Query psy7109
Match_columns 236
No_of_seqs 183 out of 503
Neff 4.3
Searched_HMMs 29240
Date Fri Aug 16 18:24:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7109.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/7109hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l2t_A Receptor tyrosine-prote 19.3 1.1E+02 0.0039 20.2 3.4 8 203-210 11-18 (44)
2 2hjm_A Hypothetical protein PF 18.4 72 0.0025 24.7 2.6 33 116-149 32-64 (103)
3 2lck_A Mitochondrial uncouplin 18.0 4.1E+02 0.014 22.2 7.6 36 112-147 178-217 (303)
4 1pc2_A Mitochondria fission pr 17.9 6.3 0.00022 32.2 -3.7 41 177-217 100-140 (152)
5 1bf5_A Signal transducer and a 17.8 28 0.00096 34.3 0.2 63 107-175 415-480 (575)
6 2lck_A Mitochondrial uncouplin 16.1 4.8E+02 0.016 21.8 9.5 57 91-147 54-119 (303)
7 1bg1_A Protein (transcription 15.5 30 0.001 34.2 -0.3 62 107-174 431-495 (596)
8 3mhp_C TIC62_peptide, ferredox 14.2 1.2E+02 0.004 18.2 2.2 17 15-31 3-19 (26)
9 2lbg_A Major prion protein; co 13.9 1.5E+02 0.0052 17.8 2.7 19 59-77 5-23 (27)
10 1okc_A ADP, ATP carrier protei 13.6 5.5E+02 0.019 21.2 8.0 55 92-146 58-126 (297)
No 1
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=19.29 E-value=1.1e+02 Score=20.16 Aligned_cols=8 Identities=38% Similarity=0.542 Sum_probs=3.9
Q ss_pred hhhhHhHH
Q psy7109 203 CGLGGVVG 210 (236)
Q Consensus 203 ~~~~~~~g 210 (236)
+..+|+||
T Consensus 11 aIA~gVVg 18 (44)
T 2l2t_A 11 LIAAGVIG 18 (44)
T ss_dssp HHHHHHHH
T ss_pred eEEEeehH
Confidence 34455555
No 2
>2hjm_A Hypothetical protein PF1176; singleton protein PF1176, structural genomics, secsg, PSI, P structure initiative; 2.90A {Pyrococcus furiosus}
Probab=18.39 E-value=72 Score=24.73 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=27.3
Q ss_pred HhhhhhhhhhcccCCCchhHHHHHHhhhhhhhcc
Q psy7109 116 YSSFGVLLQTTRGTDDDFNTLTAATATGMLFRST 149 (236)
Q Consensus 116 YSg~ec~ie~~RgK~D~~NSIaAGalTGaLyks~ 149 (236)
|-.++-++++.|| +|..+.-+=|++-|.|-...
T Consensus 32 Fi~Ln~glEskrG-e~Fv~vsIlGFlEGiLttLK 64 (103)
T 2hjm_A 32 FITLTHGIEKTRG-EAFAKASIYGFLEGILTTLK 64 (103)
T ss_dssp HHHTTSHHHHHHC-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhhHhhhch-HHHHHHHHHHHHHHHHHHHH
Confidence 5567888999998 55889888999999987776
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=18.02 E-value=4.1e+02 Score=22.22 Aligned_cols=36 Identities=19% Similarity=0.150 Sum_probs=21.9
Q ss_pred HHHHHhhhhhhhhhccc----CCCchhHHHHHHhhhhhhh
Q psy7109 112 IAVMYSSFGVLLQTTRG----TDDDFNTLTAATATGMLFR 147 (236)
Q Consensus 112 igllYSg~ec~ie~~Rg----K~D~~NSIaAGalTGaLyk 147 (236)
.++.|...|..-+.+.. .++.+..+++|+++|++-.
T Consensus 178 ~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~ 217 (303)
T 2lck_A 178 NCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTT 217 (303)
T ss_dssp HHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHH
Confidence 34556666666555543 2234567888888887643
No 4
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=17.92 E-value=6.3 Score=32.16 Aligned_cols=41 Identities=29% Similarity=0.421 Sum_probs=32.8
Q ss_pred cCCcchhhHHHHHHHHhhhhccCchhhhhhHhHHHHHHHHH
Q psy7109 177 IRPLTCSQKLLENIVKERSKRCGLKKCGLGGVVGLGIASLY 217 (236)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~ 217 (236)
+.|-+.-.+-|...++++.++-|+..+++.|.++++++++.
T Consensus 100 ieP~n~QA~~Lk~~ie~~~~kdgl~G~~i~gg~~~~~~g~~ 140 (152)
T 1pc2_A 100 TEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMALGVAGLA 140 (152)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHTTCCCSSCSSSSSCCSSCSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 56888788889999999999999999988776666555543
No 5
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=17.76 E-value=28 Score=34.28 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhhhhhhhhhcccCCCchhHHHHHHhhhhhhhccccccc--ccccccccccccC-CCcccccC
Q psy7109 107 STLGTIAVMYSSFGVLLQTTRGTDDDFNTLTAATATGMLFRSTGNCLV--SSLSSFSLHFCDN-KTSAVTVP 175 (236)
Q Consensus 107 NsfGvigllYSg~ec~ie~~RgK~D~~NSIaAGalTGaLyks~~~~~~--~~~~~~~~~~~~~-~~~~~~~~ 175 (236)
.+|-.|-.+|..+|.+=.+++. .||. |.+-|-|=|.....+. .--..|+|||+|. +..++|+.
T Consensus 415 ~~ftFW~Wf~~ilelik~hL~~---~W~d---G~I~GFIsK~~a~~lL~~~~~GTFLLRFSdS~~~GgITia 480 (575)
T 1bf5_A 415 KNFPFWLWIESILELIKKHLLP---LWND---GCIMGFISKERERALLKDQQPGTFLLRFSESSREGAITFT 480 (575)
T ss_dssp SSSCHHHHHHHHHHHHHHHTHH---HHHT---TCCCCCCCHHHHHHHTTTCCSCCCCEEECSSCSSCCEEEE
T ss_pred CCccHHHHHHHHHHHHHHHHHh---hccC---CceEEeecHHHHHHHHhCCCCCeEEEecCCCCCCCcEEEE
Confidence 4555788899998887655553 6664 7777755443310000 0135799999998 77776653
No 6
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=16.12 E-value=4.8e+02 Score=21.77 Aligned_cols=57 Identities=14% Similarity=-0.009 Sum_probs=32.0
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHH------HHHhhhhhhhhhcccC---CCchhHHHHHHhhhhhhh
Q psy7109 91 RTQLLNHIMKHGSATASTLGTIA------VMYSSFGVLLQTTRGT---DDDFNTLTAATATGMLFR 147 (236)
Q Consensus 91 ln~iLN~~gkrG~~~GNsfGvig------llYSg~ec~ie~~RgK---~D~~NSIaAGalTGaLyk 147 (236)
+.++++.=+-++..-|....++. +.|...|..-+.+... .+.+..++||+++|++-.
T Consensus 54 ~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~ 119 (303)
T 2lck_A 54 ILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAV 119 (303)
T ss_dssp HHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHH
Confidence 44555555556666666655553 2333444444444322 345667889999887643
No 7
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=15.50 E-value=30 Score=34.22 Aligned_cols=62 Identities=15% Similarity=0.231 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhhhhhhhhhcccCCCchhHHHHHHhhhhhhhccccccccc--ccccccccccC-CCccccc
Q psy7109 107 STLGTIAVMYSSFGVLLQTTRGTDDDFNTLTAATATGMLFRSTGNCLVSS--LSSFSLHFCDN-KTSAVTV 174 (236)
Q Consensus 107 NsfGvigllYSg~ec~ie~~RgK~D~~NSIaAGalTGaLyks~~~~~~~~--~~~~~~~~~~~-~~~~~~~ 174 (236)
++|-.|-.+|..+|.+=.+++ +.||. |.+-|-|=|.....+..+ -..|++||++. +..++|+
T Consensus 431 ~~ftFW~Wf~~ilelik~hL~---~lW~d---G~I~Gfisk~~a~~lL~~~~~GTFLlRFSes~~~Ggiti 495 (596)
T 1bg1_A 431 KGFSFWVWLDNIIDLVKKYIL---ALWNE---GYIMGFISKERERAILSTKPPGTFLLRFSESSKEGGVTF 495 (596)
T ss_dssp CSSBHHHHHHHHHHHHHHSCS---HHHHS---SCCCBCCCTTGGGTTTTTSCTTCBCEEECSSCSSCCEEE
T ss_pred CCcchhHHHHHHHHHHHHHhh---hhccc---CCeEEEecHHHHHHHHhCCCCCeeEEeecCCCCCCcEEE
Confidence 455678889998887744444 46764 777776655442222221 24799999999 8888776
No 8
>3mhp_C TIC62_peptide, ferredoxin--NADP reductase, LEAF isozyme, chlorop; FNR, oxidoreductase, thylakoid membrane, proton-FLUX, poly P helix; HET: FAD; 1.70A {Pisum sativum}
Probab=14.21 E-value=1.2e+02 Score=18.17 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=10.9
Q ss_pred ccCCCCCCCCCCCCCCC
Q psy7109 15 IQAKSPYLDFDPAYLPK 31 (236)
Q Consensus 15 ~~~~~py~~~dp~~Lpt 31 (236)
.+++|||..++--.=|+
T Consensus 3 ~rPlSpy~~Y~dlKPPs 19 (26)
T 3mhp_C 3 EQPLSPYTAYDDLKPPS 19 (26)
T ss_dssp CCCSSTTTTBTTSSCSS
T ss_pred ccccCccccccccCCCC
Confidence 46889998775444344
No 9
>2lbg_A Major prion protein; conserved hydrophobic region, membrane protei; NMR {Homo sapiens}
Probab=13.90 E-value=1.5e+02 Score=17.83 Aligned_cols=19 Identities=37% Similarity=0.765 Sum_probs=13.9
Q ss_pred hHhHhhhHHHHHHHHHhhh
Q psy7109 59 GSCMLGAAIGGAEGFYKGL 77 (236)
Q Consensus 59 ~syl~G~~lGg~~Gl~~G~ 77 (236)
.++..|+++|++-|.+-|.
T Consensus 5 ga~AAGaVvGglGgy~lg~ 23 (27)
T 2lbg_A 5 GAAAAGAVVGGLGGYMLGS 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhHHHHHHH
Confidence 4567788888888777665
No 10
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=13.61 E-value=5.5e+02 Score=21.21 Aligned_cols=55 Identities=13% Similarity=-0.013 Sum_probs=28.6
Q ss_pred HHHHHHHhhhhhhhhhHHHHH------HHHHhhhhhhhhhccc---CC-C----chhHHHHHHhhhhhh
Q psy7109 92 TQLLNHIMKHGSATASTLGTI------AVMYSSFGVLLQTTRG---TD-D----DFNTLTAATATGMLF 146 (236)
Q Consensus 92 n~iLN~~gkrG~~~GNsfGvi------gllYSg~ec~ie~~Rg---K~-D----~~NSIaAGalTGaLy 146 (236)
.++++.=+-+|..-|....++ ++.|...|..-+.+.. .+ + .+..++||+++|++-
T Consensus 58 ~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~ 126 (297)
T 1okc_A 58 VRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATS 126 (297)
T ss_dssp HHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHH
Confidence 344444455565556655544 4445555554442211 11 1 234678888888754
Done!