Query psy7109
Match_columns 236
No_of_seqs 183 out of 503
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 18:23:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7109.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/7109hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3324|consensus 100.0 3.5E-44 7.7E-49 310.8 8.5 162 16-227 34-202 (206)
2 TIGR00983 3a0801s02tim23 mitoc 100.0 1.9E-43 4.1E-48 295.5 12.0 149 18-217 1-149 (149)
3 PTZ00236 mitochondrial import 99.9 5.9E-27 1.3E-31 199.2 11.3 122 45-219 6-128 (164)
4 TIGR00980 3a0801so1tim17 mitoc 99.9 3E-25 6.6E-30 189.6 11.9 110 56-218 16-125 (170)
5 PF02466 Tim17: Tim17/Tim22/Ti 99.9 2.4E-23 5.1E-28 165.7 12.8 126 49-223 2-127 (128)
6 KOG3225|consensus 99.8 5.1E-21 1.1E-25 162.1 6.1 106 44-149 33-140 (168)
7 KOG1652|consensus 99.8 5.4E-21 1.2E-25 164.4 -0.6 114 54-220 14-127 (183)
8 COG5596 TIM22 Mitochondrial im 99.8 7.6E-21 1.6E-25 164.3 -1.3 128 45-224 63-190 (191)
9 KOG4608|consensus 98.3 9.9E-08 2.2E-12 86.3 0.2 101 49-149 67-178 (270)
10 COG5596 TIM22 Mitochondrial im 94.0 0.0064 1.4E-07 53.6 -2.3 89 56-149 37-126 (191)
11 PF10247 Romo1: Reactive mitoc 93.8 0.068 1.5E-06 40.1 3.2 59 53-115 3-61 (67)
12 KOG4096|consensus 92.3 0.16 3.4E-06 38.9 3.2 66 53-122 7-72 (75)
13 PF12732 YtxH: YtxH-like prote 89.8 0.96 2.1E-05 33.3 5.3 44 61-104 1-44 (74)
14 TIGR00983 3a0801s02tim23 mitoc 88.9 1.1 2.4E-05 38.0 5.7 79 29-110 4-86 (149)
15 KOG1398|consensus 74.4 3.1 6.7E-05 40.9 3.3 45 100-144 297-341 (460)
16 PF02466 Tim17: Tim17/Tim22/Ti 73.9 20 0.00044 28.2 7.4 27 54-80 3-29 (128)
17 COG4980 GvpP Gas vesicle prote 71.5 15 0.00034 30.2 6.3 57 58-118 4-60 (115)
18 PF10785 NADH-u_ox-rdase: NADH 67.7 7.9 0.00017 29.9 3.7 31 200-230 55-85 (86)
19 KOG1398|consensus 52.8 1.2E+02 0.0026 30.3 9.5 139 56-224 34-183 (460)
20 PF01102 Glycophorin_A: Glycop 36.7 34 0.00074 28.3 2.8 28 198-225 67-94 (122)
21 PF13436 Gly-zipper_OmpA: Glyc 32.7 70 0.0015 25.8 4.0 23 200-222 74-96 (118)
22 PF04418 DUF543: Domain of unk 32.6 91 0.002 23.7 4.3 30 45-74 17-46 (75)
23 PF10247 Romo1: Reactive mitoc 31.5 1E+02 0.0022 23.1 4.4 53 50-106 4-56 (67)
24 PF11981 DUF3482: Domain of un 27.8 66 0.0014 30.0 3.4 22 199-220 167-188 (292)
25 PRK10417 nikC nickel transport 27.6 1.2E+02 0.0026 27.3 4.9 44 34-78 44-94 (272)
26 KOG4431|consensus 26.7 1.3E+02 0.0028 24.4 4.4 46 173-223 8-54 (100)
27 TIGR02865 spore_II_E stage II 26.3 1.5E+02 0.0033 31.1 6.0 68 59-218 189-256 (764)
28 PF13436 Gly-zipper_OmpA: Glyc 25.5 1.1E+02 0.0024 24.6 4.0 22 56-77 51-72 (118)
29 PF05818 TraT: Enterobacterial 25.4 90 0.0019 28.3 3.7 15 135-149 89-103 (215)
30 KOG0754|consensus 25.2 37 0.0008 31.9 1.2 37 109-145 179-215 (294)
31 PF13488 Gly-zipper_Omp: Glyci 25.1 1.6E+02 0.0034 20.3 4.1 22 200-221 21-42 (46)
32 PF00153 Mito_carr: Mitochondr 25.0 1.7E+02 0.0037 20.9 4.6 20 130-149 2-21 (95)
33 KOG4505|consensus 24.3 2E+02 0.0044 28.5 6.0 42 100-141 235-276 (467)
34 PRK15082 glutathione ABC trans 24.2 1.3E+02 0.0028 27.6 4.6 44 34-78 77-127 (301)
35 PRK10132 hypothetical protein; 23.6 70 0.0015 25.8 2.4 19 198-216 85-103 (108)
36 PF09955 DUF2189: Predicted in 23.2 3.3E+02 0.0071 22.2 6.3 23 196-218 94-116 (128)
37 PRK10510 putative outer membra 23.1 1.8E+02 0.004 25.7 5.2 20 201-220 61-80 (219)
38 PRK09824 PTS system beta-gluco 23.0 3.7E+02 0.008 27.9 8.0 19 61-79 289-309 (627)
39 PF03484 B5: tRNA synthetase B 22.5 54 0.0012 23.7 1.5 33 160-192 33-66 (70)
40 PLN02975 complex I subunit 22.1 1.2E+02 0.0026 24.3 3.5 30 201-230 57-86 (97)
41 TIGR03789 pdsO proteobacterial 22.1 75 0.0016 29.0 2.6 19 131-149 38-56 (239)
42 KOG4096|consensus 21.2 1.4E+02 0.003 23.0 3.4 52 50-105 8-59 (75)
43 TIGR02790 nickel_nikC nickel A 21.2 2.1E+02 0.0045 25.4 5.2 44 34-78 39-89 (258)
44 TIGR02808 short_TIGR02808 cons 21.0 2.4E+02 0.0051 19.6 4.2 38 187-224 4-41 (42)
45 PF11368 DUF3169: Protein of u 20.8 4.7E+02 0.01 23.2 7.4 19 61-79 15-33 (248)
46 PF04018 DUF368: Domain of unk 20.7 4E+02 0.0086 24.6 7.0 76 110-227 13-109 (257)
No 1
>KOG3324|consensus
Probab=100.00 E-value=3.5e-44 Score=310.82 Aligned_cols=162 Identities=39% Similarity=0.627 Sum_probs=149.1
Q ss_pred cCCCCCCCCC------CCCCCCCCCCccccccch-hhhhhhHHHhhhhhhhHhHhhhHHHHHHHHHhhhhccccCCChhh
Q psy7109 16 QAKSPYLDFD------PAYLPKTSQPEFIFPEGA-SKQRGRFELAFSQIGGSCMLGAAIGGAEGFYKGLRNTTLEGQTGK 88 (236)
Q Consensus 16 ~~~~py~~~d------p~~Lpt~~~PEfIfpEea-~k~Rg~~ee~~~~tG~syl~G~~lGg~~Gl~~G~~~~p~~g~t~K 88 (236)
++++||+++| |.|+-++ |||||||||. .+.|+|+|++|+.||++|+.|+++|+++|++.|+++++ .+.+.|
T Consensus 34 ~~l~P~~~ld~~~n~d~ly~~~~-~pefl~~~eg~~~~rgw~E~l~f~tG~~yl~G~~iGa~~G~~~Glk~~e-~~~~~K 111 (206)
T KOG3324|consen 34 RPLNPYQPLDKPLNVDYLYLLPD-QPEFLFPEEGAIKRRGWFENLTFGTGWAYLTGSAIGAFNGLILGLKNTE-NGASGK 111 (206)
T ss_pred cccCcccccccccccchhhhccC-CccccCchhccccccchhhhhheeccchhccchhhhhHHHHHHhhhcCC-CCCccc
Confidence 5677777665 4554443 9999999665 68889999999999999999999999999999999998 688999
Q ss_pred hHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCCCchhHHHHHHhhhhhhhcccccccccccccccccccCC
Q psy7109 89 LRRTQLLNHIMKHGSATASTLGTIAVMYSSFGVLLQTTRGTDDDFNTLTAATATGMLFRSTGNCLVSSLSSFSLHFCDNK 168 (236)
Q Consensus 89 lRln~iLN~~gkrG~~~GNsfGvigllYSg~ec~ie~~RgK~D~~NSIaAGalTGaLyks~~~~~~~~~~~~~~~~~~~~ 168 (236)
+|+|+|||+++++|+.|||++|++++||+++|++|++.|++||++|+|+||++||+|||++
T Consensus 112 lr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd~lnsv~AGalTGalyrs~------------------- 172 (206)
T KOG3324|consen 112 LRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKDDDLNSVAAGALTGALYRST------------------- 172 (206)
T ss_pred hhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhhccccchhhhhhhhhhhhhhhcC-------------------
Confidence 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCccCCcchhhHHHHHHHHhhhhccCchhhhhhHhHHHHHHHHHHHHhcCCccc
Q psy7109 169 TSAVTVPSIRPLTCSQKLLENIVKERSKRCGLKKCGLGGVVGLGIASLYVLWNKRDSLS 227 (236)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 227 (236)
.|||.+++++++|+++|++|++.+++.+.+
T Consensus 173 -----------------------------~Glr~~av~ga~g~~aa~aw~l~k~~~~~r 202 (206)
T KOG3324|consen 173 -----------------------------RGLRAAAVAGAVGGTAAAAWTLGKRIVKRR 202 (206)
T ss_pred -----------------------------CCchHHHHHHHHHHHHHHHHHHhhhHHhhh
Confidence 899999999999999999999998876654
No 2
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=100.00 E-value=1.9e-43 Score=295.51 Aligned_cols=149 Identities=36% Similarity=0.585 Sum_probs=142.7
Q ss_pred CCCCCCCCCCCCCCCCCCccccccchhhhhhhHHHhhhhhhhHhHhhhHHHHHHHHHhhhhccccCCChhhhHHHHHHHH
Q psy7109 18 KSPYLDFDPAYLPKTSQPEFIFPEGASKQRGRFELAFSQIGGSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNH 97 (236)
Q Consensus 18 ~~py~~~dp~~Lpt~~~PEfIfpEea~k~Rg~~ee~~~~tG~syl~G~~lGg~~Gl~~G~~~~p~~g~t~KlRln~iLN~ 97 (236)
++| +|.||+||.++ +||+||||++.++|+|.|++|+.||++|++|+++|+++|+++|++++| .+.+.|+|+|++||+
T Consensus 1 l~~-l~~~~~~l~~~-~~~~~~~~g~~~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~-~~~~~k~rln~~ln~ 77 (149)
T TIGR00983 1 LAP-LDKDPEYLVQE-EDELSLLTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGLKETQ-SMPWTKLRLNQILNM 77 (149)
T ss_pred CCC-CCCCcHHHcCc-chhhcCCCCCCCCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCC-CCCcHHHHHHHHHHH
Confidence 367 79999999886 999999999989999999999999999999999999999999999987 566889999999999
Q ss_pred HhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCCCchhHHHHHHhhhhhhhcccccccccccccccccccCCCcccccCcc
Q psy7109 98 IMKHGSATASTLGTIAVMYSSFGVLLQTTRGTDDDFNTLTAATATGMLFRSTGNCLVSSLSSFSLHFCDNKTSAVTVPSI 177 (236)
Q Consensus 98 ~gkrG~~~GNsfGvigllYSg~ec~ie~~RgK~D~~NSIaAGalTGaLyks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (236)
++++++++||+||+|+++|+++||+++++|+|||++|+|+||++||++||++
T Consensus 78 ~~~~g~~~G~~~g~~g~lys~~e~~i~~~R~k~D~~Nsv~AGa~TGal~~~~---------------------------- 129 (149)
T TIGR00983 78 VTRRGPFWGNTLGILALVYNGINSIIEATRGKHDDFNSVAAGALTGALYKST---------------------------- 129 (149)
T ss_pred HHhHhHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHHHHHHHHHHHHhc----------------------------
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHHHHHHHhhhhccCchhhhhhHhHHHHHHHHH
Q psy7109 178 RPLTCSQKLLENIVKERSKRCGLKKCGLGGVVGLGIASLY 217 (236)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 217 (236)
+|+|+|++++++|++++++|
T Consensus 130 --------------------~G~r~~~~g~~~G~~l~~~~ 149 (149)
T TIGR00983 130 --------------------RGLRGMARSGALGATAAGVW 149 (149)
T ss_pred --------------------cChHHHHHHhHHHHHHhhcC
Confidence 89999999999999999986
No 3
>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional
Probab=99.94 E-value=5.9e-27 Score=199.18 Aligned_cols=122 Identities=20% Similarity=0.281 Sum_probs=110.3
Q ss_pred hhhhhHHHh-hhhhhhHhHhhhHHHHHHHHHhhhhccccCCChhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhhh
Q psy7109 45 KQRGRFELA-FSQIGGSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSATASTLGTIAVMYSSFGVLL 123 (236)
Q Consensus 45 k~Rg~~ee~-~~~tG~syl~G~~lGg~~Gl~~G~~~~p~~g~t~KlRln~iLN~~gkrG~~~GNsfGvigllYSg~ec~i 123 (236)
..|..+-.- ..++|.+|++|++.|+++++++|++++| . +.|++.+++.++++++++|++||+||++|+++||++
T Consensus 6 ~~r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp-~----g~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~ 80 (164)
T PTZ00236 6 LSREPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSP-K----GERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTL 80 (164)
T ss_pred hCcCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCC-C----cchHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 334444433 3489999999999999999999999997 3 358999999999999999999999999999999999
Q ss_pred hhcccCCCchhHHHHHHhhhhhhhcccccccccccccccccccCCCcccccCccCCcchhhHHHHHHHHhhhhccCchhh
Q psy7109 124 QTTRGTDDDFNTLTAATATGMLFRSTGNCLVSSLSSFSLHFCDNKTSAVTVPSIRPLTCSQKLLENIVKERSKRCGLKKC 203 (236)
Q Consensus 124 e~~RgK~D~~NSIaAGalTGaLyks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 203 (236)
+++|+|||+||+|+||++||++|+++ .|+|++
T Consensus 81 ~~~R~K~D~~Nsi~AG~~TGa~l~~r------------------------------------------------~G~~~~ 112 (164)
T PTZ00236 81 QYLRGKEDHWNAIASGFFTGGVLAIR------------------------------------------------GGWRSA 112 (164)
T ss_pred HHHHccCchHHHHHHHHHHHHHHHHh------------------------------------------------cChHHH
Confidence 99999999999999999999999999 899999
Q ss_pred hhhHhHHHHHHHHHHH
Q psy7109 204 GLGGVVGLGIASLYVL 219 (236)
Q Consensus 204 ~~~~~~g~~~~~~~~~ 219 (236)
+.++++|+++++++..
T Consensus 113 ~~~a~~Gg~~~~~ie~ 128 (164)
T PTZ00236 113 VRNAIFGGILLGIIEL 128 (164)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999887763
No 4
>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17.
Probab=99.92 E-value=3e-25 Score=189.63 Aligned_cols=110 Identities=17% Similarity=0.313 Sum_probs=105.0
Q ss_pred hhhhHhHhhhHHHHHHHHHhhhhccccCCChhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCCCchhH
Q psy7109 56 QIGGSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSATASTLGTIAVMYSSFGVLLQTTRGTDDDFNT 135 (236)
Q Consensus 56 ~tG~syl~G~~lGg~~Gl~~G~~~~p~~g~t~KlRln~iLN~~gkrG~~~GNsfGvigllYSg~ec~ie~~RgK~D~~NS 135 (236)
.+|.+|.+|++.|++||+++|++++| .+ .|++.++|+++.+++++||+||+|+++|+++||+++++|+|||+||+
T Consensus 16 ~~G~af~~G~~~G~~~g~~~G~rnsp-~g----~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~~R~KeD~~Ns 90 (170)
T TIGR00980 16 DFGGAFAMGTIGGSIFQAFKGFRNSP-KG----EKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVAIRKKEDPWNS 90 (170)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCC-cc----chhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHH
Confidence 89999999999999999999999987 32 37889999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhcccccccccccccccccccCCCcccccCccCCcchhhHHHHHHHHhhhhccCchhhhhhHhHHHHHHH
Q psy7109 136 LTAATATGMLFRSTGNCLVSSLSSFSLHFCDNKTSAVTVPSIRPLTCSQKLLENIVKERSKRCGLKKCGLGGVVGLGIAS 215 (236)
Q Consensus 136 IaAGalTGaLyks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~ 215 (236)
|+||++||++|+++ .|+|.++.++++|+++-+
T Consensus 91 iiAG~~TGa~l~~r------------------------------------------------~G~~a~~~~aa~gg~~la 122 (170)
T TIGR00980 91 IISGFLTGAALAVR------------------------------------------------GGPRAMRGSAILGACILA 122 (170)
T ss_pred HHHHHHHHHHHHhc------------------------------------------------cChHHHHHHHHHHHHHHH
Confidence 99999999999999 899999999999999888
Q ss_pred HHH
Q psy7109 216 LYV 218 (236)
Q Consensus 216 ~~~ 218 (236)
++.
T Consensus 123 ~ie 125 (170)
T TIGR00980 123 VIE 125 (170)
T ss_pred HHH
Confidence 877
No 5
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=99.90 E-value=2.4e-23 Score=165.66 Aligned_cols=126 Identities=22% Similarity=0.377 Sum_probs=115.4
Q ss_pred hHHHhhhhhhhHhHhhhHHHHHHHHHhhhhccccCCChhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhhhhhccc
Q psy7109 49 RFELAFSQIGGSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSATASTLGTIAVMYSSFGVLLQTTRG 128 (236)
Q Consensus 49 ~~ee~~~~tG~syl~G~~lGg~~Gl~~G~~~~p~~g~t~KlRln~iLN~~gkrG~~~GNsfGvigllYSg~ec~ie~~Rg 128 (236)
+.++.+..++.+|+.|++.|++.+.+++....+ ...+.|+|++.+++.++++++++|++||.++++|+++||.++.+|+
T Consensus 2 c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~ 80 (128)
T PF02466_consen 2 CPERILDSTGKGFVAGAVFGGFIGAISAFTRPP-RGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG 80 (128)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-cCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356778899999999999999999998855444 4567788999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHhhhhhhhcccccccccccccccccccCCCcccccCccCCcchhhHHHHHHHHhhhhccCchhhhhhHh
Q psy7109 129 TDDDFNTLTAATATGMLFRSTGNCLVSSLSSFSLHFCDNKTSAVTVPSIRPLTCSQKLLENIVKERSKRCGLKKCGLGGV 208 (236)
Q Consensus 129 K~D~~NSIaAGalTGaLyks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 208 (236)
|||+||+++||++||++|+.+ .|++.++.+++
T Consensus 81 k~D~~N~~~aG~~aGa~~~~~------------------------------------------------~g~~~~~~~~~ 112 (128)
T PF02466_consen 81 KDDPWNSAIAGAAAGAVLGLR------------------------------------------------SGPRGMASGAA 112 (128)
T ss_pred ccccchhHHHHHHHHHHHHhc------------------------------------------------cChHHHHHHHH
Confidence 999999999999999999999 79999999999
Q ss_pred HHHHHHHHHHHHhcC
Q psy7109 209 VGLGIASLYVLWNKR 223 (236)
Q Consensus 209 ~g~~~~~~~~~~~~~ 223 (236)
+++++++++.++.++
T Consensus 113 ~~a~~~~~~~~~~~~ 127 (128)
T PF02466_consen 113 LGAAFAAAVEYYGRM 127 (128)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988764
No 6
>KOG3225|consensus
Probab=99.83 E-value=5.1e-21 Score=162.09 Aligned_cols=106 Identities=18% Similarity=0.187 Sum_probs=93.0
Q ss_pred hhhhhhHHHhhhhhhhHhHhhhHHHHHHHHHhhhhcccc--CCChhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhh
Q psy7109 44 SKQRGRFELAFSQIGGSCMLGAAIGGAEGFYKGLRNTTL--EGQTGKLRRTQLLNHIMKHGSATASTLGTIAVMYSSFGV 121 (236)
Q Consensus 44 ~k~Rg~~ee~~~~tG~syl~G~~lGg~~Gl~~G~~~~p~--~g~t~KlRln~iLN~~gkrG~~~GNsfGvigllYSg~ec 121 (236)
.+-...|+.+..++-.+.|+|.++|+++|+|.+..++.. +....++-+.++++.|++|+.+++++||++|++|++.||
T Consensus 33 ~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg~Ec 112 (168)
T KOG3225|consen 33 MRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSGVEC 112 (168)
T ss_pred HHHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehhHHH
Confidence 355566666677999999999999999999999988431 112345677788999999999999999999999999999
Q ss_pred hhhhcccCCCchhHHHHHHhhhhhhhcc
Q psy7109 122 LLQTTRGTDDDFNTLTAATATGMLFRST 149 (236)
Q Consensus 122 ~ie~~RgK~D~~NSIaAGalTGaLyks~ 149 (236)
+||.+|+|+||+|+++||++||+.+..+
T Consensus 113 ~iE~~RAK~D~~NgaiaG~vtGg~l~~r 140 (168)
T KOG3225|consen 113 LIESFRAKSDWYNGAIAGCVTGGSLGYR 140 (168)
T ss_pred HHHHHHhhhchhcceeeeeeeccchhhc
Confidence 9999999999999999999999999999
No 7
>KOG1652|consensus
Probab=99.79 E-value=5.4e-21 Score=164.44 Aligned_cols=114 Identities=19% Similarity=0.297 Sum_probs=106.6
Q ss_pred hhhhhhHhHhhhHHHHHHHHHhhhhccccCCChhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCCCch
Q psy7109 54 FSQIGGSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSATASTLGTIAVMYSSFGVLLQTTRGTDDDF 133 (236)
Q Consensus 54 ~~~tG~syl~G~~lGg~~Gl~~G~~~~p~~g~t~KlRln~iLN~~gkrG~~~GNsfGvigllYSg~ec~ie~~RgK~D~~ 133 (236)
+.++|.+|.||.+.|.+|++++|++++| .+ +|+...++.+..+.+..|++||+|+.+||.+||++..+|+|||.|
T Consensus 14 v~d~g~afamg~igG~~f~~ikG~~nap-~G----~r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~~R~KeDpw 88 (183)
T KOG1652|consen 14 VDDCGGAFAMGTIGGSVFQLIKGFRNAP-SG----ARLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCALVAIRKKEDPW 88 (183)
T ss_pred eccccchhhhcccccceeeeeeeeecCC-cc----cccccchhhhhccCcccccceeeeechhhHHHHHHHHHhcccchH
Confidence 4589999999999999999999999998 44 389999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhhhhhcccccccccccccccccccCCCcccccCccCCcchhhHHHHHHHHhhhhccCchhhhhhHhHHHHH
Q psy7109 134 NTLTAATATGMLFRSTGNCLVSSLSSFSLHFCDNKTSAVTVPSIRPLTCSQKLLENIVKERSKRCGLKKCGLGGVVGLGI 213 (236)
Q Consensus 134 NSIaAGalTGaLyks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~ 213 (236)
|+|+||++||++++.+ .|++++.-+.++|+++
T Consensus 89 NsivsGa~TGg~La~r------------------------------------------------~g~~a~~~sa~~~g~~ 120 (183)
T KOG1652|consen 89 NSIVSGAATGGLLAAR------------------------------------------------GGPKAMLTSAITGGLL 120 (183)
T ss_pred HHHHHHhhccceeecc------------------------------------------------ccHHHHHHHHHHHHHH
Confidence 9999999999999999 8999999999999988
Q ss_pred HHHHHHH
Q psy7109 214 ASLYVLW 220 (236)
Q Consensus 214 ~~~~~~~ 220 (236)
.+++.-.
T Consensus 121 lamieg~ 127 (183)
T KOG1652|consen 121 LAMIEGL 127 (183)
T ss_pred HHHHHhH
Confidence 8877643
No 8
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.6e-21 Score=164.32 Aligned_cols=128 Identities=24% Similarity=0.301 Sum_probs=119.9
Q ss_pred hhhhhHHHhhhhhhhHhHhhhHHHHHHHHHhhhhccccCCChhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhhhh
Q psy7109 45 KQRGRFELAFSQIGGSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSATASTLGTIAVMYSSFGVLLQ 124 (236)
Q Consensus 45 k~Rg~~ee~~~~tG~syl~G~~lGg~~Gl~~G~~~~p~~g~t~KlRln~iLN~~gkrG~~~GNsfGvigllYSg~ec~ie 124 (236)
..++|...+++.++..++.|..+|++|| |+.++. ...++++|++..+|.++++|++.||+||++|+.|+++||+|+
T Consensus 63 ~~g~f~ssl~y~t~~~~~~g~nfg~vwG---gl~~~i-~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~ 138 (191)
T COG5596 63 PSGGFSSSLAYGTGLVHLLGLNFGGVWG---GLFSTI-DCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIIT 138 (191)
T ss_pred ccccchhhcccccccccccCcccccccc---ceeecc-ccchHHHHHhhccccccccccccccccceeeeecccchhhhh
Confidence 4577888899999999999999999999 888665 456889999999999999999999999999999999999999
Q ss_pred hcccCCCchhHHHHHHhhhhhhhcccccccccccccccccccCCCcccccCccCCcchhhHHHHHHHHhhhhccCchhhh
Q psy7109 125 TTRGTDDDFNTLTAATATGMLFRSTGNCLVSSLSSFSLHFCDNKTSAVTVPSIRPLTCSQKLLENIVKERSKRCGLKKCG 204 (236)
Q Consensus 125 ~~RgK~D~~NSIaAGalTGaLyks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 204 (236)
.+|+|||+.|+|.||+.||++|+++ .|++++.
T Consensus 139 ~~r~k~d~~~~iaaG~~TGa~~~~~------------------------------------------------~g~qa~~ 170 (191)
T COG5596 139 ALRAKHDIANAIAAGAFTGAALASS------------------------------------------------AGPQAMP 170 (191)
T ss_pred hhhhccccchhhhhhhhhhHHHHhh------------------------------------------------ccccccc
Confidence 9999999999999999999999999 8999999
Q ss_pred hhHhHHHHHHHHHHHHhcCC
Q psy7109 205 LGGVVGLGIASLYVLWNKRD 224 (236)
Q Consensus 205 ~~~~~g~~~~~~~~~~~~~~ 224 (236)
++++.=...++.|.++.+|.
T Consensus 171 ~~~a~~aa~s~~~~~~~~~~ 190 (191)
T COG5596 171 MGGAGFAAFSAGITLAMKSE 190 (191)
T ss_pred cCccchhhhhhhHHhhhhcc
Confidence 99999999999999988774
No 9
>KOG4608|consensus
Probab=98.34 E-value=9.9e-08 Score=86.33 Aligned_cols=101 Identities=18% Similarity=0.142 Sum_probs=78.2
Q ss_pred hHHHhhh--hhhhHhHhhhHHHHHHHHHhhhhcccc--C-------CChhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHh
Q psy7109 49 RFELAFS--QIGGSCMLGAAIGGAEGFYKGLRNTTL--E-------GQTGKLRRTQLLNHIMKHGSATASTLGTIAVMYS 117 (236)
Q Consensus 49 ~~ee~~~--~tG~syl~G~~lGg~~Gl~~G~~~~p~--~-------g~t~KlRln~iLN~~gkrG~~~GNsfGvigllYS 117 (236)
.||.+-. -.-+++++|.+.||+-+....-..... + -+-.|....+.+....|.|..||-..|.+...|-
T Consensus 67 s~e~a~v~~v~a~~flgG~~~ggat~s~~A~~~y~~nsqa~ky~sh~davk~~~d~air~farGgf~~G~R~alfttSff 146 (270)
T KOG4608|consen 67 SKELANVCKVAATAFLGGWVYGGATASIHAKQQYIENSQAEKYHSHFDAVKSAHDAAIRGFARGGFRWGWRTALFTTSFF 146 (270)
T ss_pred chhhHHHHHHHHHhhhhheeeccchHhHHHHHHHHhccHHHHhhChHHHHHHHHHHHHHHHhhccccceeEEeeehhhHH
Confidence 4444322 556778888888888777655332110 1 1223445566777788999999999999999999
Q ss_pred hhhhhhhhcccCCCchhHHHHHHhhhhhhhcc
Q psy7109 118 SFGVLLQTTRGTDDDFNTLTAATATGMLFRST 149 (236)
Q Consensus 118 g~ec~ie~~RgK~D~~NSIaAGalTGaLyks~ 149 (236)
++...+..||+|+|.+|-++||++||++|+-.
T Consensus 147 ~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~ 178 (270)
T KOG4608|consen 147 TLNTSLNVYRGKDALSHFVAAGAVTGSVFRIN 178 (270)
T ss_pred HHHHHHHHHcCchhhhhhhccccceeeeEEee
Confidence 99999999999999999999999999999999
No 10
>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]
Probab=94.02 E-value=0.0064 Score=53.56 Aligned_cols=89 Identities=11% Similarity=-0.081 Sum_probs=59.4
Q ss_pred hhhhHhHhhhHHHHHHHHHhhhhccccCCChhhhHHHHHHHHHhhhhhhhhhHHH-HHHHHHhhhhhhhhhcccCCCchh
Q psy7109 56 QIGGSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSATASTLG-TIAVMYSSFGVLLQTTRGTDDDFN 134 (236)
Q Consensus 56 ~tG~syl~G~~lGg~~Gl~~G~~~~p~~g~t~KlRln~iLN~~gkrG~~~GNsfG-vigllYSg~ec~ie~~RgK~D~~N 134 (236)
+.+.++-++.+.+.++.-++|.+..+. .. +...-+...+.+.+-.|.+|| +||.+++.++|....+|-++|.+|
T Consensus 37 ~~~~~~~~~~i~k~~~s~l~G~~~g~~-~g----~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n 111 (191)
T COG5596 37 DFMKAFSYSCIGKSALSGLKGFRLGGP-SG----GFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNN 111 (191)
T ss_pred hhccchhhcchhhhhhhcccccccccc-cc----cchhhcccccccccccCccccccccceeeccccchHHHHHhhcccc
Confidence 344444444555555555555554331 11 122233333445556677777 999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcc
Q psy7109 135 TLTAATATGMLFRST 149 (236)
Q Consensus 135 SIaAGalTGaLyks~ 149 (236)
....|..||..+.-.
T Consensus 112 ~~~rg~ftG~n~Gvl 126 (191)
T COG5596 112 AGKRGFFTGKNLGVL 126 (191)
T ss_pred cccccccccccccee
Confidence 999999999776655
No 11
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=93.82 E-value=0.068 Score=40.06 Aligned_cols=59 Identities=25% Similarity=0.307 Sum_probs=43.8
Q ss_pred hhhhhhhHhHhhhHHHHHHHHHhhhhccccCCChhhhHHHHHHHHHhhhhhhhhhHHHHHHHH
Q psy7109 53 AFSQIGGSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSATASTLGTIAVM 115 (236)
Q Consensus 53 ~~~~tG~syl~G~~lGg~~Gl~~G~~~~p~~g~t~KlRln~iLN~~gkrG~~~GNsfGvigll 115 (236)
++.++-+++++|+.+|++.|++-|..+.- ..+.|-+.+++.+++.....|-+||.+-.+
T Consensus 3 c~~kikmG~~MG~~VG~~~G~l~G~~~~~----r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~i 61 (67)
T PF10247_consen 3 CFDKIKMGFMMGGAVGGAFGALFGTFSAF----RYGARGRGLMRTLGKYMLGSGATFGFFMSI 61 (67)
T ss_pred HHHHHHHHHHHhhHHHhhhhhhhhhHHHh----ccCCCCcchHhHHhHHHhcchhHHHHHHhh
Confidence 45578889999998888888888776642 223455678888999999888888865443
No 12
>KOG4096|consensus
Probab=92.32 E-value=0.16 Score=38.86 Aligned_cols=66 Identities=27% Similarity=0.245 Sum_probs=46.3
Q ss_pred hhhhhhhHhHhhhHHHHHHHHHhhhhccccCCChhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhh
Q psy7109 53 AFSQIGGSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSATASTLGTIAVMYSSFGVL 122 (236)
Q Consensus 53 ~~~~tG~syl~G~~lGg~~Gl~~G~~~~p~~g~t~KlRln~iLN~~gkrG~~~GNsfGvigllYSg~ec~ 122 (236)
++.++=+++++|..+|+..|++.|-...- ..++|=...++.++|...+.|.+||.+-.+=+++.|.
T Consensus 7 c~dKikmG~~mG~avG~a~G~lfGgf~~l----R~g~~g~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~ 72 (75)
T KOG4096|consen 7 CFDKIKMGLMMGGAVGGATGALFGGFAAL----RYGPRGRGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG 72 (75)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhccchhhe----eecCChhHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence 34477777888877777777766654432 1233556788999999999999999776666666654
No 13
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=89.79 E-value=0.96 Score=33.33 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=31.2
Q ss_pred hHhhhHHHHHHHHHhhhhccccCCChhhhHHHHHHHHHhhhhhh
Q psy7109 61 CMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSA 104 (236)
Q Consensus 61 yl~G~~lGg~~Gl~~G~~~~p~~g~t~KlRln~iLN~~gkrG~~ 104 (236)
|+.|+++|++.|..-|+.-+|..|...|.++....+.+......
T Consensus 1 F~~g~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~~~~~ 44 (74)
T PF12732_consen 1 FLLGFLAGAAAGAAAGLLFAPKSGKETREKLKDKAEDLKDKAKD 44 (74)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 56788888888888888878866666666777766666555443
No 14
>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23.
Probab=88.88 E-value=1.1 Score=37.98 Aligned_cols=79 Identities=19% Similarity=0.140 Sum_probs=45.2
Q ss_pred CCCCCCCccccccchhhhh---hhHHHhhh-hhhhHhHhhhHHHHHHHHHhhhhccccCCChhhhHHHHHHHHHhhhhhh
Q psy7109 29 LPKTSQPEFIFPEGASKQR---GRFELAFS-QIGGSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSA 104 (236)
Q Consensus 29 Lpt~~~PEfIfpEea~k~R---g~~ee~~~-~tG~syl~G~~lGg~~Gl~~G~~~~p~~g~t~KlRln~iLN~~gkrG~~ 104 (236)
||+ +|||||+||...-- ..=.+-.. +.=....+..++|.+.|...|+++.- ...+.....+.-+|.+-+...+
T Consensus 4 l~~--~~~~l~~~~~~~~~~~g~~~~R~~~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~-~~~~~~~~~k~rln~~ln~~~~ 80 (149)
T TIGR00983 4 LDK--DPEYLVQEEDELSLLTGANPSRGWFEDLCFGTGTCYLTGLAIGALNGLRLGL-KETQSMPWTKLRLNQILNMVTR 80 (149)
T ss_pred CCC--CcHHHcCcchhhcCCCCCCCCCChhhhhhhhHhHHHHHHHHHHHHHHHHHHH-hhCCCCCcHHHHHHHHHHHHHh
Confidence 677 59999999862100 00112222 44445566678899999999998754 2222222334556666666555
Q ss_pred hhhHHH
Q psy7109 105 TASTLG 110 (236)
Q Consensus 105 ~GNsfG 110 (236)
-|-++|
T Consensus 81 ~g~~~G 86 (149)
T TIGR00983 81 RGPFWG 86 (149)
T ss_pred HhHHHH
Confidence 555444
No 15
>KOG1398|consensus
Probab=74.35 E-value=3.1 Score=40.94 Aligned_cols=45 Identities=16% Similarity=0.300 Sum_probs=39.8
Q ss_pred hhhhhhhhHHHHHHHHHhhhhhhhhhcccCCCchhHHHHHHhhhh
Q psy7109 100 KHGSATASTLGTIAVMYSSFGVLLQTTRGTDDDFNTLTAATATGM 144 (236)
Q Consensus 100 krG~~~GNsfGvigllYSg~ec~ie~~RgK~D~~NSIaAGalTGa 144 (236)
|...++|-=+|.+.++|.++-|.+.+++.+||..|+|.||.+++.
T Consensus 297 renlqlg~FlgsfvfIfkatsC~lr~v~n~dd~l~aifAgglAs~ 341 (460)
T KOG1398|consen 297 RENLQLGSFLGSFVFIFKATSCALRKVANKDDKLVAIFAGGLASL 341 (460)
T ss_pred cccchhhHHHHHHHHHHHhHHHHHHHhccCcHHHHHHHHhhhhhh
Confidence 555667777889999999999999999999999999999999663
No 16
>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []. The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].
Probab=73.94 E-value=20 Score=28.16 Aligned_cols=27 Identities=22% Similarity=0.119 Sum_probs=23.5
Q ss_pred hhhhhhHhHhhhHHHHHHHHHhhhhcc
Q psy7109 54 FSQIGGSCMLGAAIGGAEGFYKGLRNT 80 (236)
Q Consensus 54 ~~~tG~syl~G~~lGg~~Gl~~G~~~~ 80 (236)
..++-.+.+.|++.|.++|.+.+..+.
T Consensus 3 ~~~~~~~~~~g~~~G~~~G~~~~~~~~ 29 (128)
T PF02466_consen 3 PERILDSTGKGFVAGAVFGGFIGAISA 29 (128)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447888999999999999999999865
No 17
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=71.53 E-value=15 Score=30.17 Aligned_cols=57 Identities=26% Similarity=0.286 Sum_probs=38.9
Q ss_pred hhHhHhhhHHHHHHHHHhhhhccccCCChhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHhh
Q psy7109 58 GGSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSATASTLGTIAVMYSS 118 (236)
Q Consensus 58 G~syl~G~~lGg~~Gl~~G~~~~p~~g~t~KlRln~iLN~~gkrG~~~GNsfGvigllYSg 118 (236)
+-.|+.|.++||+.|..-++.-+|..|. .+| ..++..+.+-+-.+.-.+.=..++.-
T Consensus 4 ~~~~l~G~liGgiiGa~aaLL~AP~sGk--elR--~~~K~~~~~~~~~ae~~~~~~~~~a~ 60 (115)
T COG4980 4 GKDFLFGILIGGIIGAAAALLFAPKSGK--ELR--KKLKKSGDALFELAEDKGTDILMIAD 60 (115)
T ss_pred cchHHHHHHHHHHHHHHHHHHhCCcccH--HHH--HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3568999999999999999998884443 223 66666666666666555555555544
No 18
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=67.73 E-value=7.9 Score=29.93 Aligned_cols=31 Identities=16% Similarity=0.084 Sum_probs=27.1
Q ss_pred chhhhhhHhHHHHHHHHHHHHhcCCcccccc
Q psy7109 200 LKKCGLGGVVGLGIASLYVLWNKRDSLSDFG 230 (236)
Q Consensus 200 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 230 (236)
.+.+.+++++|+.-+.++...|+..++..+.
T Consensus 55 ~~~~~~a~~ig~~gGfl~ayqrS~~Rf~G~~ 85 (86)
T PF10785_consen 55 GPAMRLAGAIGFFGGFLLAYQRSSLRFMGFT 85 (86)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhcCCC
Confidence 6788899999999999999999999988764
No 19
>KOG1398|consensus
Probab=52.77 E-value=1.2e+02 Score=30.31 Aligned_cols=139 Identities=17% Similarity=0.111 Sum_probs=90.1
Q ss_pred hhhhHhHhh----hHHHHHHHHHhhhhccccCCChhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCCC
Q psy7109 56 QIGGSCMLG----AAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSATASTLGTIAVMYSSFGVLLQTTRGTDD 131 (236)
Q Consensus 56 ~tG~syl~G----~~lGg~~Gl~~G~~~~p~~g~t~KlRln~iLN~~gkrG~~~GNsfGvigllYSg~ec~ie~~RgK~D 131 (236)
.+--+.+.+ ..++.++-+++-++.. +....+.-...+...+-+.+..++.+.+ .|-.+.|.+.+.+||.-
T Consensus 34 a~~~~ll~~~~~~l~~y~~~ya~~l~~~~--r~~s~~d~~~k~~~~~cqs~lflvtn~~----~f~al~C~lRkwlgkft 107 (460)
T KOG1398|consen 34 ALCQSLLLSYGVRLGIYILLYAFKLARGQ--RYSSLLDLDLKVREEACQSGLFLVTNTG----SFHALRCCLRKWLGKFT 107 (460)
T ss_pred HHHHHHHhhcceehhhHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHhhceeeeechH----HHHHHHHHHHHHhcccC
Confidence 444444444 3455555555555442 2223333355566677777777776666 67788899999999999
Q ss_pred chhHHHHHHhhhhhhhcccccccccccccccccccCCCcccccCccCCcchhhHHHHHH----HHhhhhccCchhhhhhH
Q psy7109 132 DFNTLTAATATGMLFRSTGNCLVSSLSSFSLHFCDNKTSAVTVPSIRPLTCSQKLLENI----VKERSKRCGLKKCGLGG 207 (236)
Q Consensus 132 ~~NSIaAGalTGaLyks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~ 207 (236)
.+|+..+|++.+.-.+.= |.-|+-|||--- +|.|. .+...+-.|+-...--|
T Consensus 108 p~t~glv~s~las~iaiL----------------------vErksRRplltl--ylanlA~e~~~~~a~~hgwvr~~~~G 163 (460)
T KOG1398|consen 108 PLTSGLVGSVLASSIAIL----------------------VERKSRRPLLTL--YLANLAYESAKSKAKFHGWVRHWRHG 163 (460)
T ss_pred cccHHHHHHHHhhhhhhh----------------------hccccccchHHH--HHHHHHHHHHHHHHHhceeeEecCCC
Confidence 999999998865544433 334777887532 34444 34445567777766666
Q ss_pred ---hHHHHHHHHHHHHhcCC
Q psy7109 208 ---VVGLGIASLYVLWNKRD 224 (236)
Q Consensus 208 ---~~g~~~~~~~~~~~~~~ 224 (236)
..|.+.|.+-.++..+.
T Consensus 164 ~~llfg~~~aal~yi~~~g~ 183 (460)
T KOG1398|consen 164 DSLLFGLACAALMYIFIMGP 183 (460)
T ss_pred CchhhhHHHHHHHHHHhcCC
Confidence 88999888877776665
No 20
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.71 E-value=34 Score=28.31 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=19.4
Q ss_pred cCchhhhhhHhHHHHHHHHHHHHhcCCc
Q psy7109 198 CGLKKCGLGGVVGLGIASLYVLWNKRDS 225 (236)
Q Consensus 198 ~g~~~~~~~~~~g~~~~~~~~~~~~~~~ 225 (236)
.|+--+.++|++|.++.-+|++++.|.+
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556677888888888788888765443
No 21
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=32.69 E-value=70 Score=25.83 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=16.8
Q ss_pred chhhhhhHhHHHHHHHHHHHHhc
Q psy7109 200 LKKCGLGGVVGLGIASLYVLWNK 222 (236)
Q Consensus 200 ~~~~~~~~~~g~~~~~~~~~~~~ 222 (236)
.+.+++|+++|+++.+++-..++
T Consensus 74 ~~ga~~GAa~Ga~~G~~~g~~~~ 96 (118)
T PF13436_consen 74 GRGAAIGAAAGAAVGAAAGAARG 96 (118)
T ss_pred ccchHHHHHHHHHHHHHhhhhhh
Confidence 47788888888888777665544
No 22
>PF04418 DUF543: Domain of unknown function (DUF543); InterPro: IPR007512 This family of short eukaryotic proteins has no known function. Most of the members of this family are only 80 amino acid residues long. However the Arabidopsis homologue is over 300 residues long. These proteins contain a conserved N-terminal cysteine and a conserved motif GXGXGXG in the carboxy terminal half that may be functionally important.
Probab=32.64 E-value=91 Score=23.72 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=22.6
Q ss_pred hhhhhHHHhhhhhhhHhHhhhHHHHHHHHH
Q psy7109 45 KQRGRFELAFSQIGGSCMLGAAIGGAEGFY 74 (236)
Q Consensus 45 k~Rg~~ee~~~~tG~syl~G~~lGg~~Gl~ 74 (236)
.-.+.|+.++.++-.=...|.++|++++++
T Consensus 17 ~~~~kwD~cl~~~l~k~~~G~~~G~~~s~l 46 (75)
T PF04418_consen 17 ELGEKWDRCLSDTLVKTGLGFGIGVVFSLL 46 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 334689999887777777777788787774
No 23
>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain. An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].
Probab=31.45 E-value=1e+02 Score=23.11 Aligned_cols=53 Identities=17% Similarity=0.203 Sum_probs=33.4
Q ss_pred HHHhhhhhhhHhHhhhHHHHHHHHHhhhhccccCCChhhhHHHHHHHHHhhhhhhhh
Q psy7109 50 FELAFSQIGGSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSATA 106 (236)
Q Consensus 50 ~ee~~~~tG~syl~G~~lGg~~Gl~~G~~~~p~~g~t~KlRln~iLN~~gkrG~~~G 106 (236)
|++.--..-++...|...|.++|.+..++.-+ ++ +..++.+=+.+-..+..+|
T Consensus 4 ~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~-~~---~~~~~~lg~~~l~sg~tFG 56 (67)
T PF10247_consen 4 FDKIKMGFMMGGAVGGAFGALFGTFSAFRYGA-RG---RGLMRTLGKYMLGSGATFG 56 (67)
T ss_pred HHHHHHHHHHhhHHHhhhhhhhhhHHHhccCC-CC---cchHhHHhHHHhcchhHHH
Confidence 44444455677889999999999999999865 22 2344444444444444433
No 24
>PF11981 DUF3482: Domain of unknown function (DUF3482); InterPro: IPR021871 This presumed domain is functionally uncharacterised. This domain is found in bacteria and eukaryotes. This domain is typically between 289 to 301 amino acids in length. This domain is found associated with PF01926 from PFAM.
Probab=27.84 E-value=66 Score=30.05 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=16.4
Q ss_pred CchhhhhhHhHHHHHHHHHHHH
Q psy7109 199 GLKKCGLGGVVGLGIASLYVLW 220 (236)
Q Consensus 199 g~~~~~~~~~~g~~~~~~~~~~ 220 (236)
|=-..|.|.++|++++++|.-+
T Consensus 167 gG~SLG~gaaiGal~Gg~~~~~ 188 (292)
T PF11981_consen 167 GGLSLGAGAAIGALAGGAWQGG 188 (292)
T ss_pred hhhhhHHHHHHHHHHHHHHhhh
Confidence 3346788888999988886544
No 25
>PRK10417 nikC nickel transporter permease NikC; Provisional
Probab=27.60 E-value=1.2e+02 Score=27.35 Aligned_cols=44 Identities=18% Similarity=0.153 Sum_probs=30.5
Q ss_pred CCccccccchhhhhhhHHHhhh-------hhhhHhHhhhHHHHHHHHHhhhh
Q psy7109 34 QPEFIFPEGASKQRGRFELAFS-------QIGGSCMLGAAIGGAEGFYKGLR 78 (236)
Q Consensus 34 ~PEfIfpEea~k~Rg~~ee~~~-------~tG~syl~G~~lGg~~Gl~~G~~ 78 (236)
+.++.|-.+. -.|+.+.+... -...+.+.+.++|...|+..|.+
T Consensus 44 s~~h~lGTD~-~Grdv~s~l~~g~~~TL~~~~~a~~l~~~iG~~lG~~ag~~ 94 (272)
T PRK10417 44 DAQHWLGTDH-LGRDIFSRLMAGTRVSLGSVMACLLLVLALGLVIGGSAGLL 94 (272)
T ss_pred CCCCCCCCCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4588888886 67888877766 34445556667777777777765
No 26
>KOG4431|consensus
Probab=26.68 E-value=1.3e+02 Score=24.40 Aligned_cols=46 Identities=24% Similarity=0.300 Sum_probs=32.5
Q ss_pred ccCccC-CcchhhHHHHHHHHhhhhccCchhhhhhHhHHHHHHHHHHHHhcC
Q psy7109 173 TVPSIR-PLTCSQKLLENIVKERSKRCGLKKCGLGGVVGLGIASLYVLWNKR 223 (236)
Q Consensus 173 ~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~ 223 (236)
.+|++. ++.-..||+.+..+ .-+-..|+.+.+|.+++++|.+-+..
T Consensus 8 s~~~~~ed~~~~ekl~rk~ke-----nP~VPlG~l~t~aal~~g~y~~r~rG 54 (100)
T KOG4431|consen 8 SLPSYEEDMSQKEKLLRKAKE-----NPLVPLGCLGTTAALTAGLYKFRSRG 54 (100)
T ss_pred CCCCCcchhhHHHHHHHHHHh-----CCCeeehHHHHHHHHHHHhhhhhhcc
Confidence 344433 34556666655544 88999999999999999999987443
No 27
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=26.25 E-value=1.5e+02 Score=31.12 Aligned_cols=68 Identities=24% Similarity=0.285 Sum_probs=0.0
Q ss_pred hHhHhhhHHHHHHHHHhhhhccccCCChhhhHHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhhhhhcccCCCchhHHHH
Q psy7109 59 GSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSATASTLGTIAVMYSSFGVLLQTTRGTDDDFNTLTA 138 (236)
Q Consensus 59 ~syl~G~~lGg~~Gl~~G~~~~p~~g~t~KlRln~iLN~~gkrG~~~GNsfGvigllYSg~ec~ie~~RgK~D~~NSIaA 138 (236)
.||+.|+++|++.|+..|+.-.- .. ++.-....+|+ +|
T Consensus 189 ~a~~gG~~~Gaa~Gv~~Gli~~l-~~----------------------~~~~~~~~~~a-------------------f~ 226 (764)
T TIGR02865 189 ISYIGGSGAGAAGGVVIGVILGL-AN----------------------NANLYQIGVFG-------------------FA 226 (764)
T ss_pred HHHhcCchHhHHHHHHHHHHHHh-cC----------------------ccHHHHHHHHH-------------------HH
Q ss_pred HHhhhhhhhcccccccccccccccccccCCCcccccCccCCcchhhHHHHHHHHhhhhccCchhhhhhHhHHHHHHHHHH
Q psy7109 139 ATATGMLFRSTGNCLVSSLSSFSLHFCDNKTSAVTVPSIRPLTCSQKLLENIVKERSKRCGLKKCGLGGVVGLGIASLYV 218 (236)
Q Consensus 139 GalTGaLyks~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~ 218 (236)
|.+ ++++|-. |==.+++|.++|.++.++|.
T Consensus 227 GLl-aG~fk~~-------------------------------------------------gK~g~~~g~~l~~~il~~y~ 256 (764)
T TIGR02865 227 GLL-GGIFKEL-------------------------------------------------GKIGTGIGYLVGFLILAFYT 256 (764)
T ss_pred HHH-HHhhccC-------------------------------------------------CcceeeHHHHHHHHHHHHHh
No 28
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=25.46 E-value=1.1e+02 Score=24.64 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=11.9
Q ss_pred hhhhHhHhhhHHHHHHHHHhhh
Q psy7109 56 QIGGSCMLGAAIGGAEGFYKGL 77 (236)
Q Consensus 56 ~tG~syl~G~~lGg~~Gl~~G~ 77 (236)
.+..+-++|+++|++.|.+.|-
T Consensus 51 ~~~~ga~~GA~~GA~~Ga~~G~ 72 (118)
T PF13436_consen 51 NTAGGAAIGAAAGAAIGAIIGG 72 (118)
T ss_pred hHHHHHHHHHHHHHHHHhhcCC
Confidence 4445555555555555555444
No 29
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=25.36 E-value=90 Score=28.29 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=9.5
Q ss_pred HHHHHHhhhhhhhcc
Q psy7109 135 TLTAATATGMLFRST 149 (236)
Q Consensus 135 SIaAGalTGaLyks~ 149 (236)
..++|+++|+...+.
T Consensus 89 ga~~Ga~~G~~~g~~ 103 (215)
T PF05818_consen 89 GALAGAATGAAIGAY 103 (215)
T ss_pred hHHHHhHHhhhhccc
Confidence 556666677666644
No 30
>KOG0754|consensus
Probab=25.21 E-value=37 Score=31.95 Aligned_cols=37 Identities=16% Similarity=0.171 Sum_probs=23.6
Q ss_pred HHHHHHHHhhhhhhhhhcccCCCchhHHHHHHhhhhh
Q psy7109 109 LGTIAVMYSSFGVLLQTTRGTDDDFNTLTAATATGML 145 (236)
Q Consensus 109 fGvigllYSg~ec~ie~~RgK~D~~NSIaAGalTGaL 145 (236)
+|-.|++|+.=+..=+.-......+|-+++|+++|.+
T Consensus 179 ~gYFG~y~~vrn~vP~~k~~~~~~~~~~i~g~l~gtl 215 (294)
T KOG0754|consen 179 MGYFGFYYQVRNSVPSAKDKTLEIRRKLIIGALAGTL 215 (294)
T ss_pred cchhhhHHHHHhhCCCccCcHHHHHHHHHHHHhhhhh
Confidence 4566666666555544333334468999999997764
No 31
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=25.14 E-value=1.6e+02 Score=20.30 Aligned_cols=22 Identities=18% Similarity=0.250 Sum_probs=16.6
Q ss_pred chhhhhhHhHHHHHHHHHHHHh
Q psy7109 200 LKKCGLGGVVGLGIASLYVLWN 221 (236)
Q Consensus 200 ~~~~~~~~~~g~~~~~~~~~~~ 221 (236)
.+.+.+|+++|..+.+.+--..
T Consensus 21 ~~ga~iGa~vGa~~G~~ig~~~ 42 (46)
T PF13488_consen 21 GKGAAIGAAVGAAVGAAIGNYM 42 (46)
T ss_pred hhhHHHHHHHHHHHHHHHHHHH
Confidence 5778888888888888765443
No 32
>PF00153 Mito_carr: Mitochondrial carrier protein; InterPro: IPR018108 A variety of substrate carrier proteins that are involved in energy transfer are found in the inner mitochondrial membrane or integral to the membrane of other eukaryotic organelles such as the peroxisome [, , , , , ]. Such proteins include: ADP, ATP carrier protein (ADP/ATP translocase); 2-oxoglutarate/malate carrier protein; phosphate carrier protein; tricarboxylate transport protein (or citrate transport protein); Graves disease carrier protein; yeast mitochondrial proteins MRS3 and MRS4; yeast mitochondrial FAD carrier protein; and many others. Structurally, these proteins can consist of up to three tandem repeats of a domain of approximately 100 residues, each domain containing two transmembrane regions.; PDB: 2LCK_A 2C3E_A 1OKC_A.
Probab=24.96 E-value=1.7e+02 Score=20.94 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=14.6
Q ss_pred CCchhHHHHHHhhhhhhhcc
Q psy7109 130 DDDFNTLTAATATGMLFRST 149 (236)
Q Consensus 130 ~D~~NSIaAGalTGaLyks~ 149 (236)
..+++.+++|+++|++-..-
T Consensus 2 ~~~~~~~~~g~~ag~~~~~~ 21 (95)
T PF00153_consen 2 LSFFANFIAGALAGAISTLV 21 (95)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 45778888998888875543
No 33
>KOG4505|consensus
Probab=24.26 E-value=2e+02 Score=28.54 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=30.7
Q ss_pred hhhhhhhhHHHHHHHHHhhhhhhhhhcccCCCchhHHHHHHh
Q psy7109 100 KHGSATASTLGTIAVMYSSFGVLLQTTRGTDDDFNTLTAATA 141 (236)
Q Consensus 100 krG~~~GNsfGvigllYSg~ec~ie~~RgK~D~~NSIaAGal 141 (236)
|+..-=..+|=+..++-+.+-.++..+-|.||..-+..||++
T Consensus 235 kkrlid~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~ 276 (467)
T KOG4505|consen 235 KKRLIDRESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIV 276 (467)
T ss_pred HhccccHHHHHHHHHHHHHHHhhhhheechhHHHHHHHhhhh
Confidence 333333456667777777788888899999999888887765
No 34
>PRK15082 glutathione ABC transporter permease GsiD; Provisional
Probab=24.16 E-value=1.3e+02 Score=27.58 Aligned_cols=44 Identities=25% Similarity=0.262 Sum_probs=28.1
Q ss_pred CCccccccchhhhhhhHHHhhhhhh-------hHhHhhhHHHHHHHHHhhhh
Q psy7109 34 QPEFIFPEGASKQRGRFELAFSQIG-------GSCMLGAAIGGAEGFYKGLR 78 (236)
Q Consensus 34 ~PEfIfpEea~k~Rg~~ee~~~~tG-------~syl~G~~lGg~~Gl~~G~~ 78 (236)
+.++.|-.+. -.|+-|.+.+..+. .+.+.+.++|...|+..|.+
T Consensus 77 s~~h~lGTD~-~Grdv~srl~~g~~~TL~ial~a~~ia~iiG~~lG~~ag~~ 127 (301)
T PRK15082 77 SLQHWFGVDS-LGRDIFSRILVGARISLAAGFFSVAIGAAIGTVLGLLAGYY 127 (301)
T ss_pred CCCCCCCCCC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5688888886 67888888766322 34444555666666655554
No 35
>PRK10132 hypothetical protein; Provisional
Probab=23.62 E-value=70 Score=25.82 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=17.5
Q ss_pred cCchhhhhhHhHHHHHHHH
Q psy7109 198 CGLKKCGLGGVVGLGIASL 216 (236)
Q Consensus 198 ~g~~~~~~~~~~g~~~~~~ 216 (236)
.-|+.++++++||++++.+
T Consensus 85 ~Pw~svgiaagvG~llG~L 103 (108)
T PRK10132 85 RPWCSVGTAAAVGIFIGAL 103 (108)
T ss_pred CcHHHHHHHHHHHHHHHHH
Confidence 6899999999999999877
No 36
>PF09955 DUF2189: Predicted integral membrane protein (DUF2189); InterPro: IPR018692 This family includes several hypothetical prokaryotic proteins. Some are described as putative cytochrome c oxidases.
Probab=23.24 E-value=3.3e+02 Score=22.18 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=19.4
Q ss_pred hccCchhhhhhHhHHHHHHHHHH
Q psy7109 196 KRCGLKKCGLGGVVGLGIASLYV 218 (236)
Q Consensus 196 ~~~g~~~~~~~~~~g~~~~~~~~ 218 (236)
++.|+.-..++.++|+++|.+-.
T Consensus 94 t~~g~~~li~~~~vG~v~A~i~f 116 (128)
T PF09955_consen 94 TPRGWGFLIVGTLVGGVFAAIVF 116 (128)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHH
Confidence 55799999999999999887644
No 37
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=23.13 E-value=1.8e+02 Score=25.72 Aligned_cols=20 Identities=15% Similarity=0.222 Sum_probs=12.5
Q ss_pred hhhhhhHhHHHHHHHHHHHH
Q psy7109 201 KKCGLGGVVGLGIASLYVLW 220 (236)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~~ 220 (236)
+.+++|+++|+++++.+-.+
T Consensus 61 ~~a~~ga~~G~~~G~~~g~~ 80 (219)
T PRK10510 61 KGALIGAAAGAALGGGVGYY 80 (219)
T ss_pred chhhhHhHHHhhhhhhhhhh
Confidence 45667777776666655544
No 38
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=22.97 E-value=3.7e+02 Score=27.93 Aligned_cols=19 Identities=26% Similarity=0.379 Sum_probs=11.4
Q ss_pred hHhhhHHHHHHHHH--hhhhc
Q psy7109 61 CMLGAAIGGAEGFY--KGLRN 79 (236)
Q Consensus 61 yl~G~~lGg~~Gl~--~G~~~ 79 (236)
++.|+++|++|.++ .|+..
T Consensus 289 ~i~g~i~g~~~~~lV~~G~H~ 309 (627)
T PRK09824 289 AFAGAVMGAFWQVFVIFGLHW 309 (627)
T ss_pred HHHHHHHHHHHHHHHHhccch
Confidence 55666777777663 45543
No 39
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=22.50 E-value=54 Score=23.69 Aligned_cols=33 Identities=36% Similarity=0.527 Sum_probs=24.2
Q ss_pred cccccccCCCcccccCccCC-cchhhHHHHHHHH
Q psy7109 160 FSLHFCDNKTSAVTVPSIRP-LTCSQKLLENIVK 192 (236)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 192 (236)
|.+...++.+-.|++|+-|+ +.+.+-+.|.|..
T Consensus 33 ~~~~~~~~~~~~v~vP~~R~Di~~~~DliEEiaR 66 (70)
T PF03484_consen 33 FKVEKIDGDTLEVTVPSYRFDIEHEEDLIEEIAR 66 (70)
T ss_dssp -EEEE-CTTEEEEEEETTSTT-SSHHHHHHHHHH
T ss_pred CEEEECCCCEEEEEcCCCcCCcCcccHHHHHHHH
Confidence 44445577788999999997 7888889998875
No 40
>PLN02975 complex I subunit
Probab=22.15 E-value=1.2e+02 Score=24.34 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=25.6
Q ss_pred hhhhhhHhHHHHHHHHHHHHhcCCcccccc
Q psy7109 201 KKCGLGGVVGLGIASLYVLWNKRDSLSDFG 230 (236)
Q Consensus 201 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 230 (236)
..+-+++++|+.-..+|..-++..++..|.
T Consensus 57 ~~mr~ag~iG~~gGf~~aYq~S~~Rf~G~~ 86 (97)
T PLN02975 57 PSMVTGGLIGLMGGFMYAYQNSAGRLMGFF 86 (97)
T ss_pred hHHHHHHHHHHhhhHHhhhcccchhhcCCC
Confidence 346788999999999999999999988876
No 41
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=22.08 E-value=75 Score=28.96 Aligned_cols=19 Identities=11% Similarity=0.127 Sum_probs=12.6
Q ss_pred CchhHHHHHHhhhhhhhcc
Q psy7109 131 DDFNTLTAATATGMLFRST 149 (236)
Q Consensus 131 D~~NSIaAGalTGaLyks~ 149 (236)
|..+..+.|+.+|++....
T Consensus 38 ~~~~~~~~g~~~ga~~g~~ 56 (239)
T TIGR03789 38 EADQEALIGLGSGALLGAL 56 (239)
T ss_pred ccccchhhhHHHHHHHhhh
Confidence 3344455588888888766
No 42
>KOG4096|consensus
Probab=21.17 E-value=1.4e+02 Score=23.04 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=33.3
Q ss_pred HHHhhhhhhhHhHhhhHHHHHHHHHhhhhccccCCChhhhHHHHHHHHHhhhhhhh
Q psy7109 50 FELAFSQIGGSCMLGAAIGGAEGFYKGLRNTTLEGQTGKLRRTQLLNHIMKHGSAT 105 (236)
Q Consensus 50 ~ee~~~~tG~syl~G~~lGg~~Gl~~G~~~~p~~g~t~KlRln~iLN~~gkrG~~~ 105 (236)
|++.=...-+++..|...|.++|-|..+|.-+ ++ +..++.+=+.+...+..+
T Consensus 8 ~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~-~g---~~~vr~iGkt~~~SagtF 59 (75)
T KOG4096|consen 8 FDKIKMGLMMGGAVGGATGALFGGFAALRYGP-RG---RGLVRTIGKTMLQSAGTF 59 (75)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccchhheeecC-Ch---hHHHHHHhHHHHhccchh
Confidence 44444456678888999999999999999876 33 334444444444433333
No 43
>TIGR02790 nickel_nikC nickel ABC transporter, permease subunit NikC. This family consists of the NikC family of nickel ABC transporter permeases. Operons that contain this protein also contain a homologous permease subunit NikB. Nickel is used in cells as part of urease or certain hydrogenases or superoxide dismutases.
Probab=21.17 E-value=2.1e+02 Score=25.40 Aligned_cols=44 Identities=18% Similarity=-0.039 Sum_probs=27.5
Q ss_pred CCccccccchhhhhhhHHHhhhh-------hhhHhHhhhHHHHHHHHHhhhh
Q psy7109 34 QPEFIFPEGASKQRGRFELAFSQ-------IGGSCMLGAAIGGAEGFYKGLR 78 (236)
Q Consensus 34 ~PEfIfpEea~k~Rg~~ee~~~~-------tG~syl~G~~lGg~~Gl~~G~~ 78 (236)
++|+.|-.+. -.|+-+.+.+.. .-.+.+.+..+|...|+..|.+
T Consensus 39 ~~~~~lGTd~-~Grdv~~~l~~g~~~TL~ia~~~~~i~~~ig~~lG~~ag~~ 89 (258)
T TIGR02790 39 SMEYWLGTDH-LGRCIFSRLIFGARVSLGSALLVLGLVLTIGLLIGGLAGYI 89 (258)
T ss_pred CCCCCCCCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 5788888776 677888777652 2333344455666666666554
No 44
>TIGR02808 short_TIGR02808 conserved hypothetical protein TIGR02808. This very small protein (about 46 amino acids) consists largely of a single predicted membrane-spanning region. It is found in Photobacterium profundum SS9 and in three species of Vibrio, always near periplasmic nitrate reductase genes, but far from the periplasmic nitrate reductase genes in Aeromonas hydrophila ATCC7966.
Probab=20.98 E-value=2.4e+02 Score=19.56 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=24.9
Q ss_pred HHHHHHhhhhccCchhhhhhHhHHHHHHHHHHHHhcCC
Q psy7109 187 LENIVKERSKRCGLKKCGLGGVVGLGIASLYVLWNKRD 224 (236)
Q Consensus 187 ~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~ 224 (236)
||+++=.-+--+-.--..++|.+|....++|.|--..|
T Consensus 4 LEsviWHilGY~AmPvIil~GF~~Va~~si~lLs~~~d 41 (42)
T TIGR02808 4 LESTIWHVLGYGAMPFIILSGFVAVAVTSILLLNAFGD 41 (42)
T ss_pred HHHHHHHHhcccccchHHhhhhHHHHHHHHHHHHhhcC
Confidence 44444333323334456789999999999999876544
No 45
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=20.80 E-value=4.7e+02 Score=23.20 Aligned_cols=19 Identities=42% Similarity=0.751 Sum_probs=10.4
Q ss_pred hHhhhHHHHHHHHHhhhhc
Q psy7109 61 CMLGAAIGGAEGFYKGLRN 79 (236)
Q Consensus 61 yl~G~~lGg~~Gl~~G~~~ 79 (236)
.+.|+.+||+.|.+.+..+
T Consensus 15 illg~~iGg~~G~~~~~~~ 33 (248)
T PF11368_consen 15 ILLGGLIGGFIGFFIGRIG 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455556666666555444
No 46
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=20.70 E-value=4e+02 Score=24.56 Aligned_cols=76 Identities=18% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhhhhhhcccCC-------------------Cc--hhHHHHHHhhhhhhhcccccccccccccccccccCC
Q psy7109 110 GTIAVMYSSFGVLLQTTRGTD-------------------DD--FNTLTAATATGMLFRSTGNCLVSSLSSFSLHFCDNK 168 (236)
Q Consensus 110 GvigllYSg~ec~ie~~RgK~-------------------D~--~NSIaAGalTGaLyks~~~~~~~~~~~~~~~~~~~~ 168 (236)
|.++++...-|-.++.+..-. |+ .=++..|.++|-+.-++
T Consensus 13 GTiAlI~GIYe~lI~ai~~~~~~~~k~~~~~~~~~~~~~~~~~fL~~l~~G~~~gi~~~s~------------------- 73 (257)
T PF04018_consen 13 GTIALILGIYERLIEAISNIFPKDIKLLLKGRFKEAWKKINLKFLLPLGIGILIGILLFSK------------------- 73 (257)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHH-------------------
Q ss_pred CcccccCccCCcchhhHHHHHHHHhhhhccCchhhhhhHhHHHHHHHHHHHHhcCCccc
Q psy7109 169 TSAVTVPSIRPLTCSQKLLENIVKERSKRCGLKKCGLGGVVGLGIASLYVLWNKRDSLS 227 (236)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 227 (236)
+++..+. --..-..+-.+|+.++++..++++.++.+
T Consensus 74 -----------------~i~~ll~------~yp~~t~~fF~GLIlgSip~l~k~~~~~~ 109 (257)
T PF04018_consen 74 -----------------VISYLLE------NYPIPTYSFFFGLILGSIPFLYKEIKKFS 109 (257)
T ss_pred -----------------HHHHHHH------hCHHHHHHHHHHHHHHHHHHHHHHhccCC
Done!