 176 DKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSE 235
Query: 184 EGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSLIETRETH------EGGNVVLKLPG 237
G L+++ ++N+S G D + T G + + + + N
Sbjct: 236 TGFLVERLD-SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKT 294
Query: 238 VKKGDMAARVLKPEVRVFCVKFSPTGQAWVAATTEG-VHIYSLDSG 282
G + + V V + + ++ + + V + SG
Sbjct: 295 PNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG 340
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 56.7 bits (135), Expect = 3e-09
Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 3/75 (4%)
Query: 46 HEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTE 105
HE V ++F+ VS D + W + S L D
Sbjct: 264 HESCVLSLKFAY--CGKWFVSTGKDNLLNAWR-TPYGASIFQSKESSSVLSCDISVDDKY 320
Query: 106 IVVATLDGQLIMFDV 120
IV + D + +++V
Sbjct: 321 IVTGSGDKKATVYEV 335
Score = 48.3 bits (113), Expect = 2e-06
Identities = 15/79 (18%), Positives = 23/79 (29%), Gaps = 8/79 (10%)
Query: 45 GHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDA-----LCVAY 99
H V + S T V VK+W+ + QL
Sbjct: 49 NHGEVVCAVTISN---PTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKL 105
Query: 100 KPDGTEIVVATLDGQLIMF 118
PDG ++V L ++
Sbjct: 106 LPDGCTLIVGGEASTLSIW 124
Score = 44.0 bits (102), Expect = 4e-05
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 39 KPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWN 77
S V + S +V+ S DK ++
Sbjct: 298 ASIFQSKESSSVLSCDISV--DDKYIVTGSGDKKATVYE 334
Score = 40.6 bits (93), Expect = 5e-04
Identities = 15/137 (10%), Positives = 34/137 (24%), Gaps = 24/137 (17%)
Query: 45 GHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGT 104
+ + + P ++ + + V +++ S L + + G
Sbjct: 222 DFTSQIFSLGYCPT---GEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGK 278
Query: 105 EIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYSAD 164
V D L + A + + +V + S D
Sbjct: 279 WFVSTGKDNLLNAWRTPYGASIFQSKES---------------------SSVLSCDISVD 317
Query: 165 GSCILAAGQSKYICIYS 181
I+ K +Y
Sbjct: 318 DKYIVTGSGDKKATVYE 334
Score = 29.4 bits (64), Expect = 1.4
Identities = 9/59 (15%), Positives = 15/59 (25%)
Query: 232 VLKLPGVKKGDMAARVLKPEVRVFCVKFSPTGQAWVAATTEGVHIYSLDSGYVFDPFLL 290
L PG+ + L V V S + V ++ + P
Sbjct: 32 ALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQ 90
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 55.4 bits (131), Expect = 7e-09
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 11/63 (17%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKP 101
+SGH ++ + +P+ +S S+D + W++ H + + +
Sbjct: 8 TISGHNKGITALTVNPL------ISGSYDGRIMEWSSSSMHQDHS-----NLIVSLDNSK 56
Query: 102 DGT 104
Sbjct: 57 AQE 59
Score = 48.0 bits (112), Expect = 2e-06
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAV 79
+ L+ H+ V+ + + + +VS+ D +K WN V
Sbjct: 252 KALNAHKDGVNNLLWET---PSTLVSSGADACIKRWNVV 287
Score = 43.4 bits (100), Expect = 5e-05
Identities = 7/71 (9%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 51 SCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDA-LCVAYKPDGTEIVVA 109
+ + + S D + +++ + + D + ++ T +V +
Sbjct: 217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSS 275
Query: 110 TLDGQLIMFDV 120
D + ++V
Sbjct: 276 GADACIKRWNV 286
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1
{Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 54.2 bits (128), Expect = 2e-08
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQ 89
+V GH ++ + S + SA + + W+ + T +
Sbjct: 6 QVRYGHNKAITALSSSA--DGKTLFSADAEGHINSWD-ISTGISNRVFP 51
Score = 41.5 bits (95), Expect = 2e-04
Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 64 MVSASWDKTVKLWNAVETDTQHETIQLLS---DALCVAYKPDGTEIVVATLDGQLIMFDV 120
+ + S D +V +WN + + H I + ++ + T IV A D + ++V
Sbjct: 239 LATGSLDNSVIVWN-MNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
Score = 38.8 bits (88), Expect = 0.002
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 44 SGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWN 77
+ V+ + + T +VSA D +K WN
Sbjct: 266 AHAMSSVNSVIWLN---ETTIVSAGQDSNIKFWN 296
Score = 35.3 bits (79), Expect = 0.022
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 154 KAVSTVCYSADGSCILAAGQSKYICIYSSREGILLKKFT 192
KA++ + SADG + +A +I + GI + F
Sbjct: 13 KAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP 51
Score = 32.6 bits (72), Expect = 0.15
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 95 LCVAYKPDGTEIVVATLDGQLIMFDVESAAQV 126
++ DG + A +G + +D+ +
Sbjct: 16 TALSSSADGKTLFSADAEGHINSWDISTGISN 47
Score = 28.4 bits (61), Expect = 3.2
Identities = 6/30 (20%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 254 VFCVKFSPTGQAWVAATTEG-VHIYSLDSG 282
+ + S G+ +A EG ++ + + +G
Sbjct: 15 ITALSSSADGKTLFSADAEGHINSWDISTG 44
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 53.7 bits (127), Expect = 4e-08
Identities = 11/94 (11%), Positives = 28/94 (29%), Gaps = 17/94 (18%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDAL------ 95
H+ + + + VS S D +K+W+ D ++ + S +
Sbjct: 9 AGKAHDADIFSVSACN----SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64
Query: 96 -------CVAYKPDGTEIVVATLDGQLIMFDVES 122
+ + + G L+ + +
Sbjct: 65 HVDVLQAIERDAFELCLVATTSFSGDLLFYRITR 98
Score = 43.7 bits (101), Expect = 5e-05
Identities = 34/290 (11%), Positives = 80/290 (27%), Gaps = 34/290 (11%)
Query: 23 LKLPGVKKGDMAARVLKPEVLSGHEGPVSCIEFSPVLSSTG-----MVSASWDKTVKLWN 77
LK+ K D K H+ + ++ + + + S+ + +
Sbjct: 36 LKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYR 95
Query: 78 AVETDTQHETIQLLSDALCVAYKPDG---------------TEIVVATLDGQLIMFDVES 122
D + I D L K +V + G ++
Sbjct: 96 ITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155
Query: 123 AAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSK---YICI 179
A + S L+ ++ ++V S G ++A G + I
Sbjct: 156 FADESNSLTLN--WSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISE 211
Query: 180 YSSREGILLKKFTITQNKSLDGINDFINRRKMTEF------GNVSLIETRETHEGGNVVL 233
S+ + + + + + I + + + I ET G +
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271
Query: 234 KLPGVKKGDMAARVLKPEVRVFCVKFSPTGQAWVAATTEG-VHIYSLDSG 282
+ V + F+ +G+ +A +G + + + +
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 52.2 bits (123), Expect = 9e-08
Identities = 12/99 (12%), Positives = 28/99 (28%), Gaps = 10/99 (10%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKP 101
L S + A + ++ + ++ ++ +
Sbjct: 271 PLESSILIYSVPVHGEFAAY--YQGAPEKGVLLKYDV----KTRKVTEVKNNLTDLRLSA 324
Query: 102 DGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRL 140
D ++V DG++ F +E E + D L
Sbjct: 325 DRKTVMVRKDDGKIYTFPLEK----PEDERTVETDKRPL 359
Score = 35.6 bits (80), Expect = 0.019
Identities = 15/154 (9%), Positives = 41/154 (26%), Gaps = 32/154 (20%)
Query: 64 MVSASWDKTVKLWNAVETD------TQHETIQLLSDA-LCVAYKPDGTEIV--------- 107
+ S+ + V + ++ I L+ + P
Sbjct: 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDM 252
Query: 108 ----------------VATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSL 151
+ L+ ++++ V + + L D+ TR+ +
Sbjct: 253 YKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE 312
Query: 152 KAKAVSTVCYSADGSCILAAGQSKYICIYSSREG 185
++ + SAD ++ I + +
Sbjct: 313 VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 346
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 51.0 bits (120), Expect = 2e-07
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 44 SGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQL---LSDALCVAYK 100
S P+SC ++ T + + V ++ + + +L V +
Sbjct: 4 SFLVEPISCHAWNK--DRTQIAICPNNHEVHIYE-KSGNKWVQVHELKEHNGQVTGVDWA 60
Query: 101 PDGTEIVVATLDGQLIMFD 119
PD IV D ++
Sbjct: 61 PDSNRIVTCGTDRNAYVWT 79
Score = 44.8 bits (104), Expect = 2e-05
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWN 77
L H G V+ ++++P S +V+ D+ +W
Sbjct: 46 ELKEHNGQVTGVDWAP--DSNRIVTCGTDRNAYVWT 79
Score = 43.7 bits (101), Expect = 6e-05
Identities = 11/86 (12%), Positives = 30/86 (34%), Gaps = 18/86 (20%)
Query: 96 CVAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKA 155
C A+ D T+I + + ++ +++ +L
Sbjct: 12 CHAWNKDRTQIAICPNNHEVHIYEKSG----NKWVQVHELKEHN--------------GQ 53
Query: 156 VSTVCYSADGSCILAAGQSKYICIYS 181
V+ V ++ D + I+ G + +++
Sbjct: 54 VTGVDWAPDSNRIVTCGTDRNAYVWT 79
Score = 42.9 bits (99), Expect = 9e-05
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 42 VLSGHEGPVSCIEFSPVLSS--TGMVSASWDKTVKLWNAVETDTQHETIQLL 91
+ S H+ VS I + + + D + +W+ + ++ L
Sbjct: 320 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV---RSLESALKDL 368
Score = 33.3 bits (74), Expect = 0.089
Identities = 6/49 (12%), Positives = 18/49 (36%)
Query: 150 SLKAKAVSTVCYSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKS 198
S + +S ++ D + I + + IY ++ + ++
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG 52
Score = 33.3 bits (74), Expect = 0.097
Identities = 35/160 (21%), Positives = 53/160 (33%), Gaps = 6/160 (3%)
Query: 43 LSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPD 102
S G V + FS S + S D TV L +A + L V + +
Sbjct: 197 SSSSCGWVHGVCFSANGSR--VAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITE 254
Query: 103 GTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYS 162
+ +V A D ++F +SAA S R D+ L RE+ ++ S
Sbjct: 255 SS-LVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGS 313
Query: 163 ADGSCILAAGQSKYI-CIYSSREGILLKKFTITQNKSLDG 201
A L + + I G T +DG
Sbjct: 314 AAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCT--TGMDG 351
Score = 27.9 bits (60), Expect = 4.1
Identities = 5/30 (16%), Positives = 8/30 (26%), Gaps = 1/30 (3%)
Query: 254 VFCVKFSPTGQAWVAATTEG-VHIYSLDSG 282
+ C ++ VHIY
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGN 39
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 50.2 bits (118), Expect = 4e-07
Identities = 17/130 (13%), Positives = 42/130 (32%), Gaps = 5/130 (3%)
Query: 19 GNVVLKLPGVKKGDMAARVLKPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNA 78
+ G+ D+ + + + +P + ++ ++
Sbjct: 212 ADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNP----AKTRAFGAYNVLESFD- 266
Query: 79 VETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSG 138
+E + + + L V DG+ + + G L +D E+ + G V+ +
Sbjct: 267 LEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMS 326
Query: 139 RLDTDLVTRE 148
L TR+
Sbjct: 327 LASVRLFTRD 336
Score = 40.2 bits (92), Expect = 6e-04
Identities = 7/86 (8%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 64 MVSASWDKTVKLWNAVETDTQHETIQLLSD---ALCVAYKPDGTEIVVA-TLDGQLIMFD 119
+++ + + + + E + I + + P G L+ D
Sbjct: 4 ILAPARPDKLVVID-TEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62
Query: 120 VESAAQVGSVEARRDLDSGRLDTDLV 145
+ + +G ++ + +
Sbjct: 63 LVTGETLGRIDLSTPEERVKSLFGAA 88
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 47.6 bits (111), Expect = 2e-06
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 64 MVSASWDKTVKLWNAVETDTQHETIQLLSDAL--CVAYKPDGTEIVVATLDGQLIMFDVE 121
+ SAS DKT+K+WN V T +TI + + + +V + +G + + E
Sbjct: 253 IASASADKTIKIWN-VATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
Score = 40.3 bits (92), Expect = 5e-04
Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWN 77
+ + H + + SP S S V++W+
Sbjct: 53 IYTEHSHQTTVAKTSP--SGYYCASGDVHGNVRIWD 86
Score = 37.6 bits (85), Expect = 0.004
Identities = 11/80 (13%), Positives = 23/80 (28%), Gaps = 5/80 (6%)
Query: 40 PEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDA-LCVA 98
P + G + +P + + + +V V + T E S
Sbjct: 10 PSLPRTARGTAVVLGNTP--AGDKIQYCN-GTSVYTVP-VGSLTDTEIYTEHSHQTTVAK 65
Query: 99 YKPDGTEIVVATLDGQLIMF 118
P G + G + ++
Sbjct: 66 TSPSGYYCASGDVHGNVRIW 85
Score = 35.6 bits (80), Expect = 0.016
Identities = 6/46 (13%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 32 DMAARVLKPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWN 77
++A ++ + G + + +VS S + + N
Sbjct: 266 NVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVN 309
Score = 32.6 bits (72), Expect = 0.17
Identities = 11/120 (9%), Positives = 34/120 (28%), Gaps = 19/120 (15%)
Query: 61 STGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDV 120
++ V D + + + + PDGT+I A+ D + +++V
Sbjct: 208 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNV 267
Query: 121 ESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIY 180
+ ++ ++ + +++ + +I
Sbjct: 268 ATLKVEKTIPVGTRIE-------------------DQQLGIIWTKQALVSISANGFINFV 308
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 47.2 bits (110), Expect = 4e-06
Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 42 VLSGHEGPV-SCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDA-LCVAY 99
L GH V +C++F +++ + DK +++++ + + Y
Sbjct: 7 TLRGHMTSVITCLQFEDNY----VITGADDKMIRVYD-SINKKFLLQLSGHDGGVWALKY 61
Query: 100 KPDGT 104
G
Sbjct: 62 AHGGI 66
Score = 38.7 bits (88), Expect = 0.002
Identities = 5/45 (11%), Positives = 13/45 (28%), Gaps = 3/45 (6%)
Query: 32 DMAARVLKPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLW 76
++ + L + + + F T + + D L
Sbjct: 309 NLRSGKLVHANILKDADQIWSVNFKG---KTLVAAVEKDGQSFLE 350
Score = 37.6 bits (85), Expect = 0.005
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 46 HEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDA-LCVAYKPDGT 104
H + F S ++ + + ++N H I +D V +K
Sbjct: 281 HTNLSAITTFYV---SDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTL 337
Query: 105 EIVVATLDGQLIM 117
+ DGQ +
Sbjct: 338 -VAAVEKDGQSFL 349
Score = 27.9 bits (60), Expect = 3.9
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFT 192
C + + ++ K I +Y S L + +
Sbjct: 18 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLS 50
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 47.1 bits (110), Expect = 4e-06
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 7/65 (10%)
Query: 40 PEVLSGHEGPV-SCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDA-LCV 97
P+VL GH+ V +C++F +VS S D T+K+W+ T T+ +
Sbjct: 9 PKVLKGHDDHVITCLQFCGNR----IVSGSDDNTLKVWS-AVTGKCLRTLVGHTGGVWSS 63
Query: 98 AYKPD 102
+ +
Sbjct: 64 QMRDN 68
Score = 42.1 bits (97), Expect = 2e-04
Identities = 25/159 (15%), Positives = 51/159 (32%), Gaps = 35/159 (22%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKP 101
L GH V ++F + +VS S D ++++W+ +L +
Sbjct: 172 TLQGHTNRVYSLQFDGIH----VVSGSLDTSIRVWDV--ETGNCIHTLTGHQSLTSGMEL 225
Query: 102 DGTEIVVATLDGQLIMFDVESAAQVGSVEARR---------------------------- 133
+V D + ++D+++ + +++
Sbjct: 226 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
Query: 134 DLDSGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAG 172
DL +G +LVT E V + S + A G
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTK-LVCAVG 323
Score = 40.2 bits (92), Expect = 6e-04
Identities = 32/226 (14%), Positives = 70/226 (30%), Gaps = 43/226 (19%)
Query: 64 MVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESA 123
+VS ++D VK+W+ H + + DG +V +LD + ++DVE+
Sbjct: 150 VVSGAYDFMVKVWDPETETCLHTLQG--HTNRVYSLQFDGIHVVSGSLDTSIRVWDVETG 207
Query: 124 AQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSR 183
+ +L T + +++ + I+ +
Sbjct: 208 NCI----------------------HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIK 245
Query: 184 EGILLKKFTITQNKSLDGINDFINRRKM---TEFGNVSLIETRETHEGGNVVLKLPGVKK 240
G L+ N+ + ++ G V L + + G + L ++
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKT----GEFIRNLVTLES 301
Query: 241 GDMAARVLKPEVRVFCVKFSPTGQAWVAATTEG-----VHIYSLDS 281
G V + ++ S T + G + + D
Sbjct: 302 GGSGGVV-------WRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340
Score = 37.9 bits (86), Expect = 0.004
Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 11/74 (14%)
Query: 46 HEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDA------LCVAY 99
H+ V+C++F+ ++++S D TVKLW+ ++T + L +
Sbjct: 259 HQSAVTCLQFNKNF----VITSSDDGTVKLWD-LKTGEFIRNLVTLESGGSGGVVWRIRA 313
Query: 100 KPDGTEIVVATLDG 113
V + +G
Sbjct: 314 SNTKLVCAVGSRNG 327
Score = 34.4 bits (77), Expect = 0.038
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 36 RVLKPEVLSGHEGPVSCIEFSP--VLSSTGMVSASWDKTVKLWN 77
R L G G V I S ++ + G + + + + + +
Sbjct: 294 RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
Score = 28.2 bits (61), Expect = 3.8
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFT 192
C G+ I++ + ++S+ G L+
Sbjct: 22 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLV 54
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 46.8 bits (109), Expect = 4e-06
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWN 77
L H G V ++F +VS+S D T+ +W+
Sbjct: 262 TLVEHSGRVFRLQFDE----FQIVSSSHDDTILIWD 293
Score = 41.4 bits (95), Expect = 2e-04
Identities = 24/139 (17%), Positives = 51/139 (36%), Gaps = 19/139 (13%)
Query: 42 VLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKP 101
L+GH+ ++C+++ L +G D T++LW+ + + L +
Sbjct: 173 TLNGHKRGIACLQYRDRLVVSGS----SDNTIRLWDI--ECGACLRVLEGHEELVRCIRF 226
Query: 102 DGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVCY 161
D IV DG++ ++D+ +A + L + + V
Sbjct: 227 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVF-------------RL 273
Query: 162 SADGSCILAAGQSKYICIY 180
D I+++ I I+
Sbjct: 274 QFDEFQIVSSSHDDTILIW 292
Score = 39.8 bits (91), Expect = 7e-04
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 41 EVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQ 89
S V C+++ +VS D T+K+W+ T +
Sbjct: 9 HCRSETSKGVYCLQYD----DQKIVSGLRDNTIKIWD-KNTLECKRILT 52
Score = 29.0 bits (63), Expect = 2.0
Identities = 6/33 (18%), Positives = 11/33 (33%)
Query: 160 CYSADGSCILAAGQSKYICIYSSREGILLKKFT 192
C D I++ + I I+ + T
Sbjct: 20 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILT 52
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 45.9 bits (107), Expect = 1e-05
Identities = 11/103 (10%), Positives = 32/103 (31%), Gaps = 4/103 (3%)
Query: 28 VKKGDMAARVLKPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHET 87
D+ + + SP + ++ ++ +
Sbjct: 232 YLSVDLKTGKTHTQEFADLTELYFTGLRSP---KDPNQIYGVLNRLAKYD-LKQRKLIKA 287
Query: 88 IQLLSDALCVAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVE 130
L CVA+ G ++ + L +F+ ++ +V +++
Sbjct: 288 ANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 330
Score = 38.6 bits (88), Expect = 0.002
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 57 PVLSSTG--MVSASWDKTVKLWNAVETDTQHETIQLLSDA--LCVAYKPDGTEIVVA-TL 111
P L + M+ ++ + + + V +DT +++ + PD V
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVD-VASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNH 60
Query: 112 DGQLIMFDVE 121
G + D++
Sbjct: 61 YGDIYGIDLD 70
Score = 29.3 bits (64), Expect = 1.7
Identities = 10/76 (13%), Positives = 16/76 (21%), Gaps = 19/76 (25%)
Query: 97 VAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAV 156
A K ++V L + DV S +V +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVAS----DTVYKSCVMPDKF---------------GP 42
Query: 157 STVCYSADGSCILAAG 172
T + D
Sbjct: 43 GTAMMAPDNRTAYVLN 58
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 42.6 bits (98), Expect = 9e-05
Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 65 VSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTEIVVA-TLDGQLIMFDVES 122
++ S + + + V ++ TI + S+ + PDGT++ VA + + D +
Sbjct: 6 IANSESDNISVID-VTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTAT 63
Score = 37.9 bits (86), Expect = 0.003
Identities = 14/86 (16%), Positives = 29/86 (33%), Gaps = 1/86 (1%)
Query: 46 HEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYKPDGTE 105
E S I +P + + + T+ I + D +A PDG +
Sbjct: 198 VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKK 257
Query: 106 IVVA-TLDGQLIMFDVESAAQVGSVE 130
+ VA + + + D + ++
Sbjct: 258 VYVALSFCNTVSVIDTATNTITATMA 283
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 42.2 bits (97), Expect = 2e-04
Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 64 MVSASWDKTVKLWNAVETDTQHETIQLLSD-----ALCVAYKPDGTEIVVATLDGQLIMF 118
+ D T+++W+ V T + L + V +G I+ +LDG L +
Sbjct: 266 FATVGADATIRVWD-VTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-IISLSLDGTLNFY 323
Query: 119 DV 120
++
Sbjct: 324 EL 325
Score = 39.1 bits (89), Expect = 0.001
Identities = 11/75 (14%), Positives = 28/75 (37%), Gaps = 11/75 (14%)
Query: 43 LSGHEG-PVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDA------- 94
+GH V+ ++FSP+ S + S V D + ++++ +
Sbjct: 58 FTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVI-VWGWTFDKESNSVEVNVKSEFQVLAG 116
Query: 95 --LCVAYKPDGTEIV 107
+++ +G +
Sbjct: 117 PISDISWDFEGRRLC 131
>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
[TaxId: 9615]}
Length = 377
Score = 40.1 bits (92), Expect = 7e-04
Identities = 24/80 (30%), Positives = 38/80 (47%)
Query: 508 PRSSDTGDIQLKSTRMNELGLYDTTATIDYILNQTGHNSLITLGHSLGTTNVLIAGSLRP 567
++ + +E+ YD ATID+IL +TG + L +GHS GTT IA S P
Sbjct: 108 NLYYSPDSVEFWAFSFDEMAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGFIAFSTNP 167
Query: 568 EYQTKVRLNVLWAQSAFLGN 587
+ +++ A A +
Sbjct: 168 KLAKRIKTFYALAPVATVKY 187
Score = 37.0 bits (84), Expect = 0.006
Identities = 24/69 (34%), Positives = 37/69 (53%)
Query: 601 YALNIFQVGLYDTTATIDYILNQTGHNSLITLGHSLGTTNVLIAGSLRPEYQTKVRLNVL 660
+A + ++ YD ATID+IL +TG + L +GHS GTT IA S P+ +++
Sbjct: 119 WAFSFDEMAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYA 178
Query: 661 WAQSAFLGN 669
A A +
Sbjct: 179 LAPVATVKY 187
Score = 32.0 bits (71), Expect = 0.21
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 425 RGYDIWLWNARGNVYSREHVNLTSEQNKFYRFSCD 459
GYD+WL N+RGN ++R ++ + + +F+ FS D
Sbjct: 90 AGYDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFD 124
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating)
subunit 1 {Thermus thermophilus [TaxId: 274]}
Length = 437
Score = 35.2 bits (80), Expect = 0.024
Identities = 16/79 (20%), Positives = 31/79 (39%)
Query: 268 AATTEGVHIYSLDSGYVFDPFLLDISITPQSVKEALADKDYAKALMMSLKLNEQGLIIHV 327
A E + F+ F L + P++V+ ALA++ + A + + E +
Sbjct: 358 ALLLEVPGVRPFTPKPFFNEFALALPKDPEAVRRALAERGFHGATPVPREYGENLALFAA 417
Query: 328 LENIRTRDIALTVRSLAEI 346
E D+ +L E+
Sbjct: 418 TELHEEEDLLALREALKEV 436
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 34.4 bits (77), Expect = 0.043
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 46 HEGPVSCIEFSPVLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDA-LCVAYKPDG 103
+ I S ++ DKT+ + +A E+ + ++ L + G
Sbjct: 298 MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDA-ESGEELRSVNQLGHGPQVITTADMG 355
Score = 27.1 bits (58), Expect = 8.6
Identities = 16/91 (17%), Positives = 24/91 (26%), Gaps = 17/91 (18%)
Query: 97 VAYKPDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAV 156
A PD + V D A V D ++GR+ + +
Sbjct: 7 EAPAPDARRVYVN---------DPAHFAAVTQQFVI-DGEAGRV-------IGMIDGGFL 49
Query: 157 STVCYSADGSCILAAGQSKYICIYSSREGIL 187
+ DGS I A R +
Sbjct: 50 PNPVVADDGSFIAHASTVFSRIARGERTDYV 80
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli
[TaxId: 562]}
Length = 333
Score = 34.0 bits (76), Expect = 0.055
Identities = 6/63 (9%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Query: 65 VSASWDKTVKLWNAVETDTQHETIQLLS---DALCVAYKPDGTEI-VVATLDGQLIMFDV 120
+++ + + +WN + + Q++ + PD + V + +++ + +
Sbjct: 8 IASPESQQIHVWN-LNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66
Query: 121 ESA 123
Sbjct: 67 APD 69
>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris
[TaxId: 2026]}
Length = 279
Score = 28.5 bits (62), Expect = 2.4
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 264 QAWVAATTEGVHIYSLDSG 282
QAW A G I +D+G
Sbjct: 22 QAWDIAEGSGAKIAIVDTG 40
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 28.5 bits (63), Expect = 2.6
Identities = 14/59 (23%), Positives = 21/59 (35%)
Query: 598 YGIYALNIFQVGLYDTTATIDYILNQTGHNSLITLGHSLGTTNVLIAGSLRPEYQTKVR 656
+ LN QV I + +G+N L L S G + P ++KV
Sbjct: 68 PPPFMLNDTQVNTEYMVNAITALYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVD 126
Score = 28.2 bits (62), Expect = 4.0
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 533 ATIDYILNQTGHNSLITLGHSLGTTNVLIAGSLRPEYQTKVR 574
I + +G+N L L S G + P ++KV
Sbjct: 85 NAITALYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVD 126
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 28.4 bits (62), Expect = 3.2
Identities = 38/283 (13%), Positives = 77/283 (27%), Gaps = 34/283 (12%)
Query: 15 THEGGNVVLKLPGVKKGDMAARVLKPEVLSGHEGPVSCIEFSPVLSSTGMVSASWDKTVK 74
+ + K+ A + ++ S + A W
Sbjct: 79 IGRDARIDMIDLWAKEPTKVAEI---KIGIEARSVESSKFKGYE-DRYTIAGAYWPPQFA 134
Query: 75 LWNAVETDTQHETIQLLSDALCVAYKPDG-TEIVVATLDGQLIMFDVESAAQVGSVEARR 133
+ + + + Y P+ ++A+ + + +V+ +V V +
Sbjct: 135 IMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK- 193
Query: 134 DLDSGRLDTDLVTREQSLKAKAVSTVCYSADGSCILAAGQSKYICIYSSREGILLKKFTI 193
D L + L S+ + AA S + + S++ L +
Sbjct: 194 --DIDNLTVTSIGAAPFLADGGWD----SSHRYFMTAANNSNKVAVIDSKDRRLSALVDV 247
Query: 194 TQNKSLDGINDFINRRKMTEF-------GNVSLIETRE---THEGGNVVLKLPGVKKGDM 243
+ +F++ + + G++SLI T V +L G G
Sbjct: 248 GKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG-- 305
Query: 244 AARVLKPEVRVFCVKFSPTGQAWVAATTEGVHIYSLDSGYVFD 286
+K P TT S VFD
Sbjct: 306 ----------SLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD 338
Score = 28.4 bits (62), Expect = 3.3
Identities = 14/89 (15%), Positives = 32/89 (35%), Gaps = 14/89 (15%)
Query: 40 PEVLSGHEGPVSCIEFSP-----VLSSTGMVSASWDKTVKLWNAVETDTQHETIQLLSDA 94
L G G I+ P + +T A ++V +++ D +++ + + A
Sbjct: 296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWA 355
Query: 95 ---------LCVAYKPDGTEIVVATLDGQ 114
+ Y G E+ + +G+
Sbjct: 356 DLGEGAKRVVQPEYNKRGDEVWFSVWNGK 384
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein,
OASL {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 26.4 bits (58), Expect = 3.4
Identities = 4/31 (12%), Positives = 13/31 (41%)
Query: 102 DGTEIVVATLDGQLIMFDVESAAQVGSVEAR 132
G ++ V DG + + + + ++ +
Sbjct: 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQ 36
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 27.6 bits (60), Expect = 5.1
Identities = 25/249 (10%), Positives = 59/249 (23%), Gaps = 16/249 (6%)
Query: 43 LSGHEGPVSCIEFSPVLS--STGMVSASWDKTVKLWNAVETDTQHETIQLLSDALCVAYK 100
+ + + + G + T V + + + A CV
Sbjct: 64 IVIPAKHAQHVPSPYNTAFSADGKRLYVANITPAASVTVIDAVSKKMLSEIDTAACVLAY 123
Query: 101 PDGTEIVVATLDGQLIMFDVESAAQVGSVEARRDLDSGRLDTDLVTREQSLKAKAVSTVC 160
P G + A + + A + D K + T
Sbjct: 124 PAGDDRFTALCESGKALTVTLDANGKEAKRTMSDAFIDVDKDPAFVNASRYKGDYLFT-- 181
Query: 161 YSADGSCILAAGQSKYICIYSSREGILLKKFTITQNKSLDGINDFINRRKMTEFGNVSLI 220
+ G+ A + + G+ + K + +
Sbjct: 182 -TYGGNVRSADFSGDKPAFGKPWSLLTDA--ERAEGWRPGGMQQTAVQAKQNRYYVLMHK 238
Query: 221 ETRETHE--GGNVVLKLPG---VKKGDMAARVLKPEVRVFCVKFSPTGQ--AWVAATTEG 273
T +H+ G V + A+ + + ++ S + + T
Sbjct: 239 GTDGSHKDPGTQVWVYDLKSKQRVARWDLAQ--QKVEPLVSIQVSEDDKPLFYGLTATSD 296
Query: 274 VHIYSLDSG 282
+ + +G
Sbjct: 297 LVVMDARTG 305
>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}
Length = 285
Score = 27.4 bits (60), Expect = 5.3
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 529 YDTTATIDYILNQTGHNSLITLGHSLGTTNVLIAGSLRPEYQTKV 573
++ I+ +G + +GHS G + ++RP+
Sbjct: 58 EQLLQQVEEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDLIASA 102
Score = 27.4 bits (60), Expect = 5.3
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 611 YDTTATIDYILNQTGHNSLITLGHSLGTTNVLIAGSLRPEYQTKV 655
++ I+ +G + +GHS G + ++RP+
Sbjct: 58 EQLLQQVEEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDLIASA 102
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 25.2 bits (55), Expect = 7.0
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 102 DGTEIVVATLDGQLIMFDVESAAQVGSVEAR 132
+ I+V G+ ++V V ++ +
Sbjct: 2 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQ 32
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 25.2 bits (55), Expect = 7.9
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 105 EIVVATLDGQLIMFDVESAAQVGSVEAR 132
E++V TLD Q F V + V +
Sbjct: 2 EVLVKTLDSQTRTFIVGAQMNVKEFKEH 29
>d1k8kg_ a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC5 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 143
Score = 26.2 bits (58), Expect = 9.3
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 12/82 (14%)
Query: 291 DISITPQSVKEALADKDYAKALMMSL------------KLNEQGLIIHVLENIRTRDIAL 338
V L + AL +L K +++ VL + + DI
Sbjct: 26 QAGPDEGEVDSCLRQGNMTAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEK 85
Query: 339 TVRSLAEIYLEKLLKFIAAMLE 360
V+SL + ++ L+K+I E
Sbjct: 86 AVQSLDKNGVDLLMKYIYKGFE 107
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.384
Gapped
Lambda K H
0.267 0.0373 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,431,350
Number of extensions: 110383
Number of successful extensions: 441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 94
Length of query: 703
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 611
Effective length of database: 1,144,436
Effective search space: 699250396
Effective search space used: 699250396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.3 bits)