Query psy7109
Match_columns 236
No_of_seqs 183 out of 503
Neff 4.3
Searched_HMMs 13730
Date Fri Aug 16 18:24:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy7109.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/7109hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1okca_ f.42.1.1 (A:) ADP,ATP 37.4 70 0.0051 24.3 8.3 24 58-81 3-26 (292)
2 d1bf5a3 d.93.1.1 (A:569-710) S 20.3 15 0.0011 28.2 0.9 18 157-174 28-46 (142)
3 d1jjcb2 a.6.1.1 (B:400-474) Do 16.0 42 0.003 22.1 2.4 27 166-192 39-66 (75)
4 d2gena2 a.121.1.1 (A:76-193) P 11.4 1.8E+02 0.013 18.8 4.9 33 184-216 52-88 (118)
5 d1q8ca_ a.79.1.2 (A:) Hypothet 10.8 60 0.0044 23.9 2.1 19 177-195 39-57 (140)
6 d1nekd_ f.21.2.2 (D:) Succinat 9.0 92 0.0067 21.6 2.6 39 183-221 74-112 (113)
7 d1t5ja_ a.209.1.1 (A:) Hypothe 7.4 94 0.0069 24.1 2.2 33 49-81 239-275 (301)
8 d1s1ma2 c.37.1.10 (A:1-266) CT 7.1 88 0.0064 25.9 1.9 29 15-43 38-67 (266)
9 d1y7ua1 d.38.1.1 (A:8-171) Acy 6.8 96 0.007 22.8 1.8 43 160-202 110-152 (164)
10 d2vo1a1 c.37.1.10 (A:1-273) CT 6.3 69 0.005 26.7 0.8 29 15-43 36-65 (273)
No 1
>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus), heart isoform t1 [TaxId: 9913]}
Probab=37.38 E-value=70 Score=24.30 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=15.6
Q ss_pred hhHhHhhhHHHHHHHHHhhhhccc
Q psy7109 58 GGSCMLGAAIGGAEGFYKGLRNTT 81 (236)
Q Consensus 58 G~syl~G~~lGg~~Gl~~G~~~~p 81 (236)
+.+|+-.++.|++-|++.-..-.|
T Consensus 3 ~~~~~~~~laG~~a~~i~~~~~~P 26 (292)
T d1okca_ 3 ALSFLKDFLAGGVAAAISKTAVAP 26 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred CchHHHHHHHHHHHHHHHHHHhhH
Confidence 356666777777777776655444
No 2
>d1bf5a3 d.93.1.1 (A:569-710) STAT-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.33 E-value=15 Score=28.17 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=13.3
Q ss_pred ccccccccccC-CCccccc
Q psy7109 157 LSSFSLHFCDN-KTSAVTV 174 (236)
Q Consensus 157 ~~~~~~~~~~~-~~~~~~~ 174 (236)
-..|+|||||. ...++|+
T Consensus 28 ~GTFLLRFSdS~~~Ggiti 46 (142)
T d1bf5a3 28 PGTFLLRFSESSREGAITF 46 (142)
T ss_dssp SCCCCEEECSSCSSCCEEE
T ss_pred CceEEEEeccCccCCceEE
Confidence 36799999995 5566654
No 3
>d1jjcb2 a.6.1.1 (B:400-474) Domains B1 and B5 of PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
Probab=16.00 E-value=42 Score=22.09 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=21.2
Q ss_pred cCCCcccccCccCC-cchhhHHHHHHHH
Q psy7109 166 DNKTSAVTVPSIRP-LTCSQKLLENIVK 192 (236)
Q Consensus 166 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 192 (236)
++.+-.|++|+-|+ +++..-|.|.|..
T Consensus 39 ~~~~~~V~vPs~R~Di~~~~DliEEi~R 66 (75)
T d1jjcb2 39 EGPTYRVTPPSHRLDLRLEEDLVEEVAR 66 (75)
T ss_dssp SSSSEEEECCTTCTTCCSHHHHHHHHHH
T ss_pred cCCcEEEecchhccccCCcchHHHHHHH
Confidence 33456789999998 7788888888875
No 4
>d2gena2 a.121.1.1 (A:76-193) Probable transcriptional regulator PA1836 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.39 E-value=1.8e+02 Score=18.76 Aligned_cols=33 Identities=6% Similarity=-0.095 Sum_probs=22.0
Q ss_pred hHHHHHHHHhhhhccCchhh----hhhHhHHHHHHHH
Q psy7109 184 QKLLENIVKERSKRCGLKKC----GLGGVVGLGIASL 216 (236)
Q Consensus 184 ~~~~~~~~~~~~~~~g~~~~----~~~~~~g~~~~~~ 216 (236)
-+.+++++++-.++..+|.+ ....++|.+...+
T Consensus 52 ~~~i~~~i~~g~~~G~~r~~~~~~~~~~i~G~~~~~~ 88 (118)
T d2gena2 52 FARIHAALAGYRAEGLFREMPDDCFASVVIGPAHDLA 88 (118)
T ss_dssp HHHHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHHHH
Confidence 36788899988888888864 4445555554333
No 5
>d1q8ca_ a.79.1.2 (A:) Hypothetical protein MG027 {Mycoplasma genitalium [TaxId: 2097]}
Probab=10.79 E-value=60 Score=23.93 Aligned_cols=19 Identities=32% Similarity=0.232 Sum_probs=15.8
Q ss_pred cCCcchhhHHHHHHHHhhh
Q psy7109 177 IRPLTCSQKLLENIVKERS 195 (236)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~ 195 (236)
-||||..||++-..|.||.
T Consensus 39 er~ln~wqk~ivk~fse~~ 57 (140)
T d1q8ca_ 39 ERQLNEWQKLIVKAFSENI 57 (140)
T ss_dssp TTCCCHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHH
Confidence 5899999999877777763
No 6
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=8.98 E-value=92 Score=21.55 Aligned_cols=39 Identities=23% Similarity=0.229 Sum_probs=25.5
Q ss_pred hhHHHHHHHHhhhhccCchhhhhhHhHHHHHHHHHHHHh
Q psy7109 183 SQKLLENIVKERSKRCGLKKCGLGGVVGLGIASLYVLWN 221 (236)
Q Consensus 183 ~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~ 221 (236)
-|-.+|.-++++..|.-+........+..++.+++.+|+
T Consensus 74 l~~IieDYi~~~~~r~~~~~~~~~~~~~~~~~~i~~lw~ 112 (113)
T d1nekd_ 74 MWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWG 112 (113)
T ss_dssp HHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 356677777766555555555555666677777887875
No 7
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.40 E-value=94 Score=24.05 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=22.7
Q ss_pred hHHHhhh----hhhhHhHhhhHHHHHHHHHhhhhccc
Q psy7109 49 RFELAFS----QIGGSCMLGAAIGGAEGFYKGLRNTT 81 (236)
Q Consensus 49 ~~ee~~~----~tG~syl~G~~lGg~~Gl~~G~~~~p 81 (236)
.|++.+. .-|=+...|++.|++.|.+.|...-|
T Consensus 239 ~f~~ai~~av~~GgDtdt~aai~Gal~GA~~G~~~IP 275 (301)
T d1t5ja_ 239 NFKEGMLKCINAGGDTDSLASMYGAMAGAYYGFKNIP 275 (301)
T ss_dssp SHHHHHHHHHTSCBSHHHHHHHHHHHHHHHHCGGGSC
T ss_pred CHHHHHHHHHHcCCChHHHHHHHHHHHHHHhChhcCC
Confidence 4455433 33446667888888888888887766
No 8
>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=7.10 E-value=88 Score=25.86 Aligned_cols=29 Identities=31% Similarity=0.611 Sum_probs=18.8
Q ss_pred ccCCCCCCCCCC-CCCCCCCCCccccccch
Q psy7109 15 IQAKSPYLDFDP-AYLPKTSQPEFIFPEGA 43 (236)
Q Consensus 15 ~~~~~py~~~dp-~~Lpt~~~PEfIfpEea 43 (236)
.+-..||+|+|| .+=|-.-+.-|+..+++
T Consensus 38 ~~K~DPYlNvD~GtmsP~eHGEvfVt~DG~ 67 (266)
T d1s1ma2 38 IMKLDPYINVDPGTMSPIQHGEVFVTEDGA 67 (266)
T ss_dssp EEEEECCSCSCGGGSCTTTSCCCEECTTSC
T ss_pred EEecccceecCCCCCCchhhceeEEecccc
Confidence 356789999999 33333224557777765
No 9
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus cereus [TaxId: 1396]}
Probab=6.80 E-value=96 Score=22.81 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=30.7
Q ss_pred cccccccCCCcccccCccCCcchhhHHHHHHHHhhhhccCchh
Q psy7109 160 FSLHFCDNKTSAVTVPSIRPLTCSQKLLENIVKERSKRCGLKK 202 (236)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 202 (236)
|.|---|+....+.||.+.|-|..++.+.+.-++|.+....|+
T Consensus 110 ftfVavd~~g~p~~vp~l~p~t~eE~~~~~~a~~r~~~R~~r~ 152 (164)
T d1y7ua1 110 VTFVALSKENNPVPVPRVIPDTEEEKESHRIAVLRAEQRHIRK 152 (164)
T ss_dssp EEEEEECTTSCBCCCCEEECCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCeeeCCccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4443345666778899999999999988877777765554443
No 10
>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.34 E-value=69 Score=26.66 Aligned_cols=29 Identities=21% Similarity=0.544 Sum_probs=9.0
Q ss_pred ccCCCCCCCCCC-CCCCCCCCCccccccch
Q psy7109 15 IQAKSPYLDFDP-AYLPKTSQPEFIFPEGA 43 (236)
Q Consensus 15 ~~~~~py~~~dp-~~Lpt~~~PEfIfpEea 43 (236)
.+-..||+|+|| .+=|-.-+.-|+..+++
T Consensus 36 ~~K~DPYlNvD~GtmsP~eHGEvfVt~DG~ 65 (273)
T d2vo1a1 36 SIKIDPYINIDAGTFSPYEHGEVFVLDDGG 65 (273)
T ss_dssp EEEEECSSCCC-------------------
T ss_pred EEecccceecCCCCCCHHHHhhhheecccc
Confidence 346789999999 33232223455555554
Done!